{"text_format":"3","workbook":"xls","n_sheets":1,"sheets":["Table S6"],"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Table S6","index":0,"n_rows":991,"n_cols":19,"rows_kept":991,"flags":["formulas_cached_only"]}
["Table S6. RNA-seq results with wild type (T01, T03, T05) and fgw1 plants (T02, T04, T06) in panicles (Up-DEGs are in red color and down-DEGs are in green color)"]
["#ID","T01","T02","T03","T04","T05","T06","FDR","log2FC","regulated","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KEGG_pathway_annotation","Swissprot_annotation","eggNOG_class","eggNOG_class_annotation","NR_annotation"]
["gene:BGIOSGA007594",{"v":0.0009763472427412,"d":"9.76E-04"},0.537994839,{"v":7.39985396e-06,"d":"7.40E-06"},0.122781012184494,{"v":6.19867443771794e-05,"d":"6.20E-05"},0.459710801570134,0.00108114997722064,"Infinity","up","--","--","Biological Process: defense response (GO:0006952);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: ADP binding (GO:0043531);; ","K13457|0|osa:4351886|Os12g0246700; K13457 disease resistance protein RPM1 (A)","Plant-pathogen interaction (ko04626)","Disease resistance protein RPM1 GN=F17A9.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_05965 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010279",{"v":2.21043e-05,"d":"2.21E-05"},0.695385,{"v":9.26853e-05,"d":"9.27E-05"},2.55299,{"v":0.000291911,"d":"2.92E-04"},2.2639,{"v":4.06239605705006e-06,"d":"4.06E-06"},"Infinity","up","--","--","Cellular Component: plastid (GO:0009536);; ","K14649|0|obr:102709164|transcription initiation factor TFIID subunit 8-like; K14649 transcription initiation factor TFIID subunit 8 (A)","Basal transcription factors (ko03022)","Transcription initiation factor TFIID subunit 8 GN=TAF8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","hypothetical protein OsI_12539 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023850",0.10475,2.58754,0,3.36122,0,7.14482,{"v":7.96177410458981e-05,"d":"7.96E-05"},"Infinity","up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Dirigent protein 5 (Precursor) GN=DIR5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_27016 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031159",0,1.93295,0,0.954029,0,1.37767,{"v":4.07039470204356e-06,"d":"4.07E-06"},"Infinity","up","--","--","--","--","--","Thaumatin-like protein 1 (Precursor) OS=Prunus persica (Peach) PE=2 SV=1","R","General function prediction only","Os09g0536300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA009347",0,1.130211177376,0,1.400843284,0.05296135356,2.176955,{"v":5.01166182732983e-07,"d":"5.01E-07"},6.6896125873971,"up","--","--","Molecular Function: sulfotransferase activity (GO:0008146);; ","--","--","Flavonol 3-sulfotransferase OS=Flaveria chlorifolia (Clasping yellowtops) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_09563 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021452",0,2.05807,0,1.06409,0.0464209,0.592461,0.00113541207035063,6.5450698722584,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","carboxyl-terminal peptidase-like [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012833",0,0.9055367934,0.07365659948,1.54500547,0,0.67826261578,{"v":5.7807843697889e-06,"d":"5.78E-06"},6.49217246367836,"up","[MG]","--","Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854);; Biological Process: steroid biosynthetic process (GO:0006694);; Cellular Component: membrane (GO:0016020);; Molecular Function: isomerase activity (GO:0016853);; Molecular Function: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity (GO:0047012);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 GN=T3F24.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_11971 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027659",0.0380661,0.664686,0.0442323,1.23811,0,1.32995,{"v":4.38875243999923e-05,"d":"4.39E-05"},6.08789993637215,"up","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: positive regulation of syringal lignin biosynthetic process (GO:1901430);; Biological Process: regulation of secondary cell wall biogenesis (GO:2000652);; ","K09422|6.66902e-166|osa:4344665|Os08g0151300; K09422 myb proto-oncogene protein, plant (A)","--","Transcription factor MYB86 GN=F21E10.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","hypothetical protein OsI_27804 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019378",0.064297,4.23982,0.0733807,1.94311,0.0898263,2.14956,{"v":9.46749423710393e-05,"d":"9.47E-05"},5.7378831142116,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","BURP domain-containing protein 2 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_18912 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012589",0.0399950937,14.229882,1.030880253116,23.445949,0.15435122422,16.391428,{"v":7.69202754329522e-21,"d":"7.69E-21"},5.48631880545065,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|8.33329e-139|obr:102718052|peroxidase 2-like; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 70 (Precursor) GN=PER70 OS=Zea mays (Maize) PE=1 SV=1","--","--","hypothetical protein OsI_11487 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015342",0.0486227,1.15513,0.111427,0.816128,0,2.30819,0.00200752834805525,5.2681937372726,"up","--","--","Biological Process: proteolysis (GO:0006508);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; ","--","--","Jacalin-related lectin 19 GN=JAL19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","OSJNBb0112E13.1 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA010116",0.08618673108,18.34952016,1.6302111379,24.9951960282,0.16853769548,17.25427275,{"v":1.27060784638706e-28,"d":"1.27E-28"},5.18877056477456,"up","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","hypothetical protein OsJ_11973 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002869",0.574296,13.6858,0.342531,15.8307,0.101007,6.36721,{"v":4.15712026305778e-07,"d":"4.16E-07"},5.07192938259167,"up","--","--","Molecular Function: lyase activity (GO:0016829);; ","--","--","--","S","Function unknown","hypothetical protein OsI_00595 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004351",6.4844,571.832,33.1164,233.873,2.98537,368.158,{"v":8.03681337702368e-06,"d":"8.04E-06"},4.71539098520193,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: photosystem I (GO:0009522);; Cellular Component: photosystem II (GO:0009523);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to blue light (GO:0009637);; Biological Process: photosynthesis, light harvesting (GO:0009765);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: response to far red light (GO:0010218);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; ","K08912|7.71623e-168|osa:4324705|Os01g0720500; K08912 light-harvesting complex II chlorophyll a/b binding protein 1 (A)","Photosynthesis - antenna proteins (ko00196)","Chlorophyll a-b binding protein 1, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","--","--","Os01g0720500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012871",0.221092,8.63265,0.4069582,12.40134,0.3851896,12.49234,{"v":8.86869667521941e-24,"d":"8.87E-24"},4.69503470842917,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: secondary cell wall (GO:0009531);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: cell wall modification involved in abscission (GO:0009830);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: cellulose microfibril organization (GO:0010215);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Cellular Component: anchored component of membrane (GO:0031225);; ","--","--","COBRA-like protein 5 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os03g0416200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA006900",0.0657948,1.23313,0.191666,2.47532,0,2.41371,{"v":7.85427013723013e-07,"d":"7.85E-07"},4.68080966526221,"up","--","--","Biological Process: metabolic process (GO:0008152);; Cellular Component: plastid (GO:0009536);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","--","UDP-glycosyltransferase 73C1 GN=F13K3.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_06316 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013952",0.473268,8.40731,0.690803,17.8049,0.508721,17.7987,{"v":5.19629078388544e-09,"d":"5.20E-09"},4.66476399518658,"up","--","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Chemocyanin (Precursor) OS=Lilium longiflorum (Trumpet lily) PE=1 SV=1","--","--","Os03g0850900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004845",0.177933,2.98396,0.208387,3.8456,0.246867,4.27862,{"v":4.47291728797594e-05,"d":"4.47E-05"},4.35904728577669,"up","--","--","Biological Process: maltose metabolic process (GO:0000023);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: positive regulation of catalytic activity (GO:0043085);; ","--","--","--","S","Function unknown","hypothetical protein OsI_04525 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013229",0.0760353,1.91021,0.450746,3.51862,0.106954,5.41821,{"v":0.000521536917262237,"d":"5.22E-04"},4.27161918952614,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: manganese ion binding (GO:0030145);; Molecular Function: nutrient reservoir activity (GO:0045735);; Cellular Component: apoplast (GO:0048046);; ","--","--","Putative germin-like protein 3-2 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","R","General function prediction only","Os03g0651800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019138",0.741277,53.6709,6.77198,58.6827,1.40881,64.6749,{"v":9.84371877588687e-33,"d":"9.84E-33"},4.26921464909447,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|osa:4337732|Os05g0135500; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 5 {ECO:0000250|UniProtKB:P22195} (Precursor) OS=Vitis vinifera (Grape) PE=1 SV=2","R","General function prediction only","TPA: class III peroxidase 71 precursor [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000687",0.0213609,0.839983,0.0750454,0.471447,0.0296341,0.650169,{"v":0.000341171937307708,"d":"3.41E-04"},4.2657650748369,"up","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: carbohydrate binding (GO:0030246);; Biological Process: cellular protein localization (GO:0034613);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: petal development (GO:0048441);; Biological Process: stamen development (GO:0048443);; Biological Process: recognition of pollen (GO:0048544);; ","--","--","Receptor-like serine/threonine-protein kinase SD1-8 (Precursor) GN=T6K22.110 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_04010 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008753",0.645069,10.2907,0.957231,18.5056,1.14244,22.0145,{"v":2.5871546683586e-08,"d":"2.59E-08"},4.23778946768806,"up","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: membrane (GO:0016020);; Biological Process: sexual reproduction (GO:0019953);; ","--","--","Expansin-B11 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","beta-expansin OsEXPB11 [Oryza sativa]"]
["gene:BGIOSGA021934",4.65633,66.6458,10.0818,93.1274,2.113894,47.6785,{"v":1.77364219424141e-08,"d":"1.77E-08"},4.16263682795031,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Dirigent protein 21 (Precursor) GN=DIR21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","hypothetical protein OsI_21624 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018754",0.74693,33.208,3.19425,32.428,1.66995,36.464,{"v":1.66152527518945e-20,"d":"1.66E-20"},4.1025164330874,"up","[M]","Cell wall/membrane/envelope biogenesis ","Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Cellular Component: spliceosomal complex (GO:0005681);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: U6 snRNA binding (GO:0017070);; Molecular Function: U5 snRNA binding (GO:0030623);; ","--","--","Fasciclin-like arabinogalactan protein 11 (Precursor) GN=FLA11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","Os05g0163300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA028037",0.298295,9.26398,0.8670232,9.27925,0.248663535118,8.10141,{"v":4.09298983408715e-10,"d":"4.09E-10"},4.09185322627374,"up","--","--","Molecular Function: iron ion binding (GO:0005506);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to blue light (GO:0009637);; Biological Process: plastid organization (GO:0009657);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; ","--","--","--","S","Function unknown","Os08g0162600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA034012",0,1.682675,0.067794241,0.501634,0.11783136,1.111344,0.00452169787665095,4.09025441411863,"up","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: defense response (GO:0006952);; Cellular Component: plastid (GO:0009536);; Biological Process: gibberellin metabolic process (GO:0009685);; Molecular Function: ent-kaurene synthase activity (GO:0009899);; Molecular Function: stemar-13-ene synthase activity (GO:0034278);; Molecular Function: ent-sandaracopimaradiene synthase activity (GO:0034280);; Molecular Function: ent-isokaurene synthase activity (GO:0034281);; Molecular Function: ent-pimara-8(14),15-diene synthase activity (GO:0034282);; Molecular Function: syn-stemod-13(17)-ene synthase activity (GO:0034283);; Biological Process: diterpene phytoalexin metabolic process (GO:0051501);; ","K14044|0|osa:4350502|Os11g0474800; K14044 stemar-13-ene synthase [EC:4.2.3.33] (A)","Diterpenoid biosynthesis (ko00904)","Stemod-13(17)-ene synthase GN=KSL11 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1","--","--","RecName: Full=Stemod-13(17)-ene synthase; AltName: Full=Ent-kaurene synthase-like 11; Short=OsKSL11; AltName: Full=Stemodene synthase [Oryza sativa Indica Group] "]
["gene:BGIOSGA027412",0.108437,15.6437,1.09779,14.0277,1.57441,14.1218,{"v":2.04448222152164e-09,"d":"2.04E-09"},4.08178775018102,"up","--","--","Cellular Component: cell wall (GO:0005618);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: manganese ion binding (GO:0030145);; Cellular Component: extracellular matrix (GO:0031012);; Molecular Function: nutrient reservoir activity (GO:0045735);; Cellular Component: apoplast (GO:0048046);; ","--","--","Germin-like protein 8-12 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os08g0231400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA037914",0.0539027,1.04373,0.157035,1.61072,0.0718389,1.22189,{"v":2.21960820986105e-05,"d":"2.22E-05"},4.04096265357541,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Laccase-22 (Precursor) GN=OsJ_033548 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","RecName: Full=Laccase-22; AltName: Full=Benzenediol:oxygen oxidoreductase 22; AltName: Full=Diphenol oxidase 22; AltName: Full=Urishiol oxidase 22; Flags: Precursor [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021911",0,0.3020689,0.116241963,0.5860362919,0,0.862412516,0.00253826674654574,3.95472599042944,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: lignin catabolic process (GO:0046274);; Biological Process: response to copper ion (GO:0046688);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Laccase-20 (Precursor) GN=LAC20 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","RecName: Full=Laccase-20; AltName: Full=Benzenediol:oxygen oxidoreductase 20; AltName: Full=Diphenol oxidase 20; AltName: Full=Urishiol oxidase 20; Flags: Precursor [Oryza sativa Indica Group] "]
["gene:BGIOSGA016141",0.438864,6.12719,0.604086,6.44966,0.177279,4.29433,{"v":1.57003908894249e-08,"d":"1.57E-08"},3.9035006719726,"up","[C]","Energy production and conversion ","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Probable aldo-keto reductase 1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","C","Energy production and conversion","Os04g0337500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA006897",0.53063,10.90020191671,1.74927,9.2373,0.69754,18.1858,{"v":2.11403749879431e-05,"d":"2.11E-05"},3.82680044565632,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","--","--","unnamed protein product [Oryza sativa Japonica Group] "]
["gene:BGIOSGA028887",0.921763,12.59774,1.971982,15.82919,0.851183,24.77274,{"v":2.99882860903075e-07,"d":"3.00E-07"},3.79251875801013,"up","[L]","Replication, recombination and repair ","Biological Process: base-excision repair (GO:0006284);; Molecular Function: DNA-3-methyladenine glycosylase activity (GO:0008725);; ","K01246|0|osa:9272626|Os08g0489300; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] (A)","Base excision repair (ko03410)","--","R","General function prediction only","Os08g0489300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013299",0.394966,4.08231,0.755352,8.96212,0.186793,6.61949,{"v":8.47970047927866e-08,"d":"8.48E-08"},3.77683657578156,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: xylan catabolic process (GO:0045493);; ","--","--","--","S","Function unknown","hypothetical protein OsI_12971 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022091",1.16644,28.7079,4.56737,27.3472,0.540225,24.8846,{"v":7.80096784858325e-19,"d":"7.80E-19"},3.72393727533394,"up","[P]","Inorganic ion transport and metabolism ","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: NADPH dehydrogenase activity (GO:0003959);; Molecular Function: ferredoxin-NADP+ reductase activity (GO:0004324);; Cellular Component: cytosol (GO:0005829);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: protein targeting to membrane (GO:0006612);; Molecular Function: poly(U) RNA binding (GO:0008266);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: plastid organization (GO:0009657);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Biological Process: photorespiration (GO:0009853);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to chitin (GO:0010200);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: negative regulation of defense response (GO:0031348);; Cellular Component: thylakoid lumen (GO:0031977);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of multi-organism process (GO:0043900);; Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156);; Molecular Function: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity (GO:0045157);; Cellular Component: apoplast (GO:0048046);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: NADP binding (GO:0050661);; ","K02641|0|osa:4339874|Os06g0107700; K02641 ferredoxin--NADP+ reductase [EC:1.18.1.2] (A)","Photosynthesis (ko00195)","Ferredoxin--NADP reductase, leaf isozyme, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","C","Energy production and conversion","hypothetical protein OsI_21320 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006167",0,35.9804,4.20289,24.161,1.19039,11.801,0.00379504581240025,3.70019154759809,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","Os02g0582900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021353",0.08706496619,0.62943603,0.149430088,1.019146191,0.0573136817,1.3341586834,0.00243667744990465,3.69690543790047,"up","--","--","Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; ","--","--","Anthranilate O-methyltransferase 1 GN=AAMT1 OS=Zea mays (Maize) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_22724 [Oryza sativa Indica Group]"]
["gene:BGIOSGA037260",2.58388,86.9808,12.9701,77.0966,2.07132,44.7754,{"v":5.70115932076214e-08,"d":"5.70E-08"},3.56194757620292,"up","[C]","Energy production and conversion ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast ribulose bisphosphate carboxylase complex (GO:0009573);; Biological Process: response to blue light (GO:0009637);; Biological Process: photorespiration (GO:0009853);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: response to far red light (GO:0010218);; Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);; Biological Process: reductive pentose-phosphate cycle (GO:0019253);; Cellular Component: cytosolic ribosome (GO:0022626);; Cellular Component: thylakoid lumen (GO:0031977);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; ","K01602|1.01511e-109|osa:4351966|Os12g0274700; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] (A)","Glyoxylate and dicarboxylate metabolism (ko00630);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Ribulose bisphosphate carboxylase small chain, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","C","Energy production and conversion","hypothetical protein OsI_38046 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020565",0.0280410288,0.519904,0.1332214682,0.6901623,0.0787674191,1.050815,0.00283389541371128,3.52041610139979,"up","--","--","Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","--","--","S","Function unknown","hypothetical protein OsI_24402 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005676",0.0600252,1.45536,0.412872,1.93997,0,1.32289,0.0034999957843234,3.48192897067068,"up","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Biological Process: response to abscisic acid (GO:0009737);; ","K09422|9.70207e-152|osa:4330632|Os02g0732600; K09422 myb proto-oncogene protein, plant (A)","--","Protein ODORANT1 GN=ODO1 OS=Petunia hybrida (Petunia) PE=2 SV=1","K","Transcription","hypothetical protein OsI_08821 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030483",0.251301,4.692631,0.74133958508,5.26893432813,0.53009983,5.83733142945,{"v":1.07061403864781e-06,"d":"1.07E-06"},3.4699505692401,"up","--","--","Cellular Component: spindle (GO:0005819);; Cellular Component: microtubule (GO:0005874);; Biological Process: mitotic nuclear division (GO:0007067);; Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","Os09g0307300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA036153",0.0785424,4.77966,0.718513,4.45283,0.652698,5.5989,{"v":6.34832060975052e-05,"d":"6.35E-05"},3.42873966292428,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Molecular Function: heat shock protein binding (GO:0031072);; ","--","--","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_38413 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000508",0.750286,9.16613,1.46896,15.2999,0.975092,11.1813,{"v":1.13526799823319e-13,"d":"1.14E-13"},3.424335363293,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Laccase-12/13 (Precursor) GN=OJ1362_D02.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_04394 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025390",0.572519,18.49894,3.65025,19.70031,0.902213,20.39596,{"v":8.64848715938777e-18,"d":"8.65E-18"},3.41559611321417,"up","[MG]","--","Molecular Function: mRNA binding (GO:0003729);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Molecular Function: poly(U) RNA binding (GO:0008266);; Cellular Component: chloroplast thylakoid (GO:0009534);; Biological Process: response to blue light (GO:0009637);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: response to red light (GO:0010114);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; Cellular Component: plastoglobule (GO:0010287);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: cell differentiation (GO:0030154);; Biological Process: plastid translation (GO:0032544);; Biological Process: positive regulation of translation (GO:0045727);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Cellular Component: apoplast (GO:0048046);; Molecular Function: coenzyme binding (GO:0050662);; ","--","--","Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic (Precursor) GN=CSP41A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os07g0212200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017542",0.133221,2.86298,1.3783,7.36732,0.381561,8.66763,0.00367230210558778,3.3966569728444,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: nucleoid (GO:0009295);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: defense response to bacterium (GO:0042742);; ","K02935|1.80446e-66|osa:4339648|Os05g0568300; K02935 large subunit ribosomal protein L7/L12 (A)","Ribosome (ko03010)","50S ribosomal protein L12, chloroplastic (Precursor) GN=P0671D01.26 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_21028 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013555",0.268097,23.2411,4.69999,20.3478,0.387167,16.291,{"v":3.86261988711481e-12,"d":"3.86E-12"},3.38774898350317,"up","[IQR]","--","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00059|5.86597e-137|osa:4334104|Os03g0748100; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] (A)","Fatty acid biosynthesis (ko00061);; Biotin metabolism (ko00780);; Biosynthesis of unsaturated fatty acids (ko01040);; Fatty acid metabolism (ko01212)","Short-chain type dehydrogenase/reductase OS=Picea abies (Norway spruce) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","Os03g0748100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023848",0.969537,7.83039,0.451958,10.8198,1.22502,8.43935,{"v":8.2401568781387e-06,"d":"8.24E-06"},3.38471125649605,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Dirigent protein 6 (Precursor) GN=DIR6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_27018 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013569",0.751629,6.26664,1.51738,8.28477,0.21852,9.7368,{"v":2.8211221263925e-06,"d":"2.82E-06"},3.37898778039085,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: DNA-templated transcription, elongation (GO:0006354);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: plastid organization (GO:0009657);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photosystem II assembly (GO:0010207);; Cellular Component: large ribosomal subunit (GO:0015934);; Cellular Component: membrane (GO:0016020);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Molecular Function: rRNA binding (GO:0019843);; ","K02933|2.27403e-156|osa:4334131|Os03g0751400; K02933 large subunit ribosomal protein L6 (A)","Ribosome (ko03010)","50S ribosomal protein L6, chloroplastic (Precursor) GN=YUP8H12.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Os03g0751400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA001542",0.186773,3.18162,0.341413,2.12427,0.355143,3.17478,{"v":2.45949713190965e-05,"d":"2.46E-05"},3.33860767084661,"up","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: chloroplast inner membrane (GO:0009706);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Plastidal glycolate/glycerate translocator 1, chloroplastic (Precursor) GN=PLGG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_02153 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025592",1.21736,59.379,2.52526,50.7173,9.54077,22.6189,{"v":0.000638058984807121,"d":"6.38E-04"},3.32193583696417,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_25795 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018579",2.4127044,36.605954,6.100095,33.094616,0.3152677261,10.5669880000024,{"v":0.000134168670931204,"d":"1.34E-04"},3.31643993623909,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","BURP domain-containing protein 6 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os05g0215066 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017919",1.65368,25.92073,2.655882,32.80422,3.9777895176,39.59899,{"v":5.62937187164795e-15,"d":"5.63E-15"},3.2998022514811,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Laccase-12/13 (Precursor) GN=OJ1362_D02.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_20213 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004881",0.554104,34.4005,3.52367,25.2244,3.96752,20.3824,{"v":1.36928083778277e-08,"d":"1.37E-08"},3.2811393250344,"up","--","--","Biological Process: maltose metabolic process (GO:0000023);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: PSII associated light-harvesting complex II (GO:0009517);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: nonphotochemical quenching (GO:0010196);; Biological Process: photosystem II assembly (GO:0010207);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Molecular Function: xanthophyll binding (GO:0051738);; Biological Process: response to karrikin (GO:0080167);; ","K03542|8.5101e-149|osa:4324933|Os01g0869800; K03542 photosystem II 22kDa protein (A)","Photosynthesis (ko00195)","Photosystem II 22 kDa protein, chloroplastic (Precursor) GN=PSBS OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","R","General function prediction only","Os01g0869800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA033926",0.04974862128,0.2052386,0.0099571802,0.1193826975,0,0.18554038675,0.00903439413859614,3.26773839256788,"up","--","--","Molecular Function: ATP binding (GO:0005524);; ","K17592|0|osa:4350582|Os11g0514100; K17592 sacsin (A)","--","--","S","Function unknown","hypothetical protein OsI_36253 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006834",9.238411,92.32145,14.221416,125.75268,6.945898,67.62715,{"v":4.07448196806598e-08,"d":"4.07E-08"},3.2549223198929,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Protodermal factor 1 (Precursor) GN=PDF1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_06457 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002539",0.906558,9.08666,1.91294,15.597,0.71305,10.8486,{"v":3.4004785707179e-06,"d":"3.40E-06"},3.24641542251262,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","--","--","unnamed protein product [Oryza sativa Japonica Group]"]
["gene:BGIOSGA000512",0.490804160417,2.975653,0.369935,4.84027,0.380476,3.62814,{"v":7.9383253196831e-07,"d":"7.94E-07"},3.2416187407577,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Laccase-4 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_04389 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019373",2.93616,34.6236,5.15006,38.264,0.7007,19.2165,{"v":1.24801278966122e-06,"d":"1.25E-06"},3.23071408224918,"up","--","--","Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","BURP domain-containing protein 7 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","--","--","hypothetical protein OsI_18903 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005365",1.92938,16.3709,2.74735,14.2293,1.34269,22.7988,{"v":0.000223878704549222,"d":"2.24E-04"},3.22527302938754,"up","--","--","--","K16578|6.27296e-17|osa:4331138|Os02g0816300; K16578 CLIP-associating protein 1/2 (A)","--","CLIP-associated protein GN=T2G17.1/F11A3.25 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","hypothetical protein OsI_09438 [Oryza sativa Indica Group] "]
["gene:BGIOSGA018135",0.436266,2.42501,0.228005,2.57936,0.104288,2.71323,{"v":1.09569000548823e-05,"d":"1.10E-05"},3.22293081169814,"up","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; ","--","--","ABC transporter G family member 23 GN=F7K24.160 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_19789 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015326",0.0742602100384684,10.943103130532,0.605894304450015,5.61114115000001,2.285041737,8.44028000013176,{"v":7.89192516618334e-07,"d":"7.89E-07"},3.21879238681993,"up","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Cellular Component: plastid (GO:0009536);; Molecular Function: terpene synthase activity (GO:0010333);; ","--","--","(+)-germacrene D synthase OS=Zingiber officinale (Ginger) PE=1 SV=1","--","--","hypothetical protein OsI_15397 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003523",0.260423,4.18806,0.752833,2.93553,0.0408008,2.92869,{"v":5.2845988050798e-06,"d":"5.28E-06"},3.20983817603148,"up","[P]","Inorganic ion transport and metabolism ","Molecular Function: acid phosphatase activity (GO:0003993);; Molecular Function: N,N-dimethylaniline monooxygenase activity (GO:0004499);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: NADP binding (GO:0050661);; ","--","--","Flavin-containing monooxygenase FMO GS-OX-like 8 GN=At5g61290 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_01942 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030834",0.336593,12.3104,2.63138,12.2334,0.838271,11.2009,{"v":2.26669403053527e-08,"d":"2.27E-08"},3.14835295160978,"up","--","--","Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to blue light (GO:0009637);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to sucrose (GO:0009744);; Biological Process: photosynthesis, light harvesting (GO:0009765);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: response to far red light (GO:0010218);; Cellular Component: membrane (GO:0016020);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: cellular cation homeostasis (GO:0030003);; Cellular Component: light-harvesting complex (GO:0030076);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: divalent metal ion transport (GO:0070838);; ","K08908|0|osa:4347166|Os09g0439500; K08908 light-harvesting complex I chlorophyll a/b binding protein 2 (A)","Photosynthesis - antenna proteins (ko00196)","Chlorophyll a-b binding protein 7, chloroplastic (Precursor) GN=CAB7 OS=Solanum lycopersicum (Tomato) PE=3 SV=1","R","General function prediction only","hypothetical protein OsI_31519 [Oryza sativa Indica Group]"]
["Rice_newGene_1577",1.0761,19.7589,3.83188,27.3385,3.67122,31.1235,{"v":2.38119142266338e-14,"d":"2.38E-14"},3.14825576153474,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Laccase-12/13 (Precursor) GN=OJ1362_D02.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","Os05g0458600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA033321",0.23659744907,3.06414811,1.08102537962,3.62405,0.31877841061,3.843207,{"v":0.000399737858483172,"d":"4.00E-04"},3.1102335187141,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: glutathione transferase activity (GO:0004364);; Biological Process: glutathione metabolic process (GO:0006749);; Cellular Component: chloroplast (GO:0009507);; Biological Process: de-etiolation (GO:0009704);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: lateral root development (GO:0048527);; Biological Process: response to growth hormone (GO:0060416);; Biological Process: response to karrikin (GO:0080167);; ","K00799|1.31498e-153|osa:4349191|Os10g0528900; K00799 glutathione S-transferase [EC:2.5.1.18] (A)","Glutathione metabolism (ko00480)","Probable glutathione S-transferase GSTU6 GN=OSJNBb0038A07.2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_34413 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011014",0.577608093,3.28272511869,0.54726872248,3.4676367645,0.18465645724,4.897465,{"v":5.07867772035139e-07,"d":"5.08E-07"},3.09140573205174,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Laccase-10 (Precursor) GN=OsJ_009911 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_10938 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033358",0.5136,18.3741,3.36594,12.8229,1.3246,14.5405,{"v":2.37777820753926e-06,"d":"2.38E-06"},3.07174829670181,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: DNA binding (GO:0003677);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: plastid chromosome (GO:0009508);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Cellular Component: chloroplast photosystem I (GO:0030093);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; ","--","--","Protein CURVATURE THYLAKOID 1B, chloroplastic (Precursor) GN=F19D11.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","Os10g0536500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA006969",0.740264,14.0459,4.98188,22.7566,0.422387,16.2649,{"v":4.75911932746865e-08,"d":"4.76E-08"},3.06442780355871,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: peroxiredoxin activity (GO:0051920);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Peroxiredoxin-2E-2, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os02g0192700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005264",2.64416,18.5127,4.20129,35.3917,2.47133,29.7394,{"v":7.35334276487648e-09,"d":"7.35E-09"},3.03430935437388,"up","--","--","Cellular Component: plant-type vacuole (GO:0000325);; Molecular Function: cysteine-type endopeptidase activity (GO:0004197);; Molecular Function: transporter activity (GO:0005215);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Biological Process: proteolysis (GO:0006508);; Biological Process: transport (GO:0006810);; Biological Process: developmental programmed cell death (GO:0010623);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K16290|0|dosa:Os01t0971400-01|Os01g0971400; Similar to Cysteine proteinase.; K16290 xylem cysteine proteinase [EC:3.4.22.-] (A)","--","Xylem cysteine proteinase 2 (Precursor) GN=XCP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","Os01g0971400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021769",0.0666722,0.987748,0.0394006,1.5837,0.388676,1.23233,0.00370025537499053,3.02266235285131,"up","--","--","Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","Shikimate O-hydroxycinnamoyltransferase GN=HST OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_21944 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018872",0.1356832723,1.7877080263,0.6068977,3.4806318,0.427700507295439,4.358658,{"v":0.000425287100064048,"d":"4.25E-04"},3.01023230443931,"up","--","--","Molecular Function: iron ion transmembrane transporter activity (GO:0005381);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: iron ion transmembrane transport (GO:0034755);; ","--","--","Solute carrier family 40 member 3, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_18327 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030777",2.71683,25.2715,5.29354,23.784,1.89382,34.196,{"v":1.11399604231004e-15,"d":"1.11E-15"},2.97985485087604,"up","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: plasma membrane (GO:0005886);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast (GO:0009507);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: xylem development (GO:0010089);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: rhamnogalacturonan I side chain metabolic process (GO:0010400);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; ","K10999|0|osa:4347093|Os09g0422500; K10999 cellulose synthase A [EC:2.4.1.12] (A)","--","Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os09g0422500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018567",0.178576,2.23115,0.411393,1.6327,0.0842341,1.41859,0.00926721368848346,2.97831392629485,"up","--","--","--","--","--","Transcription repressor OFP7 GN=OFP7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_18922 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008475",0.0228974,0.626616,0.191251,1.63662,0.259769,1.24759,0.00160521487392629,2.94768920887021,"up","[GEPR]","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","Sugar transport protein 5 GN=STP5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_07761 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027816",0.794609,8.13243,2.4683,10.8267,0.734625,13.4443,{"v":6.83070670964094e-06,"d":"6.83E-06"},2.94121638330731,"up","[KR]","--","Molecular Function: N-acetyltransferase activity (GO:0008080);; Cellular Component: chloroplast (GO:0009507);; Biological Process: photosynthesis, light reaction (GO:0019684);; ","--","--","Uncharacterized N-acetyltransferase ycf52 GN=ycf52 OS=Porphyra purpurea (Red seaweed) PE=3 SV=1","R","General function prediction only","Os08g0102000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA034755",0.338344,3.63985,0.562493,5.21309,1.35915,9.04125,0.00405052656943843,2.93734571378932,"up","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","Probable carboxylesterase 17 GN=CXE17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","V","Defense mechanisms","hypothetical protein OsI_35030 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031427",3.49255,84.6616,6.69403,64.2541,17.6072,69.1373,{"v":1.34269871185787e-17,"d":"1.34E-17"},2.92972180288872,"up","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: sexual reproduction (GO:0019953);; ","--","--","Expansin-B3 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","R","General function prediction only","Os10g0555900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA009289",2.639597,18.202461,6.48417663,19.821211,1.8161793,39.282367,0.00443801869614476,2.91535600119611,"up","--","--","--","K16578|0|osa:4331138|Os02g0816300; K16578 CLIP-associating protein 1/2 (A)","--","CLIP-associated protein GN=T2G17.1/F11A3.25 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_09437 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033103",3.6968,29.5711,5.88418,34.8984,3.5322,41.4838,{"v":2.11188384231282e-19,"d":"2.11E-19"},2.90493801048186,"up","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: plasma membrane (GO:0005886);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: defense response to fungus (GO:0050832);; ","K10999|0|osa:4348853|Os10g0467800; K10999 cellulose synthase A [EC:2.4.1.12] (A)","--","Cellulose synthase A catalytic subunit 7 [UDP-forming] GN=OSJNBa0006L06.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_33963 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036099",0.715071,7.06379,1.46689,5.81983,0.0448916,5.13141,{"v":1.47701448788047e-06,"d":"1.48E-06"},2.89300849478355,"up","[GEPR]","--","Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","Polyol transporter 5 GN=PLT5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","Os12g0514000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004281",0.24154360588,3.056788,0.4933302,3.782936,0.5984737524,2.468883,0.00131485725687107,2.89048802393155,"up","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: membrane (GO:0016020);; ","--","--","E3 ubiquitin-protein ligase At4g11680 GN=At4g11680 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_03422 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012350",0.317121368543616,4.6917720568126,1.2735304415056,5.33219575640078,0.499316103,4.308816790793,{"v":0.000189841800360118,"d":"1.90E-04"},2.87368724638936,"up","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: photosystem II oxygen evolving complex (GO:0009654);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: mRNA modification (GO:0016556);; Biological Process: cysteine biosynthetic process (GO:0019344);; Cellular Component: extrinsic component of membrane (GO:0019898);; Cellular Component: chloroplast photosystem II (GO:0030095);; ","--","--","PsbP-like protein 2, chloroplastic (Precursor) GN=F12L6.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_11024 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022041",4.7642,31.86265,7.24536,47.756,1.879031,24.1061,{"v":8.07010644611438e-06,"d":"8.07E-06"},2.87186041379216,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Protein ASPARTIC PROTEASE IN GUARD CELL 1 (Precursor) GN=ASPG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_21411 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000379",0.568071,15.25663,3.715971,16.68587,1.82487,16.11623,{"v":4.16572252153838e-08,"d":"4.17E-08"},2.86735143645514,"up","--","--","Biological Process: maltose metabolic process (GO:0000023);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: NADH dehydrogenase complex (plastoquinone) assembly (GO:0010258);; Cellular Component: NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: mRNA modification (GO:0016556);; Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (GO:0016655);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: positive regulation of catalytic activity (GO:0043085);; ","--","--","--","S","Function unknown","Os01g0882500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA036573",1.477598,11.587586,2.5569,19.15187354,1.2871431123,7.0528380058,0.00473281216195681,2.86092114757857,"up","[Z]","Cytoskeleton ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytoskeleton (GO:0005856);; ","K10355|0|osa:4337566|Os05g0106600; K10355 actin, other eukaryote (A)","--","Actin OS=Gossypium hirsutum (Upland cotton) PE=3 SV=1","Z","Cytoskeleton","hypothetical protein OsI_37581 [Oryza sativa Indica Group] "]
["gene:BGIOSGA032678",0.681173,5.92074,2.13242,8.74041,0.235392,7.07514,0.00314205511891598,2.8594950207887,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: protein autophosphorylation (GO:0046777);; ","--","--","--","S","Function unknown","Os10g0213700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011823",4.18305,25.9362,5.95723,34.8699,3.28602,38.9429,{"v":1.03256396064521e-16,"d":"1.03E-16"},2.844001733789,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Cytochrome P450 86B1 GN=CYP86B1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_09948 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021421",0.498209,6.59564,1.44375,6.73217,0.282633,3.48945,{"v":4.02305608352633e-05,"d":"4.02E-05"},2.84383580799445,"up","--","--","Molecular Function: glycine-tRNA ligase activity (GO:0004820);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: glycyl-tRNA aminoacylation (GO:0006426);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","--","UDP-glycosyltransferase 88A1 GN=UGT88A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_22594 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022258",1.46561,10.9269,2.29366,12.287,1.12311,14.9249,{"v":0.00017834053083328,"d":"1.78E-04"},2.84269182664746,"up","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14488|1.48043e-52|dosa:Os06t0137400-00|Os06g0137400, SAUR24, SMALL_AUXIN-UP_RNA_24; Hypothetical conserved gene.; K14488 SAUR family protein (A)","Plant hormone signal transduction (ko04075)","Auxin-induced protein 15A OS=Glycine max (Soybean) PE=2 SV=1","S","Function unknown","putative auxin-induced protein TGSAUR22 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA010068",0.1180754551,2.0348796,0.682156285104,0.82097362,0.3916873,1.9118870113214,0.00578360816880203,2.8357108898164,"up","--","--","--","--","--","--","S","Function unknown","Os03g0675300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017918",2.160270143707,12.3026406643,2.112020298082,21.26752,3.69312,21.82680645108,{"v":1.08202238341934e-06,"d":"1.08E-06"},2.83459633411681,"up","--","--","Molecular Function: copper ion binding (GO:0005507);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Laccase-12/13 (Precursor) GN=OJ1362_D02.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_20219 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033087",1.52977,7.05051,1.77626,12.8276,0.398278,9.79683,{"v":3.80127387026373e-07,"d":"3.80E-07"},2.83085443900428,"up","[IR]","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At4g28780 (Precursor) GN=At4g28780 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","hypothetical protein OsI_33925 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006614",2.24758,23.4422,8.12069,31.6321,1.18638,31.7367,{"v":1.77459765357932e-09,"d":"1.77E-09"},2.82695094392606,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: cell periphery (GO:0071944);; ","--","--","Fasciclin-like arabinogalactan protein 6 (Precursor) GN=FLA6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","Os02g0308400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029342",0.5842130495235,2.5909098,0.5959750832,6.972565,1.147164,6.474715,0.00443402252780603,2.82659045534441,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plastid (GO:0009536);; ","--","--","NEP1-interacting protein 1 GN=F4B14.110 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_32234 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018537",0.50879008329,6.9588951583,1.3734136397,4.8785261177,0.913432,6.614505,{"v":7.94119173090078e-09,"d":"7.94E-09"},2.81556962251247,"up","--","--","Molecular Function: glutathione synthase activity (GO:0004363);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: glutathione biosynthetic process (GO:0006750);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to jasmonic acid (GO:0009753);; ","K01920|0|bdi:100837821|glutathione synthetase, chloroplastic-like; K01920 glutathione synthase [EC:6.3.2.3] (A)","Glutathione metabolism (ko00480)","Glutathione synthetase, chloroplastic (Precursor) GN=GSH2 OS=Brassica juncea (Indian mustard) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_18978 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001853",0.419441,5.21734,0.849644,6.84806,0.833721,4.09603,{"v":2.21639626732082e-06,"d":"2.22E-06"},2.81111754417645,"up","--","--","Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","3&apos;-N-debenzoyl-2&apos;-deoxytaxol N-benzoyltransferase GN=TAX10 OS=Taxus canadensis (Canadian yew) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_01489 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025942",0.738054,2.09845,0.11199,3.60284,0.195521,1.98258,{"v":0.00032163226311168,"d":"3.22E-04"},2.80678988202394,"up","[GEPR]","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","Organic cation/carnitine transporter 2 GN=YUP8H12R.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_26480 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002221",1.87929,47.5823,13.4281,37.9408,0.396325,31.2099,{"v":1.47701448788047e-06,"d":"1.48E-06"},2.77979209104861,"up","--","--","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Stem 28 kDa glycoprotein (Precursor) GN=VSPA OS=Glycine max (Soybean) PE=2 SV=1","--","--","hypothetical protein OsI_00725 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015581",0.2162537,1.57052600080912,0.674625,2.1506072224,0.162304833528,2.261204757804,0.00632068658465768,2.77540053200081,"up","--","--","Molecular Function: ATP-dependent peptidase activity (GO:0004176);; Biological Process: proteolysis (GO:0006508);; Cellular Component: chloroplast (GO:0009507);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_14874 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011022",3.13547,12.7944,2.96436,21.1668,1.10034,21.4136,{"v":6.14071735536251e-09,"d":"6.14E-09"},2.7739381753909,"up","--","--","--","K18801|1.08992e-161|osa:4351745|Os12g0204500; K18801 glucuronoxylan 4-O-methyltransferase [EC:2.1.1.112] (A)","--","Glucuronoxylan 4-O-methyltransferase 1 GN=GXM1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_10920 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020897",1.49802,13.1346,3.20895,16.3766,1.47272,12.3724,{"v":1.11399604231004e-15,"d":"1.11E-15"},2.76296008021062,"up","[E]","Amino acid transport and metabolism ","Molecular Function: glycine dehydrogenase (decarboxylating) activity (GO:0004375);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: glycine cleavage complex (GO:0005960);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00281|0|osa:4325932|Os01g0711400; K00281 glycine dehydrogenase [EC:1.4.4.2] (A)","Glycine, serine and threonine metabolism (ko00260);; Carbon metabolism (ko01200)","Glycine dehydrogenase (decarboxylating) 2, mitochondrial (Precursor) GN=T19L18.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","E","Amino acid transport and metabolism","putative glycine dehydrogenase [Oryza sativa Japonica Group] "]
["gene:BGIOSGA025133",0.843756,10.1552,3.91045,11.7865,0.288521,11.8987,0.00174885153866668,2.75664658722537,"up","--","--","--","--","--","--","R","General function prediction only","hypothetical protein OsJ_23058 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA013650",0.093678990842,0.745764,0.148071478,0.8384072682,0.1836518153,1.1299599094,{"v":0.000312051349614752,"d":"3.12E-04"},2.75546565820378,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_13715 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029394",0.52228637474,6.254452,2.21027,7.77486,1.07206614997,8.13417262067,{"v":1.56748415745186e-06,"d":"1.57E-06"},2.74458279078653,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","Os09g0529300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA008621",0.110688,1.91275,0.564732,1.34504,0.0845952,1.65974,{"v":9.51287951105341e-05,"d":"9.51E-05"},2.74134816474504,"up","--","--","--","--","--","Filament-like plant protein 7 GN=FPP7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","S","Function unknown","hypothetical protein OsI_08064 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019234",0.264922,1.57968,0.451683,2.64734,0.0681049,1.16518,0.00146734851289948,2.73378595546217,"up","[TK]","--","Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: GTP diphosphokinase activity (GO:0008728);; Cellular Component: chloroplast (GO:0009507);; Biological Process: guanosine tetraphosphate metabolic process (GO:0015969);; ","--","--","Probable GTP diphosphokinase CRSH2, chloroplastic (Precursor) GN=OSJNBa0034O12.17 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_18566 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017081",0.796259,6.74188,1.89814,6.48815,0,6.47566,{"v":2.4118880569439e-06,"d":"2.41E-06"},2.72913300907343,"up","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","Anthranilate N-benzoyltransferase protein 3 GN=HCBT3 OS=Dianthus caryophyllus (Carnation) PE=1 SV=1","S","Function unknown","Os04g0609300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021117",0.863163,4.16981,1.17511,6.52112,0.762533,9.5825,{"v":0.000415857821513958,"d":"4.16E-04"},2.71512649765117,"up","[P]","Inorganic ion transport and metabolism ","Molecular Function: N,N-dimethylaniline monooxygenase activity (GO:0004499);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: NADP binding (GO:0050661);; ","--","--","Flavin-containing monooxygenase FMO GS-OX-like 9 GN=At5g07800 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_23222 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022555",8.75721,52.9998,12.7243,63.6845,4.36867,64.7344,{"v":6.88722628189792e-13,"d":"6.89E-13"},2.70894105562168,"up","--","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: electron transport chain (GO:0022900);; ","--","--","Blue copper protein (Precursor) OS=Pisum sativum (Garden pea) PE=2 SV=1","R","General function prediction only","Os06g0218600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA014920",0.359293,8.14511,0.625,8.72099,2.7631,8.53537,{"v":0.000300009108632859,"d":"3.00E-04"},2.70789530062886,"up","--","--","--","--","--","--","S","Function unknown","Os04g0468600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA024176",0.291416,1.40265,0.55559,2.98478,0.245954,2.87812,0.007265033958071,2.70362921323432,"up","--","--","--","--","--","--","--","--","hypothetical protein OsI_26311 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036127",0.649568,4.73373,1.71932,9.2412,0.692266,7.12598,{"v":0.000122908426592926,"d":"1.23E-04"},2.69919015328091,"up","--","--","Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","S","Function unknown","hypothetical protein OsI_38462 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018662",3.008779,28.67623,12.50499,44.761853,4.594818,56.124494393,{"v":0.000181200338134882,"d":"1.81E-04"},2.69553410030254,"up","--","--","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Acid phosphatase 1 (Precursor) GN=APS1 OS=Solanum lycopersicum (Tomato) PE=2 SV=1","R","General function prediction only","Os05g0190300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017694",0.401803,1.41355,0.465378,3.58763,0.449388,3.24556,0.00168783875162956,2.69413755021753,"up","--","--","Biological Process: metabolic process (GO:0008152);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","--","Anthocyanidin 5,3-O-glucosyltransferase GN=RhGT1 OS=Rosa hybrid cultivar PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_20704 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005674",0.929296,8.861436,2.51992193832,11.562299,1.060090762659,9.52170206676,{"v":1.64942245941405e-07,"d":"1.65E-07"},2.6801544749027,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At5g37690 (Precursor) GN=At5g37690 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","hypothetical protein OsI_08823 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010776",0.74543,5.27946,1.81854,8.33848,0.985097,11.0337,{"v":5.59121596721114e-05,"d":"5.59E-05"},2.67708255735664,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|sita:101786185|peroxidase 52-like; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 52 (Precursor) GN=K18I23.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_11488 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022435",1.61693,7.17661,0.60419,7.70029,1.33319,8.91813,{"v":5.60924901283973e-05,"d":"5.61E-05"},2.6718962521504,"up","[IQR]","--","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00059|3.11e-151|osa:4340334|Os06g0185100; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] (A)","Fatty acid biosynthesis (ko00061);; Biotin metabolism (ko00780);; Biosynthesis of unsaturated fatty acids (ko01040);; Fatty acid metabolism (ko01212)","Short-chain type dehydrogenase/reductase OS=Picea abies (Norway spruce) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_21942 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005220",0.838656,14.0413,4.07945,13.19306,1.366866,14.57865,{"v":5.88594568596184e-05,"d":"5.89E-05"},2.66231064717592,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: NADH dehydrogenase complex (plastoquinone) assembly (GO:0010258);; Cellular Component: NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598);; Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (GO:0016655);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","S","Function unknown","Os01g0959900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021980",0.12591,2.35971,0.866044,2.7525,0.331146,2.53672,{"v":0.000428143918082354,"d":"4.28E-04"},2.65389492088836,"up","[G]","Carbohydrate transport and metabolism ","Cellular Component: phosphopyruvate hydratase complex (GO:0000015);; Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: phosphopyruvate hydratase activity (GO:0004634);; Biological Process: glycolytic process (GO:0006096);; ","K01689|0|osa:4340042|Os06g0136600; K01689 enolase [EC:4.2.1.11] (A)","Glycolysis / Gluconeogenesis (ko00010);; Carbon metabolism (ko01200);; Biosynthesis of amino acids (ko01230);; RNA degradation (ko03018)","Enolase 1 GN=ENO1 OS=Zea mays (Maize) PE=1 SV=1","G","Carbohydrate transport and metabolism","Os06g0136600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA032762",9.79159,23.6889,0.512255,26.5377,0.655906,19.5885,0.00480793655732432,2.63985212026075,"up","--","--","Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_33212 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011125",0.507241000000497,4.68684,1.806545,16.02583,1.204601,7.77578,{"v":0.000883457807571533,"d":"8.83E-04"},2.63535989340871,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Proline-rich protein 4 (Precursor) GN=PRP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_10729 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013254",7.082177,63.419528,13.14707936,46.928475,6.6561180752,63.33596,{"v":7.36902974919621e-16,"d":"7.37E-16"},2.63145332380991,"up","[Z]","Cytoskeleton ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule (GO:0005874);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: microtubule-based process (GO:0007017);; Biological Process: protein polymerization (GO:0051258);; ","K07375|0|osa:4333632|Os03g0661300; K07375 tubulin beta (A)","Phagosome (ko04145)","Tubulin beta-8 chain OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Z","Cytoskeleton","hypothetical protein OsI_12886 [Oryza sativa Indica Group] "]
["gene:BGIOSGA001189",0.206939,2.99445,1.0006848,3.66274,0.47704,4.21063,{"v":0.000227718451305918,"d":"2.28E-04"},2.63111547756218,"up","--","--","Biological Process: response to toxic substance (GO:0009636);; Biological Process: response to salt stress (GO:0009651);; Biological Process: xenobiotic catabolic process (GO:0042178);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; ","--","--","Hydroquinone glucosyltransferase GN=AS OS=Rauvolfia serpentina (Serpentine wood) PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_02899 [Oryza sativa Indica Group]"]
["gene:BGIOSGA037321",5.63706,56.9599,27.59563,94.7538,5.76741,94.5495,{"v":2.10254268593174e-06,"d":"2.10E-06"},2.63024833459517,"up","--","--","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Acid phosphatase 1 (Precursor) GN=APS1 OS=Solanum lycopersicum (Tomato) PE=2 SV=1","--","--","hypothetical protein OsI_38160 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025130",5.75275,41.7605,12.93296,63.551,6.47573,54.6421,{"v":4.99231978517651e-08,"d":"4.99E-08"},2.62865501761438,"up","--","--","Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","Os07g0142200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA027743",9.07681,104.574,22.831,83.2879,9.62824,85.7023,{"v":1.74138442852654e-14,"d":"1.74E-14"},2.61266720909182,"up","--","--","Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast stromal thylakoid (GO:0009533);; Biological Process: plastid organization (GO:0009657);; Biological Process: photosystem II assembly (GO:0010207);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cysteine biosynthetic process (GO:0019344);; Cellular Component: chloroplast photosystem II (GO:0030095);; Molecular Function: manganese ion binding (GO:0030145);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; ","K02723|1.37218e-33|osa:4344539|Os08g0119800; K02723 photosystem II PsbY protein (A)","Photosynthesis (ko00195)","Photosystem II protein psbY-2, chloroplastic (Precursor) GN=PSBY OS=Spinacia oleracea (Spinach) PE=1 SV=2","G","Carbohydrate transport and metabolism","Os08g0119800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017312",2.72933,9.27367,1.66473,10.9624,0.475368,10.438,{"v":0.000152293696864949,"d":"1.52E-04"},2.60448814443378,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_17822 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018771",0.390077,2.87302,1.43585,5.51632,0.112911,2.86688,0.00496492371224348,2.5988705017995,"up","[E]","Amino acid transport and metabolism ","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Biological Process: proteolysis (GO:0006508);; ","K16297|0|osa:4337873|Os05g0158500; K16297 serine carboxypeptidase-like clade II [EC:3.4.16.-] (A)","--","Serine carboxypeptidase-like 33 (Precursor) GN=SCPL33 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_18545 [Oryza sativa Indica Group] "]
["gene:BGIOSGA023603",0.731791,10.8558,5.00182,13.8053,0.199626,13.3938,{"v":0.000621342195080085,"d":"6.21E-04"},2.59111214735024,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: mRNA modification (GO:0016556);; ","--","--","--","S","Function unknown","hypothetical protein OsI_24461 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015726",0.719741,8.22365,1.73209,12.1943,2.17465,7.63433,{"v":1.27197505776149e-06,"d":"1.27E-06"},2.58786373995441,"up","--","--","Biological Process: proteolysis (GO:0006508);; Biological Process: arginine catabolic process (GO:0006527);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; Biological Process: spermidine biosynthetic process (GO:0008295);; Molecular Function: arginine decarboxylase activity (GO:0008792);; Biological Process: putrescine biosynthetic process (GO:0009446);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Senescence-specific cysteine protease SAG39 {ECO:0000305} (Precursor) OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_14580 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022270",2.36411,11.6995,1.64653,9.97794,0.584492,7.77343,{"v":1.42893131555552e-05,"d":"1.43E-05"},2.5867937946408,"up","[K]","Transcription ","Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","Os06g0140400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA014689",0.170514,5.31116,0.950542,3.52629,1.14593,5.03571,{"v":8.47342552237098e-05,"d":"8.47E-05"},2.58427572362341,"up","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","--","UDP-glycosyltransferase 73D1 GN=UGT73D1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","G","Carbohydrate transport and metabolism","OSIGBa0153E02-OSIGBa0093I20.8 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022646",0.311407,2.2939,1.02941,4.23662,0.244236,2.84875,0.00147328558632355,2.58210574180231,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At5g37690 (Precursor) GN=At5g37690 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Os06g0257600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017082",1.60394,15.2919,4.29646,21.5954,2.83194,20.8742,{"v":1.41708233380582e-10,"d":"1.42E-10"},2.58052696095497,"up","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","Omega-hydroxypalmitate O-feruloyl transferase GN=MEE6.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os04g0609500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA033394",0.33587,2.55442,0.685933,3.71535,0.803444,4.30331,0.00785737731350735,2.57906271142402,"up","--","--","Cellular Component: plastid (GO:0009536);; Biological Process: pollen development (GO:0009555);; ","--","--","--","S","Function unknown","hypothetical protein OsI_34530 [Oryza sativa Indica Group] "]
["gene:BGIOSGA001992",14.5591,105.229,21.7535,131.656,17.9076,113.022,{"v":2.26463638847366e-14,"d":"2.26E-14"},2.576180304339,"up","[GR]","--","Molecular Function: superoxide dismutase activity (GO:0004784);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: manganese ion binding (GO:0030145);; Molecular Function: nutrient reservoir activity (GO:0045735);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Germin-like protein 5-1 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_01177 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028477",2.42353,12.4769,3.94942,15.0667,1.67717,23.2605,{"v":5.42182641509552e-05,"d":"5.42E-05"},2.56632509134809,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Cytochrome b561 and DOMON domain-containing protein At5g47530 (Precursor) GN=At5g47530 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_28840 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030115",0.125483134,0.7145204788332,0.458705095800002,1.32709677376,0.18665840260357,1.421385188579,0.00105783181688051,2.54018173643977,"up","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","Putative UPF0481 protein At3g02645 GN=At3g02645 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","hypothetical protein OsI_30632 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020764",1.21964,3.39065,0.677559,7.59627,0.920855,6.15347,0.00216203310766999,2.53574378526269,"up","--","--","Cellular Component: nucleus (GO:0005634);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","S","Function unknown","Os06g0653200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA015012",0.635097,5.212608979,1.8212300874573,6.59610562,0.785024,6.249261178,{"v":3.57830287750183e-06,"d":"3.58E-06"},2.53402658996604,"up","[IQ]","--","Molecular Function: 3-oxoacyl-[acyl-carrier-protein] synthase activity (GO:0004315);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: embryo development (GO:0009790);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: chloroplast fission (GO:0010020);; Cellular Component: membrane (GO:0016020);; ","K09458|0|dosa:Os04t0445700-01|Os04g0445700; Similar to OSIGBa0140O07.8 protein.; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] (A)","Fatty acid biosynthesis (ko00061);; Biotin metabolism (ko00780);; Fatty acid metabolism (ko01212)","3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor) GN=KAS12 OS=Hordeum vulgare (Barley) PE=1 SV=1","H","Coenzyme transport and metabolism","hypothetical protein OsI_16057 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017730",1.649134,8.47503,2.70463,12.00675,0.936333,13.70389,{"v":6.14071735536251e-09,"d":"6.14E-09"},2.52897598723361,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_20612 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001127",1.061615505,5.710262,1.65335722,7.178501605629,0.90125416,8.6499477769,{"v":6.71967028708647e-06,"d":"6.72E-06"},2.52682081732512,"up","[R]","General function prediction only ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","RecName: Full=Zinc finger CCCH domain-containing protein 9; Short=OsC3H9 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000392",0.711915,7.91473,1.80452,9.0765,2.08474,9.90108,{"v":7.11062750248476e-05,"d":"7.11E-05"},2.52366173914457,"up","[S]","Function unknown ","Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Molecular Function: ferrous iron binding (GO:0008198);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","4,5-DOPA dioxygenase extradiol GN=DODA OS=Beta vulgaris (Sugar beet) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_04653 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030354",6.11636,58.3816,15.6638,68.2713,6.71222,56.1152,{"v":1.23937944780239e-14,"d":"1.24E-14"},2.52184285085512,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","Fasciclin-like arabinogalactan protein 2 (Precursor) GN=FLA2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os09g0248100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021734",2.61553,23.2292,8.27005,25.0979,1.44592,27.3247,{"v":3.28251576060378e-07,"d":"3.28E-07"},2.51755182353513,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast stromal thylakoid (GO:0009533);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: peroxiredoxin activity (GO:0051920);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03564|1.52445e-123|osa:4340391|Os06g0196300; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] (A)","--","Peroxiredoxin Q, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os06g0196300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023719",1.36626,10.666,3.0669,12.3384,1.42787,11.5663,{"v":8.29882448957693e-06,"d":"8.30E-06"},2.51644576011085,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Cationic peroxidase 1 (Precursor) GN=PNC1 OS=Arachis hypogaea (Peanut) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_27331 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030824",0.522555,2.31736,0.625526,3.58145,0.415308,3.85785,0.00532505910496338,2.51554177480387,"up","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","--","--","--","S","Function unknown","Os09g0437100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021864",13.055,278.841483,62.1961,311.311,47.8001,141.701,{"v":0.000332502449354429,"d":"3.33E-04"},2.50648272891804,"up","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; Biological Process: cell proliferation (GO:0008283);; Cellular Component: plastid (GO:0009536);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11253|3.26679e-78|zma:103636448|histone H3.2; K11253 histone H3 (A)","--","Histone H3.2 OS=Triticum aestivum (Wheat) PE=1 SV=2","B","Chromatin structure and dynamics","histone H3, expressed [Triticum aestivum] "]
["gene:BGIOSGA007483",0.1914585,1.482118,0.72023,1.905817,0.1239581,2.43897,{"v":0.000354170994881024,"d":"3.54E-04"},2.50391165474676,"up","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Protein STRUBBELIG-RECEPTOR FAMILY 8 (Precursor) GN=SRF8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Os02g0136900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013671",2.23223,14.7185,6.00829,26.6051,1.95464,19.6319,{"v":0.000302075106881968,"d":"3.02E-04"},2.50077333258279,"up","--","--","Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","expressed protein [Oryza sativa Japonica Group]"]
["gene:BGIOSGA002902",0.361625,1.4543,0.324099,2.89792,0.43525200000000003,2.29421,0.00162373838216883,2.49815909588158,"up","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: electron transport chain (GO:0022900);; ","--","--","Alkane hydroxylase MAH1 {ECO:0000303|PubMed:17905869} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_00673 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022117",22.9326,261.689,66.4848,263.462,42.0405,249.314,{"v":2.44925412121667e-14,"d":"2.45E-14"},2.49013884267018,"up","[C]","Energy production and conversion ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to UV (GO:0009411);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: negative regulation of translation (GO:0017148);; Biological Process: electron transport chain (GO:0022900);; Biological Process: response to copper ion (GO:0046688);; Biological Process: copper ion homeostasis (GO:0055070);; ","K02638|1.34518e-83|osa:4339833|Os06g0101600; K02638 plastocyanin (A)","Photosynthesis (ko00195)","Plastocyanin, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","C","Energy production and conversion","Os06g0101600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA035660",1.55366,4.43667,0.861087,6.82141,0.40539,6.01511,{"v":0.000722366668764099,"d":"7.22E-04"},2.48689898364401,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|osa:4351067|Os11g0661600; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 1 (Precursor) GN=OJ1057_B02.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein OsI_36924 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016539",1.78681,26.5841,4.1847,26.0945,6.43006,20.2142,{"v":1.61397413309786e-10,"d":"1.61E-10"},2.47763396776567,"up","[G]","Carbohydrate transport and metabolism ","Biological Process: glucose metabolic process (GO:0006006);; Cellular Component: chloroplast (GO:0009507);; Biological Process: reductive pentose-phosphate cycle (GO:0019253);; Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity (GO:0047100);; Molecular Function: NADP binding (GO:0050661);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05298|0|osa:4336044|Os04g0459500; K05298 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13] (A)","Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Precursor) GN=GAPA OS=Zea mays (Maize) PE=2 SV=1","G","Carbohydrate transport and metabolism","Os04g0459500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004463",3.26502,21.77719,5.04074,22.11708,3.96627,22.40775,{"v":4.16417597932827e-14,"d":"4.16E-14"},2.46304996057879,"up","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: cell wall (GO:0005618);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to osmotic stress (GO:0006970);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: positive regulation of abscisic acid biosynthetic process (GO:0010116);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: defense response to fungus (GO:0050832);; ","K10999|0|osa:4324625|Os01g0750300; K10999 cellulose synthase A [EC:2.4.1.12] (A)","--","Cellulose synthase A catalytic subunit 4 [UDP-forming] GN=CESA4 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2","R","General function prediction only","RecName: Full=Cellulose synthase A catalytic subunit 4 [UDP-forming]; AltName: Full=OsCesA4 [Oryza sativa Indica Group] "]
["gene:BGIOSGA009280",0.890948146833,11.28826,3.20518117037,14.0077,1.5532708,15.21507,{"v":6.11520058523783e-07,"d":"6.12E-07"},2.45940438428727,"up","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; Biological Process: cysteine biosynthetic process (GO:0019344);; Cellular Component: ribonucleoprotein complex (GO:0030529);; ","--","--","29 kDa ribonucleoprotein B, chloroplastic (Precursor) OS=Nicotiana sylvestris (Wood tobacco) PE=2 SV=1","A","RNA processing and modification","hypothetical protein OsI_09422 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032917",0.377797,4.21442,0.597758,2.61145,1.15365,4.84337,0.00665624579821459,2.45332280165234,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","Chitinase 2 OS=Tulipa bakeri (Tulip) PE=1 SV=1","R","General function prediction only","Os10g0416500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA033874",2.2118,19.063,3.87596,23.4549,5.16294,23.2424,{"v":9.9794508128262e-11,"d":"9.98E-11"},2.45294672769918,"up","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to gravity (GO:0009629);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: chalcone biosynthetic process (GO:0009715);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: naringenin-chalcone synthase activity (GO:0016210);; Biological Process: regulation of anthocyanin biosynthetic process (GO:0031540);; ","K00660|0|osa:4350636|Os11g0530600; K00660 chalcone synthase [EC:2.3.1.74] (A)","Flavonoid biosynthesis (ko00941);; Circadian rhythm - plant (ko04712)","Chalcone synthase 1 GN=CHS1 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1","H","Coenzyme transport and metabolism","RecName: Full=Chalcone synthase 1; Short=OsCHS1; AltName: Full=Naregenin-chalcone synthase [Oryza sativa Indica Group] "]
["gene:BGIOSGA035490",0.873356,4.50362,1.43011,5.17689,0.262701,5.32389,{"v":4.66976318174058e-05,"d":"4.67E-05"},2.44074039813656,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","Glucan endo-1,3-beta-glucosidase 8 (Precursor) GN=At1g64760 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","hypothetical protein OsI_36575 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011042",0.26384,2.55536,0.0438817,2.63641,1.08645,2.51881,0.00296138946752969,2.43336778886799,"up","[G]","Carbohydrate transport and metabolism ","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: fructose-2,6-bisphosphate 2-phosphatase activity (GO:0004331);; Biological Process: sucrose metabolic process (GO:0005985);; Biological Process: fructose metabolic process (GO:0006000);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to blue light (GO:0009637);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: response to red light (GO:0010114);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; Cellular Component: stromule (GO:0010319);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: reductive pentose-phosphate cycle (GO:0019253);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: fructose 1,6-bisphosphate metabolic process (GO:0030388);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Molecular Function: fructose 1,6-bisphosphate 1-phosphatase activity (GO:0042132);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; Biological Process: divalent metal ion transport (GO:0070838);; ","K03841|0|osa:4332364|Os03g0267300; K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11] (A)","Glycolysis / Gluconeogenesis (ko00010);; Pentose phosphate pathway (ko00030);; Fructose and mannose metabolism (ko00051);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Fructose-1,6-bisphosphatase, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","Os03g0267300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000046",2.01879,11.7182,3.45483,10.9998,1.12054,15.1386,{"v":7.72675110103592e-05,"d":"7.73E-05"},2.4323897906674,"up","[S]","Function unknown ","Biological Process: maltose metabolic process (GO:0000023);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: cytochrome b6f complex assembly (GO:0010190);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: cell differentiation (GO:0030154);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K02221|3.70826e-117|osa:4324472|Os01g0966200; K02221 YggT family protein (A)","--","--","S","Function unknown","Os01g0966200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA015960",4.0650232083,20.275549,5.80255,19.3157100084,6.39759,25.95956,{"v":1.23632488538599e-05,"d":"1.24E-05"},2.43086364112071,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","OSJNBa0059D20.12 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA013347",0.4196108312,3.725283,1.033927,3.66095,0.4200254596,2.615052,0.00359028667124606,2.4261879960943,"up","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: RNA methylation (GO:0001510);; Molecular Function: RNA binding (GO:0003723);; Biological Process: RNA processing (GO:0006396);; Molecular Function: RNA methyltransferase activity (GO:0008173);; Cellular Component: plastid (GO:0009536);; ","K03437|0|osa:4333747|Os03g0685100; K03437 RNA methyltransferase, TrmH family (A)","--","--","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_13060 [Oryza sativa Indica Group]"]
["gene:BGIOSGA035974",0.640985,3.27712,0.740635,5.72732,0.828047,3.26599,0.00492264973444797,2.42492035542715,"up","--","--","--","--","--","--","S","Function unknown","Os12g0571300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA031811",1.3709,8.07,1.84329,5.03574,0.329666,4.45455,0.00792034815877767,2.42390635176745,"up","--","--","--","--","--","--","--","--","hypothetical protein OsI_33842 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029573",0.92514,3.998638,1.455353,8.10782,0.733625,6.11271,0.00101347459763563,2.42238882484582,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: iron ion binding (GO:0005506);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; ","--","--","--","S","Function unknown","Os09g0481800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA007558",5.81229,35.5508,5.87027,31.7021,3.493052,43.0078,{"v":2.5273270597503e-12,"d":"2.53E-12"},2.41716316814269,"up","[C]","Energy production and conversion ","Molecular Function: monooxygenase activity (GO:0004497);; Cellular Component: plastid (GO:0009536);; Biological Process: photorespiration (GO:0009853);; Biological Process: carbon fixation (GO:0015977);; Biological Process: photosynthesis (GO:0015979);; Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);; Biological Process: oxidation-reduction process (GO:0055114);; ","K01602|9.80277e-127|osa:4328326|Os02g0152400; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] (A)","Glyoxylate and dicarboxylate metabolism (ko00630);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Ribulose bisphosphate carboxylase small chain, chloroplastic (Precursor) GN=RBCS OS=Marchantia paleacea (Liverwort) PE=2 SV=1","G","Carbohydrate transport and metabolism","Os02g0152400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA028056",0.468628,3.15912,1.21262,3.57405,0.548101,5.28119,0.00480793655732432,2.41455867520823,"up","[S]","Function unknown ","Cellular Component: mitochondrion (GO:0005739);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: NAD(P)H dehydrogenase complex assembly (GO:0010275);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; ","--","--","--","S","Function unknown","Os08g0167500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000607",1.04209021488,5.18731691204,1.370336,5.0430723529,0.873399,6.322021,{"v":7.77901323682769e-06,"d":"7.78E-06"},2.41114906360418,"up","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: beta-glucosidase activity (GO:0008422);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K01188|0|dosa:Os01t0813700-01|Os01g0813700; Similar to Non-cyanogenic beta-glucosidase.; K01188 beta-glucosidase [EC:3.2.1.21] (A)","Cyanoamino acid metabolism (ko00460);; Starch and sucrose metabolism (ko00500);; Phenylpropanoid biosynthesis (ko00940)","Beta-glucosidase 3 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein OsI_04188 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036074",3.77742195821,16.8590501757,6.7977703033,29.7114170431,4.935264264,43.7972426453,0.00527298867667461,2.40463783350172,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|8.78118e-170|osa:4352399|Os12g0530100; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 39 (Precursor) GN=F8L21.80 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_38572 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018270",3.21454,20.3668,7.59465,33.3028,3.51421,29.6058,{"v":1.62410660213115e-05,"d":"1.62E-05"},2.40174539425178,"up","--","--","Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: metal ion transport (GO:0030001);; Biological Process: protein targeting to chloroplast (GO:0045036);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","R","General function prediction only","Os05g0337400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA009388",0.562999,2.83556,1.040887,3.677554,0.470181,5.07667,{"v":0.000202279047103129,"d":"2.02E-04"},2.39922247571676,"up","--","--","Molecular Function: copper ion binding (GO:0005507);; Biological Process: copper ion transport (GO:0006825);; ","--","--","Heavy metal-associated isoprenylated plant protein 26 (Precursor) GN=F20M13.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_14441 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025719",2.77911,15.24695,8.87988,26.6266,1.209976,31.6485,0.00126631670844114,2.39869397674658,"up","[C]","Energy production and conversion ","Biological Process: pentose-phosphate shunt (GO:0006098);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Cellular Component: NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: cellular cation homeostasis (GO:0030003);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; Biological Process: divalent metal ion transport (GO:0070838);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_26041 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033055",3.54802576,17.9288845738,5.743662693,21.290801729,2.38151423516,23.5294790142,{"v":5.83650844782383e-12,"d":"5.84E-12"},2.39144520897696,"up","--","--","Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","P","Inorganic ion transport and metabolism","hypothetical protein OsI_33828 [Oryza sativa Indica Group] "]
["gene:BGIOSGA020358",2.28827,16.9418,3.73547,28.5924,4.0548,12.5449,0.00225702009489128,2.38775856836964,"up","--","--","Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","Fasciclin-like arabinogalactan protein 13 (Precursor) GN=FLA13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsJ_19551 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA000608",0.2401275,1.240335,0.447830736,1.807730042,0.243220401199,1.2780671,0.00256536833910918,2.38597515168353,"up","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: beta-glucosidase activity (GO:0008422);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K01188|0|dosa:Os01t0813700-01|Os01g0813700; Similar to Non-cyanogenic beta-glucosidase.; K01188 beta-glucosidase [EC:3.2.1.21] (A)","Cyanoamino acid metabolism (ko00460);; Starch and sucrose metabolism (ko00500);; Phenylpropanoid biosynthesis (ko00940)","Beta-glucosidase 2 (Precursor) GN=BGLU2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_04187 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016179",0.493255,6.429719,5.256982,13.922018,0.8505126,9.472806,0.00326608562587946,2.38581086166419,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: fatty-acyl-CoA reductase (alcohol-forming) activity (GO:0080019);; ","K13356|7.70631e-108|dosa:Os04t0353600-01|Os04g0353600; Similar to OSIGBa0092G14.1 protein.; K13356 fatty acyl-CoA reductase [EC:1.2.1.-] (A)","Cutin, suberine and wax biosynthesis (ko00073);; Peroxisome (ko04146)","Alcohol-forming fatty acyl-CoA reductase OS=Simmondsia chinensis (Jojoba) PE=1 SV=1","I","Lipid transport and metabolism","hypothetical protein OsI_15478 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030638",2.08807,13.3407,3.23532,13.6444,2.06405,14.954,{"v":1.09168201277406e-07,"d":"1.09E-07"},2.37774692664041,"up","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","S","Function unknown","hypothetical protein OsI_31123 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011308",0.714192,3.81875,1.47964,5.64178,0.393818,4.20849,{"v":0.000428074706189135,"d":"4.28E-04"},2.37337443724436,"up","[C]","Energy production and conversion ","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00121|0|osa:4331894|Os03g0189600; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] (A)","Glycolysis / Gluconeogenesis (ko00010);; Fatty acid degradation (ko00071);; Tyrosine metabolism (ko00350);; Carbon metabolism (ko01200);; Degradation of aromatic compounds (ko01220)","Alcohol dehydrogenase-like 2 GN=At1g22440 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_10323 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005366",24.1613,186.59,46.5307,149.75,19.2644,151.45,{"v":2.62002952385452e-13,"d":"2.62E-13"},2.37105569379824,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At5g33370 (Precursor) GN=At5g33370 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_09436 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013106",1.40444,11.568,2.4985,9.89498,1.10574,5.469,{"v":0.000839401703139261,"d":"8.39E-04"},2.369759810801,"up","--","--","Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plastid (GO:0009536);; Molecular Function: protein kinase binding (GO:0019901);; Biological Process: cell division (GO:0051301);; ","K06627|0|osa:4333422|Os03g0607600; K06627 cyclin A (A)","--","Cyclin-A3-1 GN=OSJNBa0091E13.3 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","D","Cell cycle control, cell division, chromosome partitioning","hypothetical protein OsI_12575 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030814",4.0814709852,30.81813,6.21736,17.18646,3.904870177294,24.93720504321,{"v":1.01589191774051e-05,"d":"1.02E-05"},2.36457056063677,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_31488 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022003",1.81291,16.4294,4.82808,14.6629,1.88035,15.9727,{"v":3.5187886540398e-06,"d":"3.52E-06"},2.35928004392068,"up","[H]","Coenzyme transport and metabolism ","Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: photosynthesis (GO:0015979);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: methylation (GO:0032259);; Molecular Function: magnesium protoporphyrin IX methyltransferase activity (GO:0046406);; Biological Process: protein autophosphorylation (GO:0046777);; ","K03428|4.152e-129|osa:4340015|Os06g0132400; K03428 magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11] (A)","Porphyrin and chlorophyll metabolism (ko00860)","Magnesium protoporphyrin IX methyltransferase, chloroplastic (Precursor) GN=CHLM OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","H","Coenzyme transport and metabolism","hypothetical protein OsI_21498 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003026",0.798284,4.06650100000293,2.041165778,5.92347400014575,0.722193000001224,7.042441,{"v":6.02767922185316e-06,"d":"6.03E-06"},2.35887227500802,"up","[S]","Function unknown ","Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: chloroplast membrane (GO:0031969);; Biological Process: cellular response to water deprivation (GO:0042631);; ","--","--","GDT1-like protein 1, chloroplastic (Precursor) GN=OsI_00941 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=2","S","Function unknown","hypothetical protein OsI_00941 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004822",0.882261,4.864173305,1.433217766,5.23609445,0.42725,4.035672,{"v":1.98682878270278e-05,"d":"1.99E-05"},2.35376267096978,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: vacuole (GO:0005773);; Biological Process: fatty acid metabolic process (GO:0006631);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: suberin biosynthetic process (GO:0010345);; Molecular Function: alkane 1-monooxygenase activity (GO:0018685);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; Molecular Function: aromatase activity (GO:0070330);; ","K15401|0|osa:4324825|Os01g0854800; K15401 fatty acid omega-hydroxylase [EC:1.14.-.-] (A)","Cutin, suberine and wax biosynthesis (ko00073)","Cytochrome P450 86A1 GN=K19M22.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","Os01g0854800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011643",0.388895,3.43088,1.16017,3.32378,0.682738,5.35388,{"v":0.000614818725176178,"d":"6.15E-04"},2.35193321170856,"up","[FE]","--","Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);; Molecular Function: ATP binding (GO:0005524);; Biological Process: ribonucleoside monophosphate biosynthetic process (GO:0009156);; Biological Process: nucleotide biosynthetic process (GO:0009165);; Cellular Component: plastid (GO:0009536);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K00948|0|dosa:Os03t0100040-01|Os03g0100040; Similar to Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1).; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] (A)","Pentose phosphate pathway (ko00030);; Purine metabolism (ko00230);; Carbon metabolism (ko01200);; Biosynthesis of amino acids (ko01230)","Ribose-phosphate pyrophosphokinase 1 GN=PRS1 OS=Spinacia oleracea (Spinach) PE=2 SV=1","F","Nucleotide transport and metabolism","hypothetical protein OsI_09602 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022159",1.762433,5.0261,2.215434,7.50175,0.704613,11.59505,0.00751385132594976,2.35138249468272,"up","--","--","Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","WAT1-related protein At3g30340 GN=At3g30340 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_21331 [Oryza sativa Indica Group] "]
["gene:BGIOSGA025447",2.507474,16.35566,3.64928,19.79639,3.721301,16.5952,{"v":8.31381626245876e-08,"d":"8.31E-08"},2.35033655422802,"up","--","--","Cellular Component: plastid (GO:0009536);; Biological Process: starch biosynthetic process (GO:0019252);; ","--","--","--","S","Function unknown","Os07g0243150 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029563",1.48056,9.12046,2.95464,13.5029,2.07854,11.0585,{"v":1.48813355654041e-05,"d":"1.49E-05"},2.34555299122544,"up","--","--","--","--","--","Fasciclin-like arabinogalactan protein 7 (Precursor) GN=FLA7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","hypothetical protein OsI_31809 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021890",0.25194570442,2.106916029537,1.21069881752,2.7237239625,0.3891066416,4.12828165255,0.00172300745390014,2.34253528880812,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_21715 [Oryza sativa Indica Group]"]
["gene:BGIOSGA037300",0.570681,5.22597,1.26663,5.06554,0.92369,3.78948,{"v":0.000490840098655363,"d":"4.91E-04"},2.33993365417443,"up","[MG]","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: catalytic activity (GO:0003824);; Cellular Component: vacuole (GO:0005773);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: ribosome (GO:0005840);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: response to cold (GO:0009409);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to blue light (GO:0009637);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: photorespiration (GO:0009853);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: response to red light (GO:0010114);; Biological Process: response to chitin (GO:0010200);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; Cellular Component: plastoglobule (GO:0010287);; Molecular Function: heteropolysaccharide binding (GO:0010297);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Cellular Component: stromule (GO:0010319);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Cellular Component: membrane (GO:0016020);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: cell differentiation (GO:0030154);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: plastid translation (GO:0032544);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: positive regulation of translation (GO:0045727);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Cellular Component: apoplast (GO:0048046);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: defense response to fungus (GO:0050832);; ","--","--","Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic (Precursor) GN=T31J12.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","hypothetical protein OsI_38123 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018092",1.29044,12.1698,4.33842,13.5775,1.65593,12.3445,{"v":1.98272676516116e-05,"d":"1.98E-05"},2.3359127795182,"up","[R]","General function prediction only ","Molecular Function: acid phosphatase activity (GO:0003993);; Biological Process: rRNA processing (GO:0006364);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Biological Process: response to blue light (GO:0009637);; Biological Process: plastid organization (GO:0009657);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: response to red light (GO:0010114);; Biological Process: photosystem II repair (GO:0010206);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; ","--","--","UPF0603 protein Os05g0401100, chloroplastic (Precursor) GN=OSJNBa0035J16.9 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","S","Function unknown","Os05g0401100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012564",5.208330142407,35.77480915019,10.262078874,36.6777000000051,5.41494,43.5082116815,{"v":1.12754550734313e-07,"d":"1.13E-07"},2.33561935025961,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Biological Process: photosystem II repair (GO:0010206);; ","K08902|1.75604e-44|bdi:100827920|photosystem II repair protein PSB27-H1, chloroplastic; K08902 photosystem II Psb27 protein (A)","Photosynthesis (ko00195)","Photosystem II repair protein PSB27-H1, chloroplastic (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","hypothetical protein OsI_11439 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013370",1.3951,4.70703,1.58157,6.8429,0.971367,8.42735,{"v":5.55994056894055e-05,"d":"5.56E-05"},2.32522161560869,"up","--","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cell part (GO:0044464);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","Nucleobase-ascorbate transporter LPE1 GN=LPE1 OS=Zea mays (Maize) PE=1 SV=2","P","Inorganic ion transport and metabolism","Os03g0694500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA022829",0.97587980924,4.2419797334,1.19798800064037,6.45789364988,1.010519,4.8290134341,0.00204505441825427,2.32262993490838,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","--","--","hypothetical protein OsI_22806 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012812",2.40338,5.98215,1.58232,11.6451,2.09913,14.3937,0.00253826674654574,2.32103726490726,"up","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","RING-H2 finger protein ATL44 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_11924 [Oryza sativa Indica Group]"]
["gene:BGIOSGA038154",9.10453,67.6306,20.5466,78.3772,8.42726,46.3149,{"v":7.5198918394674e-07,"d":"7.52E-07"},2.3208611653779,"up","[C]","Energy production and conversion ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast ribulose bisphosphate carboxylase complex (GO:0009573);; Biological Process: response to blue light (GO:0009637);; Biological Process: photorespiration (GO:0009853);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: response to far red light (GO:0010218);; Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);; Biological Process: reductive pentose-phosphate cycle (GO:0019253);; Cellular Component: cytosolic ribosome (GO:0022626);; Cellular Component: thylakoid lumen (GO:0031977);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; ","K01602|6.13249e-127|osa:4352016|Os12g0291400; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] (A)","Glyoxylate and dicarboxylate metabolism (ko00630);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Ribulose bisphosphate carboxylase small chain A, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","C","Energy production and conversion","Os12g0291400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011161",6.81508764303,42.14999,15.127622,62.16606,9.2744400483,62.1597199765,{"v":3.65552395092685e-12,"d":"3.66E-12"},2.31694127697384,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to salt stress (GO:0009651);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: response to zinc ion (GO:0010043);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of growth (GO:0045926);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|osa:4332174|Os03g0234900; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 15 {ECO:0000303|PubMed:17936696} (Precursor) OS=Ipomoea batatas (Sweet potato) PE=1 SV=1","G","Carbohydrate transport and metabolism","Os03g0234900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029543",6.6905,23.7746,8.01815,42.9547,3.17196,21.9348,0.00277614805040122,2.31643791144232,"up","[G]","Carbohydrate transport and metabolism ","Cellular Component: mitochondrion (GO:0005739);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: beta-glucosidase activity (GO:0008422);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: pollen tube growth (GO:0009860);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K01188|0|osa:4347441|Os09g0491100; K01188 beta-glucosidase [EC:3.2.1.21] (A)","Cyanoamino acid metabolism (ko00460);; Starch and sucrose metabolism (ko00500);; Phenylpropanoid biosynthesis (ko00940)","Beta-glucosidase 30 (Precursor) GN=BGLU30 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_31852 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022878",1.164022,12.77176,4.231394,8.59301,0.989555,9.89873,{"v":3.08434537820853e-06,"d":"3.08E-06"},2.30891680820314,"up","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase EXL1 (Precursor) GN=EXL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein OsI_22891 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004050",0.36773252,2.7584288392973,1.27267595,3.7781054817893,0.7641641804,3.736113476,{"v":0.000116492189669558,"d":"1.16E-04"},2.3050084512595,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K08245|0|osa:4326588|Os01g0631900; K08245 phytepsin [EC:3.4.23.40] (A)","--","Aspartic proteinase oryzasin-1 (Precursor) GN=OJ1781_H11.11 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_02961 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031435",1.65664,4.05109,1.37003,5.24528,0.376267,8.829,0.0065539304286296,2.29166665176838,"up","--","--","--","--","--","--","R","General function prediction only","predicted protein [Hordeum vulgare subsp. vulgare]"]
["gene:BGIOSGA023745",0.660329,3.70606,0.767028,3.70899,0.646235,3.24926,0.00236131828645868,2.2915108376507,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At2g23540 (Precursor) GN=At2g23540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_27261 [Oryza sativa Indica Group] "]
["gene:BGIOSGA037023",0.1793126,1.760615,0.56099098,1.597517,0.30423930622,2.007062,0.00567311498352325,2.27790945720588,"up","[E]","Amino acid transport and metabolism ","Biological Process: amino acid transmembrane transport (GO:0003333);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to nematode (GO:0009624);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","Cationic amino acid transporter 7, chloroplastic (Precursor) GN=CAT7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","E","Amino acid transport and metabolism","hypothetical protein OsI_37534 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032117",0.292806,1.66824,0.639588,1.24823,0.045675,1.58498,0.00207461779871668,2.27342985257498,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: beta-galactosidase activity (GO:0004565);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: carbohydrate binding (GO:0030246);; Cellular Component: apoplast (GO:0048046);; ","--","--","Beta-galactosidase 14 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_33138 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005767",0.333786,4.673,1.20602,3.20796,0.806383,3.71384,0.00241599310368377,2.26955963695259,"up","[R]","General function prediction only ","Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_08629 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031495",0.559872,1.590852,0.63689953,3.378524,0.27503276855,2.677004,0.00153748378362923,2.26908496256834,"up","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","G","Carbohydrate transport and metabolism","hypothetical protein OsI_34462 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006301",32.2284,162.545,50.9349,176.048,16.5192,193.139,{"v":3.86261988711481e-12,"d":"3.86E-12"},2.26759389084753,"up","--","--","Cellular Component: plant-type cell wall (GO:0009505);; ","--","--","--","S","Function unknown","hypothetical protein OsJ_07042 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA003923",0.236269241564,1.22545659248,0.3401049,1.1853401006,0.25753295158,1.10825480802465,0.00721443673548865,2.26528547153033,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","Probable receptor-like protein kinase At2g42960 GN=At2g42960 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_02719 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011585",2.13391,14.7151,3.15125,8.9184,1.61138,12.6399,{"v":2.52197023237111e-05,"d":"2.52E-05"},2.26417872018962,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to wounding (GO:0009611);; ","--","--","Probable receptor-like protein kinase At1g33260 GN=At1g33260 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Os03g0113000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019868",13.796100755004,53.9379589,17.25530128863,86.53077,10.23010193098,65.626666,{"v":4.60228526852818e-09,"d":"4.60E-09"},2.26049617099361,"up","[Z]","Cytoskeleton ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: microtubule (GO:0005874);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: microtubule-based process (GO:0007017);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: protein polymerization (GO:0051258);; ","K07375|0|osa:4338790|Os05g0413200; K07375 tubulin beta (A)","Phagosome (ko04145)","Tubulin beta-6 chain OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Z","Cytoskeleton","hypothetical protein OsI_19960 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022791",2.351963126062,19.28908,11.56909,28.97364,1.72485126127,28.21539,{"v":1.01589191774051e-05,"d":"1.02E-05"},2.25862540728353,"up","--","--","--","--","--","--","--","--","hypothetical protein OsI_22736 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015144",3.388629,14.10266,4.59488,10.89003,3.01098,18.63666,{"v":0.000564258703638132,"d":"5.64E-04"},2.25385013960119,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","S","Function unknown","Os04g0408600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA037533",2.020378,13.42966,5.54522,15.15169,2.17830944,16.38751,{"v":5.37068404778542e-12,"d":"5.37E-12"},2.24369344941659,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation elongation factor activity (GO:0003746);; Biological Process: translational elongation (GO:0006414);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: ncRNA metabolic process (GO:0034660);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: response to cadmium ion (GO:0046686);; ","K02357|0|osa:4352441|Os12g0541500; K02357 elongation factor Ts (A)","--","Elongation factor Ts, chloroplastic GN=tsf OS=Rhodomonas salina (Cryptomonas salina) PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","Os12g0541500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA027744",1.3282358194,7.2664990804,1.565877978,7.3195571448,1.2406430897,6.348498501,{"v":4.61246952911876e-05,"d":"4.61E-05"},2.24092172146992,"up","--","--","--","--","--","Zinc finger protein CONSTANS-LIKE 6 GN=COL6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","hypothetical protein [Oryza sativa Japonica Group] "]
["gene:BGIOSGA006693",0.85176017,6.11219,2.40426,7.67581,1.099233,6.65217,{"v":4.01634915769761e-05,"d":"4.02E-05"},2.23687045319381,"up","[E]","Amino acid transport and metabolism ","Molecular Function: lactoylglutathione lyase activity (GO:0004462);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: stromule (GO:0010319);; Cellular Component: thylakoid lumen (GO:0031977);; Molecular Function: metal ion binding (GO:0046872);; ","K01759|0|bdi:100839008|probable lactoylglutathione lyase, chloroplast; K01759 lactoylglutathione lyase [EC:4.4.1.5] (A)","Pyruvate metabolism (ko00620)","Probable lactoylglutathione lyase, chloroplast (Precursor) GN=At1g67280 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_06754 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016865",10.4103,59.0839,18.096,72.3392,6.26406,47.5432,{"v":1.72778739961237e-08,"d":"1.73E-08"},2.23629235229834,"up","--","--","--","--","--","--","--","--","OSIGBa0101C23.5 [Oryza sativa Indica Group]"]
["gene:BGIOSGA040594",1.03627717581403,10.3942039751,3.1934919292,7.82408689,1.6100146943934,8.9906405542,{"v":2.16013784027286e-06,"d":"2.16E-06"},2.23198490691323,"up","[MG]","--","Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: mRNA modification (GO:0016556);; Biological Process: photosynthesis, light reaction (GO:0019684);; ","--","--","Protein TIC 62, chloroplastic (Precursor) GN=TIC62 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","Os10g0100300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012117",0.69024105326,5.71952170000001,1.61874200048223,4.39795006361069,1.16710296207817,5.95173110508463,{"v":6.36230271450448e-06,"d":"6.36E-06"},2.22996364317036,"up","--","--","Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule (GO:0005874);; Biological Process: cytoskeleton organization (GO:0007010);; Molecular Function: microtubule binding (GO:0008017);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: xylan biosynthetic process (GO:0045492);; ","--","--","Microtubule-associated protein 70-4 GN=OsJ_09915 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Z","Cytoskeleton","hypothetical protein OsI_10528 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036763",0.792344934,3.8805777,0.78995553537,6.68332,1.947543,3.97130246,{"v":0.000610905233083891,"d":"6.11E-04"},2.22843659860643,"up","--","--","Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to sucrose (GO:0009744);; Biological Process: response to UV-B (GO:0010224);; Biological Process: cellular modified amino acid biosynthetic process (GO:0042398);; Molecular Function: chalcone isomerase activity (GO:0045430);; Biological Process: response to karrikin (GO:0080167);; ","--","--","Probable chalcone--flavonone isomerase 3 GN=K18I23.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_37230 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032537",60.5911,247.451,97.8624,371.898,42.0431,348.366,{"v":1.53677573080621e-09,"d":"1.54E-09"},2.2245003801227,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Proline-rich protein 4 (Precursor) GN=PRP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_32758 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020347",21.998,152.588,54.0106,176.164,33.357,197.244,{"v":7.20677737629826e-10,"d":"7.21E-10"},2.22158784945938,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: photosystem I reaction center (GO:0009538);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: integral component of membrane (GO:0016021);; ","K02695|7.34896e-74|osa:4339593|Os05g0560000; K02695 photosystem I subunit VI (A)","Photosynthesis (ko00195)","Photosystem I reaction center subunit VI, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os05g0560000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA034434",337.0234,1736.183,740.187,2102.318,87.1429,1833.897,{"v":1.21802142919952e-09,"d":"1.22E-09"},2.21897533144932,"up","--","--","Biological Process: response to stress (GO:0006950);; ","--","--","--","R","General function prediction only","Os11g0167800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013879",0.107368,5.15164,2.23206,4.0464,0.154209,3.3214,0.00653785805303542,2.21651835376207,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; ","--","--","Probable glycerol-3-phosphate acyltransferase 3 GN=GPAT3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","Os03g0832800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005338",3.526630523666,17.251627,6.50618172279,23.412874,4.577160184264,23.92850110077,{"v":5.06579960744434e-08,"d":"5.07E-08"},2.21242815606725,"up","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: plastid large ribosomal subunit (GO:0000311);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Molecular Function: rRNA binding (GO:0019843);; Biological Process: ribosome biogenesis (GO:0042254);; ","K02939|2.47796e-99|osa:4331189|Os02g0822600; K02939 large subunit ribosomal protein L9 (A)","Ribosome (ko03010)","50S ribosomal protein L9, chloroplastic (Precursor) GN=RPL9 OS=Triticum aestivum (Wheat) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_09498 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023618",1.81933,7.38485,1.47982,9.53965,1.80621,8.74365,{"v":0.000490840098655363,"d":"4.91E-04"},2.20874116637905,"up","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: plant-type cell wall organization (GO:0009664);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Expansin-A29 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","S","Function unknown","hypothetical protein OsI_24488 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002993",2.1802682022,18.0380052155,3.3990502195,12.7075103254,3.822587987,14.133281,{"v":1.46822729664462e-06,"d":"1.47E-06"},2.20625961786122,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At5g45910 (Precursor) GN=At5g45910 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_00887 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031578",5.72214,30.1111,8.18192,24.781,6.39165,46.9254,{"v":0.000334921536573574,"d":"3.35E-04"},2.20544529892103,"up","--","--","--","--","--","21 kDa protein (Precursor) OS=Daucus carota (Wild carrot) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_34268 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023570",3.44194,23.02015,7.96858,25.4821,3.52455,24.3014,{"v":1.12754550734313e-07,"d":"1.13E-07"},2.20501116560941,"up","--","--","Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: defense response, incompatible interaction (GO:0009814);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: positive regulation of catalytic activity (GO:0043085);; ","--","--","Thylakoid lumenal 16.5 kDa protein, chloroplastic (Precursor) GN=At4g02530 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3","S","Function unknown","Os06g0705100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019051",31.36827,204.3134,46.65813,288.284,46.90834,139.57308,{"v":0.00016972088288455,"d":"1.70E-04"},2.19660567992717,"up","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleolus (GO:0005730);; Biological Process: nucleosome assembly (GO:0006334);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11251|9.13875e-65|osa:4337607|Os05g0113900; K11251 histone H2A (A)","--","Probable histone H2A.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","B","Chromatin structure and dynamics","hypothetical protein OsI_18189 [Oryza sativa Indica Group] "]
["gene:BGIOSGA011592",3.28855,33.78016,14.66872,33.62652,5.38756,39.0904,{"v":5.19629078388544e-09,"d":"5.20E-09"},2.19431152279094,"up","--","--","Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; ","--","--","Remorin OS=Solanum tuberosum (Potato) PE=1 SV=1","S","Function unknown","Os03g0111200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA003471",0.442082,1.84067,0.708025,1.69617,0.147815,2.0586,0.00720003157671964,2.19085562250832,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_01823 [Oryza sativa Indica Group]"]
["Rice_newGene_1272",0.785889,6.52005,3.35633,8.10295,1.1384,8.64132,0.00277614805040122,2.18722205362955,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","Zinc finger BED domain-containing protein RICESLEEPER 3 GN=OSJNBb0035N21.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","L","Replication, recombination and repair","Os03g0563400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA020820",1.977886,14.22208,3.008961,15.33104,3.034413,10.6532,{"v":2.76266995516396e-06,"d":"2.76E-06"},2.18721948335054,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At4g26790 (Precursor) GN=At4g26790 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_23823 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001953",0.293861386006199,1.5351638412,0.345153018641879,0.958876,0.452285853719615,1.41298278,0.00129149748388085,2.18554544699411,"up","[Z]","Cytoskeleton ","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","--","--","Kinesin-like calmodulin-binding protein GN=K14B20.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","hypothetical protein OsI_01258 [Oryza sativa Indica Group]"]
["gene:BGIOSGA007121",1.238958905,8.136077,3.648512,10.100724,1.677164,11.14097,{"v":4.89131063389759e-05,"d":"4.89E-05"},2.18236823902339,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_05889 [Oryza sativa Indica Group] "]
["gene:BGIOSGA012402",4.12162,41.0695,16.61027,38.5437,6.5114,47.1425,{"v":7.65642116297206e-09,"d":"7.66E-09"},2.1679747888359,"up","--","--","Biological Process: maltose metabolic process (GO:0000023);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: glucosinolate metabolic process (GO:0019760);; Biological Process: positive regulation of catalytic activity (GO:0043085);; ","--","--","--","S","Function unknown","hypothetical protein OsI_11120 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022191",1.77246,11.3012,3.99127,12.4931,1.82115,11.1932,{"v":0.000548416626167466,"d":"5.48E-04"},2.16626072840775,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029450",0.1365826352342,4.49085989045243,2.2142583574,3.80686733553362,0.535341171640508,3.492745243,0.0041905472823264,2.1642320222033,"up","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: beta-glucosidase activity (GO:0008422);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K01188|0|osa:4347547|Os09g0511900; K01188 beta-glucosidase [EC:3.2.1.21] (A)","Cyanoamino acid metabolism (ko00460);; Starch and sucrose metabolism (ko00500);; Phenylpropanoid biosynthesis (ko00940)","Probable inactive beta-glucosidase 33 (Precursor) GN=BGLU33 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein OsI_32017 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016498",1.26261,4.83488,1.26898,5.70489,0.613406,4.53872,0.00110691085224234,2.16108379232929,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plastid (GO:0009536);; ","--","--","Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_16079 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021491",8.28625,97.3069,30.2503,90.9214,20.7105,80.38,{"v":2.7046358216535e-07,"d":"2.70E-07"},2.15156531328079,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","Protein CURVATURE THYLAKOID 1A, chloroplastic (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os06g0264800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA030321",4.46923,17.55848,6.29278,23.03582,2.672472,23.98197,{"v":4.48873552370312e-08,"d":"4.49E-08"},2.14493626424969,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At2g42990 (Precursor) GN=At2g42990 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","GDSL-motif lipase/hydrolase-like [Oryza sativa Japonica Group] "]
["gene:BGIOSGA010010",26.4583,76.236,36.926,167.2493,17.79168,127.907,0.00104352449545904,2.14079203758559,"up","--","--","Cellular Component: vacuole (GO:0005773);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_13105 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019392",0.425548300000147,1.608172803127,0.375267925,1.48216928033,0.41079723619,1.783016138258,0.00820285095222561,2.13099453825059,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","--","--","hypothetical protein OsI_18952 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023954",9.0973,48.9493,16.3103,55.606,8.58429,60.4909,{"v":5.33546386009619e-06,"d":"5.34E-06"},2.12583802985034,"up","--","--","--","--","--","--","--","--","--"]
["gene:BGIOSGA022345",130.6057,473.1741,167.0774,576.653,93.2228,732.654,{"v":1.60069354895583e-07,"d":"1.60E-07"},2.12174308042277,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At5g45910 (Precursor) GN=At5g45910 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","hypothetical protein OsI_21741 [Oryza sativa Indica Group]"]
["gene:BGIOSGA024493",0.602389,2.77598,1.34129,4.15786,0.599346,4.32467,0.00789948546218135,2.11889042840475,"up","--","--","--","--","--","WEB family protein At3g51220 GN=At3g51220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_25599 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003773",0.646354816001096,2.5652614211229,1.6595306172,2.45033046674,0.219398986,2.4648009356,{"v":7.72675110103592e-05,"d":"7.73E-05"},2.11447981019657,"up","--","--","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Molecular Function: FK506 binding (GO:0005528);; Biological Process: protein folding (GO:0006457);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_02447 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014589",0.84254980458,5.671023951,2.8988183051,7.56041729029,0.795736303,5.628681852,0.00177544698135314,2.11347722755658,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: structural molecule activity (GO:0005198);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","Probable plastid-lipid-associated protein 11 GN=F6N15.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_16907 [Oryza sativa Indica Group]"]
["gene:BGIOSGA007095",0.587763,3.61671,1.16322,5.09599,1.0892,4.97902,0.00344021528062173,2.10825395773546,"up","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","Protein IRX15-LIKE GN=IRX15-L OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_05925 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002308",0.951619,4.21743,2.248178,7.58771,1.170609,8.76049,{"v":0.000711756495817173,"d":"7.12E-04"},2.10650229014749,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_00563 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010448",31.5417059033,145.029204,61.3773535054,210.848720000004,32.3063801798,196.202162000002,{"v":1.30901936904903e-10,"d":"1.31E-10"},2.08945552649839,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Biological Process: translation (GO:0006412);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: small ribosomal subunit (GO:0015935);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: protein targeting to chloroplast (GO:0045036);; Biological Process: response to cadmium ion (GO:0046686);; ","K02988|3.09656e-147|osa:4333233|Os03g0452300; K02988 small subunit ribosomal protein S5 (A)","Ribosome (ko03010)","30S ribosomal protein S5, chloroplastic (Precursor) GN=rps5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","Os03g0452300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA035229",0.345346,3.15945,1.49968,2.94295,0.305813,2.87437,0.007265033958071,2.08905594082137,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: chitinase activity (GO:0004568);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chitin catabolic process (GO:0006032);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K01183|0|osa:4350476|Os11g0462100; K01183 chitinase [EC:3.2.1.14] (A)","Amino sugar and nucleotide sugar metabolism (ko00520)","--","G","Carbohydrate transport and metabolism","Os11g0462100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA003212",4.49135,14.9131,5.46198,20.8292,1.8729,18.2994,{"v":0.000632496500082638,"d":"6.32E-04"},2.08738199606014,"up","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: response to osmotic stress (GO:0006970);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cellular process (GO:0009987);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: response to karrikin (GO:0080167);; ","K16282|6.80375e-50|osa:4324371|Os01g0266100; K16282 E3 ubiquitin-protein ligase RHA2 [EC:6.3.2.19] (A)","--","Probable E3 ubiquitin-protein ligase RHA2B GN=RHA2B OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","Os01g0266100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA030594",0.536753483,2.97383503114779,0.93088818043,2.48518919181043,0.497030366,2.55579145199861,0.00115192629854211,2.08178501792111,"up","[HQ]","--","Molecular Function: isochorismate synthase activity (GO:0008909);; Cellular Component: plastid (GO:0009536);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: stomatal movement (GO:0010118);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: phylloquinone biosynthetic process (GO:0042372);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: defense response to fungus (GO:0050832);; ","K02552|0|bdi:100833004|isochorismate synthase 1, chloroplastic-like; K02552 menaquinone-specific isochorismate synthase [EC:5.4.4.2] (A)","Ubiquinone and other terpenoid-quinone biosynthesis (ko00130)","Isochorismate synthase 2, chloroplastic (Precursor) GN=ICS2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","H","Coenzyme transport and metabolism","hypothetical protein OsI_31053 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005975",2.41236,5.91559,2.00031,12.4154,1.96941,10.2856,0.00161705742986737,2.0788256932782,"up","--","--","--","--","--","GEM-like protein 4 GN=At5g08350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Os02g0636600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA025002",6.59725,32.85291,11.90566,42.9492,6.8887,44.8884,{"v":3.06097729894531e-09,"d":"3.06E-09"},2.07876956563463,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|obr:102714023|peroxidase 1-like; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 1 (Precursor) GN=OJ1057_B02.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein OsI_24583 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002928",3.01369,10.2012,2.22177,11.9467,1.00848,6.90657,{"v":2.13224054730627e-05,"d":"2.13E-05"},2.07329592723005,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_00721 [Oryza sativa Indica Group]"]
["gene:BGIOSGA034397",2.45553,9.54229,2.32791,12.6342,1.94735,8.74357,0.00188450718887737,2.06384227299366,"up","--","--","Cellular Component: cell wall (GO:0005618);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Dirigent protein 20 (Precursor) GN=DIR20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","hypothetical protein OsI_35333 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014769",3.26305,15.4822,3.95953,19.3852,2.42173,9.73028,{"v":0.000753773197073026,"d":"7.54E-04"},2.06293484744504,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_16546 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020783",2.995309,21.896392,7.4776,15.355645,2.610146,16.33035,{"v":3.61717704205759e-07,"d":"3.62E-07"},2.05853394001728,"up","--","--","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Cellular Component: lysosome (GO:0005764);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; ","K01285|0|osa:4341667|Os06g0647400; K01285 lysosomal Pro-X carboxypeptidase [EC:3.4.16.2] (A)","--","Probable serine protease EDA2 (Precursor) GN=EDA2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_23902 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015623",2.67703,6.88875,3.64053,12.2069,0.507336,11.8,0.0017514883161766,2.05462779353418,"up","--","--","--","--","--","Glucan endo-1,3-beta-glucosidase (Precursor) OS=Prunus avium (Cherry) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_14801 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022421",0.589958,3.4286,1.15825,2.98187,0.27798,2.47397,0.00508246084742812,2.04889435143635,"up","--","--","--","--","--","Putative UPF0481 protein At3g02645 GN=At3g02645 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","hypothetical protein OsI_21895 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029972",0.642618,2.54066,0.783761,4.62845,0.885162,2.40336,0.00496633882641819,2.04793915160673,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","--","UDP-glycosyltransferase 90A1 GN=UGT90A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_30915 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020317",18.1287,80.6104,12.0027,64.9057,8.69466,42.9129,0.0019130991326507,2.04708800678694,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Non-specific lipid-transfer protein 2 (Precursor) GN=LTP-2 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=2","R","General function prediction only","Os05g0550300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023951",3.22847,18.8636,10.4048,33.7269,2.8817,24.2928,0.00489070482279457,2.04153063768783,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","Os07g0600200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026869",88.907,544.85,281.507,686.54,81.5743,753.725,{"v":1.12754550734313e-07,"d":"1.13E-07"},2.04089693583169,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: manganese ion binding (GO:0030145);; Molecular Function: nutrient reservoir activity (GO:0045735);; Cellular Component: apoplast (GO:0048046);; ","--","--","Germin-like protein 8-14 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","R","General function prediction only","Os08g0460000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA032003",0.353158,1.52857,0.353254,1.54579,0.288647,0.826335,0.00923080461877144,2.03653208513412,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=2","R","General function prediction only","RecName: Full=Zinc finger CCCH domain-containing protein 62; Short=OsC3H62 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000134",0.772619000008914,3.1401008,1.1408200000001,5.85232,1.477413,5.80609,0.00127801475690111,2.03028895693143,"up","--","--","--","--","--","--","--","--","hypothetical protein OsI_05152 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012602",30.9924,142.129,49.1943,168.027,23.01,163.727,{"v":1.1858516697922e-08,"d":"1.19E-08"},2.02966416453613,"up","--","--","--","--","--","--","--","--","--"]
["gene:BGIOSGA021053",49.0706108198,244.310022343,98.3586297152,301.773536351,49.6542316709,310.483432142,{"v":1.58525995174372e-09,"d":"1.59E-09"},2.02939254074025,"up","--","--","--","--","--","Protodermal factor 1 (Precursor) GN=PDF1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_23340 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001206",0.928996,4.98264,1.53298,5.1182,0.473828,3.46045,{"v":0.000499126269349165,"d":"4.99E-04"},2.02807714533946,"up","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: transport (GO:0006810);; Cellular Component: plastid (GO:0009536);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Cellular Component: ATP-binding cassette (ABC) transporter complex (GO:0043190);; ","--","--","ABC transporter G family member 10 GN=F12M16.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_02862 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021590",0.667238,2.230354,0.760783,2.572453,0.2868601967,3.28188,0.00408193354130518,2.02637882537585,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","Protein ALTERED XYLOGLUCAN 4-like GN=MMG15.18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_22295 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030618",1.78437,14.5405,4.92624,14.3059,5.61019,27.3057,0.00758119151285793,2.02352997981912,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","unknown protein [Oryza sativa Japonica Group] "]
["gene:BGIOSGA025151",1.31113,4.14835,1.35787,6.00091,1.57996,9.01174,0.00222823069921575,2.02210115732983,"up","--","--","Biological Process: flavonoid biosynthetic process (GO:0009813);; Molecular Function: UDP-glucosyltransferase activity (GO:0035251);; Biological Process: pigment biosynthetic process (GO:0046148);; ","--","--","Anthocyanidin 3-O-glucosyltransferase GN=BZ1 OS=Zea mays (Maize) PE=3 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_24897 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013686",1.0586454892,19.7995421122,6.66669,15.26429,2.4365891714,11.36607,{"v":1.62251316726822e-05,"d":"1.62E-05"},2.02135747843687,"up","[C]","Energy production and conversion ","Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: peroxisome (GO:0005777);; Molecular Function: glycolate oxidase activity (GO:0008891);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: oxidative photosynthetic carbon pathway (GO:0009854);; Biological Process: regulation of photosynthesis (GO:0010109);; Molecular Function: FMN binding (GO:0010181);; Cellular Component: membrane (GO:0016020);; Biological Process: modulation by virus of host morphology or physiology (GO:0019048);; Cellular Component: cytosolic ribosome (GO:0022626);; Cellular Component: apoplast (GO:0048046);; Molecular Function: very-long-chain-(S)-2-hydroxy-acid oxidase activity (GO:0052852);; Molecular Function: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity (GO:0052853);; Molecular Function: medium-chain-(S)-2-hydroxy-acid oxidase activity (GO:0052854);; Biological Process: oxidation-reduction process (GO:0055114);; ","K11517|0|osa:4334349|Os03g0786100; K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] (A)","Glyoxylate and dicarboxylate metabolism (ko00630);; Peroxisome (ko04146)","Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","C","Energy production and conversion","Os03g0786100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA036496",6.42499,24.8399,9.65748,32.6501,3.70428,29.1196,{"v":1.34755085741507e-06,"d":"1.35E-06"},2.02078260191381,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|osa:4351703|Os12g0191500; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 43 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","G","Carbohydrate transport and metabolism","Os12g0191500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012007",79.025,341.5615,118.5163,367.1124,36.00913,316.6554,{"v":1.0662493609368e-08,"d":"1.07E-08"},2.01964484993332,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: apoplast (GO:0048046);; ","--","--","Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_10302 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000633",8.53397,42.8033,17.958,62.5738,9.41101,49.0632,{"v":6.56084350738375e-05,"d":"6.56E-05"},2.01938035576987,"up","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: plastid (GO:0009536);; Biological Process: ribosome biogenesis (GO:0042254);; ","K02914|4.01961e-62|dosa:Os01t0805000-01|Os01g0805000; 50S ribosomal protein L34.; K02914 large subunit ribosomal protein L34 (A)","Ribosome (ko03010)","50S ribosomal protein L34, chloroplastic (Precursor) GN=RPL34 OS=Spinacia oleracea (Spinach) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","putative plastid ribosomal protein L34 precursor [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013262",2.85164,12.1574,6.31233,18.0463,2.47836,19.8933,{"v":0.000882848203882127,"d":"8.83E-04"},2.01546988021063,"up","--","--","Biological Process: proteolysis (GO:0006508);; Molecular Function: peptidase activity (GO:0008233);; ","--","--","--","R","General function prediction only","Os03g0664400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013661",1.94255395053,11.16618498713,3.120447881934,16.540961481,3.8140539458,6.37544300009936,0.00491036275202372,2.01500232602329,"up","--","--","Cellular Component: plasmodesma (GO:0009506);; Cellular Component: membrane (GO:0016020);; ","--","--","--","S","Function unknown","hypothetical protein [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019034",3.468671,19.92462,7.597202,24.91838,5.46198,20.688302,{"v":1.8772473473939e-07,"d":"1.88E-07"},2.01072933398123,"up","[MG]","--","Biological Process: polysaccharide catabolic process (GO:0000272);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: rRNA processing (GO:0006364);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Molecular Function: isomerase activity (GO:0016853);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: defense response to bacterium (GO:0042742);; Cellular Component: apoplast (GO:0048046);; ","--","--","Uncharacterized protein At2g37660, chloroplastic (Precursor) GN=At2g37660 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein OsI_18159 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018706",1.90389,11.7401,2.59838,7.18381,1.61631,7.18094,0.00312566224304131,2.00532102533254,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","Os05g0178000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA031611",0.774727345397284,4.2322160864607,1.1231081,5.6894066,1.22442235364926,3.181953,0.00173725668050532,2.00519865768183,"up","--","--","--","K10436|0|osa:4349023|Os10g0498900; K10436 microtubule-associated protein, RP/EB family (A)","--","Microtubule-associated protein RP/EB family member 1C GN=EB1C OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","Os10g0498900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011341",0.743832,4.24531,1.351839,6.82979,1.505819,4.51386,0.0031153050810444,1.99851353726085,"up","[R]","General function prediction only ","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","R","General function prediction only","Os03g0178400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA020356",0.845731,5.17744,1.61028,6.41953,2.1611,7.63652,0.00219771409300911,1.99796044691228,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","NAC domain-containing protein 8 GN=NAC008 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_20979 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003257",19.9312,79.5607,35.9529,104.305,13.3185,95.0531,{"v":6.31778053934099e-05,"d":"6.32E-05"},1.9963207571441,"up","--","--","Cellular Component: ribosome (GO:0005840);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: plastid translation (GO:0032544);; ","--","--","--","J","Translation, ribosomal structure and biogenesis","Os01g0278900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA035960",4.25244,35.8452,9.62105,25.1548,9.5873,36.0612,{"v":4.84244415824596e-06,"d":"4.84E-06"},1.98878117768601,"up","--","--","Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: response to karrikin (GO:0080167);; ","--","--","--","S","Function unknown","hypothetical protein OsI_38846 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013815",10.93891,38.6467,20.3905,52.2924,8.17433,60.06,{"v":1.05300023410593e-05,"d":"1.05E-05"},1.98794501525358,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; ","K02879|1.83483e-137|osa:4334555|Os03g0815400; K02879 large subunit ribosomal protein L17 (A)","Ribosome (ko03010)","50S ribosomal protein L17, chloroplastic (Precursor) GN=RPL17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Os03g0815400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA037603",2.14430887416,7.935199,4.349718072,9.98688882,1.565878599,12.662468205,0.00123843044858356,1.98382733806469,"up","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: photosystem II oxygen evolving complex (GO:0009654);; Cellular Component: extrinsic component of membrane (GO:0019898);; Cellular Component: chloroplast photosystem II (GO:0030095);; Biological Process: photosystem I assembly (GO:0048564);; ","--","--","PsbP domain-containing protein 1, chloroplastic (Precursor) GN=PPD1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os12g0564400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA035986",1.522838,11.15007,2.65141,7.75471,2.106405,5.525494,0.00245115903605986,1.98053336934867,"up","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09422|9.69235e-158|osa:4352559|Os12g0567300; K09422 myb proto-oncogene protein, plant (A)","--","Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","hypothetical protein OsI_38769 [Oryza sativa Indica Group]"]
["gene:BGIOSGA024076",47.5331,304.446,118.198,303.86,54.0135,351.546,{"v":1.53677573080621e-09,"d":"1.54E-09"},1.97612584377537,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_26505 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032282",228.326,794.241,355.841,1100.34,140.951,1126.4,{"v":3.04696145485751e-08,"d":"3.05E-08"},1.97421435603778,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Proline-rich protein 4 (Precursor) GN=PRP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_32757 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031549",6.21578,35.0437,11.3045,36.9167,8.37904,40.7249,{"v":2.57205634163756e-07,"d":"2.57E-07"},1.97021782381144,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsJ_32168 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA038191",0.978140477,3.203322,1.82815634372,5.725536,0.729378422969,5.306262,0.00413167457029387,1.96877306861809,"up","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: catalytic activity (GO:0003824);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: chloroplast fission (GO:0010020);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: cell division (GO:0051301);; ","K07071|0|osa:4331275|Os02g0834700; K07071 (A)","--","Epimerase family protein SDR39U1 homolog, chloroplastic {ECO:0000305} (Precursor) GN=F3K23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","F","Nucleotide transport and metabolism","Os02g0834700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA030792",8.3173,37.13437,19.72117,63.29942,7.67768439,48.98225,{"v":3.97003019066249e-05,"d":"3.97E-05"},1.96453664866296,"up","--","--","Biological Process: very long-chain fatty acid metabolic process (GO:0000038);; Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: cuticle hydrocarbon biosynthetic process (GO:0006723);; Biological Process: wax biosynthetic process (GO:0010025);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: alkane biosynthetic process (GO:0043447);; Biological Process: pollen sperm cell differentiation (GO:0048235);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Protein ECERIFERUM 3 GN=MTI20.3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","Os09g0426800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA037790",2.46615,7.42664,3.31984,10.9146,1.36884,13.1787,{"v":4.32172544380987e-05,"d":"4.32E-05"},1.96374797416056,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plastid (GO:0009536);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: flower development (GO:0009908);; Biological Process: positive gravitropism (GO:0009958);; Cellular Component: cell surface (GO:0009986);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: root hair initiation (GO:0048766);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cotyledon development (GO:0048825);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of auxin polar transport (GO:2000012);; ","--","--","Protein kinase PINOID GN=PID OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","Os12g0614600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA008181",0.953266,2.18089,0.744273,1.751343,{"v":6.47774e-19,"d":"6.48E-19"},1.698122,0.00524535999323026,1.96301954480751,"up","--","--","--","--","--","Pentatricopeptide repeat-containing protein At5g18475 GN=At5g18475 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_07159 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008761",93.1212,496.442,216.208,448.943,23.0732,386.584,{"v":6.43823974859205e-06,"d":"6.44E-06"},1.96031667654037,"up","--","--","Molecular Function: structural molecule activity (GO:0005198);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Putative lipid-binding protein At4g00165 (Precursor) GN=At4g00165 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Os02g0662100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002948",0.543249,6.81165,2.23653,10.5155,3.24645,8.06524,0.00524535999323026,1.95974868718904,"up","--","--","--","--","--","Lachrymatory-factor synthase (Precursor) GN=LFS OS=Allium cepa (Onion) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_00777 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033565",6.24006,28.2871,12.5305,19.7961,2.835,36.8434,0.00297875985317826,1.95958293252737,"up","--","--","Biological Process: trichome morphogenesis (GO:0010090);; Cellular Component: apoplast (GO:0048046);; ","--","--","--","S","Function unknown","hypothetical protein OsI_36966 [Oryza sativa Indica Group] "]
["gene:BGIOSGA028706",44.1778,159.228,45.3866,254.455,36.9102,104.523,0.00924935727188154,1.95680876669786,"up","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Biological Process: nucleosome assembly (GO:0006334);; Biological Process: DNA mediated transformation (GO:0009294);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to bacterium (GO:0009617);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11251|6.07343e-47|dosa:Os08t0427700-00|Os08g0427700; Histone H2A.; K11251 histone H2A (A)","--","Probable histone H2A.3 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","B","Chromatin structure and dynamics","RecName: Full=Probable histone H2A.3 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029259",0.324565961,3.93595,1.690194,3.07888,1.041469,5.2578,0.00562241656454331,1.9526946449752,"up","--","--","Biological Process: proteolysis (GO:0006508);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Thiol protease SEN102 (Precursor) GN=SEN102 OS=Hemerocallis sp. (Daylily) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_32416 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011517",1.759995,7.85852,3.183156,10.16681,2.390837,12.16844,{"v":2.33077323781152e-05,"d":"2.33E-05"},1.95016527884359,"up","[R]","General function prediction only ","Cellular Component: nucleus (GO:0005634);; Cellular Component: signal recognition particle, endoplasmic reticulum targeting (GO:0005786);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to blue light (GO:0009637);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to sucrose (GO:0009744);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: response to far red light (GO:0010218);; Biological Process: cysteine biosynthetic process (GO:0019344);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: protein import into chloroplast thylakoid membrane (GO:0045038);; Biological Process: protein autophosphorylation (GO:0046777);; Cellular Component: signal recognition particle, chloroplast targeting (GO:0080085);; ","K12271|0|osa:4331514|Os03g0131900; K12271 signal recognition particle 43 kDa protein (A)","--","Probable signal recognition particle 43 kDa protein, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_09862 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009071",2.15547,4.83786,2.23386,6.70939,1.02757,10.4516,0.00999392982395993,1.94476081595092,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_08973 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017412",29.2819,122.256,52.6355,175.854,20.8782,140.151,{"v":7.35334276487648e-09,"d":"7.35E-09"},1.94352579508124,"up","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: plastid small ribosomal subunit (GO:0000312);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: chloroplast thylakoid (GO:0009534);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: rRNA binding (GO:0019843);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Biological Process: plastid translation (GO:0032544);; Biological Process: nuclear import (GO:0051170);; ","K02961|7.21642e-53|osa:4337506|Os04g0691600; K02961 small subunit ribosomal protein S17 (A)","Ribosome (ko03010)","30S ribosomal protein S17, chloroplastic (Precursor) GN=OSJNBb0020J19.5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Os04g0691600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA020148",12.9196,52.4348,14.187,68.9546,13.6038,37.5655,{"v":0.000747545939932723,"d":"7.48E-04"},1.94074740523053,"up","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_20555 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028894",46.0675,233.584,66.9689,308.027,52.2474,151.812,{"v":0.000366282892035036,"d":"3.66E-04"},1.93948041869928,"up","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleolus (GO:0005730);; Biological Process: nucleosome assembly (GO:0006334);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11252|7.23692e-59|sita:101761632|histone H2B.3-like; K11252 histone H2B (A)","--","Histone H2B.1 OS=Triticum aestivum (Wheat) PE=1 SV=3","B","Chromatin structure and dynamics","Histone H2B.2 [Triticum urartu]"]
["gene:BGIOSGA022045",2.3919935597,8.85248,3.758371,13.56185,2.65844497211,12.553855,{"v":5.99797831869354e-05,"d":"6.00E-05"},1.9389857020754,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Protein ASPARTIC PROTEASE IN GUARD CELL 2 (Precursor) GN=ASPG2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_21406 [Oryza sativa Indica Group]"]
["gene:BGIOSGA034602",0.958997,5.50895,1.50577,5.88386,1.4073,3.43383,0.00101085002358117,1.9376806349731,"up","--","--","Cellular Component: cytosol (GO:0005829);; ","--","--","--","S","Function unknown","hypothetical protein OsI_34900 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029472",9.976257,44.62987,13.044519,40.586628,9.41523000000004,49.59488,{"v":4.90047593504184e-08,"d":"4.90E-08"},1.93748944696775,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|9.22537e-13|osa:4347520|Os09g0507500; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 55 (Precursor) GN=MUA22.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","hypothetical protein OsI_31971 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010990",93.9117,467.93,132.912,734.667,131.056,307.556,0.00873676590041256,1.93680010634835,"up","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11251|1.49673e-49|gmx:100783903|histone H2A-like; K11251 histone H2A (A)","--","Probable histone H2A.5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","B","Chromatin structure and dynamics","PREDICTED: histone H2A-like [Glycine max] "]
["gene:BGIOSGA002411",2.548896884563,8.36494189915801,3.46750295045532,10.9580384608,1.57656556490163,9.74030164357,0.00325573237238878,1.93638241608073,"up","[S]","Function unknown ","Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Biological Process: photosynthesis (GO:0015979);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: positive regulation of catalytic activity (GO:0043085);; ","--","--","Thylakoid lumenal 15 kDa protein 1, chloroplastic (Precursor) GN=At2g44920 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","hypothetical protein OsI_00358 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017041",1.325888944,3.5295774670039,1.076551,5.502892,0.962452,3.31940522147,{"v":3.59892735825034e-05,"d":"3.60E-05"},1.9363635140556,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","hypothetical protein OsI_17233 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032931",1.61571,3.70559,1.82073,6.47704,1.16755,8.40996,0.0048682482916458,1.93128612413002,"up","[P]","Inorganic ion transport and metabolism ","Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);; Biological Process: sulfate transport (GO:0008272);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K17471|0|obr:102715054|sulfate transporter 3.1-like; K17471 sulfate transporter 3 (A)","--","Sulfate transporter 3.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_33612 [Oryza sativa Indica Group] "]
["gene:BGIOSGA003290",3.19613,12.4039,4.42701,16.6722,3.12201,12.1732,{"v":1.1026116036243e-06,"d":"1.10E-06"},1.92852656092792,"up","[H]","Coenzyme transport and metabolism ","Molecular Function: oxygen-dependent protoporphyrinogen oxidase activity (GO:0004729);; Biological Process: protoporphyrinogen IX biosynthetic process (GO:0006782);; Cellular Component: chloroplast thylakoid (GO:0009534);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00231|0|osa:4327918|Os01g0286600; K00231 oxygen-dependent protoporphyrinogen oxidase [EC:1.3.3.4] (A)","Porphyrin and chlorophyll metabolism (ko00860)","Protoporphyrinogen oxidase, chloroplastic (Precursor) GN=P0498A12.42 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","H","Coenzyme transport and metabolism","hypothetical protein OsI_01450 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014182",3.306972,14.303701,6.740334438,21.98975,4.17019,17.82835,{"v":2.66516948649401e-08,"d":"2.67E-08"},1.9263442678651,"up","[E]","Amino acid transport and metabolism ","Molecular Function: glutamate-ammonia ligase activity (GO:0004356);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glycolytic process (GO:0006096);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: glutamine biosynthetic process (GO:0006542);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: aging (GO:0007568);; Biological Process: nitrogen fixation (GO:0009399);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to blue light (GO:0009637);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to sucrose (GO:0009744);; Biological Process: response to glucose (GO:0009749);; Biological Process: response to fructose (GO:0009750);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: response to far red light (GO:0010218);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: ammonia assimilation cycle (GO:0019676);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; ","K01915|0|osa:4337272|Os04g0659100; K01915 glutamine synthetase [EC:6.3.1.2] (A)","Alanine, aspartate and glutamate metabolism (ko00250);; Arginine and proline metabolism (ko00330);; Glyoxylate and dicarboxylate metabolism (ko00630);; Nitrogen metabolism (ko00910);; Biosynthesis of amino acids (ko01230)","Glutamine synthetase, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","E","Amino acid transport and metabolism","Os04g0659100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA037113",2.36691,33.1853,10.299,37.8498,13.955,35.7594,{"v":0.00043008808598001,"d":"4.30E-04"},1.92503485401109,"up","--","--","Molecular Function: calmodulin binding (GO:0005516);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: cysteine biosynthetic process (GO:0019344);; Cellular Component: chloroplast photosystem I (GO:0030093);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; ","K02701|1.92281e-68|osa:4351694|Os12g0189400; K02701 photosystem I subunit PsaN (A)","Photosynthesis (ko00195)","Photosystem I reaction center subunit N, chloroplastic (Precursor) GN=PSAN OS=Hordeum vulgare (Barley) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_37722 [Oryza sativa Indica Group]"]
["gene:BGIOSGA034425",1.114628,6.13726,2.20843,8.45976,1.543564,4.02119,0.00267055073851083,1.92480226821274,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884);; ","--","--","Fatty acid amide hydrolase GN=FAAH OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_35272 [Oryza sativa Indica Group]"]
["gene:BGIOSGA007908",4.794598604,25.455114403,8.061608942,27.306491602,7.527134639,24.83871,{"v":3.66277911933455e-08,"d":"3.66E-08"},1.92368894363465,"up","[P]","Inorganic ion transport and metabolism ","Biological Process: MAPK cascade (GO:0000165);; Biological Process: rRNA processing (GO:0006364);; Biological Process: glycine catabolic process (GO:0006546);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: oxidoreduction coenzyme metabolic process (GO:0006733);; Biological Process: vitamin metabolic process (GO:0006766);; Biological Process: aromatic amino acid family metabolic process (GO:0009072);; Biological Process: lipoate metabolic process (GO:0009106);; Biological Process: coenzyme biosynthetic process (GO:0009108);; Biological Process: nucleotide metabolic process (GO:0009117);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to blue light (GO:0009637);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to sucrose (GO:0009744);; Biological Process: response to glucose (GO:0009749);; Biological Process: photosynthetic electron transport in photosystem II (GO:0009772);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: response to red light (GO:0010114);; Biological Process: response to chitin (GO:0010200);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: regulation of lipid metabolic process (GO:0019216);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: secondary metabolic process (GO:0019748);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: defense response to fungus (GO:0050832);; ","--","--","Rhodanese-like domain-containing protein 4, chloroplastic (Precursor) GN=F2N1.31 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","hypothetical protein OsI_06628 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011544",1.17184331078052,3.36446156732067,0.9994896968454,4.41375780954,1.59029473175007,5.6855990252949,0.00169552755876121,1.92318836469051,"up","--","--","Cellular Component: plastid (GO:0009536);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616);; Molecular Function: cofactor binding (GO:0048037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","S","Function unknown","hypothetical protein OsI_09810 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023367",12.63685,52.9285,22.53801,78.8814,16.29885,84.71028,{"v":4.43015839928056e-06,"d":"4.43E-06"},1.92187512618396,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast (GO:0009507);; ","K02916|1.26361e-70|osa:4341664|Os06g0647100; K02916 large subunit ribosomal protein L35 (A)","Ribosome (ko03010)","50S ribosomal protein L35, chloroplastic (Precursor) GN=RPL35 OS=Spinacia oleracea (Spinach) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","Os06g0647100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018673",37.75835838933,119.7811344173,58.4128050000782,176.603716926843,19.6049000021174,168.013571,{"v":9.64160482810259e-06,"d":"9.64E-06"},1.92137426741983,"up","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: plastid translation (GO:0032544);; ","--","--","30S ribosomal protein S31, chloroplastic (Precursor) GN=F16M14.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","Os05g0186000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002152",3.81671,14.8737,6.71239,23.3317,4.27741,21.1408,{"v":2.44078623664671e-07,"d":"2.44E-07"},1.91941939633257,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A heavy chain OS=Prunus dulcis (Almond) PE=1 SV=2","R","General function prediction only","Os01g0208400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021349",3.24773,14.0678,6.97206,14.1006,2.97868,24.655,0.00896945532836504,1.91601425715524,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","Os06g0316800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000896",7.11998,25.61607,10.586875,25.03416,3.734171,25.77902,{"v":4.68401092086312e-09,"d":"4.68E-09"},1.91487529415391,"up","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Molecular Function: xenobiotic-transporting ATPase activity (GO:0008559);; Cellular Component: plastid (GO:0009536);; Biological Process: auxin efflux (GO:0010315);; Molecular Function: auxin efflux transmembrane transporter activity (GO:0010329);; Biological Process: basipetal auxin transport (GO:0010540);; Biological Process: acropetal auxin transport (GO:0010541);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K05658|0|osa:4324720|Os01g0723800; K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] (A)","ABC transporters (ko02010)","Putative ABC transporter B family member 8 GN=MJI6.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=5 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_03576 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032397",105.7259,253.8161,106.3536,394.2225,84.4489,575.253,0.0071887022511055,1.9146988628161,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to salt stress (GO:0009651);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: response to zinc ion (GO:0010043);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of growth (GO:0045926);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|osa:4347962|Os10g0109300; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 15 {ECO:0000303|PubMed:17936696} (Precursor) OS=Ipomoea batatas (Sweet potato) PE=1 SV=1","G","Carbohydrate transport and metabolism","Os10g0109300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018373",1.101483,10.4696,1.861226,9.87011,4.931616,10.18814,{"v":3.15247038771571e-05,"d":"3.15E-05"},1.91041606431282,"up","--","--","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: plastid chromosome (GO:0009508);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to blue light (GO:0009637);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to red light (GO:0010114);; Biological Process: response to far red light (GO:0010218);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; ","--","--","Protein TIC 62, chloroplastic (Precursor) GN=TIC62 OS=Pisum sativum (Garden pea) PE=1 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein OsI_19308 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008501",4.11299,43.4391,12.6555,30.3036,11.2489,43.7339,{"v":0.00090847481536502,"d":"9.08E-04"},1.90691945079724,"up","--","--","--","--","--","Photosystem II 5 kDa protein, chloroplastic (Precursor) GN=PSBT OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","S","Function unknown","hypothetical protein OsI_07816 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021655",0.5069587811884,2.948352013715,1.212236472367,2.811321279,0.80320116222804,2.8503480495,{"v":0.000502639701409623,"d":"5.03E-04"},1.90593082738584,"up","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA replication initiation (GO:0006270);; Molecular Function: DNA-dependent ATPase activity (GO:0008094);; ","K10738|0|osa:4340503|Os06g0218500; K10738 DNA helicase MCM9 [EC:3.6.4.12] (A)","--","Probable DNA helicase MCM9 GN=MCM9 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","L","Replication, recombination and repair","RecName: Full=Probable DNA helicase MCM9; AltName: Full=Minichromosome maintenance 9 [Oryza sativa Indica Group] "]
["gene:BGIOSGA033360",5.03593,26.7294,8.15954,26.8996,4.80486,20.6043,{"v":1.00223778921192e-06,"d":"1.00E-06"},1.90454383882447,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|osa:4349241|Os10g0536700; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 5 {ECO:0000250|UniProtKB:P22195} (Precursor) OS=Vitis vinifera (Grape) PE=1 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein OsI_34475 [Oryza sativa Indica Group]"]
["gene:BGIOSGA040568",1.44684,4.59745,1.90173,5.75618,0.740615,5.83895,0.00248829467163418,1.90361818597545,"up","--","--","Biological Process: metabolic process (GO:0008152);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","--","Anthocyanidin 5,3-O-glucosyltransferase GN=RhGT1 OS=Rosa hybrid cultivar PE=2 SV=1","G","Carbohydrate transport and metabolism","Os07g0503900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA031205",4.40139,12.5864,3.13333,10.4453,2.01845,14.1099,0.00999392982395993,1.90187809388063,"up","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","--","--","Auxin-induced protein 6B OS=Glycine max (Soybean) PE=2 SV=1","S","Function unknown","Os09g0547100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA014484",39.6909,199.754,57.3945,302.8534,52.8646,148.2748,{"v":0.000216653258821644,"d":"2.17E-04"},1.89899582500525,"up","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: vacuole (GO:0005773);; Biological Process: nucleosome assembly (GO:0006334);; Cellular Component: thylakoid (GO:0009579);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K14838|8.9079e-51|zma:100282268|pco082380(357); LOC100282268; K11254 histone H4 (A)","--","Histone H4 OS=Glycine max (Soybean) PE=3 SV=1","B","Chromatin structure and dynamics","hypothetical protein ZEAMMB73_313798 [Zea mays]"]
["gene:BGIOSGA016409",0.917605881073522,4.944195,3.00453124700001,7.1533850616,3.045897,8.89624437518,0.00315658185163469,1.89720644510104,"up","--","--","Molecular Function: structural molecule activity (GO:0005198);; Cellular Component: chloroplast (GO:0009507);; ","--","--","Probable plastid-lipid-associated protein 7, chloroplastic (Precursor) GN=MYH9.3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_15884 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011535",5.27338,17.9035,5.75924,29.3174,4.29763,13.8851,0.00536861403562609,1.89649234903852,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","hypothetical protein OsI_09826 [Oryza sativa Indica Group]"]
["gene:BGIOSGA034470",18.3535,84.6422,26.7595,118.573,19.8598,55.0529,0.00167530533824814,1.89303845086781,"up","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; Biological Process: cell proliferation (GO:0008283);; Cellular Component: plastid (GO:0009536);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11253|3.26679e-78|zma:103636448|histone H3.2; K11253 histone H3 (A)","--","Histone H3.2 OS=Triticum aestivum (Wheat) PE=1 SV=2","B","Chromatin structure and dynamics","histone H3, expressed [Triticum aestivum] "]
["gene:BGIOSGA017780",1.17639,4.36298,2.48157,5.94232,1.11731,8.34296,0.00634627404988065,1.88914417813916,"up","--","--","Cellular Component: chloroplast (GO:0009507);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: cell differentiation (GO:0030154);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","S","Function unknown","Os05g0500400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011813",2.76898,13.6539,6.12882,11.901,1.30186,13.6962,{"v":9.14327380097038e-06,"d":"9.14E-06"},1.88891390059528,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Alkane hydroxylase MAH1 {ECO:0000303|PubMed:17905869} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_09931 [Oryza sativa Indica Group]"]
["gene:BGIOSGA024256",4.62219,12.924,4.45962,18.0404,2.71019,16.1036,{"v":7.19232604655014e-06,"d":"7.19E-06"},1.8872607973252,"up","--","--","Biological Process: metabolic process (GO:0008152);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","--","Anthocyanidin 5,3-O-glucosyltransferase GN=RhGT1 OS=Rosa hybrid cultivar PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_26123 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027626",22.05584,107.6543,34.5614,153.1137,42.726,138.0527,{"v":8.05171421948992e-09,"d":"8.05E-09"},1.88372488172857,"up","[QR]","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to salicylic acid (GO:0009751);; Biological Process: lignin biosynthetic process (GO:0009809);; Molecular Function: luteolin O-methyltransferase activity (GO:0030744);; Biological Process: methylation (GO:0032259);; Molecular Function: myricetin 3'-O-methyltransferase activity (GO:0033799);; Biological Process: response to hydrogen peroxide (GO:0042542);; Molecular Function: protein dimerization activity (GO:0046983);; Molecular Function: caffeate O-methyltransferase activity (GO:0047763);; Biological Process: flavonol biosynthetic process (GO:0051555);; ","K05279|0|osa:4344702|Os08g0157500; K05279 flavonol 3-O-methyltransferase [EC:2.1.1.76] (A)","Flavone and flavonol biosynthesis (ko00944)","Flavone 3&apos;-O-methyltransferase 1 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_27880 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016601",2.041085,8.77185,2.92778,10.98186,2.826189,6.61651,0.00222823069921575,1.88334876903571,"up","--","--","Cellular Component: nucleus (GO:0005634);; ","K10744|0|obr:102706937|uncharacterized LOC102706937; K10744 ribonuclease H2 subunit B (A)","DNA replication (ko03030)","--","S","Function unknown","OSIGBa0106G07.13 [Oryza sativa Indica Group] "]
["gene:BGIOSGA010856",8.47611,30.6852,14.5675,41.0057,8.53325,42.6128,{"v":5.7368945338169e-08,"d":"5.74E-08"},1.88307939496115,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Cellular Component: membrane (GO:0016020);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; ","K02945|0|osa:4332652|Os03g0315800; K02945 small subunit ribosomal protein S1 (A)","Ribosome (ko03010)","30S ribosomal protein S1, chloroplastic (Precursor) GN=RPS1 OS=Spinacia oleracea (Spinach) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","30S ribosomal protein S1, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012498",2.299872,5.19091,1.399975,7.0718,1.836651,8.87382,{"v":2.32478575687544e-05,"d":"2.32E-05"},1.87899223250031,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","--","--","--","S","Function unknown","hypothetical protein OsI_11300 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009752",12.26968,55.59,25.79097,84.8491,16.97835,72.1415,{"v":3.34397258930153e-07,"d":"3.34E-07"},1.87815938097596,"up","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: plastid small ribosomal subunit (GO:0000312);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02996|4.35919e-107|osa:4334247|Os03g0769100; K02996 small subunit ribosomal protein S9 (A)","Ribosome (ko03010)","30S ribosomal protein S9, chloroplastic (Precursor) GN=RPS9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_13671 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025595",39.09649,228.59151,86.55383,213.58565,44.5107200000002,229.772088,{"v":9.4605635958111e-09,"d":"9.46E-09"},1.87681842967295,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: photosystem I reaction center (GO:0009538);; Cellular Component: plastoglobule (GO:0010287);; Biological Process: photosynthesis (GO:0015979);; ","K02693|3.40308e-42|bdi:100824270|photosystem I reaction center subunit IV, chloroplastic-like; K02693 photosystem I subunit IV (A)","Photosynthesis (ko00195)","Photosystem I reaction center subunit IV, chloroplastic (Precursor) GN=PSAE OS=Hordeum vulgare (Barley) PE=1 SV=2","R","General function prediction only","putative Photosystem I reaction center subunit IV [Oryza sativa Japonica Group] "]
["gene:BGIOSGA040478",2.736976894351,6.76764087996529,1.86627723967,6.488440919643,0.746554121000019,7.08366101343069,0.00459905980769287,1.87528412281975,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","Os10g0411100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA008967",0.3878112558,1.386466,0.38256335981,1.629428,0.4584300002,1.603216784,0.00521695613354168,1.87260136443982,"up","--","--","Cellular Component: ubiquitin ligase complex (GO:0000151);; Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","Putative U-box domain-containing protein 42 GN=PUB42 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_08777 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012359",1.72379,5.87155,2.15204,6.84389,1.28497,7.40389,{"v":9.15845241663004e-05,"d":"9.16E-05"},1.86642064241217,"up","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuolar lumen (GO:0005775);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: vacuolar transport (GO:0007034);; Biological Process: response to nematode (GO:0009624);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","--","ABC transporter G family member 5 {ECO:0000305} OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","RecName: Full=ABC transporter G family member 5; Short=ABC transporter ABCG.5; Short=OsABCG5; AltName: Full=White-brown complex homolog protein 5; Short=OsWBC5 [Oryza sativa Indica Group] "]
["gene:BGIOSGA017056",1.784635,9.3826,3.69854,10.51772,3.51684,10.61264,{"v":8.47516324126793e-05,"d":"8.48E-05"},1.86207062573585,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: nucleus (GO:0005634);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Biological Process: response to blue light (GO:0009637);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to red light (GO:0010114);; Biological Process: response to far red light (GO:0010218);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: glucosinolate metabolic process (GO:0019760);; Molecular Function: heme binding (GO:0020037);; ","K00434|0|osa:4336886|Os04g0602100; K00434 L-ascorbate peroxidase [EC:1.11.1.11] (A)","Ascorbate and aldarate metabolism (ko00053);; Glutathione metabolism (ko00480)","Thylakoid lumenal 29 kDa protein, chloroplastic (Precursor) GN=CLEB3J9 OS=Solanum lycopersicum (Tomato) PE=3 SV=1","R","General function prediction only","Os04g0602100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023953",10.9825,50.5224,26.017,73.1078,14.3844,69.0697,{"v":0.000590961179239906,"d":"5.91E-04"},1.86042096088908,"up","--","--","--","--","--","--","--","--","--"]
["gene:BGIOSGA037230",15.01423,52.3963,24.6826,66.2355,13.26356,67.5059,{"v":1.57003908894249e-08,"d":"1.57E-08"},1.85267689588622,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: embryo development (GO:0009790);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: protein refolding (GO:0042026);; Cellular Component: apoplast (GO:0048046);; ","--","--","RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Precursor; Fragment) OS=Triticum aestivum (Wheat) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os12g0277500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004976",0.8381845,5.12312,1.1492846,3.60325,0.869113014,2.188575,0.0031153050810444,1.85200976419,"up","--","--","Biological Process: mitotic cell cycle (GO:0000278);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA replication initiation (GO:0006270);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: DNA methylation (GO:0006306);; Biological Process: nucleosome assembly (GO:0006334);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cell proliferation (GO:0008283);; Biological Process: pollen development (GO:0009555);; Biological Process: regulation of meristem structural organization (GO:0009934);; Biological Process: trichome differentiation (GO:0010026);; Biological Process: vegetative meristem growth (GO:0010448);; Biological Process: root meristem growth (GO:0010449);; Biological Process: somatic cell DNA recombination (GO:0016444);; Biological Process: gene silencing by RNA (GO:0031047);; Biological Process: heterochromatin assembly (GO:0031507);; Cellular Component: CAF-1 complex (GO:0033186);; Molecular Function: histone binding (GO:0042393);; Biological Process: positive regulation of cell cycle (GO:0045787);; Biological Process: leaf development (GO:0048366);; ","K10750|0|dosa:Os01t0896300-00|Os01g0896300; Hypothetical conserved gene.; K10750 chromatin assembly factor 1 subunit A (A)","--","Chromatin assembly factor 1 subunit FSM OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","B","Chromatin structure and dynamics","hypothetical protein OsI_04775 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013880",1.46284,4.60822,1.53354,8.01201,2.14608,7.61583,0.00645836494738529,1.85185458748518,"up","[IQR]","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Short-chain dehydrogenase reductase 3b GN=F14M4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","Os03g0833100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004974",3.9965546111,21.3431385045,7.2829542555,21.05843,5.526618321,24.957962,{"v":5.52815162540432e-08,"d":"5.53E-08"},1.85115210073898,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","--","--","hypothetical protein OsI_04773 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027757",12.6307,56.4407,18.5437,55.4697,11.7067,56.6129,{"v":1.62060034365092e-08,"d":"1.62E-08"},1.85031476268621,"up","--","--","Molecular Function: D-arabinono-1,4-lactone oxidase activity (GO:0003885);; Cellular Component: cell wall (GO:0005618);; Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","V","Defense mechanisms","hypothetical protein OsI_27592 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020410",50.79,230.076,67.6271,334.557,60.0481,154.241,0.00260760987389197,1.84998744771258,"up","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleolus (GO:0005730);; Biological Process: nucleosome assembly (GO:0006334);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11252|2.42695e-49|osa:4324512|Os01g0149600; K11252 histone H2B (A)","--","Histone H2B.4 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","B","Chromatin structure and dynamics","unnamed protein product [Triticum aestivum]"]
["gene:BGIOSGA017968",7.1322,30.1721,8.94572,28.8313,5.12321,20.7104,0.0013192452747891,1.84962866354194,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; ","--","--","Transcription repressor OFP13 GN=OFP13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_20121 [Oryza sativa Indica Group]"]
["gene:BGIOSGA034680",10.7652000015144,53.2403000011958,27.91954,74.9770000002223,17.955300000731,91.4479000016571,{"v":2.98289992258847e-05,"d":"2.98E-05"},1.84258910282076,"up","--","--","Biological Process: lipid transport (GO:0006869);; Biological Process: defense response (GO:0006952);; Molecular Function: lipid binding (GO:0008289);; ","--","--","Non-specific lipid-transfer protein 3 (Precursor) GN=LTP110-B OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","Os11g0115100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA034967",3.83113000218026,24.6413207005407,10.8112560001793,13.1761,2.88843100000265,21.754923,0.00306856145807492,1.8424525659051,"up","[I]","Lipid transport and metabolism ","Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: intramolecular transferase activity (GO:0016866);; ","K01853|0|dosa:Os11t0189600-01|Os11g0189600; Similar to Cycloartenol synthase.; K19010 parkeol synthase [EC:5.4.99.47] (A)","Steroid biosynthesis (ko00100)","Parkeol synthase OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","I","Lipid transport and metabolism","RecName: Full=Parkeol synthase [Oryza sativa Japonica Group] "]
["gene:BGIOSGA025136",0.40148203758,3.47147141793,1.14608103451,2.32966239103,0.85158985509,2.73236164486,0.00863672769291982,1.84213265874359,"up","[C]","Energy production and conversion ","Molecular Function: alditol:NADP+ 1-oxidoreductase activity (GO:0004032);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Uncharacterized oxidoreductase At1g06690, chloroplastic (Precursor) GN=At1g06690 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","C","Energy production and conversion","hypothetical protein OsI_24866 [Oryza sativa Indica Group] "]
["gene:BGIOSGA013263",2.43828,10.4003,4.65689,12.7601,2.44062,12.665,0.00413365521130429,1.834457345004,"up","--","--","Biological Process: proteolysis (GO:0006508);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","hypothetical protein [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013550",1.73199,7.04156,1.97282,9.14933,1.76315,5.14391,0.00200081933241062,1.83139627765974,"up","--","--","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Molecular Function: C-8 sterol isomerase activity (GO:0000247);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: DNA replication initiation (GO:0006270);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: DNA methylation (GO:0006306);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: ergosterol biosynthetic process (GO:0006696);; Biological Process: cell proliferation (GO:0008283);; Cellular Component: plastid (GO:0009536);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: regulation of G2/M transition of mitotic cell cycle (GO:0010389);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: histone H3-K9 methylation (GO:0051567);; ","--","--","--","S","Function unknown","hypothetical protein OsI_13491 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011555",107.26723,273.9654,120.36566,366.2435,76.82114,421.6446,{"v":5.38735211370056e-06,"d":"5.39E-06"},1.82974287651381,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytosolic ribosome (GO:0022626);; ","K02867|2.70981e-95|dosa:Os03t0122200-01|Os03g0122200; Similar to 50S ribosomal protein L11.; K02867 large subunit ribosomal protein L11 (A)","Ribosome (ko03010)","50S ribosomal protein L11, chloroplastic (Precursor) GN=RPL11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_09782 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003401",3.5657,16.3277,6.52201,16.2536,6.45508,29.5699,0.0080978973069238,1.82858070872457,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Peroxidase 1 (Precursor) GN=PER1 OS=Zea mays (Maize) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_01679 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017815",8.09284,39.7059,14.3631,33.4347,9.60522,54.3965,{"v":3.29803871934752e-05,"d":"3.30E-05"},1.82099364870405,"up","--","--","Biological Process: maltose metabolic process (GO:0000023);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: positive regulation of catalytic activity (GO:0043085);; ","--","--","--","S","Function unknown","Os05g0490900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026646",1.20316,8.15144,2.309883,8.97271,3.0946,7.87567,0.00299580210348302,1.82092798532316,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","Os08g0521800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA024794",1.07046,7.59192,3.32382,9.04173,2.91139,11.5986,{"v":0.0005822866280433,"d":"5.82E-04"},1.82085689258518,"up","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: ovule development (GO:0048481);; ","--","--","RNA-binding protein CP33, chloroplastic {ECO:0000305} (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","A","RNA processing and modification","Os07g0158300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA037739",2.19213224088,12.68430190121,3.6328378519,9.026797,2.46260134415,6.06484148174,0.00316189741283119,1.81951710706892,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; Biological Process: pollen development (GO:0009555);; Biological Process: embryo development (GO:0009790);; Biological Process: seed development (GO:0048316);; Biological Process: generative cell mitosis (GO:0055047);; ","--","--","F-box/LRR-repeat protein 17 GN=FBL17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_38999 [Oryza sativa Indica Group]"]
["gene:BGIOSGA037847",6.46542,18.7338,9.75822,31.4496,5.37559,30.5147,{"v":0.000521536917262237,"d":"5.22E-04"},1.81945896357924,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","Os12g0630600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013779",2.0725618987,15.40588,6.823283565,13.539618368,5.28294,15.375075,0.0076525569389198,1.81723242347229,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","Os03g0806800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA022844",1.521637,4.80212,1.415952,3.341674,1.002436,4.071713,0.00275046498344957,1.81711337965439,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Molecular Function: primary amine oxidase activity (GO:0008131);; Biological Process: amine metabolic process (GO:0009308);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: quinone binding (GO:0048038);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00276|0|osa:4340945|Os06g0338200; K00276 primary-amine oxidase [EC:1.4.3.21] (A)","Glycine, serine and threonine metabolism (ko00260);; Tyrosine metabolism (ko00350);; Phenylalanine metabolism (ko00360);; beta-Alanine metabolism (ko00410);; Isoquinoline alkaloid biosynthesis (ko00950);; Tropane, piperidine and pyridine alkaloid biosynthesis (ko00960)","Primary amine oxidase (Precursor; Fragment) OS=Lens culinaris (Lentil) PE=1 SV=3","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_22833 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009075",22.652658,76.29428,44.06396,130.558157,19.582732,117.712378,{"v":2.09151438879235e-05,"d":"2.09E-05"},1.81276074369329,"up","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: DNA-templated transcription, elongation (GO:0006354);; Biological Process: translation (GO:0006412);; Cellular Component: nucleoid (GO:0009295);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: ribosome biogenesis (GO:0042254);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K02904|1.87571e-71|osa:4330763|Os02g0754300; K02904 large subunit ribosomal protein L29 (A)","Ribosome (ko03010)","50S ribosomal protein L29, chloroplastic (Precursor) GN=RPL29 OS=Zea mays (Maize) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_08980 [Oryza sativa Indica Group]"]
["gene:BGIOSGA038478",1.43224,10.0065,4.44995,17.1201,5.41446,14.9978,0.00108969769436204,1.80983000951721,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsJ_23952 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA004349",1.37713816705034,6.1180252416183,1.80786439455383,5.920081432641,2.279623751121,6.26597490040025,{"v":0.000428143918082354,"d":"4.28E-04"},1.80943881960185,"up","[D]","Cell cycle control, cell division, chromosome partitioning ","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: ATP binding (GO:0005524);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosynthesis (GO:0015979);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: positive regulation of catalytic activity (GO:0043085);; ","--","--","Fe-S cluster assembly factor HCF101, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=3","D","Cell cycle control, cell division, chromosome partitioning","Os01g0719700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029203",1.95918,12.1026,4.78995,9.91832,3.35368,12.062,{"v":0.000153515041345207,"d":"1.54E-04"},1.80812004734361,"up","[C]","Energy production and conversion ","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Biological Process: malate metabolic process (GO:0006108);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: plastid organization (GO:0009657);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: L-malate dehydrogenase activity (GO:0030060);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Molecular Function: malate dehydrogenase (NADP+) activity (GO:0046554);; Cellular Component: apoplast (GO:0048046);; ","K00051|0|osa:4346332|Os08g0562100; K00051 malate dehydrogenase (NADP+) [EC:1.1.1.82] (A)","Pyruvate metabolism (ko00620);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Malate dehydrogenase [NADP], chloroplastic (Precursor) OS=Zea mays (Maize) PE=1 SV=1","C","Energy production and conversion","hypothetical protein OsI_30287 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013327",10.960151,66.0329208,38.609736761,55.4977719,2.539581502,51.5591513,0.00128769903914099,1.80702688372432,"up","[H]","Coenzyme transport and metabolism ","Biological Process: maltose metabolic process (GO:0000023);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: thiamine biosynthetic process (GO:0009228);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to vitamin B1 (GO:0010266);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: glucosinolate metabolic process (GO:0019760);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; Molecular Function: ADP-ribose pyrophosphohydrolase activity (GO:0080041);; ","K03147|0|osa:4333719|Os03g0679700; K03147 phosphomethylpyrimidine synthase [EC:4.1.99.17] (A)","Thiamine metabolism (ko00730)","Phosphomethylpyrimidine synthase, chloroplastic (Precursor) GN=T27A16.27 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","H","Coenzyme transport and metabolism","hypothetical protein OsI_13021 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027483",28.96012,212.06,72.0538,181.6556,52.6147,163.6276,{"v":1.12754550734313e-07,"d":"1.13E-07"},1.80461567277171,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to blue light (GO:0009637);; Biological Process: response to high light intensity (GO:0009644);; Cellular Component: photosystem II oxygen evolving complex (GO:0009654);; Biological Process: response to sucrose (GO:0009744);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: response to far red light (GO:0010218);; Biological Process: photosynthesis (GO:0015979);; Biological Process: cysteine biosynthetic process (GO:0019344);; ","K03541|1.01899e-76|osa:4344899|Os08g0200300; K03541 photosystem II 10kDa protein (A)","Photosynthesis (ko00195)","Photosystem II 10 kDa polypeptide, chloroplastic (Precursor) GN=PSBR OS=Spinacia oleracea (Spinach) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_28175 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018663",20.5152,59.9778,39.4592,108.036,12.8607,96.7207,{"v":0.000883457807571533,"d":"8.83E-04"},1.80321320546405,"up","--","--","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Acid phosphatase 1 (Precursor) GN=APS1 OS=Solanum lycopersicum (Tomato) PE=2 SV=1","--","--","hypothetical protein OsI_18758 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032615",1.30774397116,4.3219494211,1.352621538185,4.425542194964,0.896641076700016,4.122172334319,0.00964270331519415,1.7978376444632,"up","--","--","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: chloroplast organization (GO:0009658);; Cellular Component: chloroplast nucleoid (GO:0042644);; ","--","--","--","S","Function unknown","hypothetical protein OsI_32898 [Oryza sativa Indica Group] "]
["gene:BGIOSGA010720",7.45886,29.9585,15.64814,36.5734,8.01189,38.7588,{"v":7.53217291044172e-06,"d":"7.53E-06"},1.7975122439231,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: DNA-templated transcription, elongation (GO:0006354);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: plastid organization (GO:0009657);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photosystem II assembly (GO:0010207);; Cellular Component: large ribosomal subunit (GO:0015934);; Cellular Component: membrane (GO:0016020);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Molecular Function: rRNA binding (GO:0019843);; ","K02933|9.02113e-156|osa:4332868|Os03g0356300; K02933 large subunit ribosomal protein L6 (A)","Ribosome (ko03010)","50S ribosomal protein L6, chloroplastic (Precursor) GN=YUP8H12.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Os03g0356300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA008870",2.643,11.2371,3.89959,14.0006,2.90515,7.46708,{"v":0.000325519433399003,"d":"3.26E-04"},1.79722990582335,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","hypothetical protein OsI_08581 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009722",17.6173,121.131,57.3716,127.076,25.6741,116.728,{"v":8.82489400352587e-08,"d":"8.82E-08"},1.79626428455183,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: photosystem I reaction center (GO:0009538);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Biological Process: photosynthesis (GO:0015979);; Biological Process: cysteine biosynthetic process (GO:0019344);; ","K02694|1.8864e-99|dosa:Os03t0778100-01|Os03g0778100, PSAF, PHOTOSYSTEM_I_SUBUNIT; Similar to Photosystem-1 F subunit.; K02694 photosystem I subunit III (A)","Photosynthesis (ko00195)","Photosystem I reaction center subunit III, chloroplastic (Precursor) GN=PSAF OS=Hordeum vulgare (Barley) PE=1 SV=2","G","Carbohydrate transport and metabolism","photosystem-1 F subunit precursor [Oryza sativa Japonica Group]"]
["gene:BGIOSGA024436",1.645196,10.46588,3.24961,10.47363,2.5269,5.39122,0.00125761468366619,1.79605140922419,"up","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: signal transduction (GO:0007165);; ","--","--","Rho GTPase-activating protein 2 GN=ROPGAP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_25716 [Oryza sativa Indica Group]"]
["gene:BGIOSGA037659",3.81178,10.6752,3.60916,11.1218,2.3979,16.9674,{"v":0.000541883470678135,"d":"5.42E-04"},1.79528838291347,"up","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","S","Function unknown","hypothetical protein OsI_38858 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028585",4.21897207425,9.97211270154313,4.9582895839,12.974186,2.557118038,14.02256488952,{"v":4.42766261584804e-05,"d":"4.43E-05"},1.79267646913288,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: MAPK cascade (GO:0000165);; Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: protein folding (GO:0006457);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to chitin (GO:0010200);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: defense response to fungus (GO:0050832);; ","--","--","Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic (Precursor) GN=CYP38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_29072 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022054",3.83201,13.5389,5.65536,15.0693,3.18621,18.3626,{"v":0.000334921536573574,"d":"3.35E-04"},1.78744085700979,"up","--","--","Biological Process: cobalt ion transport (GO:0006824);; Molecular Function: cobalt ion transmembrane transporter activity (GO:0015087);; Molecular Function: nickel cation transmembrane transporter activity (GO:0015099);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: nickel cation transmembrane transport (GO:0035444);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","S","Function unknown","Os06g0116400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA009747",2.1914630686,7.8416576692,2.9359771101,9.3670561574,1.635153973,5.870483122,{"v":8.0888859689625e-05,"d":"8.09E-05"},1.78609129707577,"up","--","--","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; ","--","--","--","S","Function unknown","hypothetical protein OsI_13683 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027798",33.7096,240.6272,88.874,264.5321,81.2492,240.3624,{"v":4.99231978517651e-08,"d":"4.99E-08"},1.78561204659332,"up","[C]","Energy production and conversion ","Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: photosynthetic electron transport chain (GO:0009767);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; Biological Process: response to karrikin (GO:0080167);; ","K02639|1.40477e-59|osa:4344439|Os08g0104600; K02639 ferredoxin (A)","Photosynthesis (ko00195)","Ferredoxin-1, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","C","Energy production and conversion","hypothetical protein OsI_27506 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029102",1.47382600086712,4.522443,1.4811499,3.90932,0.76017887,4.338362,0.00547625399025891,1.78307809821784,"up","--","--","Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","Shikimate O-hydroxycinnamoyltransferase GN=K19E20.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_30111 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009659",5.32291,27.3006,12.70658,32.641,5.92287,24.462,{"v":0.000103441145631025,"d":"1.03E-04"},1.7825441941738,"up","--","--","Biological Process: proteolysis (GO:0006508);; Biological Process: lipid transport (GO:0006869);; Molecular Function: peptidase activity (GO:0008233);; Molecular Function: lipid binding (GO:0008289);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Non-specific lipid transfer protein GPI-anchored 2 (Precursor) GN=T28A8.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Os03g0793800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA001845",6.75358,33.0514,15.8389,43.8126,8.83046,38.0136,{"v":1.31429393254065e-06,"d":"1.31E-06"},1.7816174899735,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Peroxidase 2 (Precursor) GN=PER2 OS=Zea mays (Maize) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_01501 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010578",3.20931,6.85493,1.30929,6.90439,0.854303,6.24735,0.00770646922570193,1.78135326795276,"up","--","--","--","--","--","F-box only protein 13 GN=FBX13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","hypothetical protein OsI_11936 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031963",1.16341909884,3.42085873456,1.00708096051768,2.80766707333613,0.71467759111,1.5670621497,0.00501893627869273,1.780105249347,"up","--","--","--","K02605|1.63813e-140|osa:4348571|Os10g0402200; K02605 origin recognition complex subunit 3 (A)","--","Origin of replication complex subunit 3 {ECO:0000303|PubMed:15939553} OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein OsI_33492 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012134",11.53645,46.9438,24.94842,61.4616,13.02508,62.6592,{"v":1.57074469648749e-07,"d":"1.57E-07"},1.77921690772673,"up","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: plastid large ribosomal subunit (GO:0000311);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: DNA-templated transcription, elongation (GO:0006354);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; ","K02876|1.01528e-132|osa:4332089|Os03g0219900; K02876 large subunit ribosomal protein L15 (A)","Ribosome (ko03010)","50S ribosomal protein L15, chloroplastic (Precursor; Fragment) GN=RPL15 OS=Pisum sativum (Garden pea) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Os03g0219900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA010642",6.23016,20.381,8.65527,27.6208,5.70662,23.855,{"v":9.52491261638953e-05,"d":"9.52E-05"},1.77757737053597,"up","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: poly(U) RNA binding (GO:0008266);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to abscisic acid (GO:0009737);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Cellular Component: ribonucleoprotein complex (GO:0030529);; Biological Process: innate immune response (GO:0045087);; ","--","--","RNA-binding protein CP29B, chloroplastic {ECO:0000305} (Precursor) GN=F3G5.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","hypothetical protein OsI_11785 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032287",37.9501,106.132,51.3358,176.165,34.2303,167.037,{"v":5.04927258962158e-06,"d":"5.05E-06"},1.77569181718685,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Proline-rich protein 2 (Precursor) GN=PRP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_32749 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013346",3.10647932014,15.876209,8.100905013,15.184018,3.392537,18.616203,{"v":0.000283788094667311,"d":"2.84E-04"},1.77316375506132,"up","[C]","Energy production and conversion ","Biological Process: pentose-phosphate shunt (GO:0006098);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast (GO:0009507);; Biological Process: abscisic acid biosynthetic process (GO:0009688);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; ","K02639|8.33465e-95|osa:4333746|Os03g0685000; K02639 ferredoxin (A)","Photosynthesis (ko00195)","Ferredoxin GN=petF OS=Cyanidium caldarium PE=3 SV=3","S","Function unknown","hypothetical protein OsI_13059 [Oryza sativa Indica Group] "]
["gene:BGIOSGA032539",7.50531,17.3223,8.35992,26.5998,3.56594,26.6253,{"v":0.00085944446754614,"d":"8.59E-04"},1.77265350915697,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_32760 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006746",12.5301,55.61683,18.94465,61.94105,11.1366,35.79581,{"v":4.42766261584804e-05,"d":"4.43E-05"},1.77117590508647,"up","--","--","--","K09273|2.80812e-121|obr:102703098|high mobility group B protein 6-like; K09273 upstream-binding transcription factor (A)","--","High mobility group B protein 6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","putative embryogenic callus protein 98b [Oryza sativa Japonica Group] "]
["gene:BGIOSGA025778",1.032815,4.02306815177679,2.056501646,4.57134794201108,0.870238865070042,4.3172581651,0.00253826674654574,1.7701440898887,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: aminopeptidase activity (GO:0004177);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: proteolysis (GO:0006508);; Molecular Function: metalloexopeptidase activity (GO:0008235);; Cellular Component: plastid (GO:0009536);; Biological Process: cellular process (GO:0009987);; Molecular Function: metal ion binding (GO:0046872);; ","K01265|0|osa:4343349|Os07g0510100; K01265 methionyl aminopeptidase [EC:3.4.11.18] (A)","--","Methionine aminopeptidase 1B, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03174} (Precursor) GN=MAP1B OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_26154 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012977",1.35423,4.49401,2.49381,6.32884,1.37323,5.5338,0.00944579048328418,1.76875305901005,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein OsI_12267 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017166",5.9516647602,20.135330518,7.6580102508,25.986992974,5.9066462061,21.57213211,{"v":8.75168067785838e-07,"d":"8.75E-07"},1.7670274335444,"up","[E]","Amino acid transport and metabolism ","Molecular Function: aminomethyltransferase activity (GO:0004047);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glycine catabolic process (GO:0006546);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Molecular Function: transaminase activity (GO:0008483);; Cellular Component: chloroplast thylakoid (GO:0009534);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: auxin polar transport (GO:0009926);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: regulation of meristem growth (GO:0010075);; Cellular Component: membrane (GO:0016020);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: cysteine biosynthetic process (GO:0019344);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: methylation (GO:0032259);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: ovule development (GO:0048481);; ","K00605|3.77195e-180|osa:4337051|Os04g0623800; K00605 aminomethyltransferase [EC:2.1.2.10] (A)","Glycine, serine and threonine metabolism (ko00260);; One carbon pool by folate (ko00670);; Carbon metabolism (ko01200)","Aminomethyltransferase, mitochondrial (Precursor) GN=GDCST OS=Solanum tuberosum (Potato) PE=1 SV=1","E","Amino acid transport and metabolism","hypothetical protein OsI_17482 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019027",12.339,31.5953,14.2557,60.1279,10.7411,45.2231,{"v":0.000129660801202347,"d":"1.30E-04"},1.76684373062475,"up","--","--","Cellular Component: plant-type vacuole (GO:0000325);; Molecular Function: cysteine-type endopeptidase activity (GO:0004197);; Molecular Function: transporter activity (GO:0005215);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Biological Process: proteolysis (GO:0006508);; Biological Process: transport (GO:0006810);; Biological Process: developmental programmed cell death (GO:0010623);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K16290|0|osa:4337582|Os05g0108600; K16290 xylem cysteine proteinase [EC:3.4.22.-] (A)","--","Xylem cysteine proteinase 2 (Precursor) GN=XCP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","Os05g0108600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021464",1.82329,6.63905,2.85361,7.66678,2.23323,8.90538,0.00454975897177769,1.76640144147491,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|osa:4340745|Os06g0274800; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 11 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","Os06g0274800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029286",3.06197,8.53506,3.41056,14.2309,2.03139,7.02048,0.0080978973069238,1.76426761300721,"up","--","--","Cellular Component: membrane (GO:0016020);; Biological Process: single-organism transport (GO:0044765);; ","--","--","--","S","Function unknown","hypothetical protein OsI_32353 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025908",0.6865782052,3.1039723738,1.3123731926,2.892252,0.4635646186,2.577696,0.00660814181754141,1.76373456578933,"up","--","--","Cellular Component: chloroplast (GO:0009507);; ","--","--","Pentatricopeptide repeat-containing protein At5g42310, mitochondrial (Precursor) GN=At5g42310 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_26403 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027711",0.62602025726,2.416987,0.783511975,2.774093,0.68584308396,1.418818,0.00490292727487473,1.76247191814329,"up","--","--","--","--","--","Protein CHUP1, chloroplastic GN=CHUP1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_27693 [Oryza sativa Indica Group]"]
["gene:BGIOSGA035125",0.584178,2.639180655,1.383538,3.52294,0.693777,2.9167,0.00826838179364003,1.76195726954099,"up","--","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: transport (GO:0006810);; Cellular Component: membrane (GO:0016020);; ","K14638|0|dosa:Os11t0282800-00|Os11g0282800; Similar to POT family protein, expressed.; K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 (A)","--","Protein NRT1/ PTR FAMILY 8.2 GN=F7J8.160 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein OsI_35809 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031494",6.92415,38.6543,16.61612,37.5092,9.36031,39.5881,{"v":1.75771622197993e-07,"d":"1.76E-07"},1.76118754418158,"up","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3","K","Transcription","hypothetical protein OsI_34463 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010427",6.89364,28.62453,18.07662,41.33529,8.86867,33.38833,{"v":1.51819748639325e-06,"d":"1.52E-06"},1.76089803086744,"up","[H]","Coenzyme transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Biological Process: ATP catabolic process (GO:0006200);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: photosynthesis (GO:0015979);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Molecular Function: magnesium chelatase activity (GO:0016851);; Molecular Function: ATPase activity (GO:0016887);; ","K03405|0|osa:4333259|Os03g0563300; K03405 magnesium chelatase subunit I [EC:6.6.1.1] (A)","Porphyrin and chlorophyll metabolism (ko00860)","Magnesium-chelatase subunit ChlI, chloroplastic (Precursor) GN=CHLI OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","H","Coenzyme transport and metabolism","RecName: Full=Magnesium-chelatase subunit ChlI, chloroplastic; Short=Mg-chelatase subunit I; AltName: Full=Mg-protoporphyrin IX chelatase subunit ChlI; AltName: Full=Protein CHLORINA 9; Flags: Precursor [Oryza sativa Indica Group] "]
["gene:BGIOSGA004724",1.753271,7.722086,2.57855600884,9.68082798487,2.239559,6.172974,{"v":0.000490840098655363,"d":"4.91E-04"},1.7582919345918,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: lignin catabolic process (GO:0046274);; Biological Process: response to copper ion (GO:0046688);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Laccase-3 (Precursor) GN=B1088C09.5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_04280 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017459",4.48014,12.3042,5.23894,18.3711,2.58283,14.5421,{"v":0.000100559723620636,"d":"1.01E-04"},1.75365940436057,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: response to karrikin (GO:0080167);; ","--","--","Protein ASPARTIC PROTEASE IN GUARD CELL 1 (Precursor) GN=ASPG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_21202 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026257",0.6496576935,3.35520103061,0.7556552192835,2.52221494993,0.879559022165938,2.201656,0.0056403012518336,1.75229453927438,"up","--","--","Molecular Function: catalytic activity (GO:0003824);; Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; Biological Process: cellular metabolic process (GO:0044237);; ","--","--","--","--","--","hypothetical protein OsI_27092 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026486",0.978647,6.49259,2.708457,5.36227,2.625124,4.49081,0.00380343918155503,1.75136879284297,"up","--","--","--","--","--","--","S","Function unknown","Os08g0560300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018986",8.18718637726429,20.7271672643,9.0711804370659,33.560373628394,7.831924736,31.1358310573,{"v":1.60803525978612e-05,"d":"1.61E-05"},1.74911935280368,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Biological Process: methylglyoxal catabolic process to D-lactate (GO:0019243);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; ","K02902|3.77988e-59|osa:4337526|Os05g0101400; K02902 large subunit ribosomal protein L28 (A)","Ribosome (ko03010)","50S ribosomal protein L28, chloroplastic (Precursor) GN=RPL28 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_18082 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002447",1.22123,5.77348,2.17658,8.56692,2.97485,8.20824,{"v":0.000496796890186218,"d":"4.97E-04"},1.74622625175438,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: xylan catabolic process (GO:0045493);; ","--","--","Putative Pol polyprotein from transposon element Bs1 OS=Zea mays (Maize) PE=3 SV=1","S","Function unknown","hypothetical protein OsI_00280 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003753",2.54441,6.65438,2.95679,5.66157,0.405371,9.94616,0.00685459381926318,1.7424078978534,"up","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: oligopeptide transport (GO:0006857);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: divalent metal ion transport (GO:0070838);; ","--","--","Protein NRT1/ PTR FAMILY 6.2 GN=F18A8.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_02405 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036861",1.86026,7.44065,2.65856,11.7382,2.46926,5.88961,0.00532102164810211,1.74060963918028,"up","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 (Precursor) GN=IMK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","Leucine Rich Repeat family protein, expressed [Oryza sativa Japonica Group]"]
["gene:BGIOSGA026484",42.0901,205.512,80.3037,195.011,47.2128,198.286,{"v":1.14391033650964e-07,"d":"1.14E-07"},1.738312875081,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: photosystem I reaction center (GO:0009538);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Biological Process: photosynthesis (GO:0015979);; ","K02692|3.82798e-130|osa:4346326|Os08g0560900; K02692 photosystem I subunit II (A)","Photosynthesis (ko00195)","Photosystem I reaction center subunit II, chloroplastic (Precursor) GN=psaD OS=Hordeum vulgare (Barley) PE=1 SV=1","H","Coenzyme transport and metabolism","Os08g0560900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018221",3.61172,11.39632,3.82112,15.27069,2.144937,20.9292,0.00139761892295164,1.73378403487043,"up","[A]","RNA processing and modification ","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plastid (GO:0009536);; ","--","--","Probable E3 ubiquitin ligase SUD1 GN=F28A23.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","hypothetical protein OsI_19603 [Oryza sativa Indica Group] "]
["gene:BGIOSGA008629",3.44913,11.97245,4.57514,11.86813,1.855049,10.11584,{"v":0.000538145137923809,"d":"5.38E-04"},1.72451366404486,"up","[IR]","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At5g33370 (Precursor) GN=At5g33370 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Os02g0617400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA036259",1.015882,3.8906616533,0.988312,3.663530267,1.31312494,1.8664397138738,0.00749567452580131,1.72373843196598,"up","[F]","Nucleotide transport and metabolism ","Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: dihydrofolate reductase activity (GO:0004146);; Molecular Function: thymidylate synthase activity (GO:0004799);; Biological Process: dTMP biosynthetic process (GO:0006231);; Biological Process: glycine biosynthetic process (GO:0006545);; Biological Process: one-carbon metabolic process (GO:0006730);; Biological Process: methylation (GO:0032259);; Biological Process: DNA endoreduplication (GO:0042023);; Biological Process: tetrahydrofolate biosynthetic process (GO:0046654);; Biological Process: oxidation-reduction process (GO:0055114);; ","K13998|0|dosa:Os12t0446900-01|Os12g0446900; Similar to bifunctional dihydrofolate reductase-thymidylate synthase.; K13998 dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] (A)","Pyrimidine metabolism (ko00240);; One carbon pool by folate (ko00670);; Folate biosynthesis (ko00790)","Thymidylate synthase OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=2","H","Coenzyme transport and metabolism","hypothetical protein OsJ_35972 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA036744",1.1725,4.84412,1.44587,5.04659,1.37361,3.17875,0.00277614805040122,1.72187640249765,"up","--","--","Cellular Component: cytosol (GO:0005829);; ","--","--","--","S","Function unknown","Os12g0120000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA007719",1.50976,5.38085,1.90554,7.15107,1.62616,3.97229,0.00604068882856278,1.71392905934005,"up","--","--","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Cellular Component: kinetochore (GO:0000776);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Biological Process: DNA replication initiation (GO:0006270);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: mitotic spindle assembly checkpoint (GO:0007094);; Biological Process: cell proliferation (GO:0008283);; Cellular Component: chromocenter (GO:0010369);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; ","K02178|0|osa:4328593|Os02g0193600; K02178 checkpoint serine/threonine-protein kinase [EC:2.7.11.1] (A)","--","Mitotic spindle checkpoint protein BUBR1 GN=F4P9.33 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","D","Cell cycle control, cell division, chromosome partitioning","hypothetical protein OsI_06209 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008105",8.80717,30.9899,14.3325,37.6428,7.77042,32.7059,{"v":4.07977790645612e-05,"d":"4.08E-05"},1.71114601368258,"up","[HC]","--","Molecular Function: copper ion binding (GO:0005507);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Fruit protein pKIWI502 GN=pKIWI502 OS=Actinidia deliciosa (Kiwi) PE=2 SV=1","R","General function prediction only","Os02g0328300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018704",37.70785,227.4404,136.7078,363.5562,67.86172,465.8666,0.00682317747758809,1.70870612586785,"up","--","--","--","--","--","--","--","--","Os05g0178300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013918",9.91782,27.35428,14.12628,38.4306,7.63627,42.3917,{"v":1.20317725017913e-06,"d":"1.20E-06"},1.70394140224508,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: thylakoid membrane organization (GO:0010027);; Molecular Function: rRNA binding (GO:0019843);; Biological Process: ribosome biogenesis (GO:0042254);; ","K02990|1.80057e-79|osa:4334749|Os03g0843400; K02990 small subunit ribosomal protein S6 (A)","Ribosome (ko03010)","30S ribosomal protein S6 alpha, chloroplastic (Precursor) GN=RPS6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsJ_13329 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA019873",3.758146,12.0057972,5.326176,12.3292822,3.2126211,12.0287,{"v":6.02767922185316e-06,"d":"6.03E-06"},1.7037051378407,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: beta-N-acetylhexosaminidase activity (GO:0004563);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K12373|0|osa:4338802|Os05g0415700; K12373 hexosaminidase [EC:3.2.1.52] (A)","Other glycan degradation (ko00511);; Amino sugar and nucleotide sugar metabolism (ko00520);; Glycosaminoglycan degradation (ko00531);; Glycosphingolipid biosynthesis - globo series (ko00603);; Glycosphingolipid biosynthesis - ganglio series (ko00604)","Beta-hexosaminidase 3 (Precursor) GN=F5I14.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_19972 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008731",19.1014,55.9093,16.8413,62.5795,9.52777,38.8864,{"v":0.000602009621938044,"d":"6.02E-04"},1.70241226587726,"up","--","--","--","--","--","--","--","--","--"]
["gene:BGIOSGA029363",10.5809,30.9583,13.6664,38.7538,6.87153,34.8297,{"v":2.19983008726978e-05,"d":"2.20E-05"},1.69887888322901,"up","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: response to salicylic acid (GO:0009751);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: response to UV-B (GO:0010224);; ","K09422|3.51657e-170|osa:4347711|Os09g0538400; K09422 myb proto-oncogene protein, plant (A)","--","Myb-related protein Hv1 GN=MYB1 OS=Hordeum vulgare (Barley) PE=2 SV=1","K","Transcription","Os09g0538400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA007884",4.16428,15.6956,6.62272,18.8144,4.00393,17.139,0.00285061121096818,1.69784897116862,"up","--","--","--","--","--","--","--","--","hypothetical protein OsI_06551 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025008",12.85782,49.2448,26.6763,49.5781,3.93323,47.7008,{"v":1.93312732905077e-05,"d":"1.93E-05"},1.69695664073952,"up","--","--","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: nitrite reductase complex [NAD(P)H] (GO:0009344);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: photosystem II oxygen evolving complex (GO:0009654);; Biological Process: photosynthetic electron transport chain (GO:0009767);; Biological Process: starch biosynthetic process (GO:0019252);; Cellular Component: extrinsic component of membrane (GO:0019898);; Cellular Component: chloroplast photosystem II (GO:0030095);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156);; ","K08901|3.9152e-140|osa:4342192|Os07g0105600; K08901 photosystem II oxygen-evolving enhancer protein 3 (A)","Photosynthesis (ko00195)","PsbQ-like protein 2, chloroplastic (Precursor) GN=T13O15.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os07g0105600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA038287",15.0425,89.957,26.6681,64.4877,15.5283,48.2807,0.0080978973069238,1.69625308914568,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: apoplast (GO:0048046);; ","--","--","Protein ASPARTIC PROTEASE IN GUARD CELL 2 (Precursor) GN=ASPG2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsJ_25435 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA030967",0.9620164408562,3.70860846054485,1.58323023547893,3.5273035124251,1.22228902982186,4.188426353741,0.00257009847800812,1.69363947945627,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: tRNA metabolic process (GO:0006399);; Molecular Function: rRNA methyltransferase activity (GO:0008649);; Cellular Component: plastid (GO:0009536);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: rRNA methylation (GO:0031167);; Biological Process: protein targeting to chloroplast (GO:0045036);; ","K03500|0|osa:4347368|Os09g0477900; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (A)","--","--","A","RNA processing and modification","hypothetical protein OsI_31764 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009901",5.52973,30.18085,9.9681,24.55346,5.86944,18.68812,{"v":0.000383552831267342,"d":"3.84E-04"},1.68985304297671,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_13324 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014237",90.2735,327.397,98.9292,329.847,62.6196,237.156,{"v":1.47701448788047e-06,"d":"1.48E-06"},1.68834242203075,"up","--","--","Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","pEARLI1-like lipid transfer protein 1 (Precursor) GN=AZI1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","Os04g0644400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA009813",3.6376583219,10.971118858,6.25325286,16.2220777832,2.43779191956,15.328322883,0.00128009567795438,1.6850803823258,"up","--","--","Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Biological Process: photosystem II assembly (GO:0010207);; ","--","--","Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic (Precursor) GN=T25N20.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_13500 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011124",4.90151,17.7006,12.9401,29.3906,3.07174,25.3544,0.00296138946752969,1.68298569655284,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Proline-rich protein 4 (Precursor) GN=PRP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_10730 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032262",11.45807,34.1368,10.50328,37.8906,7.39997,29.9211,{"v":2.0056939553181e-06,"d":"2.01E-06"},1.68141630165073,"up","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: cell communication (GO:0007154);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","Glucan endo-1,3-beta-glucosidase 11 (Precursor) GN=At1g32860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_32809 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005179",37.237536,96.040419,52.5589001,145.22523,22.09494359264,137.78883,{"v":1.79339382859522e-06,"d":"1.79E-06"},1.68041436772145,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: manganese ion binding (GO:0030145);; Molecular Function: nutrient reservoir activity (GO:0045735);; Cellular Component: apoplast (GO:0048046);; ","--","--","Germin-like protein 1-3 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os01g0952000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021510",22.2262,88.4669,22.5939,77.5226,19.1207,45.148,0.00232175865469089,1.67777351888412,"up","[F]","Nucleotide transport and metabolism ","Biological Process: DNA replication (GO:0006260);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: deoxyribonucleoside diphosphate metabolic process (GO:0009186);; Biological Process: programmed cell death (GO:0012501);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: transition metal ion binding (GO:0046914);; Biological Process: regulation of cell cycle (GO:0051726);; Biological Process: oxidation-reduction process (GO:0055114);; ","K10808|3.42355e-178|dosa:Os06t0257450-01|Os06g0257450, STRIPE_1, ST1; Ribonucleotide reductase, Chloroplast biogenesis; K10808 ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] (A)","Purine metabolism (ko00230);; Pyrimidine metabolism (ko00240);; Glutathione metabolism (ko00480)","Ribonucleoside-diphosphate reductase small chain B GN=RNR2B OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","F","Nucleotide transport and metabolism","hypothetical protein OsI_22421 [Oryza sativa Indica Group]"]
["gene:BGIOSGA007801",7.15624033,35.36307,15.238299,42.4332,5.53044,23.01885579,0.00207461779871668,1.6745154861901,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: radial pattern formation (GO:0009956);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: leaf vascular tissue pattern formation (GO:0010305);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Tetraspanin-2 GN=TET2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Os02g0219700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA032652",6.03996,13.69587,6.7916,19.18208,2.585637,22.43017,{"v":0.000610905233083891,"d":"6.11E-04"},1.67063812198213,"up","--","--","Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","Benzyl alcohol O-benzoyltransferase GN=HSR201 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_32974 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001254",1.280794,5.250892302,1.71225,5.44682,1.42979,3.220341,{"v":0.000428143918082354,"d":"4.28E-04"},1.67041616937597,"up","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10401|0|dosa:Os01t0605500-00|Os01g0605500; Kinesin, motor region domain containing protein.; K10401 kinesin family member 18/19 (A)","--","Kinesin-13A GN=KINESIN-13A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","hypothetical protein OsI_02766 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001671",0.93963057199608,7.9619997,2.096239326783,5.61336877631,1.6431267337,6.1172584498,0.00564385313405734,1.66889209341588,"up","--","--","Cellular Component: chloroplast (GO:0009507);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II oxygen evolving complex assembly (GO:0010270);; ","--","--","Protein LOW PSII ACCUMULATION 1, chloroplastic (Precursor) GN=LPA1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os01g0358300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019111",2.49396000386918,13.360800107424,6.615860100669,10.6827000532644,2.29084129792,12.6725000573624,{"v":0.000808302363028856,"d":"8.08E-04"},1.66557183463941,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","hypothetical protein OsI_18299 [Oryza sativa Indica Group] "]
["gene:BGIOSGA006522",2.1451351709,8.61930462840028,2.64084882350202,9.86558373420001,2.220473426,4.897069852,0.00337425512197553,1.66500476396828,"up","--","--","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: mitotic cell cycle (GO:0000278);; Biological Process: phragmoplast assembly (GO:0000914);; Cellular Component: microtubule associated complex (GO:0005875);; Biological Process: cytokinesis, initiation of separation (GO:0007108);; Cellular Component: preprophase band (GO:0009574);; Biological Process: histone phosphorylation (GO:0016572);; ","K18636|0|osa:4329290|Os02g0459300; K18636 microtubule-binding protein TANGLED1 (A)","--","Microtubule-binding protein TANGLED1 GN=TAN1 OS=Zea mays (Maize) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_07109 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013173",1.1841,5.65442,2.61923,4.83756,0.530207,3.73563,0.0051802272596404,1.66445800317441,"up","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: membrane (GO:0016020);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","S","Function unknown","Os03g0628800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002272",1.4735373,10.15762,3.83755,12.47676,1.5405267251,4.994516,0.00201990874575509,1.66343109385788,"up","--","--","--","--","--","--","--","--","Os01g0176500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA006268",3.23833,15.78013,8.51981,15.59643,5.13257,21.44479,{"v":2.30960756618511e-05,"d":"2.31E-05"},1.66320170875851,"up","[P]","Inorganic ion transport and metabolism ","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: L-ascorbate peroxidase activity (GO:0016688);; Molecular Function: heme binding (GO:0020037);; Cellular Component: chloroplast membrane (GO:0031969);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00434|0|osa:4329643|Os02g0553200; K00434 L-ascorbate peroxidase [EC:1.11.1.11] (A)","Ascorbate and aldarate metabolism (ko00053);; Glutathione metabolism (ko00480)","Probable L-ascorbate peroxidase 8, chloroplastic (Precursor) GN=P0470G10.5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","R","General function prediction only","hypothetical protein OsI_07630 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032538",143.8136,334.357,197.1572,456.265,72.1704,535.091,{"v":0.000129286369132948,"d":"1.29E-04"},1.6578694221469,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Proline-rich protein 4 (Precursor) GN=PRP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_32759 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017928",4.75733,18.6465,11.9644,27.5218,4.44967,23.0873,{"v":0.000110975978794469,"d":"1.11E-04"},1.65773580105822,"up","[R]","General function prediction only ","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Aldo-keto reductase family 4 member C10 GN=AKR4C10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os05g0456300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017793",19.8435,81.9477,36.8703,70.9133,17.5042,73.1217,{"v":1.54111300884488e-06,"d":"1.54E-06"},1.65750826295035,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: phosphoglycerate kinase activity (GO:0004618);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glycolytic process (GO:0006096);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Cellular Component: membrane (GO:0016020);; Biological Process: phosphorylation (GO:0016310);; Biological Process: reductive pentose-phosphate cycle (GO:0019253);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; ","K00927|0|dosa:Os05t0496200-01|Os05g0496200; Similar to 3-phosphoglycerate kinase (Fragment).; K00927 phosphoglycerate kinase [EC:2.7.2.3] (A)","Glycolysis / Gluconeogenesis (ko00010);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200);; Biosynthesis of amino acids (ko01230)","Phosphoglycerate kinase, chloroplastic (Precursor) OS=Triticum aestivum (Wheat) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_20474 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030423",1.16557252999,7.74826,3.521501,7.614416,1.7997200492,6.27389,0.00635208847692502,1.65072912977243,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: photosynthesis, light reaction (GO:0019684);; ","--","--","Rhodanese-like domain-containing protein 9, chloroplastic (Precursor) GN=STR9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_30678 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005088",2.28836436,6.7561632903,2.92616025,9.778940241871,2.8324857251474,10.8958220587,{"v":0.000933923985370855,"d":"9.34E-04"},1.65024254534537,"up","--","--","Biological Process: suberin biosynthetic process (GO:0010345);; Molecular Function: hydroxycinnamoyltransferase activity (GO:0050734);; Biological Process: cell wall pectin biosynthetic process (GO:0052325);; ","K15400|0|dosa:Os01t0924933-01|Os01g0924933; Transferase family protein.; K15400 omega-hydroxypalmitate O-feruloyl transferase [EC:2.3.1.188] (A)","Cutin, suberine and wax biosynthesis (ko00073)","Omega-hydroxypalmitate O-feruloyl transferase GN=MEE6.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_04996 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023107",16.572,53.5787,13.9185,55.2168,11.4444,33.0155,{"v":0.000180172696273987,"d":"1.80E-04"},1.64884904030208,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00423|0|dosa:Os06t0567200-01|Os06g0567200; Cupredoxin domain containing protein.; K00423 L-ascorbate oxidase [EC:1.10.3.3] (A)","Ascorbate and aldarate metabolism (ko00053)","L-ascorbate oxidase (Precursor) OS=Cucumis sativus (Cucumber) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_23411 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027051",1.8221285,8.54763,2.733074,7.88893,2.518292,7.52342,0.00146945428671978,1.64706755017067,"up","[CR]","--","Biological Process: sulfur amino acid metabolic process (GO:0000096);; Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: NADPH:quinone reductase activity (GO:0003960);; Biological Process: glycine catabolic process (GO:0006546);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: oxidoreduction coenzyme metabolic process (GO:0006733);; Biological Process: vitamin metabolic process (GO:0006766);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cellular amino acid biosynthetic process (GO:0008652);; Biological Process: aromatic amino acid family metabolic process (GO:0009072);; Biological Process: lipoate metabolic process (GO:0009106);; Biological Process: coenzyme biosynthetic process (GO:0009108);; Biological Process: nucleotide metabolic process (GO:0009117);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Cellular Component: stromule (GO:0010319);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: regulation of lipid metabolic process (GO:0019216);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: secondary metabolic process (GO:0019748);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Molecular Function: enone reductase activity (GO:0035671);; Molecular Function: 2-alkenal reductase (NADP+) activity (GO:0035798);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: sulfur compound biosynthetic process (GO:0044272);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Quinone oxidoreductase-like protein At1g23740, chloroplastic (Precursor) GN=At1g23740 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","Os08g0379400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA015834",7.4717996832,22.72796926952,10.9704927092,34.269065572,9.095034,31.76695633286,{"v":1.00478122475732e-06,"d":"1.00E-06"},1.64569394871014,"up","--","--","Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: lyase activity (GO:0016829);; ","K01728|0|osa:4335013|Os04g0137100; K01728 pectate lyase [EC:4.2.2.2] (A)","Pentose and glucuronate interconversions (ko00040)","Probable pectate lyase 15 (Precursor) GN=At4g13710 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_14719 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026515",1.81106209273993,7.33239821694,2.51647342396,7.926421106239,2.943504964,7.74465827514336,0.00174483595366378,1.63985175217254,"up","[MG]","--","Molecular Function: translation initiation factor activity (GO:0003743);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translational initiation (GO:0006413);; Cellular Component: chloroplast thylakoid (GO:0009534);; Biological Process: response to blue light (GO:0009637);; Biological Process: response to red light (GO:0010114);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; ","--","--","Uncharacterized protein ycf39 GN=ycf39 OS=Cyanophora paradoxa PE=3 SV=1","G","Carbohydrate transport and metabolism","Os08g0553800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017986",1.97309,5.39331,2.19895,9.46503,3.57183,10.7252,0.00329411663194989,1.63824446792927,"up","--","--","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: negative regulation of catalytic activity (GO:0043086);; ","--","--","Subtilisin-like protease (Precursor) GN=At5g67360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_20091 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029640",14.5189,51.0814,20.5512,54.378,13.1889,57.5569,{"v":1.1026116036243e-06,"d":"1.10E-06"},1.63318588273233,"up","[K]","Transcription ","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: asymmetric cell division (GO:0008356);; Biological Process: response to heat (GO:0009408);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|0|osa:4347251|Os09g0455200; K09419 heat shock transcription factor, other eukaryote (A)","--","Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","K","Transcription","Os09g0455200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA020359",56.6131,236.235,82.0221,221.871,59.8421,188.865,{"v":8.23490408506951e-07,"d":"8.23E-07"},1.63198881677525,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Fasciclin-like arabinogalactan protein 13 (Precursor) GN=FLA13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","Os05g0563600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011418",0.62065457618,4.7777,1.667634174,3.765445,1.1502790871,3.749377,0.00578360816880203,1.63182021554571,"up","--","--","Molecular Function: catalytic activity (GO:0003824);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Cellular Component: NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","--","--","S","Function unknown","hypothetical protein OsI_10093 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020666",2.4799428974,12.58573,8.408631152,15.02285,1.6406760592,12.46313,0.00725734035710472,1.63090515080787,"up","--","--","--","--","--","CRIB domain-containing protein RIC10 GN=RIC10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","Os06g0681300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018452",2.7492771592,7.815485,4.0617593,9.861061,2.068647,11.33254,{"v":0.00021464163148568,"d":"2.15E-04"},1.62802543767403,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: protein binding, bridging (GO:0030674);; Molecular Function: actin filament binding (GO:0051015);; ","--","--","Glucan 1,3-beta-glucosidase {ECO:0000250|UniProtKB:Q7Z9L3} (Fragments) OS=Pseudotsuga menziesii (Douglas-fir) PE=1 SV=1","R","General function prediction only","Os05g0244500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029869",1.317283,2.850764,1.809036,4.561944,1.249319,5.40341,0.00665624579821459,1.62568701256587,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; ","--","--","Serine/threonine-protein kinase CDL1 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_31147 [Oryza sativa Indica Group]"]
["gene:BGIOSGA035830",1.012901,2.870542,1.020634,3.65221,1.024137,2.62702,{"v":0.000990157261167477,"d":"9.90E-04"},1.6238389420071,"up","[Z]","Cytoskeleton ","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: DNA methylation (GO:0006306);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: minus-end-directed microtubule motor activity (GO:0008569);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: histone H3-K9 methylation (GO:0051567);; ","K10406|0|obr:102717952|kinesin-3-like; K10406 kinesin family member C2/C3 (A)","--","Kinesin-4 GN=F2P16.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Z","Cytoskeleton","hypothetical protein OsI_39123 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005921",2.38993,7.05436,2.63459,7.64773,0.953569,6.32273,0.00760591104912258,1.61975364278818,"up","--","--","--","--","--","--","--","--","hypothetical protein OsI_08307 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000193",7.34365,23.0719,8.10323,33.5232,6.42146,17.0031,0.00270747102517541,1.61895429435943,"up","--","--","Biological Process: cytokinesis by cell plate formation (GO:0000911);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: membrane (GO:0016020);; Biological Process: spindle assembly (GO:0051225);; ","--","--","--","S","Function unknown","Os01g0931200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA036880",238.2167,541.4052,255.7262,863.6018,286.0106,1153.1015,0.00387732012897166,1.61419101369255,"up","--","--","Biological Process: lipid transport (GO:0006869);; Biological Process: defense response (GO:0006952);; Molecular Function: lipid binding (GO:0008289);; ","--","--","Non-specific lipid-transfer protein 3 (Precursor) GN=LTP110-B OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","Os11g0115100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA025826",12.57359,44.3757,22.77742,52.87,11.16677,62.0696,{"v":1.86399892438749e-06,"d":"1.86E-06"},1.61388351971473,"up","--","--","Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: protein transport (GO:0015031);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: response to karrikin (GO:0080167);; Biological Process: granum assembly (GO:0090391);; ","--","--","Protein LHCP TRANSLOCATION DEFECT (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","RecName: Full=Protein LHCP TRANSLOCATION DEFECT; Flags: Precursor [Oryza sativa Indica Group] "]
["gene:BGIOSGA005485",4.139862,15.61624,9.51483,21.9046,4.90797,17.39051,{"v":0.000588614059930924,"d":"5.89E-04"},1.60987105951002,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein folding (GO:0006457);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; ","K04078|2.22842e-159|osa:4330925|Os02g0781400; K04078 chaperonin GroES (A)","--","20 kDa chaperonin, chloroplastic (Precursor) GN=T1M15.120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsJ_08612 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA016576",105.69399,376.5303,189.43138,414.8848,71.56096,427.8679,{"v":2.04365581876474e-06,"d":"2.04E-06"},1.60904552812318,"up","--","--","Biological Process: defense response (GO:0006952);; Biological Process: response to biotic stimulus (GO:0009607);; ","--","--","MLP-like protein 423 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_16233 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027890",2.04557,7.52779,3.23825,7.52031,1.26082,5.83849,{"v":0.000678711340517649,"d":"6.79E-04"},1.60672143266287,"up","[S]","Function unknown ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Probable LRR receptor-like serine/threonine-protein kinase At1g53420 (Precursor) GN=At1g53420 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","T","Signal transduction mechanisms","Os08g0117700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021315",16.07274,64.484,37.43281,99.3997,27.74115,112.0543,{"v":0.000610905233083891,"d":"6.11E-04"},1.60422588372705,"up","--","--","Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast (GO:0009507);; Biological Process: plastid organization (GO:0009657);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Molecular Function: heat shock protein binding (GO:0031072);; Molecular Function: unfolded protein binding (GO:0051082);; ","--","--","--","R","General function prediction only","Os06g0332800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012911",1.854315,5.369213,2.1632018582,7.545356,2.644951,5.927633,{"v":0.000579338858902539,"d":"5.79E-04"},1.60338789865064,"up","--","--","--","--","--","--","S","Function unknown","expressed protein [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005130",23.4443,84.8942,35.8712,75.8327,16.3988,81.5774,{"v":8.93223531037256e-05,"d":"8.93E-05"},1.60235743898899,"up","--","--","--","--","--","--","--","--","hypothetical protein OsI_05120 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033202",7.06357,30.3796,10.5792,22.6687,5.56385,21.1804,0.00473363459525617,1.60113378117062,"up","[IQR]","--","Molecular Function: NADPH dehydrogenase activity (GO:0003959);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to ethylene (GO:0009723);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photosynthesis (GO:0015979);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Molecular Function: protochlorophyllide reductase activity (GO:0016630);; Molecular Function: pentaerythritol trinitrate reductase activity (GO:0018548);; Molecular Function: trichloro-p-hydroquinone reductive dehalogenase activity (GO:0052690);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00218|4.3287e-102|osa:4349004|Os10g0496900; K00218 protochlorophyllide reductase [EC:1.3.1.33] (A)","Porphyrin and chlorophyll metabolism (ko00860)","Protochlorophyllide reductase B, chloroplastic (Precursor) GN=OSJNBa0017E08.8 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_34180 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005922",13.404277,34.55062,19.821371,48.613355,10.749208,51.040438,{"v":5.75658137072685e-06,"d":"5.76E-06"},1.59396181588444,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: ribosome (GO:0005840);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: translation (GO:0006412);; Biological Process: protein targeting to membrane (GO:0006612);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; ","--","--","Vesicle-associated protein 2-1, N-terminally processed GN=PVA21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_08304 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036024",6.585390721088,22.02264,6.787630615677,24.887027,5.2770948,14.60611,{"v":0.000467638449281719,"d":"4.68E-04"},1.59295090971918,"up","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: Golgi membrane (GO:0000139);; Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: regulation of cell proliferation (GO:0042127);; Molecular Function: mannan synthase activity (GO:0051753);; ","K00770|0|dosa:Os12t0555600-01|Os12g0555600, ND1, NARROW_LEAF_AND_DWARF_1; Cellulose synthase-like protein, Cell wall biosynthesis; K00770 1,4-beta-D-xylan synthase [EC:2.4.2.24] (A)","Starch and sucrose metabolism (ko00500);; Amino sugar and nucleotide sugar metabolism (ko00520)","Cellulose synthase-like protein D4 GN=OsJ_035046 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","--","--","RecName: Full=Cellulose synthase-like protein D4; AltName: Full=OsCslD4 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026818",3.39203,13.9731,6.75513,10.2229,1.69094,14.1759,0.00182363244252895,1.58812858616204,"up","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","Probable carboxylesterase 2 GN=CXE2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","V","Defense mechanisms","hypothetical protein OsI_29584 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033501",2.512232,6.17462,3.330483,9.36775,2.43208,8.29319,0.00725792101923589,1.58767771989427,"up","[E]","Amino acid transport and metabolism ","Molecular Function: shikimate kinase activity (GO:0004765);; Molecular Function: ATP binding (GO:0005524);; Biological Process: glycine catabolic process (GO:0006546);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: oxidoreduction coenzyme metabolic process (GO:0006733);; Biological Process: vitamin metabolic process (GO:0006766);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; Biological Process: lipoate metabolic process (GO:0009106);; Biological Process: coenzyme biosynthetic process (GO:0009108);; Biological Process: nucleotide metabolic process (GO:0009117);; Cellular Component: chloroplast (GO:0009507);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: secondary metabolic process (GO:0019748);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cell wall modification (GO:0042545);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","Probable inactive shikimate kinase like 2, chloroplastic (Precursor) GN=SKL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","Os10g0577700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA022420",8.50976,29.7023,15.6777,39.0025,4.82784,26.5165,0.00958135416212909,1.58758031592837,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_21893 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021172",2.095196,6.261459,4.866488,12.03198,2.626523,11.478354,{"v":0.000618099730153956,"d":"6.18E-04"},1.58298332622752,"up","--","--","Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K15285|0|obr:102706483|uncharacterized LOC102706483; K15285 solute carrier family 35, member E3 (A)","--","Uncharacterized membrane protein At1g06890 GN=At1g06890 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_23132 [Oryza sativa Indica Group] "]
["gene:BGIOSGA009252",1.757442,5.23185,1.667493,5.9024,1.532526,3.36633,{"v":0.000343333855518181,"d":"3.43E-04"},1.58189118013473,"up","[Z]","Cytoskeleton ","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Cellular Component: phragmoplast (GO:0009524);; Cellular Component: plastid (GO:0009536);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: histone H3-K9 methylation (GO:0051567);; ","K10394|0|obr:102713992|osmotic avoidance abnormal protein 3-like; K10394 kinesin family member 3/17 (A)","--","Kinesin-4 GN=F2P16.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Z","Cytoskeleton","hypothetical protein OsI_09383 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001883",3.83704,19.3525,8.84944,14.9776,4.97836,19.4517,0.00529730567336002,1.58135310803663,"up","--","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: electron transport chain (GO:0022900);; Cellular Component: anchored component of membrane (GO:0031225);; ","--","--","Lamin-like protein (Precursor) GN=At5g15350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os01g0281600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017466",0.574678266000271,2.094432128,0.802151385303,2.16139681224189,0.6796069303,1.9639585329,0.00996170545939956,1.57980195390831,"up","--","--","--","--","--","Protein trichome birefringence-like 1 GN=TBL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsJ_19723 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA024867",10.7768,41.6418,9.39421,22.4258,10.0858,33.6547,0.00536966125399358,1.57951414659771,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","S","Function unknown","hypothetical protein OsI_24791 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001324",2.3050959,4.791505149,2.0185797822,6.3350884,1.537784372,7.410360358,0.0013223927830036,1.57941721686307,"up","--","--","Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","Transcription factor bHLH62 GN=F21O3.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","hypothetical protein OsI_02617 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022593",5.57801,11.0246,5.42061,19.9107,4.71505,22.9023,0.00768486936433276,1.57907103777807,"up","--","--","--","--","--","--","--","--","hypothetical protein OsI_22276 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036243",7.47591,25.2464,7.62831,35.9269,10.9527,22.1281,0.00148290548383648,1.5766701903663,"up","--","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Lamin-like protein (Precursor) GN=At5g15350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os12g0454600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA020095",4.26528900351,15.0387441376,5.8244704919,19.26519,4.18677946272,9.4274233929,0.00510488153030437,1.57509446486665,"up","[D]","Cell cycle control, cell division, chromosome partitioning ","Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079);; Biological Process: regulation of cell growth (GO:0001558);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: response to gamma radiation (GO:0010332);; Molecular Function: protein kinase binding (GO:0019901);; Biological Process: cell division (GO:0051301);; ","--","--","Cyclin-B1-5 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","D","Cell cycle control, cell division, chromosome partitioning","hypothetical protein OsI_20444 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008234",0.94913365012101,2.85754796018022,1.03784847687832,2.60855608012095,0.6564426311221,1.80041586493932,0.00765276410225431,1.57202644026769,"up","[Z]","Cytoskeleton ","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10400|0|osa:9270703|Os02g0489800; K10400 kinesin family member 15 (A)","--","Kinesin-like protein KIN12B GN=MDB19.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","hypothetical protein OsI_07265 [Oryza sativa Indica Group]"]
["gene:BGIOSGA035322",4.7422,16.157147,4.4569406718,15.3144836498,3.666765514,12.63979,0.00158360359563226,1.57100591943236,"up","--","--","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: membrane (GO:0016020);; ","--","--","Putative protein NRT1/ PTR FAMILY 2.2 GN=NPF2.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=5 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_36228 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011733",59.8765,186.416,64.4243,263.801,45.9715,132.538,{"v":0.000864447062264482,"d":"8.64E-04"},1.56692859582722,"up","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: vacuole (GO:0005773);; Biological Process: nucleosome assembly (GO:0006334);; Cellular Component: thylakoid (GO:0009579);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K14838|8.9079e-51|zma:100282268|pco082380(357); LOC100282268; K11254 histone H4 (A)","--","Histone H4 OS=Glycine max (Soybean) PE=3 SV=1","B","Chromatin structure and dynamics","hypothetical protein ZEAMMB73_313798 [Zea mays]"]
["gene:BGIOSGA011549",39.7705,111.9947,76.5981,163.0633,26.8302,162.7888,{"v":0.000327721318621705,"d":"3.28E-04"},1.56601076320867,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: cysteine biosynthetic process (GO:0019344);; Molecular Function: rRNA binding (GO:0019843);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02931|1.18863e-167|osa:4331459|Os03g0125000; K02931 large subunit ribosomal protein L5 (A)","Ribosome (ko03010)","50S ribosomal protein L5, chloroplastic (Precursor) GN=RPL5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","Os03g0125000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA037302",30.4735,155.969,81.16,131.737,22.5137,136.894,{"v":0.000346344387356938,"d":"3.46E-04"},1.56313879357502,"up","--","--","Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: photosystem I reaction center (GO:0009538);; Biological Process: plastid organization (GO:0009657);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photosystem II assembly (GO:0010207);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: divalent metal ion transport (GO:0070838);; ","K02699|9.36652e-127|osa:4352085|Os12g0420400; K02699 photosystem I subunit XI (A)","Photosynthesis (ko00195)","Photosystem I reaction center subunit XI, chloroplastic (Precursor) GN=PSAL OS=Hordeum vulgare (Barley) PE=1 SV=1","G","Carbohydrate transport and metabolism","Os12g0420400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA033322",7.24131,23.9704,6.37272,23.6213,7.70689,19.1465,0.00169552755876121,1.5631098548379,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: glutathione transferase activity (GO:0004364);; Biological Process: glutathione metabolic process (GO:0006749);; Cellular Component: chloroplast (GO:0009507);; Biological Process: de-etiolation (GO:0009704);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: lateral root development (GO:0048527);; Biological Process: response to growth hormone (GO:0060416);; Biological Process: response to karrikin (GO:0080167);; ","K00799|5.27201e-155|osa:4349192|Os10g0529300; K00799 glutathione S-transferase [EC:2.5.1.18] (A)","Glutathione metabolism (ko00480)","Probable glutathione S-transferase GSTU6 GN=OSJNBb0038A07.2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","Os10g0529300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA007846",1.00617621771,4.56004813882122,2.137962,2.60654848100002,1.39112336582523,5.27336467765,0.00727755553109339,1.56200668596866,"up","[MG]","--","Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: vacuole (GO:0005773);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: mRNA modification (GO:0016556);; ","--","--","Probable complex I intermediate-associated protein 30 GN=At1g17350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein OsI_06478 [Oryza sativa Indica Group]"]
["gene:BGIOSGA024414",36.4292,90.3251,55.4548,139.202,37.2691,150.222,{"v":0.000632496500082638,"d":"6.32E-04"},1.55945616627858,"up","--","--","--","--","--","--","R","General function prediction only","Os07g0418700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA033186",2.835967,8.19723,3.41404,12.43753,3.67282,11.3629,{"v":8.93223531037256e-05,"d":"8.93E-05"},1.55909645352722,"up","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor) GN=At1g68400 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_34145 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011739",15.04763,47.994,32.7731,63.5924,14.80846,73.9997,{"v":3.94442537277355e-05,"d":"3.94E-05"},1.55695246588223,"up","[K]","Transcription ","Cellular Component: cytosol (GO:0005829);; ","K03626|5.01907e-84|osa:4331439|Os03g0121700; K03626 nascent polypeptide-associated complex subunit alpha (A)","--","Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda (Loblolly pine) PE=2 SV=1","K","Transcription","Os03g0121700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013992",1.245774,4.01337,1.798212,4.21227,1.036926,3.89366,0.00836398009041539,1.55621669285076,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: xylem development (GO:0010089);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: xylan biosynthetic process (GO:0045492);; ","--","--","--","S","Function unknown","hypothetical protein OsI_14429 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019160",18.1172100000353,30.4666250034043,18.754294,37.58204,7.29490600882847,54.391508,0.00469940597380362,1.5552806960842,"up","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; ","K09422|0|osa:4337756|Os05g0140100; K09422 myb proto-oncogene protein, plant (A)","--","Transcription factor MYB86 GN=F21E10.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","Os05g0140100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002038",41.72111,113.8843,63.8578,121.38449,22.41178,130.494,{"v":3.97065671045389e-06,"d":"3.97E-06"},1.55456479993926,"up","--","--","Cellular Component: chloroplast thylakoid (GO:0009534);; Biological Process: photosynthetic acclimation (GO:0009643);; Molecular Function: phosphoglycerate transmembrane transporter activity (GO:0015120);; Molecular Function: antiporter activity (GO:0015297);; Biological Process: phosphoglycerate transport (GO:0015713);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: photosynthesis, light reaction (GO:0019684);; Cellular Component: chloroplast membrane (GO:0031969);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: triose phosphate transmembrane transport (GO:0035436);; Molecular Function: triose-phosphate transmembrane transporter activity (GO:0071917);; ","K15283|0|osa:4326365|Os01g0239200; K15283 solute carrier family 35, member E1 (A)","--","Triose phosphate/phosphate translocator TPT, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_01091 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027316",11.9073,53.5968,25.7362,57.8342,9.96232,34.1057,0.00816339266749385,1.55010297171088,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","Os08g0269700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA015510",2.51131,4.95658400000196,1.777213,6.68814,1.85516715307079,6.205483,0.00632068658465768,1.54731539281897,"up","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884);; ","--","--","Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor) GN=At3g25660 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_15019 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022419",46.33357,163.6862,69.4033,151.6013,42.10233,131.5708,{"v":2.10132128796174e-05,"d":"2.10E-05"},1.54513930849967,"up","--","--","Molecular Function: inorganic diphosphatase activity (GO:0004427);; Cellular Component: vacuolar membrane (GO:0005774);; Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);; Biological Process: proton transport (GO:0015992);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K01507|0|osa:4340298|Os06g0178900; K01507 inorganic pyrophosphatase [EC:3.6.1.1] (A)","Oxidative phosphorylation (ko00190)","Pyrophosphate-energized vacuolar membrane proton pump OS=Hordeum vulgare (Barley) PE=2 SV=2","S","Function unknown","Os06g0178900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000362",1.910705151182,5.57305551,1.876600728,8.30613866564,2.681632866289,5.52127379863,0.00883072193557425,1.54371978522257,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation release factor activity (GO:0003747);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: translational termination (GO:0006415);; Biological Process: heme biosynthetic process (GO:0006783);; Cellular Component: chloroplast (GO:0009507);; ","--","--","Peptide chain release factor PrfB2, chloroplastic {ECO:0000303|PubMed:21771930} (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_04716 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021615",4.45938,10.9088,4.90793,14.454,4.45845,16.5031,0.00590200920486364,1.53967324076863,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; Molecular Function: silicate transmembrane transporter activity (GO:0015115);; Biological Process: silicate transport (GO:0015708);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: Casparian strip (GO:0048226);; ","K09874|0|osa:4340558|Os06g0228200; K09874 aquaporin NIP (A)","--","Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","Os06g0228200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004756",1.75037,6.54924,2.79947,6.49567,1.7381,6.78466,0.00214388463196228,1.5395527099878,"up","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuolar lumen (GO:0005775);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: vacuolar transport (GO:0007034);; Biological Process: response to nematode (GO:0009624);; Molecular Function: organic phosphonate transmembrane-transporting ATPase activity (GO:0015416);; Cellular Component: ATP-binding cassette (ABC) transporter complex (GO:0043190);; ","--","--","ABC transporter G family member 1 GN=T16B24.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_04343 [Oryza sativa Indica Group]"]
["gene:BGIOSGA024269",3.81263,12.04169,5.74881,12.33682,2.92088,14.89671,{"v":8.28635965532529e-06,"d":"8.29E-06"},1.52960372191475,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: epidermis development (GO:0008544);; Biological Process: embryo development (GO:0009790);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor) GN=GSO1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_26097 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010570",269.226692314,608.03908194,294.39663918,883.603430767,174.189038841,580.52358042,{"v":0.000241361719975905,"d":"2.41E-04"},1.52901798364963,"up","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose metabolic process (GO:0005985);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: biosynthetic process (GO:0009058);; Biological Process: response to cold (GO:0009409);; Biological Process: response to flooding (GO:0009413);; Biological Process: response to carbon dioxide (GO:0010037);; Molecular Function: sucrose synthase activity (GO:0016157);; Biological Process: response to cadmium ion (GO:0046686);; ","K00695|0|osa:4333062|Os03g0401300; K00695 sucrose synthase [EC:2.4.1.13] (A)","Starch and sucrose metabolism (ko00500)","Sucrose synthase 1 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","hypothetical protein OsI_11950 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010838",0.97166080444,1.655171414301,0.758702,2.6889773836,0.707766009,1.68222116402,0.00984180137925154,1.52789711814936,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","hypothetical protein OsI_11353 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011996",2.347072,8.59759,3.39518,12.42564,5.195158,14.18185,{"v":0.000283829245288262,"d":"2.84E-04"},1.52735805303944,"up","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: Golgi apparatus (GO:0005794);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","--","UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 GN=F17M5.90/F17M5.100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_10286 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022682",2.85620593540402,9.89199100000003,3.9415026619929,9.05903007212574,3.61926088380037,10.615764001146,0.00969582816389972,1.52682348031401,"up","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: defense response to virus (GO:0051607);; ","--","--","Protein NSP-INTERACTING KINASE 1 (Precursor) GN=NIK1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","somatic embryogenesis receptor kinase 1-like [Oryza sativa Japonica Group] "]
["gene:BGIOSGA007905",4.84003,20.9938,10.0697,20.4655,4.86241,17.6555,{"v":7.0244783892433e-05,"d":"7.02E-05"},1.52575228643494,"up","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Probable polygalacturonase OS=Vitis vinifera (Grape) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_06620 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020055",2.747373,12.61374,5.92164,15.02638,4.91069,14.80964,{"v":9.26129072622266e-05,"d":"9.26E-05"},1.52425674889457,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: thylakoid (GO:0009579);; Biological Process: photosystem II stabilization (GO:0042549);; ","--","--","Serine/threonine-protein kinase STN8, chloroplastic (Precursor) GN=STN8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_20353 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026439",5.28426,22.86695,9.20044,20.99189,4.699395,23.92696,{"v":6.95150977714281e-06,"d":"6.95E-06"},1.52326103586922,"up","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716);; Biological Process: peptidoglycan biosynthetic process (GO:0009252);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","S","Function unknown","hypothetical protein OsI_27428 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032391",1.0238283,5.5926464701,2.34424550712362,4.64556,1.5842291,4.54708170000007,0.00907878285799903,1.52214075454214,"up","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: oligopeptide transport (GO:0006857);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","Protein NRT1/ PTR FAMILY 8.3 GN=F14H20.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","E","Amino acid transport and metabolism","hypothetical protein OsI_32535 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020659",8.88013,23.9225,16.3822,38.3554,7.43151,34.9243,0.00110691085224234,1.51945971840457,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: large ribosomal subunit (GO:0015934);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: plastid translation (GO:0032544);; ","K02895|1.92372e-137|osa:4341869|Os06g0683200; K02895 large subunit ribosomal protein L24 (A)","Ribosome (ko03010)","50S ribosomal protein L24, chloroplastic (Precursor) GN=RPL24 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","Os06g0683200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA025679",8.628657,32.147552,17.69303230329,27.802461,1.5780500103,29.78724169322,0.00538267332993157,1.51672442907225,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Uncharacterized protein At4g14100 (Precursor) GN=At4g14100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_25962 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015743",2.97821,10.6116,3.64348,9.95925,3.78868,10.9527,{"v":0.000594862011767845,"d":"5.95E-04"},1.5088126543071,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Cytochrome P450 93A3 GN=CYP93A3 OS=Glycine max (Soybean) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","H0102C09.4 [Oryza sativa Indica Group] "]
["gene:BGIOSGA019026",5.24705,9.19517,3.19719,13.1257,3.17789,13.9266,0.00810463200332931,1.50701159765787,"up","--","--","--","--","--","--","S","Function unknown","Os05g0108400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023776",5.3858,14.961,7.49095,17.998,7.2221,28.5543,0.00885077686000949,1.50016037269995,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: cell redox homeostasis (GO:0045454);; ","--","--","Uncharacterized protein At5g39865 GN=At5g39865 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os07g0659900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026706",4.7184566905998,16.17069035015,8.1191899648,17.50972676058,3.778384728511,15.067293,{"v":0.000181497928688701,"d":"1.81E-04"},1.49722727459498,"up","[G]","Carbohydrate transport and metabolism ","Cellular Component: mitochondrion (GO:0005739);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: beta-glucosidase activity (GO:0008422);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: pollen tube growth (GO:0009860);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K01188|0|osa:4345996|Os08g0509400; K01188 beta-glucosidase [EC:3.2.1.21] (A)","Cyanoamino acid metabolism (ko00460);; Starch and sucrose metabolism (ko00500);; Phenylpropanoid biosynthesis (ko00940)","Beta-glucosidase 28 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","Os08g0509400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023231",2.52768925435981,16.10341434475,4.705800719343,16.154744,5.49723409878,11.0165525158995,0.00130709829525626,1.49357354469841,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","--","--","hypothetical protein OsI_23637 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033919",11.9802,21.5944,8.34454,30.6346,7.72205,29.178,0.00190000046853502,1.48875424789434,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","S","Function unknown","hypothetical protein OsI_36260 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033453",6.39712,37.34911,12.50698,28.14865,8.55384,21.63512,0.00894028065808516,1.48837132583521,"up","--","--","Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079);; Molecular Function: protein kinase binding (GO:0019901);; Biological Process: cell division (GO:0051301);; ","--","--","Cyclin-P4-1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os10g0563900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA033201",13.1484,53.2863,21.4604,43.3583,12.0884,40.5848,{"v":0.000152293696864949,"d":"1.52E-04"},1.48773796455693,"up","[IQR]","--","Molecular Function: NADPH dehydrogenase activity (GO:0003959);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to ethylene (GO:0009723);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photosynthesis (GO:0015979);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Molecular Function: protochlorophyllide reductase activity (GO:0016630);; Molecular Function: pentaerythritol trinitrate reductase activity (GO:0018548);; Molecular Function: trichloro-p-hydroquinone reductive dehalogenase activity (GO:0052690);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00218|4.32619e-130|obr:102710906|protochlorophyllide reductase B, chloroplastic-like; K00218 protochlorophyllide reductase [EC:1.3.1.33] (A)","Porphyrin and chlorophyll metabolism (ko00860)","Protochlorophyllide reductase B, chloroplastic (Precursor) GN=OSJNBa0017E08.8 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_34179 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012283",17.7182,43.3987,24.7133,61.5172,13.3517,62.3556,{"v":3.67162177445832e-05,"d":"3.67E-05"},1.48471451026078,"up","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: plastid large ribosomal subunit (GO:0000311);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Biological Process: translation (GO:0006412);; Molecular Function: poly(U) RNA binding (GO:0008266);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: cysteine biosynthetic process (GO:0019344);; Cellular Component: cytosolic ribosome (GO:0022626);; ","K02926|1.3509e-139|osa:4332348|Os03g0265400; K02926 large subunit ribosomal protein L4 (A)","Ribosome (ko03010)","50S ribosomal protein L4, chloroplastic (Precursor) GN=RPL4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_10864 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025518",2.245828,5.303087,1.671402,6.21338,1.511332,4.71106,0.00810463200332931,1.48372330169061,"up","[IQ]","--","Molecular Function: fatty-acyl-CoA synthase activity (GO:0004321);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: plastid (GO:0009536);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Molecular Function: ligase activity (GO:0016874);; ","--","--","4-coumarate--CoA ligase-like 7 GN=P0474B11.33 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein OsI_25635 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003601",14.731,45.5004,15.3046,53.491,12.1754,30.916,0.00148397815571823,1.48320795108235,"up","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11251|1.49673e-49|gmx:100783903|histone H2A-like; K11251 histone H2A (A)","--","Probable histone H2A.5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","B","Chromatin structure and dynamics","PREDICTED: histone H2A-like [Glycine max] "]
["gene:BGIOSGA017799",21.565400974827,95.51279,43.645,90.46974,31.53400436967,97.88624,{"v":0.000129081969739745,"d":"1.29E-04"},1.48186248009722,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: phosphoglycerate kinase activity (GO:0004618);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glycolytic process (GO:0006096);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Cellular Component: membrane (GO:0016020);; Biological Process: phosphorylation (GO:0016310);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; ","--","--","Phosphoglycerate kinase, chloroplastic (Precursor) OS=Triticum aestivum (Wheat) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_20465 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013859",61.1992272195,150.267616741,108.9783252315,242.0874212428,49.6806128528,224.1248158094,0.00106432330348073,1.4790826232442,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: auxin polar transport (GO:0009926);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: regulation of meristem growth (GO:0010075);; Molecular Function: rRNA binding (GO:0019843);; Biological Process: ribosome biogenesis (GO:0042254);; Biological Process: anther development (GO:0048653);; ","K02881|1.22329e-86|obr:102719283|50S ribosomal protein L18, chloroplastic-like; K02881 large subunit ribosomal protein L18 (A)","Ribosome (ko03010)","50S ribosomal protein L18, chloroplastic (Precursor) GN=OSJNBa0010E04.3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Oryza brachyantha]"]
["gene:BGIOSGA035318",4.978346,19.906709,8.780925,22.20188,6.195586,18.32596,{"v":0.000459937206636453,"d":"4.60E-04"},1.47893075191076,"up","--","--","Biological Process: response to nitrate (GO:0010167);; Biological Process: suberin biosynthetic process (GO:0010345);; Biological Process: nitrate transport (GO:0015706);; Molecular Function: hydroxycinnamoyltransferase activity (GO:0050734);; Biological Process: cell wall pectin biosynthetic process (GO:0052325);; ","K15400|0|dosa:Os11t0507200-00|Os11g0507200; Similar to transferase.; K15400 omega-hydroxypalmitate O-feruloyl transferase [EC:2.3.1.188] (A)","Cutin, suberine and wax biosynthesis (ko00073)","Omega-hydroxypalmitate O-feruloyl transferase GN=MEE6.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_36216 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021512",21.94648558313,88.98660972567,25.006424,84.05300889769,28.9655161119,59.874869,{"v":1.14822575284454e-05,"d":"1.15E-05"},1.4784919475488,"up","--","--","Cellular Component: extracellular region (GO:0005576);; Molecular Function: cellulase activity (GO:0008810);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellulose catabolic process (GO:0030245);; Biological Process: cell wall modification involved in multidimensional cell growth (GO:0042547);; ","--","--","Endoglucanase 17 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_22418 [Oryza sativa Indica Group]"]
["gene:BGIOSGA037544",0.799478,2.427706,1.133101,2.91201,0.774487,1.749415,0.00386872393665563,1.47540085610136,"up","[Z]","Cytoskeleton ","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10406|0|osa:4352456|Os12g0547500; K10406 kinesin family member C2/C3 (A)","--","Kinesin-4 GN=F2P16.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Z","Cytoskeleton","hypothetical protein OsI_38637 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006742",20.7731,55.1442,33.8474,71.2862,16.382,76.13,{"v":7.22312217085201e-05,"d":"7.22E-05"},1.47485480854229,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Cellular Component: ribosome (GO:0005840);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translation (GO:0006412);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K02888|8.49562e-88|osa:4328932|Os02g0259600; K02888 large subunit ribosomal protein L21 (A)","Ribosome (ko03010)","50S ribosomal protein L21, chloroplastic (Precursor) GN=RPL21 OS=Spinacia oleracea (Spinach) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_06639 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016266",5.87083,17.2694,7.85316,18.1702,4.19394,19.9693,0.00674729922922002,1.47416633794412,"up","--","--","--","--","--","--","--","--","--"]
["gene:BGIOSGA019901",2.3453205,5.590975,2.333087,9.36471,1.970287,5.274171,0.00425264860542471,1.4712501529255,"up","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","Amino acid permease 3 GN=AAP3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","E","Amino acid transport and metabolism","Os05g0424000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA014585",19.06557,59.8539,25.60062,79.3314,22.84837,52.2863,{"v":1.18313941017059e-05,"d":"1.18E-05"},1.47024367787759,"up","--","--","Molecular Function: lipid transporter activity (GO:0005319);; Biological Process: lipid transport (GO:0006869);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: chloroplast inner membrane (GO:0009706);; Cellular Component: chloroplast outer membrane (GO:0009707);; Biological Process: histone phosphorylation (GO:0016572);; Biological Process: methylglyoxal catabolic process to D-lactate (GO:0019243);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Molecular Function: aspartyl esterase activity (GO:0045330);; ","--","--","Probable pectinesterase 68 (Precursor) GN=MNJ7.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","OSJNBa0010H02.16 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011335",4.90341,18.9913,7.40914,12.2927,5.47652,21.506,0.00252079087414854,1.468774044614,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","S","Function unknown","hypothetical protein OsI_10257 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017501",6.25996,15.4648,6.01106,17.1001,2.84344,13.1479,0.00727755553109339,1.4636193345595,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","Protein MIZU-KUSSEI 1 GN=MIZ1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os05g0577100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018227",18.730598,39.30952,17.74797,43.60187,10.8953036,62.3377,{"v":0.000343103154650493,"d":"3.43E-04"},1.46105711471413,"up","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","Inactive receptor-like serine/threonine-protein kinase At2g40270 (Precursor) GN=At2g40270 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein OsI_19591 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006862",5.4806,18.4179,7.84821,18.2692,4.68552,12.4215,{"v":5.4215031880857e-05,"d":"5.42E-05"},1.45822996220222,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: beta-galactosidase activity (GO:0004565);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: apoplast (GO:0048046);; ","--","--","Beta-galactosidase 4 (Precursor) GN=OsI_006270 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","G","Carbohydrate transport and metabolism","RecName: Full=Beta-galactosidase 4; Short=Lactase 4; Flags: Precursor [Oryza sativa Indica Group] "]
["gene:BGIOSGA002507",5.3094532208,16.11426,7.659825,17.293784,7.487378052,26.33207,0.00124491053483203,1.45712038727796,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","--","--","S","Function unknown","hypothetical protein OsI_00151 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012103",1.62939402146,5.2145,2.028982,6.63189,1.64900722,3.300934,0.00844212979661542,1.45549520213322,"up","--","--","Cellular Component: spindle (GO:0005819);; Cellular Component: microtubule (GO:0005874);; Biological Process: mitotic nuclear division (GO:0007067);; ","--","--","Protein TPX2 GN=TPX2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_10504 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026318",2.30646239005,9.9923145027,4.4922441164,9.56275348800085,4.1390398714,8.3573377867,0.00306856145807492,1.45244009883423,"up","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: multicellular organismal development (GO:0007275);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: protein ubiquitination (GO:0016567);; ","K04506|0|osa:4344172|Os07g0659800; K04506 E3 ubiquitin-protein ligase SIAH1 [EC:6.3.2.19] (A)","Ubiquitin mediated proteolysis (ko04120)","E3 ubiquitin-protein ligase SINAT5 GN=SINAT5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsJ_25443 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA008874",9.97959,26.80001,9.37163,35.44228,9.66906,17.64518,0.00235772410550636,1.44535037253963,"up","[R]","General function prediction only ","Biological Process: cell division (GO:0051301);; ","K03363|0|osa:4330430|Os02g0700100; K03363 cell division cycle 20, cofactor of APC complex (A)","Ubiquitin mediated proteolysis (ko04120)","Cell division cycle 20.1, cofactor of APC complex GN=F17M5.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","D","Cell cycle control, cell division, chromosome partitioning","hypothetical protein OsI_08587 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013958",6.03432031,23.55939,9.776686,29.25019,10.241569195,25.91663,{"v":5.36333306018565e-05,"d":"5.36E-05"},1.44466291392963,"up","[R]","General function prediction only ","Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein folding (GO:0006457);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Cellular Component: integral component of chloroplast outer membrane (GO:0031359);; Biological Process: protein targeting to chloroplast (GO:0045036);; Biological Process: response to cadmium ion (GO:0046686);; ","--","--","Ankyrin repeat domain-containing protein 2 GN=F15J1.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","Ankyrin repeat domain protein 2, putative, expressed [Oryza sativa Japonica Group]"]
["gene:BGIOSGA018219",2.67165,6.55362,2.4138,7.34576,2.32577,8.21652,0.00940513963654135,1.4414239704365,"up","--","--","--","--","--","Protein trichome birefringence-like 33 GN=TBL33 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Os05g0356700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019303",4.5172166167,11.02577,4.629983,11.370933563,1.7834660251,10.845785,{"v":0.000707816833743024,"d":"7.08E-04"},1.43989142699188,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","Os05g0187500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026650",1.140714,4.07202,2.07673,3.51141,0.658232,3.01699,0.00528030602668253,1.43985082566521,"up","[G]","Carbohydrate transport and metabolism ","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: alpha-amylase activity (GO:0004556);; Biological Process: amylopectin biosynthetic process (GO:0010021);; Cellular Component: chloroplast isoamylase complex (GO:0010368);; Molecular Function: isoamylase activity (GO:0019156);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Molecular Function: cation binding (GO:0043169);; ","K01214|0|osa:4346068|Os08g0520900; K01214 isoamylase [EC:3.2.1.68] (A)","--","Isoamylase 1, chloroplastic (Precursor) GN=ISA1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_29923 [Oryza sativa Indica Group] "]
["gene:BGIOSGA004201",19.262202285,62.58377,33.00456,72.2127,21.7519676,74.93958,{"v":0.000111448724190561,"d":"1.11E-04"},1.43850634425745,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Cellular Component: membrane (GO:0016020);; ","K02968|1.07534e-114|osa:4325273|Os01g0678600; K02968 small subunit ribosomal protein S20 (A)","Ribosome (ko03010)","30S ribosomal protein S20, chloroplastic (Precursor) GN=RPS20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_03263 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022192",3.03833,8.09911,4.35786,8.49777,1.3209,7.71778,0.00131485725687107,1.43510981777934,"up","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","S","Function unknown","Os06g0119100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA007252",198.7065,400.625,178.7036,438.976,114.5519,574.647,{"v":0.00016972088288455,"d":"1.70E-04"},1.43420710738851,"up","[P]","Inorganic ion transport and metabolism ","Molecular Function: catalase activity (GO:0004096);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: glyoxysome (GO:0009514);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: photorespiration (GO:0009853);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: heme binding (GO:0020037);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: cellular lipid catabolic process (GO:0044242);; Cellular Component: apoplast (GO:0048046);; Molecular Function: cobalt ion binding (GO:0050897);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03781|0|osa:4328073|Os02g0115700; K03781 catalase [EC:1.11.1.6] (A)","Tryptophan metabolism (ko00380);; Glyoxylate and dicarboxylate metabolism (ko00630);; Peroxisome (ko04146)","Catalase isozyme A OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","P","Inorganic ion transport and metabolism","Os02g0115700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005536",3.43691100000016,9.798451209,4.6559582349,11.16836,3.955674,11.7522000004749,0.00288539732239166,1.42723038918393,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: plastid (GO:0009536);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Cellular Component: NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598);; Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (GO:0016655);; Biological Process: cellular cation homeostasis (GO:0030003);; Cellular Component: thylakoid membrane (GO:0042651);; Biological Process: divalent metal ion transport (GO:0070838);; ","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC102702214 [Oryza brachyantha]"]
["gene:BGIOSGA011975",18.0676,36.1963,21.894,56.033,9.6211,50.4548,{"v":0.000541883470678135,"d":"5.42E-04"},1.42656202559048,"up","[S]","Function unknown ","Cellular Component: membrane (GO:0016020);; ","K02221|1.48067e-97|osa:4331815|Os03g0178200; K02221 YggT family protein (A)","--","Uncharacterized protein ycf19 GN=ycf19 OS=Guillardia theta (Cryptomonas phi) PE=3 SV=1","S","Function unknown","hypothetical protein OsI_10244 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022272",11.58638,33.11348,13.86429,43.707,13.96374,43.2467,{"v":6.69529573431835e-05,"d":"6.70E-05"},1.42404534591605,"up","[K]","Transcription ","Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","K","Transcription","homeodomain leucine zipper protein, partial [Oryza sativa Indica Group]"]
["gene:BGIOSGA037257",71.9437,233.7225,140.2933,261.911,63.9894,256.561,{"v":2.58347093582542e-05,"d":"2.58E-05"},1.42266226267521,"up","[C]","Energy production and conversion ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast ribulose bisphosphate carboxylase complex (GO:0009573);; Biological Process: response to blue light (GO:0009637);; Biological Process: photorespiration (GO:0009853);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: response to far red light (GO:0010218);; Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);; Biological Process: reductive pentose-phosphate cycle (GO:0019253);; Cellular Component: cytosolic ribosome (GO:0022626);; Cellular Component: thylakoid lumen (GO:0031977);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; ","K01602|3.45717e-128|osa:4352014|Os12g0291100; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] (A)","Glyoxylate and dicarboxylate metabolism (ko00630);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Ribulose bisphosphate carboxylase small chain A, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","C","Energy production and conversion","Os12g0291100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018498",27.6553,104.109,64.9961,133.435,26.4289,90.4666,0.00200081933241062,1.41184244351282,"up","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast ribulose bisphosphate carboxylase complex (GO:0009573);; Biological Process: response to blue light (GO:0009637);; Biological Process: photorespiration (GO:0009853);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: response to far red light (GO:0010218);; Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);; Biological Process: reductive pentose-phosphate cycle (GO:0019253);; Cellular Component: cytosolic ribosome (GO:0022626);; Cellular Component: thylakoid lumen (GO:0031977);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; ","K01602|5.01188e-113|osa:4351966|Os12g0274700; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] (A)","Glyoxylate and dicarboxylate metabolism (ko00630);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Ribulose bisphosphate carboxylase small chain, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","C","Energy production and conversion","hypothetical protein OsI_19041 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036886",42.9345,231.939,98.9632,212.327,95.7854,274.101,{"v":3.63371832369607e-05,"d":"3.63E-05"},1.41113958549982,"up","--","--","Biological Process: lipid transport (GO:0006869);; Molecular Function: lipid binding (GO:0008289);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to salicylic acid (GO:0009751);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: response to hydrogen peroxide (GO:0042542);; Cellular Component: apoplast (GO:0048046);; ","--","--","Probable non-specific lipid-transfer protein 3 (Precursor) GN=LTP3 OS=Triticum aestivum (Wheat) PE=2 SV=1","S","Function unknown","Nonspecific lipid-transfer protein 3 precursor, putative, expressed [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018363",1.99313286753,6.268267,2.0408222978,6.18952352096,2.97092623956,5.32624718741,0.00173586962046998,1.41007118920137,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_19333 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013503",4.69390742395,15.5275886172,7.80217600000206,12.24398,4.0833504363,14.5079217241,{"v":0.000579338858902539,"d":"5.79E-04"},1.4083335632969,"up","--","--","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; ","K16296|0|obr:102701071|serine carboxypeptidase-like 18-like; K16296 serine carboxypeptidase-like clade I [EC:3.4.16.-] (A)","--","Serine carboxypeptidase-like 18 (Precursor) GN=SCPL18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","E","Amino acid transport and metabolism","hypothetical protein OsI_13387 [Oryza sativa Indica Group]"]
["gene:BGIOSGA035912",1.62977914338196,4.0312181634,1.54391566,3.968966,1.1847286810241,2.6718095,{"v":0.000124008288973524,"d":"1.24E-04"},1.40586378835686,"up","[Z]","Cytoskeleton ","Biological Process: cytokinesis (GO:0000910);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10400|0|osa:4352674|Os12g0590500; K10400 kinesin family member 15 (A)","--","Phragmoplast orienting kinesin 2 GN=POK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Z","Cytoskeleton","hypothetical protein OsI_38942 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012386",2.687545,8.7082200303,4.063436,10.3585133308,3.1878751404,6.349389,0.00214579279646951,1.40523011813342,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","Os03g0288900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018926",3.1119133,11.6235213,4.816127,11.1735258,3.569235,9.0255393,0.00486370366088548,1.40518713580781,"up","--","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: nutrient reservoir activity (GO:0045735);; ","--","--","12S seed storage globulin 2 basic chain (Precursor) OS=Avena sativa (Oat) PE=3 SV=1","--","--","hypothetical protein OsI_18214 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022314",41.8743005203452,64.5817504639,47.5846485328,111.9652778219,25.864263867917,118.5334879513,0.0066378347099217,1.40290641007971,"up","--","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; Cellular Component: apoplast (GO:0048046);; ","--","--","GDSL esterase/lipase APG (Precursor) GN=APG OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os06g0148200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005083",21.52782,66.3422,39.33283,83.64888,19.99102,87.4673,{"v":9.52491261638953e-05,"d":"9.52E-05"},1.39990936854244,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast envelope (GO:0009941);; ","K02899|1.74078e-115|osa:4327257|Os01g0924000; K02899 large subunit ribosomal protein L27 (A)","Ribosome (ko03010)","50S ribosomal protein L27, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_04988 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000940",1.563730537723,6.4108400195766,2.380900113326,4.726380309374,1.91815703687,4.948250100949,0.00340040060031467,1.39973040344106,"up","[R]","General function prediction only ","Cellular Component: endoplasmic reticulum lumen (GO:0005788);; Biological Process: metabolic process (GO:0008152);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","K14664|0|osa:4327677|Os01g0706900; K14664 IAA-amino acid hydrolase [EC:3.5.1.-] (A)","--","IAA-amino acid hydrolase ILR1-like 2 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein OsI_03451 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031777",3.536549,11.50957,4.80426,12.80573,2.336506,7.71332,0.00152971462149183,1.39789019428522,"up","[G]","Carbohydrate transport and metabolism ","--","K01728|0|dosa:Os10t0457200-00|Os10g0457200; Similar to pectate lyase 12.; K01728 pectate lyase [EC:4.2.2.2] (A)","Pentose and glucuronate interconversions (ko00040)","Probable pectate lyase 12 (Precursor) GN=At3g53190 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","hypothetical protein OsI_33884 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004131",7.898682,20.81806,7.62856,27.98441,11.589945,17.5799,{"v":0.000541883470678135,"d":"5.42E-04"},1.3974928531406,"up","[F]","Nucleotide transport and metabolism ","Molecular Function: CTP synthase activity (GO:0003883);; Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K01937|0|osa:4324172|Os01g0654100; K01937 CTP synthase [EC:6.3.4.2] (A)","Pyrimidine metabolism (ko00240)","--","F","Nucleotide transport and metabolism","Os01g0654100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA037844",8.7538800990337,25.272918,12.100457,21.249960942,5.2205420804,17.552235314,{"v":0.000366282892035036,"d":"3.66E-04"},1.39675558444488,"up","--","--","Biological Process: very long-chain fatty acid metabolic process (GO:0000038);; Molecular Function: aminopeptidase activity (GO:0004177);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: proteolysis (GO:0006508);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Molecular Function: metalloexopeptidase activity (GO:0008235);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: oxidation-reduction process (GO:0055114);; Molecular Function: fatty acid alpha-hydroxylase activity (GO:0080132);; ","--","--","Fatty acid 2-hydroxylase 1 GN=FAH1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","Os12g0628400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA036005",15.2609,31.5558,15.604,32.9951,8.66833,51.4261,0.00376065721027172,1.3951154012578,"up","[GC]","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","--","UDP-glycosyltransferase 91C1 GN=UGT91C1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_38729 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004223",3.92407,11.4697197301877,4.640635026,13.0212219440127,3.9110400130024,6.7084117509,0.00759367356690456,1.39321606880769,"up","--","--","Biological Process: nuclear division (GO:0000280);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: spindle (GO:0005819);; Molecular Function: microtubule binding (GO:0008017);; Cellular Component: phragmoplast (GO:0009524);; Cellular Component: preprophase band (GO:0009574);; Biological Process: response to nematode (GO:0009624);; Biological Process: microtubule polymerization (GO:0046785);; Biological Process: formation by symbiont of syncytium involving giant cell for nutrient acquisition from host (GO:0052096);; Cellular Component: cortical microtubule (GO:0055028);; ","K16732|0|osa:4324106|Os01g0685900; K16732 protein regulator of cytokinesis 1 (A)","--","65-kDa microtubule-associated protein 3 GN=K17N15.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","Os01g0685900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA024238",5.915831,17.143168,6.5401413973,21.08754,7.123435,17.02530112573,{"v":0.000584969665524369,"d":"5.85E-04"},1.38852829417684,"up","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","--","UDP-glycosyltransferase 71B7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein OsI_26157 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017552",10.256757208,46.1672615047909,26.6700017554099,52.207030345369,9.454197,49.1750970946813,{"v":5.27280811341275e-05,"d":"5.27E-05"},1.38756491684007,"up","--","--","--","--","--","--","S","Function unknown","Os05g0565701 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002596",38.13531,107.7289,55.40881,106.7670752,23.00822,106.26821,{"v":5.36333306018565e-05,"d":"5.36E-05"},1.38502219238383,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_00040 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031659",6.32316,31.95146,16.77249,37.35409,6.50825,30.25065,{"v":5.42182641509552e-05,"d":"5.42E-05"},1.38076373464132,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","K15402|0|dosa:Os10t0486100-00|Os10g0486100; Cytochrome P450-like protein (CYP86B1).; K15402 fatty acid omega-hydroxylase [EC:1.14.-.-] (A)","Cutin, suberine and wax biosynthesis (ko00073)","Cytochrome P450 86B1 GN=CYP86B1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_34090 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016954",2.14616306003292,8.684964015844,4.2144658767338,6.6470310523,2.728191546,6.89483642548,0.00140109728736724,1.37788006348693,"up","[GEPR]","--","Cellular Component: plant-type vacuole (GO:0000325);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","SPX domain-containing membrane protein Os04g0573000 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","P","Inorganic ion transport and metabolism","OSJNBa0019K04.6 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002756",5.19843,13.10454,6.37686,12.4982,4.15717,14.04981,0.00163034195250239,1.37703964019581,"up","[M]","Cell wall/membrane/envelope biogenesis ","Biological Process: glycolipid biosynthetic process (GO:0009247);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Molecular Function: UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity (GO:0046510);; ","K06119|0|osa:4325452|Os01g0142300; K06119 sulfoquinovosyltransferase [EC:2.4.1.-] (A)","Glycerolipid metabolism (ko00561)","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_00342 [Oryza sativa Indica Group]"]
["gene:BGIOSGA037602",139.645,363.428,218.731,530.948,118.612,463.144,{"v":0.000113928075865029,"d":"1.14E-04"},1.37540689347158,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_38742 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026625",6.89051,22.4307,9.5521,16.1873,5.59588,17.3504,{"v":6.13504840361057e-05,"d":"6.14E-05"},1.36903917602428,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_29965 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022201",2.920157,9.05697941225,3.8536781635,9.963531,2.533515,6.624113887,0.0076525569389198,1.36837889186616,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","--","Protein ASPARTIC PROTEASE IN GUARD CELL 2 (Precursor) GN=ASPG2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os06g0121500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005969",5.74394,14.2869,6.10106,20.3121,5.03416,12.5867,{"v":0.000618099730153956,"d":"6.18E-04"},1.36749227783084,"up","--","--","--","--","--","Uncharacterized protein At1g65710 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_08213 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028874",9.711590351,32.53649,15.881630416,39.83947,7.60965382,24.07966143,0.00437767283990788,1.36444505766341,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_29660 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023171",6.01002,17.55123,7.68383,20.94492,8.08453,14.58325,{"v":0.000711352136788135,"d":"7.11E-04"},1.36306208123703,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","hypothetical protein OsI_23533 [Oryza sativa Indica Group]"]
["gene:BGIOSGA034818",2.66665,6.04693,2.94072,6.02725,1.845146,5.92854,0.00673763169971907,1.36303495972513,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: signal sequence binding (GO:0005048);; Molecular Function: GTP binding (GO:0005525);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614);; Molecular Function: 7S RNA binding (GO:0008312);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: protein import into chloroplast thylakoid membrane (GO:0045038);; Cellular Component: signal recognition particle, chloroplast targeting (GO:0080085);; ","K03106|0|osa:4349809|Os11g0153700; K03106 signal recognition particle subunit SRP54 (A)","Protein export (ko03060)","Signal recognition particle 54 kDa protein, chloroplastic (Precursor) GN=F8F6_150 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein OsI_35151 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015606",5.03801,14.0722,5.93681,11.0419,3.8284,13.3159,0.00323250255819678,1.35398609947086,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","hypothetical protein OsI_14830 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018073",1.415475,5.68353,1.891951,4.18695,2.404032,5.23297,0.00398917934965823,1.34860869912766,"up","[F]","Nucleotide transport and metabolism ","Cellular Component: cell wall (GO:0005618);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","F","Nucleotide transport and metabolism","hypothetical protein OsI_19926 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027603",76.913928,135.52968,62.173563,195.59263,57.80960690744,153.86028,{"v":0.000179780558378173,"d":"1.80E-04"},1.34667640688108,"up","--","--","Molecular Function: fatty-acyl-CoA binding (GO:0000062);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: lipid transport (GO:0006869);; Molecular Function: phosphatidylcholine binding (GO:0031210);; Biological Process: response to freezing (GO:0050826);; ","--","--","Acyl-CoA-binding protein OS=Ricinus communis (Castor bean) PE=3 SV=1","I","Lipid transport and metabolism","Os08g0162800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA032289",5.25041,15.24947,5.95654,13.91575,3.267071,10.99963,{"v":0.000941916342589905,"d":"9.42E-04"},1.34660052580553,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; Biological Process: amino acid transport (GO:0006865);; Biological Process: response to nematode (GO:0009624);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: symporter activity (GO:0015293);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: root cap development (GO:0048829);; ","K13946|0|osa:4348107|Os10g0147400; K13946 auxin influx carrier (AUX1 LAX family) (A)","Plant hormone signal transduction (ko04075)","Auxin transporter-like protein 3 GN=OSJNBb0016M10.2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein OsI_32746 [Oryza sativa Indica Group] "]
["gene:BGIOSGA022049",42.2330591098,108.3550964351,62.2793436993,139.37245,30.6749751096,122.883473,{"v":0.000149072440249162,"d":"1.49E-04"},1.34376679558883,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Protein ASPARTIC PROTEASE IN GUARD CELL 2 (Precursor) GN=ASPG2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_21398 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009022",2.45761419279,7.8342512184,3.556135,6.769444,3.15846860874,7.115081,{"v":0.000831588493613769,"d":"8.32E-04"},1.34366862473945,"up","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: RNA helicase activity (GO:0003724);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: cytoplasmic stress granule (GO:0010494);; Biological Process: plasmodesmata-mediated intercellular transport (GO:0010497);; Biological Process: posttranscriptional gene silencing (GO:0016441);; Biological Process: mRNA modification (GO:0016556);; ","--","--","DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic (Precursor) GN=F20P5.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","L","Replication, recombination and repair","hypothetical protein OsI_08870 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004612",8.30785,22.7,13.44933,24.2154,6.97559,26.593,0.00174483595366378,1.34117559814163,"up","--","--","Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: heat acclimation (GO:0010286);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: photosystem I assembly (GO:0048564);; Biological Process: response to photooxidative stress (GO:0080183);; ","--","--","--","S","Function unknown","Os01g0798500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029255",14.3018990011237,37.5292323,18.460567652,42.14766277,13.618307,47.7336115,{"v":0.000144896890549135,"d":"1.45E-04"},1.33912828644724,"up","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","--","--","E3 ubiquitin-protein ligase RGLG1 GN=RGLG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","hypothetical protein OsI_32420 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025897",60.28962,206.201586369,107.812138,186.9207,71.2078857042,251.263700000207,{"v":0.000268185319938696,"d":"2.68E-04"},1.33409467279467,"up","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: photosystem II oxygen evolving complex (GO:0009654);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: extrinsic component of membrane (GO:0019898);; Cellular Component: apoplast (GO:0048046);; ","K08901|1.9263e-91|osa:4343515|Os07g0544800; K08901 photosystem II oxygen-evolving enhancer protein 3 (A)","Photosynthesis (ko00195)","Oxygen-evolving enhancer protein 3, chloroplastic (Precursor) GN=OJ1582_D10.19 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os07g0544800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA007267",6.3522662282,13.9728200000031,7.7835546,17.755088,7.111827200596,21.724672,{"v":0.000428437235694068,"d":"4.28E-04"},1.3332121565261,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: cell adhesion (GO:0007155);; Cellular Component: endosome membrane (GO:0010008);; Biological Process: meristem initiation (GO:0010014);; Biological Process: xylem development (GO:0010089);; Biological Process: trichome morphogenesis (GO:0010090);; Cellular Component: endomembrane system (GO:0012505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Biological Process: actin nucleation (GO:0045010);; Biological Process: root hair cell differentiation (GO:0048765);; Molecular Function: GTPase binding (GO:0051020);; Biological Process: cell wall organization (GO:0071555);; ","--","--","Receptor-like serine/threonine-protein kinase NCRK (Precursor) GN=NCRK OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_05542 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011754",4.16973814034,11.5008234824,6.6885338373,13.59220422612,4.783918,15.46060743464,{"v":0.000649876251863465,"d":"6.50E-04"},1.33007738156245,"up","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Probable polygalacturonase OS=Vitis vinifera (Grape) PE=1 SV=1","R","General function prediction only","Os03g0124900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA001117",1.153559,7.33061,2.87428743,5.879327,4.571724,8.454649,0.00788151025612354,1.32954399560864,"up","[R]","General function prediction only ","Molecular Function: voltage-gated potassium channel activity (GO:0005249);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: response to salt stress (GO:0009651);; Biological Process: pollen tube growth (GO:0009860);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: regulation of ion transmembrane transport (GO:0034765);; Biological Process: root hair elongation (GO:0048767);; Biological Process: potassium ion transmembrane transport (GO:0071805);; ","--","--","Potassium channel AKT1 GN=AKT1 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_03064 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001879",107.0132,276.4668,110.3781,291.7316,82.3072,211.0131,{"v":0.000428143918082354,"d":"4.28E-04"},1.32929528956351,"up","[Z]","Cytoskeleton ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: microtubule (GO:0005874);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: microtubule-based movement (GO:0007018);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: protein polymerization (GO:0051258);; ","K07375|0|zma:542418|TUBB5, tub5; beta-5 tubulin; K07375 tubulin beta (A)","Phagosome (ko04145)","Tubulin beta-5 chain GN=TUBB5 OS=Zea mays (Maize) PE=1 SV=1","Z","Cytoskeleton","unnamed protein product [Coffea canephora]"]
["Rice_newGene_675",4.28411839529,9.2005624699,3.611187,9.247244,4.917562,11.32559,0.00480793655732432,1.32758272830278,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","L","Replication, recombination and repair","Os08g0459400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023843",1.06394354515325,2.45742775671529,1.08686880294289,3.13370306903531,1.326359871748,2.4474530129317,0.00241551606057687,1.3246066282886,"up","[Z]","Cytoskeleton ","Biological Process: nuclear division (GO:0000280);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: nucleolus organization (GO:0007000);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Biological Process: regulation of G2/M transition of mitotic cell cycle (GO:0010389);; ","K10400|0|obr:102705454|phragmoplast orienting kinesin 1-like; K10400 kinesin family member 15 (A)","--","Phragmoplast orienting kinesin 2 GN=POK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Z","Cytoskeleton","hypothetical protein OsI_27028 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012692",5.925097,16.27762,8.00321,21.02953,7.840811514,28.72266,0.00118693038542591,1.32261770896259,"up","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: plastid (GO:0009536);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","K13083|1.29653e-134|dosa:Os03t0367101-00|Os03g0367101; Similar to cytochrome P450 flavonoid 3',5'-hydroxylase.; K13083 flavonoid 3',5'-hydroxylase [EC:1.14.13.88] (A)","Flavonoid biosynthesis (ko00941);; Flavone and flavonol biosynthesis (ko00944)","Flavonoid 3&apos;,5&apos;-hydroxylase GN=CYP75A7 OS=Eustoma exaltatum subsp. russellianum (Bluebells) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_11712 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020118",11.83714,31.29322,11.51464,24.54301,6.70211,21.87947,0.0012430332303505,1.31513999613336,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|0|osa:4339222|Os05g0499300; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","Peroxidase 1 (Precursor) GN=OJ1057_B02.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","G","Carbohydrate transport and metabolism","Os05g0499300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA031449",4.223762238,14.0674433000005,7.608233511,10.9905350000001,3.740060452,12.8400274553242,0.0019189418889912,1.31482690823061,"up","--","--","Molecular Function: carboxylic ester hydrolase activity (GO:0004091);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","M","Cell wall/membrane/envelope biogenesis","hypothetical protein OsI_34575 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009556",26.2884,64.8048,40.5704,86.7447,22.122,87.2627,{"v":0.000249099410166454,"d":"2.49E-04"},1.31199738749292,"up","--","--","Biological Process: flavonoid biosynthetic process (GO:0009813);; Molecular Function: chalcone isomerase activity (GO:0045430);; ","K01859|2.28558e-156|osa:4334588|Os03g0819600; K01859 chalcone isomerase [EC:5.5.1.6] (A)","Flavonoid biosynthesis (ko00941)","Chalcone--flavonone isomerase GN=OJ1754_E06.14 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","Os03g0819600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA022006",1.785983,7.2641,4.289304,9.94496,3.63285,9.52684,0.00650275370707958,1.31012444885155,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: anther dehiscence (GO:0009901);; Biological Process: fruit dehiscence (GO:0010047);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","NAC domain-containing protein 43 GN=F19D11.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","putative OsNAC7 protein [Oryza sativa Japonica Group] "]
["gene:BGIOSGA006197",2.482295,18.96531,9.54184,13.36619,6.2743,13.87801,0.0091521114144532,1.3084795225756,"up","[H]","Coenzyme transport and metabolism ","Molecular Function: phosphopantothenate--cysteine ligase activity (GO:0004632);; Biological Process: coenzyme A biosynthetic process (GO:0015937);; ","K01922|0|osa:4329749|Os02g0575200; K01922 phosphopantothenate-cysteine ligase [EC:6.3.2.5] (A)","Pantothenate and CoA biosynthesis (ko00770)","Phosphopantothenate--cysteine ligase 1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_07771 [Oryza sativa Indica Group]"]
["gene:BGIOSGA034686",55.234882,260.44074,87.2295438,261.54556163,81.4577001083,245.07961,{"v":0.000168187761726892,"d":"1.68E-04"},1.30567436352054,"up","--","--","Biological Process: lipid transport (GO:0006869);; Molecular Function: lipid binding (GO:0008289);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to salicylic acid (GO:0009751);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: response to hydrogen peroxide (GO:0042542);; Cellular Component: apoplast (GO:0048046);; ","--","--","Probable non-specific lipid-transfer protein 3 (Precursor) GN=LTP3 OS=Triticum aestivum (Wheat) PE=2 SV=1","S","Function unknown","Os11g0116000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026208",5.496916,28.94991,13.78522,24.76897,9.171999,24.12365,{"v":0.000864447062264482,"d":"8.64E-04"},1.3035302745814,"up","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; ","--","--","Transcription factor MYB86 GN=F21E10.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","hypothetical protein OsI_27004 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017102",5.81074,14.9917,5.96053,13.2559,4.37594,15.4044,0.00176340361651821,1.30092936462358,"up","--","--","Molecular Function: polygalacturonase activity (GO:0004650);; Molecular Function: zinc ion transmembrane transporter activity (GO:0005385);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: microsporogenesis (GO:0009556);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: zinc ion transmembrane transport (GO:0071577);; ","--","--","Polygalacturonase QRT3 (Precursor) GN=QRT3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_17366 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003040",31.2543,89.9631,44.7751,107.9142,37.8581,77.024,{"v":0.000188009511271427,"d":"1.88E-04"},1.29298613754637,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Reticulon-like protein B1 GN=F9D16.100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein OsI_00974 [Oryza sativa Indica Group]"]
["gene:BGIOSGA035696",20.1348835656,29.82437,12.879872,43.708103937,9.8586913104,42.6067,{"v":0.00022367244120609,"d":"2.24E-04"},1.28944281661056,"up","--","--","Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: seed coat development (GO:0010214);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: alpha-L-arabinofuranosidase activity (GO:0046556);; Cellular Component: apoplast (GO:0048046);; ","--","--","Beta-D-xylosidase 1 (Precursor) GN=K7J8.3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","Beta-D-xylosidase, putative, expressed [Oryza sativa Japonica Group]"]
["gene:BGIOSGA018546",166.286,454.531,265.768,464.502,128.777,422.467,{"v":0.000961613734078777,"d":"9.62E-04"},1.28924037295166,"up","--","--","--","--","--","--","--","--","--"]
["gene:BGIOSGA029755",3.76859,12.73788,7.26359,18.42667,7.70391,18.70118,0.00466581819847108,1.2881484134936,"up","[MG]","--","Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854);; Biological Process: steroid biosynthetic process (GO:0006694);; Biological Process: response to cold (GO:0009409);; Biological Process: lignin biosynthetic process (GO:0009809);; Molecular Function: cinnamoyl-CoA reductase activity (GO:0016621);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: oxidation-reduction process (GO:0055114);; ","K09753|0|osa:4347074|Os09g0419200; K09753 cinnamoyl-CoA reductase [EC:1.2.1.44] (A)","Phenylpropanoid biosynthesis (ko00940)","Cinnamoyl-CoA reductase 1 GN=T24D18.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_31388 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010321",2.0991831,5.79350793,1.9943751,5.72996100000005,2.894626062319,4.340483402,0.00285061121096818,1.28686444010438,"up","--","--","Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: regulation of G2/M transition of mitotic cell cycle (GO:0010389);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: histone H3-K9 methylation (GO:0051567);; ","--","--","--","S","Function unknown","hypothetical protein OsI_12470 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025369",12.62632394,36.3212282,13.4237777465,34.1387682,13.598491,31.118424705,{"v":0.00025686604890057,"d":"2.57E-04"},1.28398791510909,"up","--","--","--","--","--","--","R","General function prediction only","Os07g0205500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA007410",227.846,649.747,293.827,728.378,173.544,416.819,0.00541429886059451,1.28377836137614,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein folding (GO:0006457);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; ","K01802|6.07609e-113|osa:4328121|Os02g0121300; K01802 peptidylprolyl isomerase [EC:5.2.1.8] (A)","--","Peptidyl-prolyl cis-trans isomerase GN=CYP OS=Zea mays (Maize) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os02g0121300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA032900",16.49972,42.74204,17.63773,33.2245,13.78399,52.69076,{"v":0.000239661771458764,"d":"2.40E-04"},1.28336655771652,"up","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; ","--","--","Glycerol-3-phosphate 2-O-acyltransferase 6 GN=GPAT6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","Os10g0413400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA020728",5.451955,13.06834,8.324326,14.05187,4.394474,16.60732,0.00275645528364804,1.28261032810633,"up","[E]","Amino acid transport and metabolism ","Molecular Function: aminopeptidase activity (GO:0004177);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: N-1-naphthylphthalamic acid binding (GO:0010013);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: single-organism transport (GO:0044765);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: intracellular transport (GO:0046907);; Biological Process: organic substance transport (GO:0071702);; ","K01262|1.51545e-147|obr:102702141|probable Xaa-Pro aminopeptidase P-like; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] (A)","--","Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic (Precursor) GN=MRA19.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","E","Amino acid transport and metabolism","putative Xaa-Pro aminopeptidase 2 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA020593",12.38427,48.7882,25.3818,82.924,11.96666,60.3728,{"v":0.000579338858902539,"d":"5.79E-04"},1.27829621566798,"up","--","--","Biological Process: syncytium formation (GO:0006949);; Biological Process: inflammatory response (GO:0006954);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to other organism (GO:0051707);; ","--","--","--","V","Defense mechanisms","hypothetical protein OsI_24345 [Oryza sativa Indica Group]"]
["gene:BGIOSGA034431",21.5225,30.7417,18.6719,47.2049,10.724,56.0719,0.00988464482107909,1.27629090259508,"up","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: amino acid transmembrane transport (GO:0003333);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: lateral root formation (GO:0010311);; Molecular Function: auxin influx transmembrane transporter activity (GO:0010328);; Biological Process: response to cyclopentenone (GO:0010583);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Molecular Function: symporter activity (GO:0015293);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: root hair elongation (GO:0048767);; Biological Process: root cap development (GO:0048829);; Biological Process: auxin influx (GO:0060919);; Biological Process: cell wall organization (GO:0071555);; ","K13946|0|osa:4349885|Os11g0169200; K13946 auxin influx carrier (AUX1 LAX family) (A)","Plant hormone signal transduction (ko04075)","Putative auxin transporter-like protein 4 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","P","Inorganic ion transport and metabolism","Os11g0169200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011921",16.0118,36.3328,16.3515,31.2504,13.9454,53.0189,0.00564092617731762,1.27471160233164,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","K15397|0|obr:102717419|3-ketoacyl-CoA synthase 19-like; K15397 3-ketoacyl-CoA synthase [EC:2.3.1.199] (A)","Fatty acid elongation (ko00062)","3-ketoacyl-CoA synthase 11 GN=KCS11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","hypothetical protein OsI_10129 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010344",3.42908759457,9.0662214782,4.153140384,10.6789160727368,3.602089657,6.1786879019478,0.00178825884287183,1.269287685133,"up","[Z]","Cytoskeleton ","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: DNA replication initiation (GO:0006270);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: DNA methylation (GO:0006306);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Biological Process: cell proliferation (GO:0008283);; Cellular Component: plastid (GO:0009536);; Biological Process: xylem development (GO:0010089);; Biological Process: RNA interference (GO:0016246);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Biological Process: histone H3-K9 methylation (GO:0051567);; Biological Process: regulation of cell cycle (GO:0051726);; ","K10400|0|osa:4333349|Os03g0587200; K10400 kinesin family member 15 (A)","--","Kinesin-like protein KIN12A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","Os03g0587200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013758",7.61878,41.1488,22.7795,56.1913,21.9291,47.756,{"v":0.000775552115443,"d":"7.76E-04"},1.26886419196049,"up","--","--","Biological Process: proteolysis (GO:0006508);; Biological Process: lipid transport (GO:0006869);; Molecular Function: peptidase activity (GO:0008233);; Molecular Function: lipid binding (GO:0008289);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Protein YLS3 (Precursor) GN=YLS3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","putative protease inhibitor [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004403",17.273395,60.01758,30.78033,65.07694,21.03975748,50.06914,{"v":0.000257577529243712,"d":"2.58E-04"},1.26758691069593,"up","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: response to cold (GO:0009409);; Biological Process: response to salt stress (GO:0009651);; Molecular Function: nutrient reservoir activity (GO:0045735);; ","--","--","BURP domain-containing protein 3 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_03637 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005064",3.6621292,8.089948,5.14411,7.89624,1.89783,8.31056,0.007265033958071,1.26748990777375,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: plastid (GO:0009536);; Biological Process: rRNA methylation (GO:0031167);; ","--","--","--","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_04960 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004877",9.47727,26.5933,16.5468,30.8234,7.60501,29.3789,{"v":0.000450779374479462,"d":"4.51E-04"},1.2672069376823,"up","--","--","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: cell wall (GO:0005618);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: negative regulation of catalytic activity (GO:0043086);; ","--","--","Subtilisin-like protease (Precursor) GN=At5g67360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_04579 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026961",20.8055,47.9825,22.7207,56.3054,19.2762,64.5748,{"v":0.00025686604890057,"d":"2.57E-04"},1.26672774071538,"up","--","--","Cellular Component: ubiquitin ligase complex (GO:0000151);; Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","U-box domain-containing protein 41 GN=PUB41 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_29281 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000079",3.92455161,12.161686922,7.3285786053,14.18238132,4.9470749915,11.8015615036,0.00829193923965882,1.26583608376409,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","Molecular Function: GTP binding (GO:0005525);; Cellular Component: signal recognition particle, endoplasmic reticulum targeting (GO:0005786);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: rRNA processing (GO:0006364);; Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614);; Cellular Component: chloroplast thylakoid (GO:0009534);; Biological Process: photosynthetic electron transport in photosystem II (GO:0009772);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: production of ta-siRNAs involved in RNA interference (GO:0010267);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: production of miRNAs involved in gene silencing by miRNA (GO:0035196);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: protein import into chloroplast thylakoid membrane (GO:0045038);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: cell division (GO:0051301);; Biological Process: defense response to virus (GO:0051607);; ","K03110|0|dosa:Os01t0958100-01|Os01g0958100; Similar to chloroplast SRP receptor cpFtsY precursor.; K03110 fused signal recognition particle receptor (A)","Protein export (ko03060)","Cell division protein FtsY homolog, chloroplastic (Precursor) GN=F4I18.25 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","putative chloroplast SRP receptor cpFtsY precursor [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004601",1.9408067544,4.19652,2.275534,4.309485,2.227488,6.27461,0.00877990742588519,1.26409761936809,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: cell wall (GO:0005618);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: negative regulation of catalytic activity (GO:0043086);; ","--","--","Subtilisin-like protease SBT3.5 {ECO:0000303|PubMed:16193095} (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_04059 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016536",3.5864,18.0305,8.99711,15.0155,5.79579,12.3877,0.00754077520714234,1.26262334564362,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: aldose 1-epimerase activity (GO:0004034);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: hexose metabolic process (GO:0019318);; Molecular Function: carbohydrate binding (GO:0030246);; ","K01785|1.42987e-176|dosa:Os04t0458300-01|Os04g0458300; Similar to OSIGBa0097P08.2 protein.; K01785 aldose 1-epimerase [EC:5.1.3.3] (A)","Glycolysis / Gluconeogenesis (ko00010);; Galactose metabolism (ko00052)","--","G","Carbohydrate transport and metabolism","hypothetical protein OsI_16152 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022681",31.5088,116.8015,46.4804,103.6708,38.8859,64.9441,0.00687278261196865,1.25886520551159,"up","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: RNA methylation (GO:0001510);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: nucleolus (GO:0005730);; Biological Process: nucleotide biosynthetic process (GO:0009165);; Biological Process: regulation of flower development (GO:0009909);; Cellular Component: ribonucleoprotein complex (GO:0030529);; Biological Process: histone lysine methylation (GO:0034968);; ","K11129|7.33673e-103|osa:4340741|Os06g0274200; K11129 H/ACA ribonucleoprotein complex subunit 2 (A)","Ribosome biogenesis in eukaryotes (ko03008)","H/ACA ribonucleoprotein complex subunit 2-like protein GN=At5g08180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","Os06g0274200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018867",34.7890600274313,84.6422446669,51.243914157,74.7032100452626,22.411835,86.4665565031,{"v":0.000487808861898501,"d":"4.88E-04"},1.25557592537506,"up","[I]","Lipid transport and metabolism ","Biological Process: long-chain fatty acid metabolic process (GO:0001676);; Molecular Function: long-chain fatty acid-CoA ligase activity (GO:0004467);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: wax biosynthetic process (GO:0010025);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: cutin biosynthetic process (GO:0010143);; Molecular Function: very long-chain fatty acid-CoA ligase activity (GO:0031957);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; ","K01897|0|osa:4337714|Os05g0132100; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] (A)","Fatty acid biosynthesis (ko00061);; Fatty acid degradation (ko00071);; Fatty acid metabolism (ko01212);; Peroxisome (ko04146)","Long chain acyl-CoA synthetase 1 GN=T8I13.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein OsI_18335 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022321",3.960745,9.813679,5.95552000000013,14.19858,4.554390116112,12.30612,0.00390277323871919,1.25351714814965,"up","[IR]","--","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; Cellular Component: apoplast (GO:0048046);; ","--","--","GDSL esterase/lipase APG (Precursor) GN=APG OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_21681 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012859",3.65939,9.538152,6.340456,9.17672,1.502998,9.470514,0.00492264973444797,1.24804156311803,"up","--","--","Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt, oxidative branch (GO:0009051);; Molecular Function: NADP binding (GO:0050661);; ","K00036|0|osa:4333103|Os03g0412800; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] (A)","Pentose phosphate pathway (ko00030);; Glutathione metabolism (ko00480);; Carbon metabolism (ko01200)","Glucose-6-phosphate 1-dehydrogenase, chloroplastic (Precursor) OS=Solanum tuberosum (Potato) PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_12025 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005830",66.4275,149.883,74.5122,248.889,60.2581,159.894,0.00102016704006891,1.24457070913507,"up","[B]","Chromatin structure and dynamics ","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: vacuole (GO:0005773);; Biological Process: nucleosome assembly (GO:0006334);; Cellular Component: thylakoid (GO:0009579);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K14838|8.9079e-51|zma:100282268|pco082380(357); LOC100282268; K11254 histone H4 (A)","--","Histone H4 OS=Glycine max (Soybean) PE=3 SV=1","B","Chromatin structure and dynamics","hypothetical protein ZEAMMB73_313798 [Zea mays]"]
["gene:BGIOSGA021801",34.45033,50.2615,32.20989,58.2474,15.07299,78.5306,0.00894028065808516,1.23474851880662,"up","--","--","Molecular Function: beta-glucuronidase activity (GO:0004566);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Heparanase-like protein 3 (Precursor) GN=At5g34940 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","hypothetical protein OsI_21892 [Oryza sativa Indica Group] "]
["gene:BGIOSGA020338",10.0738,25.3837,11.0057,27.1656,10.5559,18.1613,{"v":0.000906951251836674,"d":"9.07E-04"},1.23422647448266,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein folding (GO:0006457);; Cellular Component: anchored component of plasma membrane (GO:0046658);; Molecular Function: unfolded protein binding (GO:0051082);; ","K09494|0|sita:101777871|T-complex protein 1 subunit beta-like; K09494 T-complex protein 1 subunit beta (A)","--","T-complex protein 1 subunit beta {ECO:0000303|PubMed:11599560} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_20931 [Oryza sativa Indica Group] "]
["gene:BGIOSGA021399",4.28201,13.89328,11.00752,19.30865,9.05644,21.84814,0.0073516272658096,1.2312667350566,"up","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: negative regulation of long-day photoperiodism, flowering (GO:0048579);; ","--","--","Zinc finger protein CONSTANS-LIKE 9 GN=COL9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_22637 [Oryza sativa Indica Group] "]
["gene:BGIOSGA030981",13.23088,99.48317,26.65648,74.952762,38.52503,74.84474,{"v":0.000460835421014566,"d":"4.61E-04"},1.22545008451523,"up","--","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: transport (GO:0006810);; Cellular Component: plastid (GO:0009536);; ","--","--","Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 GN=SFH6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein OsI_31788 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031500",9.15239,27.6288900000004,19.1512400000031,25.568130000005,2.799751,22.029657,0.002351193875869,1.22495625773632,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","Probable serine/threonine-protein kinase At1g01540 GN=At1g01540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","hypothetical protein OsI_34451 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014294",5.36286,10.7287,5.71591,12.1568,4.00866,10.5348,0.00166004728421531,1.22213700602263,"up","[Z]","Cytoskeleton ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: spindle microtubule (GO:0005876);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: minus-end-directed microtubule motor activity (GO:0008569);; Cellular Component: phragmoplast (GO:0009524);; Cellular Component: plastid (GO:0009536);; Biological Process: anastral spindle assembly involved in male meiosis (GO:0009971);; Molecular Function: ATPase activity (GO:0016887);; ","K10405|0|osa:4337093|Os04g0629700; K10405 kinesin family member C1 (A)","--","Kinesin-5 GN=ATK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Z","Cytoskeleton","Os04g0629700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002717",17.6703,37.69,14.9234,44.7904,14.2083,35.6355,{"v":0.000505898325582682,"d":"5.06E-04"},1.21666801545577,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Cellular Component: plastid (GO:0009536);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor) GN=At1g68400 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_00275 [Oryza sativa Indica Group]"]
["gene:BGIOSGA031292",17.81394,30.17332,18.91394,50.62969,11.1361,41.7718,0.00194226575789503,1.21456645785742,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Biological Process: mitochondrial genome maintenance (GO:0000002);; Biological Process: DNA replication (GO:0006260);; Biological Process: DNA repair (GO:0006281);; Biological Process: DNA recombination (GO:0006310);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cell cycle (GO:0007049);; Biological Process: gene silencing (GO:0016458);; Biological Process: histone modification (GO:0016570);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: macromolecule methylation (GO:0043414);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: fatty-acyl-CoA reductase (alcohol-forming) activity (GO:0080019);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K13356|0|osa:4347887|Os09g0567500; K13356 fatty acyl-CoA reductase [EC:1.2.1.-] (A)","Cutin, suberine and wax biosynthesis (ko00073);; Peroxisome (ko04146)","Probable fatty acyl-CoA reductase 4 GN=FAR4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","putative fatty acyl coA reductase [Oryza sativa Japonica Group] "]
["gene:BGIOSGA008374",70.4211,137.7071,101.3241,220.2278,68.5911,170.2912,{"v":0.000521536917262237,"d":"5.22E-04"},1.21455992412382,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: protein binding (GO:0005515);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Cellular Component: apoplast (GO:0048046);; Molecular Function: peroxiredoxin activity (GO:0051920);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03386|1.06063e-144|osa:4329578|Os02g0537700; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] (A)","--","2-Cys peroxiredoxin BAS1, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_07554 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000913",10.400773906,23.8880277654,14.7152502125,23.940442945,7.9268137388,24.855138111,{"v":0.000622686992907461,"d":"6.23E-04"},1.21452781879437,"up","--","--","--","--","--","Protein IQ-DOMAIN 31 GN=IQD31 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os01g0716200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012185",5.0450607496,10.215951,5.428304,9.833696,3.7398871073,12.55453,0.00338678122250927,1.20912682895112,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_10651 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001496",10.247165133,31.093192566,12.16585,21.53958367,10.543491105,22.23936889,0.00134838494166783,1.20832821307611,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022} GN=At5g23430 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","D","Cell cycle control, cell division, chromosome partitioning","hypothetical protein OsI_02272 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015549",10.44317,31.5494,14.497556,24.11855,15.23503,34.50881,{"v":0.000638058984807121,"d":"6.38E-04"},1.20776541872731,"up","--","--","Biological Process: ion transport (GO:0006811);; Biological Process: xylan metabolic process (GO:0045491);; Biological Process: response to stimulus (GO:0050896);; ","--","--","Protein WAVE-DAMPENED 2 GN=WVD2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Os11g0592600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA027687",18.96019877093,44.489787054,28.6516443916,44.5471153393,8.291197143,44.7888409003,{"v":0.000908013430019856,"d":"9.08E-04"},1.2075056190479,"up","--","--","Biological Process: rRNA processing (GO:0006364);; Biological Process: tRNA metabolic process (GO:0006399);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: protein targeting to chloroplast (GO:0045036);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: chloroplast RNA modification (GO:1900865);; ","--","--","DAG protein, chloroplastic (Precursor) GN=DAG OS=Antirrhinum majus (Garden snapdragon) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_27756 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009398",44.9776,101.5325,65.5053,122.1914,32.388,133.3041,{"v":0.000724169841558526,"d":"7.24E-04"},1.20554792791958,"up","--","--","Cellular Component: extracellular region (GO:0005576);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","GDSL esterase/lipase At1g20120 (Precursor) GN=At1g20120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","I","Lipid transport and metabolism","Os03g0859100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA028580",12.717203,35.95873,15.703942264,30.02851,11.1543252,28.245279,{"v":0.000739341937038478,"d":"7.39E-04"},1.2027521149834,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","BURP domain-containing protein 12 (Precursor) GN=P0709D11.28 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_29064 [Oryza sativa Indica Group]"]
["Rice_newGene_3142",6.55971,17.244,7.06554,15.5945,4.63894,11.7737,0.00126631670844114,1.20232156078971,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Beta-D-xylosidase 4 (Precursor) GN=BXL4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os01g0296700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012640",8.0733,23.18506,10.31025,21.28986,5.46193,16.46041,0.00175789505625983,1.2021853637066,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_11604 [Oryza sativa Indica Group]"]
["gene:BGIOSGA040274",100.58,284.461,178.199,295.553,92.7264,302.087,{"v":0.000712623469177821,"d":"7.13E-04"},1.20207232210973,"up","[C]","Energy production and conversion ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast ribulose bisphosphate carboxylase complex (GO:0009573);; Biological Process: response to blue light (GO:0009637);; Biological Process: photorespiration (GO:0009853);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: response to far red light (GO:0010218);; Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);; Biological Process: reductive pentose-phosphate cycle (GO:0019253);; Cellular Component: cytosolic ribosome (GO:0022626);; Cellular Component: thylakoid lumen (GO:0031977);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; ","K01602|6.35813e-81|obr:102699550|ribulose bisphosphate carboxylase small chain, chloroplastic-like; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] (A)","Glyoxylate and dicarboxylate metabolism (ko00630);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Ribulose bisphosphate carboxylase small chain A, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","C","Energy production and conversion","PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic-like [Oryza brachyantha]"]
["gene:BGIOSGA015731",13.69917,22.05898,15.60051,31.82682,12.861016,36.77567,0.0049373189937994,1.19867660398888,"up","--","--","Biological Process: maltose metabolic process (GO:0000023);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: ncRNA metabolic process (GO:0034660);; ","--","--","--","S","Function unknown","B0616E02-H0507E05.5 [Oryza sativa Indica Group] "]
["gene:BGIOSGA016548",21.8657,52.6676,39.1803,73.6945,21.3838,74.2959,0.00454975897177769,1.19830988422035,"up","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; ","--","--","30S ribosomal protein 3, chloroplastic (Precursor) GN=PSRP3 OS=Hordeum vulgare (Barley) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Os04g0461100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA014241",6.60733300236784,16.903018,9.0152165019412,18.37013463063,7.85733250000006,17.705290310414,0.00198598342806017,1.19439430623135,"up","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: plant-type vacuole (GO:0000325);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glucose catabolic process (GO:0006007);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: Golgi organization (GO:0007030);; Biological Process: vacuole organization (GO:0007033);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Biological Process: ATP hydrolysis coupled proton transport (GO:0015991);; Molecular Function: transferase activity (GO:0016740);; Cellular Component: glutamyl-tRNA(Gln) amidotransferase complex (GO:0030956);; Biological Process: mitochondrial translation (GO:0032543);; Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961);; Molecular Function: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (GO:0050567);; Biological Process: glutaminyl-tRNAGln biosynthesis via transamidation (GO:0070681);; ","K02433|0|obr:102704511|glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] (A)","Aminoacyl-tRNA biosynthesis (ko00970)","Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor) OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Short=Glu-AdT subunit A; Flags: Precursor [Oryza sativa Indica Group] "]
["gene:BGIOSGA029476",12.424630227,31.770164029,16.78745,32.47088109,12.572068144,32.046765733,{"v":0.000722366668764099,"d":"7.22E-04"},1.19429587957869,"up","--","--","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: cell wall (GO:0005618);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","Probable inactive purple acid phosphatase 27 (Precursor) GN=PAP27 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_31957 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006259",5.383260482322,13.6831330316,6.19015874183,14.715696,5.79905335582,12.1344626018,0.00381877857958259,1.18927639989961,"up","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: tRNA modification (GO:0006400);; Biological Process: protein targeting to mitochondrion (GO:0006626);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; Biological Process: 2-methylguanosine metabolic process (GO:0080180);; ","K15430|0|dosa:Os02t0556400-01|Os02g0556400; tRNA guanosine-2'-O-methyltransferase, TRM11 domain containing protein.; K15430 tRNA (guanine10-N2)-methyltransferase [EC:2.1.1.214] (A)","--","--","L","Replication, recombination and repair","hypothetical protein OsI_07651 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002554",7.96681854522,21.4741175392918,10.2173597176203,20.2745995460285,10.5349068330016,22.6406513835,0.00253826674654574,1.18724570750027,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773);; ","--","--","Adenosine kinase GN=ADK OS=Physcomitrella patens subsp. patens (Moss) PE=2 SV=1","F","Nucleotide transport and metabolism","hypothetical protein OsI_00049 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026538",16.70751,47.2812,25.0512,42.0533,12.93517,36.8117,0.00139761892295164,1.18634232197459,"up","[R]","General function prediction only ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","T","Signal transduction mechanisms","Os08g0546700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA020335",16.33627,27.268,15.00451,39.4418,16.69605,49.878,0.00745089599472316,1.17649950637007,"up","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Cytochrome b561 and DOMON domain-containing protein At3g61750 (Precursor) GN=At3g61750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","Os05g0556400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002574",78.1606,184.049,100.163,242.377,77.1096,165.985,{"v":0.000919846572306272,"d":"9.20E-04"},1.1745098483503,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: small ribosomal subunit (GO:0015935);; ","K02989|7.92406e-147|osa:4326457|Os01g0100700; K02989 small subunit ribosomal protein S5e (A)","Ribosome (ko03010)","40S ribosomal protein S5 (Fragment) GN=RPS5 OS=Cicer arietinum (Chickpea) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Os01g0100700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023905",5.06832,13.4761,6.4933,12.2765,4.14291,8.76317,0.00997390700053436,1.17127508414701,"up","[IQ]","--","Molecular Function: 3-oxoacyl-[acyl-carrier-protein] synthase activity (GO:0004315);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: chloroplast (GO:0009507);; ","K09458|0|osa:4343906|Os07g0616200; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] (A)","Fatty acid biosynthesis (ko00061);; Biotin metabolism (ko00780);; Fatty acid metabolism (ko01212)","3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_26869 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001054",123.902,271.524,113.23,248.975,84.3345,265.626,0.00135214428867845,1.16374896179973,"up","--","--","Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","Fasciclin-like arabinogalactan protein 11 (Precursor) GN=FLA11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","Os01g0668100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002969",27.3771,56.7082,32.006,79.0181,23.49328,63.4204,0.0010785366870095,1.16290896437356,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Peroxidase P7 OS=Brassica rapa subsp. rapa (Turnip) PE=1 SV=3","R","General function prediction only","hypothetical protein OsI_00829 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030883",25.70977,50.922,22.22074,52.0118,16.48516,46.1773,0.00207461779871668,1.16270115985292,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell wall macromolecule catabolic process (GO:0016998);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","LysM domain-containing GPI-anchored protein 1 (Precursor) GN=LYM1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_31607 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019009",1.38562151,2.96631313589032,1.06897922877,2.78816984000707,1.55963938694517,2.68007015283357,0.00990413741726,1.1623379330632,"up","[F]","Nucleotide transport and metabolism ","Molecular Function: phosphoribosylformylglycinamidine synthase activity (GO:0004642);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: 'de novo' IMP biosynthetic process (GO:0006189);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: transferase activity (GO:0016740);; Biological Process: microgametogenesis (GO:0055046);; ","K01952|0|dosa:Os05t0104650-00|Os05g0104650; Similar to Formylglycinamide ribonucleotide amidotransferase (Fragment).; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] (A)","Purine metabolism (ko00230)","Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (Precursor) GN=At1g74260 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","R","General function prediction only","hypothetical protein OsI_18107 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032283",113.782,169.732,97.2822,242.838,77.1505,256.344,0.00101347459763563,1.1615135895499,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Proline-rich protein 2 (Precursor) GN=PRP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_32756 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023421",1.8962240325314,7.3584,3.4751,7.16006,4.02467,6.92203,0.00772131133357155,1.1598999850184,"up","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: Golgi transport complex (GO:0017119);; ","--","--","Vacuolar-sorting receptor 6 (Precursor) GN=F17F8.23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein OsI_24020 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022002",29.72895,65.54661242,40.15237,71.166758,20.546767,86.00486834,0.00122497631958828,1.15353932221585,"up","--","--","Biological Process: cell communication (GO:0007154);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: single organism signaling (GO:0044700);; Cellular Component: plant extracellular matrix (GO:0048196);; Biological Process: biological regulation (GO:0065007);; ","--","--","--","R","General function prediction only","unknown [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000404",5.4297271,15.06806,9.17993,16.99468,6.95631,19.47734,0.00550250903528505,1.14952815651722,"up","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Biological Process: metabolic process (GO:0008152);; Molecular Function: 5'-3' exonuclease activity (GO:0008409);; Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","hypothetical protein OsI_04629 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019255",9.12837,20.9647,8.08766,19.2772,8.12672,17.1793,0.00135214428867845,1.14747907595823,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor) GN=GSO1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_18626 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023820",52.47134,111.67469,63.4342,137.3984,49.22568,111.8336,0.00129149748388085,1.14370974721789,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","Uncharacterized GPI-anchored protein At3g06035 (Precursor) GN=At3g06035 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_27083 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011507",69.7719,137.227,80.8848,201.6931,50.6889,136.0552,0.00167049695502535,1.14235438764307,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: transferase activity (GO:0016740);; ","--","--","Glutathione S-transferase PARB GN=PARB OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_09885 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013978",5.87935,11.961,6.78274,13.1699,4.06349,13.4015,0.00630716255611384,1.13475612285178,"up","--","--","Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; Cellular Component: chloroplast (GO:0009507);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: protein targeting to chloroplast (GO:0045036);; ","--","--","Pentatricopeptide repeat-containing protein At5g46580, chloroplastic (Precursor) GN=At5g46580 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_14394 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014643",4.26539,9.34637,4.9619,11.0824,7.52484,14.3758,0.00999392982395993,1.12786553915759,"up","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: DNA-templated transcription, elongation (GO:0006354);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translational elongation (GO:0006414);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Cellular Component: apoplast (GO:0048046);; Biological Process: ovule development (GO:0048481);; ","K02355|0|obr:102717429|elongation factor G, chloroplastic-like; K02355 elongation factor G (A)","--","Elongation factor G-2, chloroplastic (Precursor) GN=fusA2 OS=Glycine max (Soybean) PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_16800 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032222",5.333044209,11.458378001,6.733753426,10.10633467021,5.413783163,12.74933468,0.00541343136944447,1.12624529830915,"up","--","--","Cellular Component: plastid (GO:0009536);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: mRNA modification (GO:0016556);; Molecular Function: transferase activity (GO:0016740);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: ncRNA metabolic process (GO:0034660);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: mRNA stabilization (GO:0048255);; ","--","--","Pentatricopeptide repeat-containing protein MRL1, chloroplastic (Precursor) GN=T11I11.70/T11I11.60 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","hypothetical protein OsI_32907 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013285",20.3381,56.6562,22.8153,55.2615,18.63329,35.2296,0.00957003134029998,1.1194412952398,"up","--","--","--","--","--","Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","D","Cell cycle control, cell division, chromosome partitioning","Os03g0668900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004154",24.8045,57.4055,28.2094,63.8407,32.9875,76.3714,0.00175931589919937,1.11510529430496,"up","[G]","Carbohydrate transport and metabolism ","Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: seed germination (GO:0009845);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: meristem initiation (GO:0010014);; Biological Process: regulation of meristem growth (GO:0010075);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: mannan endo-1,4-beta-mannosidase activity (GO:0016985);; Cellular Component: cell periphery (GO:0071944);; ","--","--","Mannan endo-1,4-beta-mannosidase 1 (Precursor) GN=P0671D01.40 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","R","General function prediction only","hypothetical protein OsI_03157 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006754",1.486212,3.419725,1.828794,3.377658,1.798125,4.306271,0.00633898815205136,1.11501237878801,"up","[R]","General function prediction only ","Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: mRNA modification (GO:0016556);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; ","K03255|0|obr:102701145|clustered mitochondria protein-like; K03255 protein TIF31 (A)","--","Clustered mitochondria protein GN=F4F15.250 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_06619 [Oryza sativa Indica Group]"]
["gene:BGIOSGA038222",14.3857456200301,39.305645526,23.063108312073,49.77271343,18.48302891008,50.04449,0.00990663866318483,1.11497714341966,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: plastid chromosome (GO:0009508);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Cellular Component: chloroplast photosystem I (GO:0030093);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; ","--","--","Protein CURVATURE THYLAKOID 1B, chloroplastic (Precursor) GN=F19D11.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","Os07g0469100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019432",118.5925,271.1294,152.1017,294.3513,114.3698,288.4338,0.00376762142998645,1.11437576417852,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","K14484|6.39761e-133|dosa:Os05t0230700-01|Os05g0230700; Similar to Auxin-responsive protein IAA17.; K14484 auxin-responsive protein IAA (A)","Plant hormone signal transduction (ko04075)","Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","RecName: Full=Auxin-responsive protein IAA17; AltName: Full=Indoleacetic acid-induced protein 17 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA035498",26.7346,80.7245,37.73805,91.851,33.66421,60.8291,0.00203495717037871,1.11095426946982,"up","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: pseudouridine synthesis (GO:0001522);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: box H/ACA snoRNP complex (GO:0031429);; Biological Process: ribosome biogenesis (GO:0042254);; ","K11128|3.19722e-70|osa:4350782|Os11g0579800; K11128 H/ACA ribonucleoprotein complex subunit 1 (A)","Ribosome biogenesis in eukaryotes (ko03008)","Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 GN=At3g03920 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_36586 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025153",39.1416,151.265,70.7709,141.7354,69.6791,123.7493,0.00456207289178717,1.11086098247805,"up","--","--","Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: divalent metal ion transport (GO:0070838);; ","K02698|1.09722e-90|osa:4342404|Os07g0148900; K02698 photosystem I subunit X (A)","Photosynthesis (ko00195)","Photosystem I reaction center subunit psaK, chloroplastic (Precursor) GN=PSAK OS=Hordeum vulgare (Barley) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_24900 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001902",15.95264,44.1503,18.97062,42.3737,20.97043,29.0057,0.0094039268919572,1.10498353208314,"up","--","--","Cellular Component: mitochondrial outer membrane translocase complex (GO:0005742);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: transmembrane transport (GO:0055085);; ","K11518|0|osa:4324258|Os01g0276200; K11518 mitochondrial import receptor subunit TOM40 (A)","--","Mitochondrial import receptor subunit TOM40-1, N-terminally processed GN=TOM40-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3","U","Intracellular trafficking, secretion, and vesicular transport","mitochondrial import receptor subunit tom40 -like [Oryza sativa Japonica Group]"]
["gene:BGIOSGA024829",15.143794517,36.496603329,17.37334126,27.2089768272,10.978044,23.960564886,0.00222823069921575,1.09896396477704,"up","[S]","Function unknown ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: abscisic acid-activated signaling pathway involved in stomatal movement (GO:1901527);; Biological Process: hydrogen peroxide mediated signaling pathway involved in stomatal movement (GO:1901528);; Biological Process: positive regulation of anion channel activity (GO:1901529);; ","--","--","Probable LRR receptor-like serine/threonine-protein kinase At4g20940 GN=At4g20940 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_24881 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018106",6.24549,16.7454,9.50361,15.6457,5.89501,16.3561,0.00855935026977199,1.09780535628963,"up","--","--","Cellular Component: vacuole (GO:0005773);; ","--","--","Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A heavy chain OS=Prunus dulcis (Almond) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_19859 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003833",42.1682,115.3324,63.0259,109.0362,24.61156,81.5791,0.00863672769291982,1.0969173822098,"up","[R]","General function prediction only ","Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05933|2.52083e-125|dosa:Os01t0580500-01|Os01g0580500; Similar to 1-aminocyclopropane-1-carboxylate oxidase 1.; K05933 aminocyclopropanecarboxylate oxidase [EC:1.14.17.4] (A)","Cysteine and methionine metabolism (ko00270)","1-aminocyclopropane-1-carboxylate oxidase 1 GN=ACO1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_02564 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036556",6.38361,13.72529,7.43731,14.74627,6.25557,17.20435,0.00460328369574246,1.09489397456432,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884);; ","--","--","Fatty acid amide hydrolase GN=FAAH OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein OsI_37616 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017984",10.5397,28.4407,11.8627,19.2705,8.31648,21.2367,0.00463950793608644,1.0934389120166,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","Probable serine/threonine-protein kinase At1g01540 GN=At1g01540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","hypothetical protein OsI_20093 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002810",119.3,267.039,120.672,329.531,103.511,199.23,0.00235590408959637,1.09305218565667,"up","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleolus (GO:0005730);; Biological Process: nucleosome assembly (GO:0006334);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11252|2.41408e-49|bdi:100837970|histone H2B.1-like; K11252 histone H2B (A)","--","Histone H2B.4 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","B","Chromatin structure and dynamics","predicted protein [Hordeum vulgare subsp. vulgare]"]
["gene:BGIOSGA026493",7.2891,14.11379,7.09398,16.56117,6.04587549428,11.66952,0.00245479290651161,1.09272340672996,"up","[Z]","Cytoskeleton ","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: DNA replication initiation (GO:0006270);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: DNA methylation (GO:0006306);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: microtubule-based movement (GO:0007018);; Biological Process: mitotic nuclear division (GO:0007067);; Biological Process: synapsis (GO:0007129);; Biological Process: reciprocal meiotic recombination (GO:0007131);; Molecular Function: microtubule binding (GO:0008017);; Biological Process: cell proliferation (GO:0008283);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of cell cycle process (GO:0010564);; Biological Process: histone H3-K9 methylation (GO:0051567);; ","K10398|0|obr:102707515|125 kDa kinesin-related protein-like; K10398 kinesin family member 11 (A)","--","125 kDa kinesin-related protein GN=TKRP125 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","Z","Cytoskeleton","hypothetical protein OsI_30256 [Oryza sativa Indica Group]"]
["gene:BGIOSGA024092",22.98515,41.60911,24.50658,49.1297,13.52355,52.5839,0.00235591074536269,1.09177605547126,"up","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_26470 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026721",11.71638,36.14972,15.57566,33.504,18.7716,32.76695,0.00340040060031467,1.08362013549714,"up","[E]","Amino acid transport and metabolism ","Molecular Function: serine-pyruvate transaminase activity (GO:0004760);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: water transport (GO:0006833);; Molecular Function: alanine-glyoxylate transaminase activity (GO:0008453);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to fructose (GO:0009750);; Biological Process: photorespiration (GO:0009853);; Biological Process: cellular cation homeostasis (GO:0030003);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Cellular Component: apoplast (GO:0048046);; Molecular Function: serine-glyoxylate transaminase activity (GO:0050281);; Biological Process: divalent metal ion transport (GO:0070838);; ","K00830|0|osa:4345962|Os08g0502700; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] (A)","Alanine, aspartate and glutamate metabolism (ko00250);; Glycine, serine and threonine metabolism (ko00260);; Glyoxylate and dicarboxylate metabolism (ko00630);; Carbon metabolism (ko01200);; Peroxisome (ko04146)","Serine--glyoxylate aminotransferase GN=AGT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","E","Amino acid transport and metabolism","Os08g0502700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029341",14.24513,20.21787,8.95813,28.42599,9.12404,28.45524,0.00683547542408909,1.08214757787438,"up","--","--","Cellular Component: protein phosphatase type 2A complex (GO:0000159);; Biological Process: signal transduction (GO:0007165);; Molecular Function: growth factor activity (GO:0008083);; Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);; Cellular Component: plastid (GO:0009536);; Cellular Component: membrane (GO:0016020);; ","K11584|0|dosa:Os09t0542700-00|Os09g0542700; Protein phosphatase 2A, regulatory B subunit, B56 family protein.; K11584 serine/threonine-protein phosphatase 2A regulatory subunit B' (A)","mRNA surveillance pathway (ko03015)","Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B&apos; beta isoform GN=B&apos;BETA OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_32235 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004644",202.9961,410.172,271.46,362.146,77.2639,364.63,0.00816997046287147,1.07918769417444,"up","[Z]","Cytoskeleton ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: microtubule (GO:0005874);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: microtubule-based movement (GO:0007018);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: protein polymerization (GO:0051258);; ","K07375|0|zma:100381281|uncharacterized LOC100381281; K07375 tubulin beta (A)","Phagosome (ko04145)","Tubulin beta-6 chain GN=TUBB6 OS=Zea mays (Maize) PE=2 SV=1","Z","Cytoskeleton","hypothetical protein OsI_04129 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029798",29.7805,54.4229,33.9688,58.2481,14.08339,59.5192,0.00291952460955569,1.07423460273006,"up","[R]","General function prediction only ","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plastid (GO:0009536);; Biological Process: response to bacterium (GO:0009617);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: lignin biosynthetic process (GO:0009809);; Molecular Function: aryl-alcohol dehydrogenase (NAD+) activity (GO:0018456);; Molecular Function: cinnamyl-alcohol dehydrogenase activity (GO:0045551);; Cellular Component: apoplast (GO:0048046);; Molecular Function: sinapyl alcohol dehydrogenase activity (GO:0052747);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00083|0|dosa:Os09t0400000-00|Os09g0400000, CINNAMYL_ALCOHOL_DEHYDROGENASE_8B, CAD8B; Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).; K00083 cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] (A)","Phenylpropanoid biosynthesis (ko00940)","Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","RecName: Full=Probable cinnamyl alcohol dehydrogenase 8B; Short=OsCAD8B [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004000",30.9629,63.78596,46.0658594,66.977,16.05433,62.33368,0.00344021528062173,1.07084130880834,"up","--","--","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: photosystem II oxygen evolving complex (GO:0009654);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosynthesis (GO:0015979);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Cellular Component: extrinsic component of membrane (GO:0019898);; Biological Process: protein targeting to chloroplast (GO:0045036);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","PsbP domain-containing protein 5, chloroplastic (Precursor) GN=PPD5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3","R","General function prediction only","hypothetical protein OsI_02877 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028915",8.26068,13.30509,9.725,21.08575,7.82917,19.88197,0.00802320295793273,1.06813735727328,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: metabolic process (GO:0008152);; Molecular Function: galactinol-sucrose galactosyltransferase activity (GO:0047274);; ","K06617|0|obr:102722414|probable galactinol--sucrose galactosyltransferase 1-like; K06617 raffinose synthase [EC:2.4.1.82] (A)","Galactose metabolism (ko00052)","Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","putative alkaline alpha-galactosidase seed imbibition protein [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005638",2.40451285943,5.75364000036055,3.276030713396,6.23202100123427,2.47197,4.28056,0.00990413741726,1.06779783558574,"up","[Z]","Cytoskeleton ","Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Biological Process: cell proliferation (GO:0008283);; Cellular Component: plasmodesma (GO:0009506);; ","K10395|0|obr:102719929|chromosome-associated kinesin KIF4A-like; K10395 kinesin family member 4/21/27 (A)","--","Kinesin-like protein FLA10 GN=FLA10 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=1 SV=1","Z","Cytoskeleton","hypothetical protein OsI_08901 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002379",42.8756,114.582,55.6862,134.314,47.1454,86.1449,0.00463950793608644,1.05868702891182,"up","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleolus (GO:0005730);; Biological Process: nucleosome assembly (GO:0006334);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11252|4.60457e-59|osa:4324495|Os01g0152300; K11252 histone H2B (A)","--","Histone H2B.10 GN=H2B.10 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","B","Chromatin structure and dynamics","RecName: Full=Histone H2B.10 [Oryza sativa Indica Group] "]
["gene:BGIOSGA020209",17.88183,28.7649,15.0132,42.5793,10.00241,28.28994,0.00619187285649843,1.05507152290692,"up","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","GATA transcription factor 12 GN=GATA12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","Os05g0520300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005374",28.1826,51.95692807,25.3958684,62.225594,16.655296,39.873751,0.00370706948140076,1.05419153392979,"up","--","--","Molecular Function: iron ion binding (GO:0005506);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Protein ECERIFERUM 1 GN=CER1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","hypothetical protein OsI_09413 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002744",122.695,221.125,111.276,246.106,73.0264,232.924,0.00777700648521914,1.04640227247815,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","--","Protein ASPARTIC PROTEASE IN GUARD CELL 1 (Precursor) GN=ASPG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_00323 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004458",35.300293,60.5661115338,42.086341,89.44034,31.7134544292,85.24089,0.00456207289178717,1.04216191343646,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: protein targeting to chloroplast (GO:0045036);; ","K02871|5.98574e-132|osa:4325555|Os01g0749200; K02871 large subunit ribosomal protein L13 (A)","Ribosome (ko03010)","50S ribosomal protein L13, chloroplastic (Precursor) GN=T30F21.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Os01g0749200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA027629",11.223259089,22.631570253,12.722165279,25.4052179,11.5137952846,25.0280400118245,0.00524535999323026,1.03903511818013,"up","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity (GO:0003918);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: chromosome (GO:0005694);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: DNA topological change (GO:0006265);; Biological Process: double-strand break repair (GO:0006302);; Biological Process: mitotic recombination (GO:0006312);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: reciprocal meiotic recombination (GO:0007131);; Biological Process: cell adhesion (GO:0007155);; Biological Process: embryo sac development (GO:0009553);; Biological Process: pollen development (GO:0009555);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: response to gamma radiation (GO:0010332);; Biological Process: regulation of telomere maintenance (GO:0032204);; Biological Process: multicellular organism reproduction (GO:0032504);; Biological Process: meiotic DNA double-strand break formation (GO:0042138);; Biological Process: telomere maintenance in response to DNA damage (GO:0043247);; Biological Process: actin nucleation (GO:0045010);; Biological Process: meiotic chromosome segregation (GO:0045132);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: seed development (GO:0048316);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: chiasma assembly (GO:0051026);; Biological Process: cell wall organization (GO:0071555);; ","K10878|0|osa:4344697|Os08g0156900; K10878 meiotic recombination protein SPO11 (A)","--","Meiotic recombination protein SPO11-2 GN=SPO11-2 OS=Oryza sativa subsp. indica (Rice) PE=1 SV=1","L","Replication, recombination and repair","hypothetical protein OsI_27876 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027082",8.7427447,26.6176913212326,14.0060678095907,20.0499952092453,16.879014493792,23.031520763577,0.00710198963589127,1.03656496362822,"up","[C]","Energy production and conversion ","Cellular Component: cytosol (GO:0005829);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);; Biological Process: carbon fixation (GO:0015977);; Biological Process: photosynthesis (GO:0015979);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Cellular Component: apoplast (GO:0048046);; ","K01595|0|osa:4345387|Os08g0366000; K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31] (A)","Pyruvate metabolism (ko00620);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicolor (Sorghum) PE=3 SV=1","C","Energy production and conversion","hypothetical protein OsI_28999 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011667",103.883,230.382,112.151,239.119,73.5318,161.298,0.00763239678399974,1.03516369611374,"up","[Z]","Cytoskeleton ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: microtubule (GO:0005874);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: cytoskeleton organization (GO:0007010);; Biological Process: microtubule-based movement (GO:0007018);; Biological Process: response to salt stress (GO:0009651);; Biological Process: proteasomal protein catabolic process (GO:0010498);; Cellular Component: tubulin complex (GO:0045298);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: protein polymerization (GO:0051258);; ","K07375|0|dosa:Os03t0105600-01|Os03g0105600, TUB2, BETA-TUBULIN_2; Tubulin beta-1 chain (Beta-1 tubulin).; K07375 tubulin beta (A)","Phagosome (ko04145)","Tubulin beta-2 chain GN=OSJNBa0009C08.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Z","Cytoskeleton","hypothetical protein OsI_09642 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022266",33.5615,54.8307,32.2452,65.7868,15.6853,53.1333,0.00728817051305826,1.02895067860006,"up","--","--","--","--","--","--","S","Function unknown","Os06g0138900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA033426",107.283864199,195.60993,117.544076104,320.83379,123.99086,234.57628,0.0083604909495073,1.02304181612276,"up","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: sexual reproduction (GO:0019953);; ","--","--","Expansin-B4 (Precursor) GN=OSJNBa0010C11.2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os10g0556100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013864",15.0108,32.0021,19.622,30.0547,12.2297,32.069,0.00541343136944447,1.02135196631722,"up","[LKJ]","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; ","--","--","DEAD-box ATP-dependent RNA helicase 3, chloroplastic (Precursor) GN=OSJNBa0010E04.4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","A","RNA processing and modification","hypothetical protein OsI_14162 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004001",9.807233,21.520907415,13.742097,20.934306,9.00372100000001,20.596851,0.00768486936433276,1.0205512105523,"up","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K17506|0|obr:102713039|probable protein phosphatase 2C 7-like; K17506 protein phosphatase 1L [EC:3.1.3.16] (A)","--","Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein OsI_02880 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004477",41.1659,88.262,58.2941,89.6758,31.4326,100.032,0.00567644413825338,1.0159432642145,"up","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_03772 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004482",53.89176742509,123.92978254498,65.75441823873,117.07225915412,62.1584829326,103.16491794915,0.00813084927787669,1.01191030831191,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","S","Function unknown","hypothetical protein OsI_03789 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032009",16.035697227,31.912258145,20.536142,28.524834,11.45082,30.531854,0.00671569116747388,1.00230226126883,"up","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","Protein STRUBBELIG-RECEPTOR FAMILY 6 (Precursor) GN=SRF6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_33412 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003739",25.8202840000154,3.140384460748,133.359850000019,6.03070000087409,154.45079,5.15491725871,0.00836398009041539,-4.58482355044332,"down","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_02379 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002184",1.31552,0,1.16818,0.255711,1.35059,0.126181,{"v":0.000502639701409623,"d":"5.03E-04"},-4.19852961937863,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: plastid (GO:0009536);; ","K09286|1.01337e-93|osa:4327064|Os01g0200600; K09286 EREBP-like factor (A)","--","Ethylene-responsive transcription factor TINY GN=F18A17.60 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","hypothetical protein OsI_00788 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012360",0.567967,0.137455,1.4343,0.0442131,1.81549,0.107123,{"v":0.000663015115715389,"d":"6.63E-04"},-4.07590893985226,"down","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuolar lumen (GO:0005775);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: vacuolar transport (GO:0007034);; Biological Process: response to nematode (GO:0009624);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","--","ABC transporter G family member 5 {ECO:0000303|PubMed:18299247} OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_11045 [Oryza sativa Indica Group]"]
["Rice_newGene_1353",3.75291,0.0517994,1.31409,0.122121,2.9026,0.50001,{"v":0.000621342195080085,"d":"6.21E-04"},-3.74169987858952,"down","--","--","--","--","--","--","--","--","hypothetical protein OsJ_12421 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA002904",24.7769,4.10397,46.7925,5.74577,51.3487,1.16217,{"v":2.49884474838003e-07,"d":"2.50E-07"},-3.58226724237179,"down","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","S","Function unknown","hypothetical protein OsI_00676 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029404",29.9019,4.23311,36.4862,5.95491,54.4527,1.21873,{"v":7.20677737629826e-10,"d":"7.21E-10"},-3.53664873002154,"down","--","--","--","--","--","BON1-associated protein 2 GN=F4I18.26 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os09g0526500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013832",160.867,25.4251,258.527,39.395,340.599,6.50467,{"v":2.34533140731925e-07,"d":"2.35E-07"},-3.53394922360148,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","Zinc finger protein ZAT8 GN=ZAT8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Os03g0820400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023704",121.712,13.03146,160.473,34.03377,258.6991,4.66578,{"v":2.28179616863351e-05,"d":"2.28E-05"},-3.46728965757227,"down","--","--","--","--","--","Uncharacterized protein At5g05190 GN=Y-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_27352 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002918",436.693,84.679,674.257,131.5192,977.134,25.2728,{"v":0.000152049777142358,"d":"1.52E-04"},-3.29910539013915,"down","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast (GO:0009507);; ","--","--","--","L","Replication, recombination and repair","Os01g0186900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004548",3.63771,0.503576,3.90943,0.637319,6.03094,0.473444,{"v":2.81883173846896e-05,"d":"2.82E-05"},-3.29354042746482,"down","--","--","Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_03940 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017982",5.40461,0.784066,8.93021,1.12889,11.095,1.15658,{"v":8.75908732236395e-06,"d":"8.76E-06"},-3.27136475348025,"down","--","--","--","--","--","--","--","--","hypothetical protein OsI_20098 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011783",22.9537,3.18853,18.9954,3.39938,44.5695,3.78348,0.00175931589919937,-3.22550162540939,"down","--","--","--","--","--","--","S","Function unknown","Os03g0133100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA003346",7.30526,0.844934,5.68849,1.87262,14.2806,0.716277,0.00170777931763581,-3.17805223517224,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: transcription, DNA-templated (GO:0006351);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","S","Function unknown","Os01g0306400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005838",363.383,56.6334,443.13,101.819,833.919,37.2888,{"v":0.000705231763219566,"d":"7.05E-04"},-3.16917941580046,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Probable E3 ubiquitin-protein ligase XERICO GN=XERICO OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_08484 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005320",3.95126,0.161549,2.32022,0.456728,3.32458,0.793373,0.00124030064098384,-3.11433807958428,"down","--","--","--","--","--","--","--","--","hypothetical protein OsI_09540 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016603",0.8106212847,0.1976807441,0.8273544992075,0.106347228066,1.40543733841,0.0876741858008887,{"v":2.11403749879431e-05,"d":"2.11E-05"},-3.07367793623171,"down","--","--","--","--","--","C2 and GRAM domain-containing protein At5g50170 GN=At5g50170 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_16308 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014403",641.4442,220.5381,1197.7551,150.53127,1467.2841,33.30745,{"v":7.08762730837731e-05,"d":"7.09E-05"},-3.06675992880072,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: cell wall (GO:0005618);; Biological Process: cellular glucan metabolic process (GO:0006073);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Cellular Component: apoplast (GO:0048046);; ","--","--","Xyloglucan endotransglucosylase/hydrolase protein 24 (Precursor) GN=At4g30270 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_17282 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005005",40.4325,16.62154,79.7074,9.88651,108.0992,2.1586316018,{"v":0.000859350405492258,"d":"8.59E-04"},-3.05370202613025,"down","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; ","--","--","--","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein OsI_04834 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022000",41.39753,16.70484,86.9284,22.63373,136.1945,3.016120490762,0.00209330056090039,-2.94521353184286,"down","--","--","--","--","--","--","S","Function unknown","Os06g0133500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000087",57.6828,9.7735,83.266,27.3302,127.319,3.32465,{"v":0.000184773269023993,"d":"1.85E-04"},-2.91969652116331,"down","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","K13448|1.88475e-101|dosa:Os01t0955100-01|Os01g0955100; Similar to Calmodulin-like protein (Fragment).; K13448 calcium-binding protein CML (A)","Plant-pathogen interaction (ko04626)","Probable calcium-binding protein CML31 GN=B1139B11.15 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_05248 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005593",270.769,78.5425,331.91,48.8297,345.516,6.24638,{"v":2.24992603037232e-18,"d":"2.25E-18"},-2.88998721669101,"down","--","--","--","--","--","Protein EXORDIUM (Precursor) GN=EXO OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_08993 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018153",18.59919,3.222576327,22.1647,4.93302028,44.6136,4.28759,0.00395435870983604,-2.88835660606286,"down","[TZDR]","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: mitochondrion (GO:0005739);; ","K13448|1.92055e-101|osa:4338633|Os05g0380900; K13448 calcium-binding protein CML (A)","Plant-pathogen interaction (ko04626)","Probable calcium-binding protein CML15 GN=OSJNBa0088M05.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","Os05g0380900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA034486",485.421,230.096,810.808,139.196,1371.46,14.1061,0.00635876517919463,-2.88330493481653,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: alkane 1-monooxygenase activity (GO:0018685);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Cytochrome P450 94C1 GN=CYP94C1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","Os11g0151400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004326",39.49002,9.5314689166,57.99377,12.47256,85.678588,3.693581,{"v":0.000572735476409326,"d":"5.73E-04"},-2.86559154931657,"down","--","--","Cellular Component: plastid (GO:0009536);; Cellular Component: membrane (GO:0016020);; ","--","--","--","S","Function unknown","hypothetical protein OsI_03497 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017604",62.3829,9.59926,66.9659,28.2856,148.596,4.77923,0.00904389293857246,-2.85637263593755,"down","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_20903 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000659",61.1965,10.5764,84.1804,22.939,108.546,8.04982,{"v":1.34787470366537e-07,"d":"1.35E-07"},-2.84863778176918,"down","--","--","--","--","--","--","S","Function unknown","Os01g0793900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA016269",8.99319109574,1.470388,8.0046158836,1.4781631039,10.27190599469,1.39626173804,{"v":1.05297362692699e-06,"d":"1.05E-06"},-2.82518861355164,"down","--","--","--","--","--","--","--","--","Os04g0387300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005006",12.4769,6.20159,28.7342,4.5101,34.253,0.395633,0.00338568701422465,-2.80610727297921,"down","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; ","--","--","Exocyst complex component EXO70A1 GN=EXO70A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein OsI_04835 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036115",48.0593,19.5046,90.5132,18.7376,133.965,5.13791,0.00245937640206731,-2.80598103724492,"down","--","--","--","--","--","--","--","--","hypothetical protein OsI_38486 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028631",77.1887,23.8604,101.031,28.2538,183.006,5.371,0.0020712999601233,-2.78339406270493,"down","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","S","Function unknown","hypothetical protein OsI_29162 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009004",4.23073,0.652012,3.47386,0.950685,5.49583,0.562652,{"v":0.000543244950123808,"d":"5.43E-04"},-2.76168653590942,"down","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: catalytic activity (GO:0003824);; ","--","--","--","--","--","hypothetical protein OsI_08843 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017630",57.913,13.7182,83.6222,23.5421,111.441,4.22425,{"v":2.0056939553181e-06,"d":"2.01E-06"},-2.74715035602835,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","Mitogen-activated protein kinase kinase kinase 2 GN=ANP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_20854 [Oryza sativa Indica Group]"]
["gene:BGIOSGA034195",13.3611827074,2.7580498224,15.247792586,1.5670405346,19.32961,3.63784742338,{"v":1.36378638045559e-12,"d":"1.36E-12"},-2.72261410297176,"down","--","--","Molecular Function: cysteine-type endopeptidase activity (GO:0004197);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K16292|0|osa:4350216|Os11g0255300; K16292 KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] (A)","--","Thiol protease SEN102 (Precursor) GN=SEN102 OS=Hemerocallis sp. (Daylily) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_35710 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009766",577.05,110.542,702.355,234.432,1150.86,71.3844,{"v":8.82739566405613e-05,"d":"8.83E-05"},-2.6893470061812,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","Zinc finger protein 1 OS=Triticum aestivum (Wheat) PE=2 SV=1","R","General function prediction only","Os03g0764100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA015135",9.052039128,1.7289638657,11.73475,1.303039,13.93334,2.244127,{"v":2.5871546683586e-08,"d":"2.59E-08"},-2.68851720276495,"down","[R]","General function prediction only ","Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to vacuole (GO:0006623);; Molecular Function: phosphatidylethanolamine binding (GO:0008429);; Biological Process: response to sucrose (GO:0009744);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: inflorescence development (GO:0010229);; Cellular Component: vesicle (GO:0031982);; Biological Process: regulation of timing of transition from vegetative to reproductive phase (GO:0048510);; Biological Process: negative regulation of cell aging (GO:0090344);; ","--","--","Protein SELF-PRUNING GN=SP OS=Solanum lycopersicum (Tomato) PE=2 SV=1","R","General function prediction only","H0717B12.4 [Oryza sativa Indica Group] "]
["gene:BGIOSGA012018",164.8475,62.76644,256.9029,62.98732,387.6713,23.37383,0.00513521258292921,-2.65943626214263,"down","--","--","--","--","--","--","S","Function unknown","Os03g0189100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000789",5.012865,1.578157,5.09968,1.392065,7.08516,0.6163579801,{"v":1.65857532408907e-05,"d":"1.66E-05"},-2.65882784298166,"down","--","--","--","--","--","Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_03808 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026255",4.38373,0.540098,2.91234,0.304975,6.9422,1.70927,0.00275645528364804,-2.65636249632617,"down","--","--","Molecular Function: carboxylic ester hydrolase activity (GO:0004091);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Biological Process: pollen tube growth (GO:0009860);; ","--","--","Probable carboxylesterase 18 GN=CXE18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","hypothetical protein OsI_27088 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023482",1099.92,185.424,1278.75,433.481,1635.05,103.048,{"v":6.92634935550067e-12,"d":"6.93E-12"},-2.64084199058982,"down","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","--","--","Calcium-binding protein KIC GN=KIC OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Z","Cytoskeleton","hypothetical protein OsI_24211 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022336",34.0943200000001,2.0352415219,14.5867200000174,3.678238,22.0071500002473,4.144026,0.00110691085224234,-2.62350819617107,"down","[H]","Coenzyme transport and metabolism ","Cellular Component: mitochondrion (GO:0005739);; Biological Process: ubiquinone biosynthetic process (GO:0006744);; Molecular Function: 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity (GO:0008425);; ","K00591|7.41869e-65|osa:4340157|Os06g0152300; K00591 polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase [EC:2.1.1.114 2.1.1.64] (A)","Ubiquinone and other terpenoid-quinone biosynthesis (ko00130)","Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial (Precursor) GN=F7F1.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","H","Coenzyme transport and metabolism","hypothetical protein OsI_21709 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005592",16.4147,7.14019,23.9625,1.81092,15.2262,0.493897,{"v":1.07528331099931e-05,"d":"1.08E-05"},-2.61369922520514,"down","--","--","--","--","--","Protein EXORDIUM (Precursor) GN=EXO OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Os02g0756600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023289",4.66645,1.469857,5.22811,1.343352,9.56302,0.8550534,{"v":9.28733797472327e-05,"d":"9.29E-05"},-2.56674437468451,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: plastid (GO:0009536);; ","--","--","Putative DNA-binding protein ESCAROLA GN=ESC OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_23753 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003836",395.3180214028,94.981461335,405.233383816,152.01339,748.466759293,36.035656099,{"v":0.000632496679335673,"d":"6.32E-04"},-2.52437763724597,"down","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast (GO:0009507);; ","--","--","--","L","Replication, recombination and repair","hypothetical protein SORBIDRAFT_03g026050 [Sorghum bicolor] "]
["gene:BGIOSGA011514",54.21333,17.21075,75.7819,19.15682,99.4975,5.583549,{"v":3.00400757887442e-05,"d":"3.00E-05"},-2.52206749982027,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","Putative NAC domain-containing protein 94 GN=ANAC094 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","Os03g0133000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA009926",4.138840953,0.6699333,3.8790303,1.380496,6.74409,0.710481,{"v":8.16713415954003e-05,"d":"8.17E-05"},-2.51377811731573,"down","[E]","Amino acid transport and metabolism ","Molecular Function: glutamate-ammonia ligase activity (GO:0004356);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolytic process (GO:0006096);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: glutamine biosynthetic process (GO:0006542);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: aging (GO:0007568);; Biological Process: nitrogen fixation (GO:0009399);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to blue light (GO:0009637);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to sucrose (GO:0009744);; Biological Process: response to glucose (GO:0009749);; Biological Process: response to fructose (GO:0009750);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: response to far red light (GO:0010218);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: ammonia assimilation cycle (GO:0019676);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; ","K01915|0|osa:4333896|Os03g0712800; K01915 glutamine synthetase [EC:6.3.1.2] (A)","Alanine, aspartate and glutamate metabolism (ko00250);; Arginine and proline metabolism (ko00330);; Glyoxylate and dicarboxylate metabolism (ko00630);; Nitrogen metabolism (ko00910);; Biosynthesis of amino acids (ko01230)","Glutamine synthetase cytosolic isozyme 1-3 GN=OSJNBb0033N16.19 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein OsI_13264 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017790",8.8105,2.18188,11.0096,3.47719,17.4419,1.46018,{"v":0.000919846572306272,"d":"9.20E-04"},-2.50935731794476,"down","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_20478 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000957",248.185,31.244,250.718,96.8733,293.378,22.2522,{"v":1.54185094657362e-13,"d":"1.54E-13"},-2.50767277340626,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","Mitogen-activated protein kinase kinase kinase 3 GN=ANP3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_03402 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012450",164.913,41.5897,226.433,68.1908,207.904,9.14333,{"v":1.74138442852654e-14,"d":"1.74E-14"},-2.50314948608756,"down","--","--","Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; ","--","--","--","S","Function unknown","hypothetical protein OsI_11206 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005656",94.3363,44.07239,151.8728,23.2689,174.2434,11.666309,{"v":4.40370204874143e-06,"d":"4.40E-06"},-2.49557877261864,"down","--","--","Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Formin-like protein 16 (Precursor) GN=OsJ_008039 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Z","Cytoskeleton","RecName: Full=Formin-like protein 16; AltName: Full=OsFH16; Flags: Precursor [Oryza sativa Japonica Group] "]
["gene:BGIOSGA014866",4.067639565,0.4729208242,2.342309,0.8311804791,5.461056,1.0060868026,0.0012430332303505,-2.49461278543144,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: mitochondrion (GO:0005739);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Cytochrome P450 71A9 GN=CYP71A9 OS=Glycine max (Soybean) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_16339 [Oryza sativa Indica Group]"]
["Rice_newGene_1578",2.165907,0.609338,2.161530237,0.6880503057,3.778356,0.311755996,0.00183375663039055,-2.4815026805438,"down","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","--","--","K","Transcription","putative homeodomain transcription factor, 3&apos;-partial [Oryza sativa Japonica Group]"]
["gene:BGIOSGA012016",77.9901,35.0511,156.267,40.5623,167.29,7.91846,{"v":0.000186268922500897,"d":"1.86E-04"},-2.46907911952044,"down","--","--","--","--","--","--","--","--","hypothetical protein OsJ_09711 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA006208",4.79208,1.18749,3.66767,1.65782,8.80571,0.719673,0.00685459381926318,-2.46688757358647,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","RING-H2 finger protein ATL54 GN=ATL54 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_07753 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029772",78.4018,25.5029,141.821,39.1194,181.908,13.3918,{"v":0.000632645707042252,"d":"6.33E-04"},-2.46121895313615,"down","[TZDR]","--","Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: calcium ion binding (GO:0005509);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: membrane fusion (GO:0006944);; Cellular Component: plastid (GO:0009536);; Biological Process: detection of external stimulus (GO:0009581);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: defense response to fungus (GO:0050832);; ","--","--","Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_31346 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017088",984.76,152.01,1018.24,482.34,1493.66,106.066,{"v":2.14815623832292e-08,"d":"2.15E-08"},-2.44963536890276,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","Ethylene-responsive transcription factor 4 GN=ERF4 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","K","Transcription","OSIGBa0152L12.5 [Oryza sativa Indica Group] "]
["gene:BGIOSGA001576",9.59728,3.96188,11.3305,2.06373,11.406,0.358466,{"v":3.52117544189468e-08,"d":"3.52E-08"},-2.41923339119152,"down","--","--","Cellular Component: extracellular region (GO:0005576);; Biological Process: response to chitin (GO:0010200);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","--","--","S","Function unknown","Os01g0498300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA001894",110.896,26.2764,129.362,55.8371,215.968,11.5989,{"v":0.000181033436443938,"d":"1.81E-04"},-2.41406550408229,"down","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","hypothetical protein OsI_01391 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028763",18.6859,6.05095,25.5933,8.60959,38.2552,2.0661,{"v":0.000383552831267342,"d":"3.84E-04"},-2.38959986152306,"down","--","--","Biological Process: response to chitin (GO:0010200);; ","--","--","--","S","Function unknown","hypothetical protein OsI_29420 [Oryza sativa Indica Group]"]
["gene:BGIOSGA007175",328.465,53.1814,375.573,162.365,433.266,26.8264,{"v":3.86261988711481e-12,"d":"3.86E-12"},-2.35580263355949,"down","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_05749 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000176",360.613,91.045,407.14,169.788,677.964,50.5068,{"v":0.00025686604890057,"d":"2.57E-04"},-2.34460518537697,"down","--","--","--","--","--","--","R","General function prediction only","Os01g0934100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012209",211.0363,90.0363,298.4539,64.7729,446.316,32.81258,0.00296415425957931,-2.33480407938233,"down","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_10702 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006306",61.069683,12.64193,56.95465,19.18142,96.80426,17.887,{"v":2.52205427163034e-06,"d":"2.52E-06"},-2.32845114178805,"down","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_07548 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011032",82.1744,24.7518,86.9386,33.5212,172.694,17.002,0.00565904227908562,-2.32592573027883,"down","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: negative regulation of abscisic acid-activated signaling pathway (GO:0009788);; Biological Process: regulation of stomatal movement (GO:0010119);; Molecular Function: metal ion binding (GO:0046872);; ","K14497|0|osa:4332374|Os03g0268600; K14497 protein phosphatase 2C [EC:3.1.3.16] (A)","Plant hormone signal transduction (ko04075)","Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_10903 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016950",37.8576,14.5177,54.5954,20.3518,78.9815,3.70833,{"v":0.000415857821513958,"d":"4.16E-04"},-2.30249168820025,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: cold acclimation (GO:0009631);; ","--","--","Dehydration-responsive element-binding protein 1E GN=OSJNBa0019K04.2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","transcription factor [Oryza sativa Japonica Group]"]
["gene:BGIOSGA014059",980.165,284.668,1106.21,381.901,1461.61,110.643,{"v":1.35077138007771e-09,"d":"1.35E-09"},-2.28140854708898,"down","--","--","Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Protein YLS9 GN=F11F19.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Os04g0685300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA028793",14.76266,4.92385,16.66776,7.6031,27.64881,0.8367095,0.00127801475690111,-2.2668655906674,"down","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","S","Function unknown","hypothetical protein OsI_29469 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011675",757.374,141.536551,816.906813,293.056,1108.09726,158.686,{"v":4.09298983408715e-10,"d":"4.09E-10"},-2.26448321489456,"down","--","--","Molecular Function: cyclin-dependent protein serine/threonine kinase inhibitor activity (GO:0004861);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to stress (GO:0006950);; Biological Process: cell cycle (GO:0007049);; Cellular Component: chloroplast (GO:0009507);; Biological Process: negative regulation of protein serine/threonine kinase activity (GO:0071901);; ","--","--","Cyclin-dependent protein kinase inhibitor EL2 GN=OsJ_09102 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","T","Signal transduction mechanisms","Os03g0107700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012398",90.738,21.77411,103.5336,38.7542,169.052,21.07181,{"v":0.000450779374479462,"d":"4.51E-04"},-2.24707101749249,"down","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Cellular Component: nucleus (GO:0005634);; Biological Process: protein dephosphorylation (GO:0006470);; Cellular Component: plastid (GO:0009536);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; ","K17506|0|dosa:Os03t0292100-01|Os03g0292100; Hypothetical conserved gene.; K17506 protein phosphatase 1L [EC:3.1.3.16] (A)","--","Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_11115 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008780",74.8083,13.6146,81.371,34.7117,114.808,12.5286,{"v":9.37719504478374e-08,"d":"9.38E-08"},-2.23712385606135,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","--","--","hypothetical protein OsI_08412 [Oryza sativa Indica Group]"]
["gene:BGIOSGA015129",205.632,30.434,207.86,99.1913,242.533,23.6177,{"v":9.74983071884566e-12,"d":"9.75E-12"},-2.23654632771222,"down","--","--","Biological Process: regulation of mitotic cell cycle (GO:0007346);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; Biological Process: gravitropism (GO:0009630);; Biological Process: histone deubiquitination (GO:0016578);; Molecular Function: nucleosome binding (GO:0031491);; Molecular Function: histone binding (GO:0042393);; ","--","--","Probable F-box protein At1g60180 GN=At2g36090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","H0622F05.2 [Oryza sativa Indica Group] "]
["gene:BGIOSGA017499",18.5335,4.35339,25.6491,11.9429,41.1936,3.27988,0.00745089599472316,-2.20706558040286,"down","[TZDR]","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: mitochondrion (GO:0005739);; ","K13448|6.32338e-101|osa:4339701|Os05g0577500; K13448 calcium-binding protein CML (A)","Plant-pathogen interaction (ko04626)","Probable calcium-binding protein CML14 GN=OJ1126_B10.8 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_21110 [Oryza sativa Indica Group] "]
["gene:BGIOSGA001029",26.71006,7.097124,28.79381,12.06463,40.88509,4.158331,{"v":0.000219602630806923,"d":"2.20E-04"},-2.19965900809936,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_03248 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022243",285.501,37.8101,321.01,182.589,418.77,43.267,{"v":2.10254268593174e-06,"d":"2.10E-06"},-2.17413242017387,"down","--","--","--","--","--","--","S","Function unknown","Os06g0133400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011312",5.26636,2.63328,6.96219,1.59269,10.0828,1.0026,{"v":0.000632645707042252,"d":"6.33E-04"},-2.17322366773746,"down","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os03g0188200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017321",189.9286,95.0008,328.5533,90.9004,443.6517,37.9864,0.00978830474408392,-2.15227584733032,"down","--","--","Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","P","Inorganic ion transport and metabolism","OSJNBa0043A12.4 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026736",18.45334,5.67814,14.81501,5.73415,33.44427,5.22815,0.00708837495264857,-2.15160380442296,"down","[R]","General function prediction only ","Biological Process: response to stress (GO:0006950);; Molecular Function: O-methyltransferase activity (GO:0008171);; Biological Process: cellular amino acid biosynthetic process (GO:0008652);; Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Biological Process: methylation (GO:0032259);; ","--","--","Caffeoyl-CoA O-methyltransferase OS=Mesembryanthemum crystallinum (Common ice plant) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","Os08g0498600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA001123",6.918281,1.554957139,4.1559640167833,3.75309994601783,8.599768,1.406764392,{"v":0.000217550612202671,"d":"2.18E-04"},-2.14717066477277,"down","--","--","Molecular Function: high-affinity hydrogen:glucose symporter activity (GO:0005358);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: monosaccharide transport (GO:0015749);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: carbohydrate transmembrane transport (GO:0034219);; Biological Process: amino acid import (GO:0043090);; ","--","--","Sugar transport protein 13 GN=F9D12.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_03054 [Oryza sativa Indica Group]"]
["gene:BGIOSGA030535",188.06894177,117.9976408,314.848293,76.89099258,411.619971,26.675080625,0.00288373672819637,-2.14672842593071,"down","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","Probable WRKY transcription factor 46 GN=WRKY46 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","TPA: TPA_inf: WRKY transcription factor 74 [Oryza sativa (indica cultivar-group)] "]
["gene:BGIOSGA036676",9.666914517,3.05666958,10.5182302141,1.2838073408863,11.936256214,2.2728483425,{"v":1.24801278966122e-06,"d":"1.25E-06"},-2.14400034515756,"down","[GEPR]","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to nematode (GO:0009624);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to zinc ion (GO:0010043);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: zinc ion homeostasis (GO:0055069);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: response to karrikin (GO:0080167);; ","--","--","Protein ZINC INDUCED FACILITATOR-LIKE 1 GN=ZIFL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_37382 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000466",472.269,112.311,489.279,193.43,693.701,103.045,{"v":5.19629078388544e-09,"d":"5.20E-09"},-2.12164724345868,"down","--","--","Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to salicylic acid (GO:0009751);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; ","--","--","Nematode resistance protein-like HSPRO2 GN=HSPRO2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os01g0855600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA032288",25.9881,10.5712,30.8647,7.93614,40.3425,5.08193,{"v":2.5871546683586e-08,"d":"2.59E-08"},-2.11326138848817,"down","--","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: transport (GO:0006810);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: actin cytoskeleton organization (GO:0030036);; Cellular Component: pollen tube tip (GO:0090404);; ","--","--","--","S","Function unknown","hypothetical protein OsI_32748 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010806",34.1387,7.337,20.8429,11.4648,42.3381,5.3095,{"v":0.000394045028927989,"d":"3.94E-04"},-2.10060285599752,"down","[TZDR]","--","Molecular Function: calcium ion binding (GO:0005509);; ","K13448|2.84096e-109|osa:4332731|Os03g0331700; K13448 calcium-binding protein CML (A)","Plant-pathogen interaction (ko04626)","Probable calcium-binding protein CML27 GN=CML27 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","Os03g0331700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005266",67.8802,13.9157,80.0069,35.5879,89.8694,10.0381,{"v":1.24044060740024e-09,"d":"1.24E-09"},-2.06723496344988,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","E3 ubiquitin-protein ligase RING1 GN=RING1 OS=Gossypium hirsutum (Upland cotton) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_05393 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036454",4.07668,0.661114,2.60094,0.971969,4.85285,0.984852,{"v":0.000218886185809046,"d":"2.19E-04"},-2.06548470193033,"down","[S]","Function unknown ","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Receptor-like protein 12 (Precursor) GN=RLP12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","hypothetical protein OsI_37822 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012438",95.6187,56.9282,156.918,33.0446,148.68,9.54502,{"v":6.66114667367207e-05,"d":"6.66E-05"},-2.05105726538873,"down","--","--","Biological Process: cellulose microfibril organization (GO:0010215);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Cellular Component: anchored component of membrane (GO:0031225);; ","--","--","COBRA-like protein 7 (Precursor) GN=dl4100c OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_11192 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020696",17.9092,3.22188,16.71171,5.79894,22.20602,1.958824,{"v":5.70115932076214e-08,"d":"5.70E-08"},-2.02791300866982,"down","--","--","--","--","--","--","--","--","Os06g0673800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013325",255.47,39.6072,231.785,133.25,276.079,33.6672,{"v":1.24044060740024e-09,"d":"1.24E-09"},-2.02714430131563,"down","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: glucuronoxylan biosynthetic process (GO:0010417);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Biological Process: multicellular organism reproduction (GO:0032504);; Biological Process: leaf development (GO:0048366);; Biological Process: cell wall thickening (GO:0052386);; ","--","--","Probable galacturonosyltransferase-like 1 GN=F18O14.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_13016 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023538",4.11091,1.22012,4.19377,1.71981,7.33009,1.23402,0.00118809064352237,-2.02441689606783,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; ","--","--","26S protease regulatory subunit 7 GN=RPT1 OS=Prunus persica (Peach) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_24323 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011686",142.5349,35.22383,133.3374,37.25807,179.0049,39.51666,{"v":1.12785219180948e-09,"d":"1.13E-09"},-2.02334127665945,"down","[R]","General function prediction only ","Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799);; Molecular Function: lyase activity (GO:0016829);; ","--","--","Probable cytokinin riboside 5&apos;-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_09680 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017385",488.731,164.335,627.833,271.511,782.397,74.2587,{"v":1.66720159108125e-06,"d":"1.67E-06"},-2.01639505949491,"down","[A]","RNA processing and modification ","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; ","K12581|0|osa:4337457|Os04g0684900; K12581 CCR4-NOT transcription complex subunit 7/8 (A)","RNA degradation (ko03018)","Probable CCR4-associated factor 1 homolog 11 GN=CAF1-11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","H0913C04.7 [Oryza sativa Indica Group] "]
["gene:BGIOSGA011311",20.9828,10.3068,32.3144,10.0146,41.9352,3.4389,0.00160105739732862,-2.00942727899457,"down","--","--","--","--","--","--","--","--","--"]
["gene:BGIOSGA005584",42.0953,13.2166,51.5315,22.3042,67.5608,8.98351,{"v":8.31381626245876e-08,"d":"8.31E-08"},-2.00257264725312,"down","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_09009 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011433",99.6966,52.0694,134.9548,46.3333,196.8252,17.0776,0.00187399913504529,-2.00070263209708,"down","--","--","Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","P","Inorganic ion transport and metabolism","hypothetical protein OsI_10051 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004490",21.95421,5.287996,15.8461,7.220917,19.95581,4.69933,{"v":8.91779352713122e-08,"d":"8.92E-08"},-1.99737498263256,"down","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","S","Function unknown","hypothetical protein OsI_03809 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019112",902.188,287.136,961.522,408.181,1222.06,162.61,{"v":2.70997658380373e-07,"d":"2.71E-07"},-1.98199118006595,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","Zinc finger CCCH domain-containing protein 33 GN=OSJNBa0056I11.7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_18300 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006319",47.6711,3.73331,31.3644,14.3932,55.9379,17.9598,{"v":0.000521536917262237,"d":"5.22E-04"},-1.9699259214183,"down","--","--","Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to vacuole (GO:0006623);; Molecular Function: phosphatidylethanolamine binding (GO:0008429);; Biological Process: response to sucrose (GO:0009744);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: inflorescence development (GO:0010229);; Cellular Component: vesicle (GO:0031982);; Biological Process: regulation of timing of transition from vegetative to reproductive phase (GO:0048510);; Biological Process: negative regulation of cell aging (GO:0090344);; ","--","--","Protein SELF-PRUNING GN=SP OS=Solanum lycopersicum (Tomato) PE=2 SV=1","R","General function prediction only","Os02g0531600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005621",9.9105,3.62984,16.3108,4.78469,14.8375,1.91633,{"v":1.89739750958013e-05,"d":"1.90E-05"},-1.95848628759018,"down","--","--","Cellular Component: peroxisome (GO:0005777);; ","--","--","F-box/kelch-repeat protein SKIP11 GN=SKIP11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_08938 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027773",7.65781,3.33092,11.9006,2.53613,12.7283,2.67861,{"v":0.000638058984807121,"d":"6.38E-04"},-1.95693636962266,"down","--","--","Biological Process: transport (GO:0006810);; Cellular Component: membrane (GO:0016020);; ","--","--","Probable VAMP-like protein At1g33475 GN=At1g33475 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_27556 [Oryza sativa Indica Group]"]
["gene:BGIOSGA007785",15.2899466743,2.61517833874109,9.117884982,4.7584410419,16.1422581922,3.8139455684286,{"v":8.47342552237098e-05,"d":"8.47E-05"},-1.93708160786619,"down","[BQ]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: DNA mediated transformation (GO:0009294);; Biological Process: jasmonic acid and ethylene-dependent systemic resistance (GO:0009861);; Biological Process: histone acetylation (GO:0016573);; Molecular Function: NAD-dependent histone deacetylase activity (H3-K14 specific) (GO:0032041);; Molecular Function: NAD-dependent histone deacetylase activity (H3-K9 specific) (GO:0046969);; Molecular Function: NAD-dependent histone deacetylase activity (H4-K16 specific) (GO:0046970);; Biological Process: histone H3 deacetylation (GO:0070932);; Biological Process: histone H4 deacetylation (GO:0070933);; Molecular Function: NAD-dependent histone deacetylase activity (H3-K18 specific) (GO:0097372);; Biological Process: regulation of multicellular organismal development (GO:2000026);; ","K06067|0|dosa:Os02t0215200-01|Os02g0215200, CLASS-1_TYPE_HISTON_DEACETYLASE_2, HDAC2; Class-I type histone deacetylase, Vegetative growth; K06067 histone deacetylase 1/2 [EC:3.5.1.98] (A)","--","Probable histone deacetylase 19 OS=Zea mays (Maize) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_06369 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003576",1050.611,291.9202,1303.182,575.1158,1394.538,252.8101,{"v":1.34787470366537e-07,"d":"1.35E-07"},-1.93656508852955,"down","--","--","Biological Process: pollen tube growth (GO:0009860);; ","--","--","--","S","Function unknown","Os01g0384800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000153",3.461512,2.2722341,5.792264,1.443992753,8.01568,0.9074919525,0.00990663866318483,-1.93145233023054,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: defense response (GO:0006952);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: ADP binding (GO:0043531);; Biological Process: xylan catabolic process (GO:0045493);; ","--","--","Basic 7S globulin 2 low kDa subunit (Precursor) OS=Glycine max (Soybean) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_05112 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005591",194.531,152.739,334.158,67.175,354.723,23.7557,0.00253826674654574,-1.92982442362496,"down","--","--","--","--","--","Protein EXORDIUM (Precursor) GN=EXO OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_08995 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004269",145.754,30.3638,129.406,57.2099,142.471,29.6522,{"v":6.80038802289547e-09,"d":"6.80E-09"},-1.9267235007846,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","Mitogen-activated protein kinase kinase kinase 2 GN=ANP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_03400 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022460",73.3253,13.1705,64.3853,33.4983,130.844,32.659,0.00672126626276411,-1.91435562725801,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","RING-H2 finger protein ATL60 GN=ATL60 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","unnamed protein product [Oryza sativa Japonica Group]"]
["gene:BGIOSGA008589",277.4128,89.6484,204.8848,88.3893,413.289,87.6277,0.00168783875162956,-1.87499332200063,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","B-box zinc finger protein 25 {ECO:0000303|PubMed:19920209} GN=At2g31380 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","hypothetical protein OsI_07993 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002149",37.66431,7.332766,29.30871,14.03714,43.77138,11.069416,{"v":8.47459375636431e-08,"d":"8.47E-08"},-1.87285512271033,"down","--","--","Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: oxidation-reduction process (GO:0055114);; ","K04125|7.778e-158|osa:4325537|Os01g0209700; K04125 gibberellin 2-oxidase [EC:1.14.11.13] (A)","Diterpenoid biosynthesis (ko00904)","Gibberellin 2-beta-dioxygenase 1 GN=GA2OX1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_00854 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006160",67.19261,25.313875,82.56249,41.10964,104.94826,16.105766,{"v":2.0056939553181e-06,"d":"2.01E-06"},-1.86983747107027,"down","--","--","Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","--","--","hypothetical protein OsI_07837 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000958",266.107,73.1576,260.536,115.17,253.601,40.2803,{"v":9.56289463177541e-08,"d":"9.56E-08"},-1.86827217111249,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","Mitogen-activated protein kinase kinase kinase 2 GN=ANP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_03401 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010171",247.53,70.2341,229.739,130.721,295.231,37.6064,{"v":1.0009500659214e-07,"d":"1.00E-07"},-1.86458874392107,"down","--","--","Molecular Function: protein kinase activity (GO:0004672);; Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","Patatin-like protein 3 GN=OJ1343_B12.121 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","I","Lipid transport and metabolism","Os03g0640000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019108",84.7893,44.4309,111.834,43.0822,181.467,24.9974,0.00632068658465768,-1.86449015219349,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: membrane fusion (GO:0006944);; Cellular Component: plastid (GO:0009536);; Biological Process: response to ethylene (GO:0009723);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: intracellular signal transduction (GO:0035556);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: negative regulation of programmed cell death (GO:0043069);; ","--","--","Putative serine/threonine-protein kinase-like protein CCR3 (Precursor) GN=F27K19.130 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_18295 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016884",201.993,67.0224,191.572,92.7646,222.66,23.5427,{"v":1.24788927457283e-08,"d":"1.25E-08"},-1.86006751430892,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: plastid (GO:0009536);; ","--","--","Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","Os04g0550200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA010103",14.32088,5.158856366,10.738454,3.41643242511,10.662967,2.0550443649,{"v":1.1026116036243e-06,"d":"1.10E-06"},-1.85767752729291,"down","--","--","Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: nutrient reservoir activity (GO:0045735);; ","--","--","Globulin-1 S allele (Precursor) GN=GLB1 OS=Zea mays (Maize) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_12896 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004493",117.496,70.5807,137.182,49.3126,192.457,18.7907,{"v":0.000383552831267342,"d":"3.84E-04"},-1.85682488565036,"down","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Cellular Component: microtubule associated complex (GO:0005875);; Biological Process: microtubule-based process (GO:0007017);; ","K10418|1.27288e-59|obr:102702052|dynein light chain LC6, flagellar outer arm-like; K10418 dynein light chain LC8-type (A)","--","Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=1 SV=1","Z","Cytoskeleton","putative dynein light chain [Oryza sativa Japonica Group] "]
["gene:BGIOSGA020048",192.74,65.4039,189.136,97.9671,291.854,35.9765,{"v":2.55789890511537e-05,"d":"2.56E-05"},-1.85509948845884,"down","--","--","Cellular Component: ubiquitin ligase complex (GO:0000151);; Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Cellular Component: plastid (GO:0009536);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","U-box domain-containing protein 16 GN=PUB16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Os05g0476700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019014",12.52555,3.3421479618,13.40028,6.9372,12.3334100038,3.26042612715,0.00141584939333861,-1.83936123373499,"down","--","--","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast (GO:0009507);; Biological Process: starch biosynthetic process (GO:0019252);; Molecular Function: heat shock protein binding (GO:0031072);; Molecular Function: unfolded protein binding (GO:0051082);; ","--","--","--","S","Function unknown","hypothetical protein OsI_18119 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001375",60.849964,16.272244,72.12442,32.75813,103.995950000294,17.495706,{"v":0.000941916342589905,"d":"9.42E-04"},-1.82526584757542,"down","--","--","Biological Process: zinc ion transport (GO:0006829);; Cellular Component: plastid (GO:0009536);; Biological Process: single-organism cellular process (GO:0044763);; ","--","--","--","S","Function unknown","Os01g0570800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013629",471.334,151.925,604.391,331.76,729.597,147.273,{"v":1.51819748639325e-06,"d":"1.52E-06"},-1.8195946984795,"down","--","--","Biological Process: fatty acid beta-oxidation (GO:0006635);; ","--","--","--","S","Function unknown","hypothetical protein OsI_13666 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013208",1.1906200566446,0.675666,2.1079700449132,0.699949,2.4019000539278,0.322492,0.00493823610190477,-1.81100854781755,"down","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","Piriformospora indica-insensitive protein 2 (Precursor) GN=PII-2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_12794 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010816",186.069092,32.525500003,123.4977916237,87.711801224,244.693929415,54.853064,0.00362318026223133,-1.79320526073596,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","NAC domain-containing protein 100 GN=NAC100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_11397 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000154",113.796,45.0597,125.176,51.6577,148.384,20.5462,{"v":1.19030829045508e-07,"d":"1.19E-07"},-1.78983660244513,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: xylan catabolic process (GO:0045493);; ","--","--","Basic 7S globulin 2 low kDa subunit (Precursor) OS=Glycine max (Soybean) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os01g0937100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004485",452.896,76.2717,287.806,191.235,624.168,167.692,0.00800041183477549,-1.78499895624038,"down","[R]","General function prediction only ","Molecular Function: iron ion binding (GO:0005506);; Biological Process: response to red light (GO:0010114);; Biological Process: gibberellin catabolic process (GO:0045487);; Molecular Function: C-19 gibberellin 2-beta-dioxygenase activity (GO:0052634);; Biological Process: oxidation-reduction process (GO:0055114);; ","K04125|0|osa:4325145|Os01g0757200; K04125 gibberellin 2-oxidase [EC:1.14.11.13] (A)","Diterpenoid biosynthesis (ko00904)","Gibberellin 2-beta-dioxygenase GN=GA2OX1 OS=Phaseolus coccineus (Scarlet runner bean) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein OsI_03793 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009300",103.824831,37.303463,109.535307,67.8443423,185.287356,23.7327206,0.00491036275202372,-1.77933973197321,"down","--","--","Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","S","Function unknown","hypothetical protein OsI_09464 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032079",7.78952,1.424222,4.98051,3.67683,8.89661,1.655598,0.00219771409300911,-1.77923333360225,"down","[GEPR]","--","Molecular Function: sugar:proton symporter activity (GO:0005351);; Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","Probable polyol transporter 3 GN=PLT3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","hypothetical protein OsI_33208 [Oryza sativa Indica Group]"]
["gene:BGIOSGA020171",17.6274,9.4047,19.91023,6.23654,29.5842,4.38552,{"v":0.000941916342589905,"d":"9.42E-04"},-1.7661616604849,"down","--","--","Cellular Component: plastid (GO:0009536);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; ","--","--","--","S","Function unknown","hypothetical protein OsI_20596 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028889",263.78,125.785,314.927,138.939,462.058,67.8044,{"v":0.000181033436443938,"d":"1.81E-04"},-1.76584448830743,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","Dof zinc finger protein MNB1A GN=MNB1A OS=Zea mays (Maize) PE=1 SV=2","R","General function prediction only","hypothetical protein OsI_29692 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001839",54.4546,26.2611,73.2553,24.1145,103.004,18.0264,0.00241551606057687,-1.76257211400708,"down","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K14803|0|osa:4326717|Os01g0295700; K14803 protein phosphatase 2C homolog 2/3 [EC:3.1.3.16] (A)","--","Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","Os01g0295700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029415",385.8906,230.7662,630.7465,247.0401,621.1889,60.80366,{"v":0.000221959679811558,"d":"2.22E-04"},-1.75571321676094,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to stress (GO:0006950);; Cellular Component: plastid (GO:0009536);; ","--","--","Dehydration-responsive element-binding protein 1A GN=DREB1A OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","K","Transcription","RecName: Full=Dehydration-responsive element-binding protein 1A; Short=Protein DREB1A; AltName: Full=Protein C-repeat-binding factor 3; Short=rCBF3 [Oryza sativa Indica Group] "]
["gene:BGIOSGA005995",316.905,97.0226,326.335,154.974,475.075,107.935,{"v":4.64024374477326e-07,"d":"4.64E-07"},-1.75083868489122,"down","--","--","--","--","--","--","S","Function unknown","Os02g0629000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021563",76.1708,24.3313,62.4855,29.2057,114.794,23.9447,0.00134838494166783,-1.74740158449921,"down","[QR]","--","Molecular Function: O-methyltransferase activity (GO:0008171);; Biological Process: methylation (GO:0032259);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","O-methyltransferase ZRP4 GN=ZRP4 OS=Zea mays (Maize) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_22334 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013241",89.0736,37.1841,97.851,42.0949,141.5608,28.4818,{"v":6.10222923813494e-06,"d":"6.10E-06"},-1.74647869747867,"down","[P]","Inorganic ion transport and metabolism ","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K13754|0|osa:4333615|Os03g0656500; K13754 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 (A)","--","Cation/calcium exchanger 1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_12859 [Oryza sativa Indica Group]"]
["gene:BGIOSGA037019",10.028,5.2919,11.2552,4.57258,14.1785,1.90369,0.00109873383508204,-1.74316823217395,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","NAC domain-containing protein 90 GN=NAC090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","Os12g0156100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013767",6.9897208935056,3.98667355400347,9.41144249,2.16275048103289,13.80653724,3.1990843468644,0.00519270068793319,-1.73715603878124,"down","[PR]","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","Protochlorophyllide-dependent translocon component 52, chloroplastic (Precursor) GN=L73G19.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_13973 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004185",6.797917,3.296577,8.884560134043,2.909244,11.31331,2.488245,0.00894562115769904,-1.72592182006805,"down","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_03235 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028835",319.089876,49.947164900033,191.399573007719,122.303985063972,369.14424038699,95.579695498505,{"v":0.000278564481592779,"d":"2.79E-04"},-1.72305614948198,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: alpha-amylase activity (GO:0004556);; Molecular Function: calcium ion binding (GO:0005509);; Biological Process: starch catabolic process (GO:0005983);; Biological Process: sucrose catabolic process (GO:0005987);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to gibberellin (GO:0009739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: secretion by cell (GO:0032940);; Cellular Component: apoplast (GO:0048046);; ","K01176|0|osa:4345814|Os08g0473900; K01176 alpha-amylase [EC:3.2.1.1] (A)","Starch and sucrose metabolism (ko00500)","Alpha-amylase isozyme 3D (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","G","Carbohydrate transport and metabolism","Os08g0473900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA009178",41.8579,24.7906,60.3107,17.2363,75.1574,12.4082,{"v":0.000615604759362804,"d":"6.16E-04"},-1.72190483626702,"down","[U]","Intracellular trafficking, secretion, and vesicular transport ","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; ","--","--","Protein CYPRO4 GN=CYPRO4 OS=Cynara cardunculus (Cardoon) PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","Os02g0789600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA016756",37.52785,5.938118,24.00071,12.31085,36.73848,12.3512,{"v":4.42766261584804e-05,"d":"4.43E-05"},-1.72103021782792,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","Protein CUP-SHAPED COTYLEDON 1 GN=F4B12.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os04g0515900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA008512",373.059,65.3153,211.122,79.4519,222.597,128.607,0.00189982201033411,-1.71363945521467,"down","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_07851 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005840",320.9104,72.1138,309.3997,178.8841,336.0466,76.8004,{"v":8.09134552299532e-07,"d":"8.09E-07"},-1.70998909886453,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K16281|1.80142e-107|osa:4330324|Os02g0681200; K16281 RING-H2 zinc finger protein RHA1 (A)","--","Probable E3 ubiquitin-protein ligase RHA2B GN=RHA2B OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_08479 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012293",322.41,129.249,257.949,96.9799,405.648,94.4313,{"v":3.18165065544843e-07,"d":"3.18E-07"},-1.70606374969791,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: response to heat (GO:0009408);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: response to ethanol (GO:0045471);; Biological Process: response to arsenic-containing substance (GO:0046685);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: response to copper ion (GO:0046688);; ","K13993|7.09749e-92|osa:4332357|Os03g0266300; K13993 HSP20 family protein (A)","Protein processing in endoplasmic reticulum (ko04141)","17.9 kDa class I heat shock protein GN=OJ1364E02.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os03g0266300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026621",105.03759,52.91321,132.81058,55.937771,138.08026,18.605822,{"v":6.04836896800816e-07,"d":"6.05E-07"},-1.69093792577291,"down","[MG]","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: racemase and epimerase activity, acting on carbohydrates and derivatives (GO:0016857);; Biological Process: cellular metabolic process (GO:0044237);; Molecular Function: coenzyme binding (GO:0050662);; ","K08679|0|osa:4346094|Os08g0526100; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] (A)","Starch and sucrose metabolism (ko00500);; Amino sugar and nucleotide sugar metabolism (ko00520)","UDP-glucuronate 4-epimerase 6 GN=F14O13.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein OsI_29969 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014811",159.7359326463,54.322636,131.0336078891,46.4890129936262,163.009031104742,48.8311605633,{"v":2.99882860903075e-07,"d":"3.00E-07"},-1.68845615299249,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","B-box zinc finger protein 24 {ECO:0000303|PubMed:19920209} GN=At1g06040 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","H0522A01.9 [Oryza sativa Indica Group] "]
["gene:BGIOSGA013814",1203.382261,526.983122,1379.69728,644.180667,2151.90794,410.063,0.00185047619020528,-1.68547339988757,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","stress-induced transcription factor NAC1 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003364",506.722,373.1932,685.068,207.0118,711.141,71.5103,{"v":0.000364604338706363,"d":"3.65E-04"},-1.68361875122538,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","Ethylene-responsive transcription factor ERF071 GN=ERF071 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","hypothetical protein OsI_01597 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026049",106.0364,67.3419,134.4864,57.6589,203.995,27.09731,0.00395435870983604,-1.67544851639308,"down","--","--","--","--","--","LOB domain-containing protein 37 GN=K8K14.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_26687 [Oryza sativa Indica Group]"]
["gene:BGIOSGA006014",22.427694,10.257904,17.42170460729,6.868131,31.451676,5.319397,0.00180415359540756,-1.67067087964175,"down","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","--","--","Oligouridylate-binding protein 1B GN=UBP1B OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_08123 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033188",76.6066,30.48308,80.7635,22.53024,80.5392,24.80782,{"v":5.07867772035139e-07,"d":"5.08E-07"},-1.66600881691708,"down","--","--","Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: apoplast (GO:0048046);; Molecular Function: raffinose alpha-galactosidase activity (GO:0052692);; ","K07407|0|obr:102702220|uncharacterized LOC102702220; K07407 alpha-galactosidase [EC:3.2.1.22] (A)","Galactose metabolism (ko00052);; Glycerolipid metabolism (ko00561);; Sphingolipid metabolism (ko00600);; Glycosphingolipid biosynthesis - globo series (ko00603)","Alpha-galactosidase (Precursor) OS=Coffea arabica (Arabian coffee) PE=1 SV=1","G","Carbohydrate transport and metabolism","putative alpha-galactosidase [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018699",134.106,57.0513,141.362,58.7058,193.633,49.3359,{"v":1.11171633401182e-06,"d":"1.11E-06"},-1.65225939664527,"down","--","--","Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","3&apos;-N-debenzoyl-2&apos;-deoxytaxol N-benzoyltransferase GN=TAX10 OS=Taxus canadensis (Canadian yew) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_18677 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012628",2222.064,1613.224,3553.53,1109.309,3542.44,431.834,0.00245479290651161,-1.65153390053139,"down","--","--","--","--","--","Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_11591 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004289",6.5054600928123,3.645880459613,8.236440166164,3.022390439267,11.465100280775,2.09334003232,{"v":0.00075429482084287,"d":"7.54E-04"},-1.64809721523054,"down","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: manganese ion binding (GO:0030145);; Molecular Function: nutrient reservoir activity (GO:0045735);; Cellular Component: apoplast (GO:0048046);; ","--","--","Germin-like protein 1-2 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","R","General function prediction only","RecName: Full=Germin-like protein 1-2; Flags: Precursor [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012059",7.99935,3.539866,10.41624,3.083619,10.50934,2.537055,0.00320360318789685,-1.63377090481316,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","hypothetical protein OsI_10413 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018751",24.95743,5.21991,25.76173,9.785537691,35.43309,12.031358,{"v":3.52500739016304e-05,"d":"3.53E-05"},-1.62878608820748,"down","[I]","Lipid transport and metabolism ","Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995);; Molecular Function: acyl-CoA oxidase activity (GO:0003997);; Cellular Component: peroxisome (GO:0005777);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; ","K00232|0|osa:4337904|Os05g0163700; K00232 acyl-CoA oxidase [EC:1.3.3.6] (A)","Fatty acid degradation (ko00071);; alpha-Linolenic acid metabolism (ko00592);; Biosynthesis of unsaturated fatty acids (ko01040);; Fatty acid metabolism (ko01212);; Peroxisome (ko04146)","Acyl-coenzyme A oxidase 4, peroxisomal GN=ACX4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","hypothetical protein OsI_18581 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029689",202.2647,110.6868,225.9395,108.6169,355.164,52.9762,0.00716787761657585,-1.62712622086805,"down","--","--","--","K13464|2.8018e-130|osa:4347164|Os09g0439200; K13464 jasmonate ZIM domain-containing protein (A)","Plant hormone signal transduction (ko04075)","Protein TIFY 10A GN=T29M8.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_31517 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008607",209.32691,74.511856,179.66678,75.907715,307.39677,71.162266,{"v":0.000930553928772036,"d":"9.31E-04"},-1.62365374509299,"down","--","--","Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);; Biological Process: S-adenosylmethioninamine biosynthetic process (GO:0006557);; Biological Process: spermine biosynthetic process (GO:0006597);; Biological Process: spermidine biosynthetic process (GO:0008295);; Cellular Component: chloroplast (GO:0009507);; Biological Process: embryo development (GO:0009790);; ","K01611|0|osa:4329955|Os02g0611200; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] (A)","Cysteine and methionine metabolism (ko00270);; Arginine and proline metabolism (ko00330)","S-adenosylmethionine decarboxylase beta chain (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein OsI_08032 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010258",19.0532,5.47037,13.3731,9.33514,27.9097,6.59708,0.00745089599472316,-1.62134264034338,"down","--","--","--","--","--","LOB domain-containing protein 37 GN=K8K14.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_12585 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014134",333.172,114.977,358.137,224.124,482.135,102.948,{"v":2.22747389330568e-06,"d":"2.23E-06"},-1.61702490910756,"down","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; ","K09286|6.08529e-26|osa:4337341|Os04g0669200; K09286 EREBP-like factor (A)","--","Ethylene-responsive transcription factor 7 GN=MQC12.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os04g0669200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA019845",212.34,71.5599,196.13,111.734,317.263,70.5434,{"v":0.000151573687263972,"d":"1.52E-04"},-1.61017059623633,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Basic 7S globulin low kDa subunit (Precursor) GN=BG OS=Glycine max (Soybean) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_19909 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013197",21.3751959430003,6.618727249156,14.6927723678,6.19404678407301,28.39098474062,9.52838694474687,0.00172196840180094,-1.60907026372787,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K16189|1.05003e-124|sita:101760676|transcription factor PIF1-like; K16189 phytochrome-interacting factor 4 (A)","Plant hormone signal transduction (ko04075)","Transcription factor PIF3 GN=F14J9.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","hypothetical protein OsI_12756 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023543",82.9627,47.4171,99.6534,32.6145,116.435,20.1804,{"v":2.37579290403293e-06,"d":"2.38E-06"},-1.60657448473058,"down","--","--","Cellular Component: exocyst (GO:0000145);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: exocytosis (GO:0006887);; ","K07195|0|osa:4341952|Os06g0698600; K07195 exocyst complex component 7 (A)","--","Exocyst complex component EXO70A1 GN=EXO70A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein OsI_24332 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010605",12.7424,3.851111605,11.46344998263,4.36034000053199,15.8333,4.64680270849,{"v":0.000446457140882138,"d":"4.46E-04"},-1.60290741385606,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to salt stress (GO:0009651);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: response to karrikin (GO:0080167);; ","K14498|0|osa:4333017|Os03g0390200; K14498 serine/threonine-protein kinase SRK2 [EC:2.7.11.1] (A)","Plant hormone signal transduction (ko04075)","Serine/threonine-protein kinase SAPK1 GN=OOSJNBa0017N12.8 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_11876 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028839",69.022800560549,31.14280157093,87.19920181969,29.09050118908,86.11500104016,23.499000983813,{"v":1.34755085741507e-06,"d":"1.35E-06"},-1.60262364845395,"down","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_29574 [Oryza sativa Indica Group]"]
["Rice_newGene_962",47.6274,18.26077,39.11659,15.28775,48.713,15.36872,{"v":0.000147445644838525,"d":"1.47E-04"},-1.60227513742704,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","O","Posttranslational modification, protein turnover, chaperones","Os02g0682700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA009523",87.4926,21.61893,88.9571,22.62129,69.9269,36.22478,{"v":3.55334530863896e-06,"d":"3.55E-06"},-1.60094017495517,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","hypothetical protein OsI_14151 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008787",35.3381,11.179,29.4263,15.0145,37.5785,10.6839,{"v":3.06112364100099e-05,"d":"3.06E-05"},-1.59975074573286,"down","--","--","Molecular Function: catalytic activity (GO:0003824);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; ","--","--","--","S","Function unknown","unknown protein [Oryza sativa Japonica Group]"]
["gene:BGIOSGA004018",131.776218751,55.0333958944,133.518808609,54.734945916,174.815553387,33.653125,{"v":1.05300023410593e-05,"d":"1.05E-05"},-1.59814301093241,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; Biological Process: cell division (GO:0051301);; ","--","--","Katanin p60 ATPase-containing subunit A1 {ECO:0000255|HAMAP-Rule:MF_03023} GN=At1g80350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_02914 [Oryza sativa Indica Group]"]
["gene:BGIOSGA036257",9.62283,3.44404,9.71455,3.06311,7.66983,2.09981,{"v":3.17990162665749e-05,"d":"3.18E-05"},-1.56761199326376,"down","[KLB]","--","Cellular Component: plastid (GO:0009536);; Biological Process: cellular process (GO:0009987);; ","--","--","FACT complex subunit SPT16 GN=OSJNBb0062H02.2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","E","Amino acid transport and metabolism","hypothetical protein OsI_38208 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009273",110.776,30.0062,93.9565,64.6503,160.919,42.9711,{"v":0.000785816025631166,"d":"7.86E-04"},-1.55925882158118,"down","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","3-ketoacyl-CoA synthase 12 (Precursor) GN=KCS12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_09409 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021088",19.0647,10.0319,15.9108,5.03195,22.8578,7.06919,0.00344800921849733,-1.55872086867196,"down","--","--","Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","S","Function unknown","Os06g0542300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA021514",227.9577,77.7947,271.7585,171.1932,296.111,53.395,{"v":1.18338550582583e-05,"d":"1.18E-05"},-1.55757389083417,"down","[LR]","--","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: hydrolase activity (GO:0016787);; ","K07766|6.6298e-108|osa:4340670|Os06g0255400; K07766 diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] (A)","--","Nudix hydrolase 21, chloroplastic (Precursor) GN=T9L24.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein OsI_22410 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019032",121.306,57.458,141.321,69.8114,199.502,41.8286,{"v":0.000268185319938696,"d":"2.68E-04"},-1.55244391974685,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: proteolysis (GO:0006508);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","--","--","hypothetical protein OsI_18156 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011879",7.22929,1.83912,4.89948,3.31401,9.24114,2.68569,0.00340040060031467,-1.53640500568335,"down","[HC]","--","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","SufE-like protein, chloroplastic (Precursor) GN=M3E9.70 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","H","Coenzyme transport and metabolism","hypothetical protein OsI_10062 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010303",29.3276,18.28018,50.4627,21.42281,55.037,9.03633,0.00564092617731762,-1.53595800348628,"down","[E]","Amino acid transport and metabolism ","Molecular Function: asparaginase activity (GO:0004067);; Cellular Component: cytosol (GO:0005829);; Biological Process: glycoprotein catabolic process (GO:0006516);; ","K13051|1.1958e-170|osa:4333381|Os03g0597600; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5] (A)","--","Isoaspartyl peptidase/L-asparaginase 1 subunit beta (Precursor) GN=At5g08100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","E","Amino acid transport and metabolism","hypothetical protein OsI_12500 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017796",1318.506,486.6686,1421.914,870.6774,1808.252,391.7138,{"v":0.000109800968207165,"d":"1.10E-04"},-1.5230395789891,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: plastid (GO:0009536);; ","--","--","Ethylene-responsive transcription factor 9 GN=MLN1.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Os05g0497300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA012049",390.3878,203.235,437.483,198.6884,725.753,135.29,0.00855935026977199,-1.52043299895949,"down","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","Protein indeterminate-domain 1 {ECO:0000303|PubMed:16784536} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","hypothetical protein OsI_10388 [Oryza sativa Indica Group]"]
["gene:BGIOSGA009210",934.84,580.899,1133.951,571.466,1759.798,345.672,0.00700204084982786,-1.5175381299839,"down","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","Os02g0797600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA016861",394.725,269.436,460.642,211.1,730.53,125.153,0.00630716255611384,-1.51361151342303,"down","--","--","Molecular Function: chromatin binding (GO:0003682);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plastid (GO:0009536);; ","--","--","--","K","Transcription","hypothetical protein OsI_16838 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002720",16.7642,9.56704,21.8829,10.8432,26.8757,3.55025,0.00128894185738524,-1.49167518624141,"down","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_00278 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012317",41.22,21.4555,42.2682,17.3916,56.8049,15.7322,{"v":1.27500483832166e-05,"d":"1.28E-05"},-1.4909719343941,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: proteolysis (GO:0006508);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: programmed cell death (GO:0012501);; ","--","--","Aspartic proteinase PCS1 (Precursor) GN=T7H20.240 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os03g0271900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA005776",5.43974,2.71745,4.58459,1.539341,7.32231,1.380097,0.00358722422155644,-1.46739725974508,"down","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: chloroplast envelope (GO:0009941);; ","--","--","Regulator of nonsense transcripts 1 homolog GN=MQD22.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","L","Replication, recombination and repair","hypothetical protein OsI_08612 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013593",143.789583,45.62145,90.06099,44.01599055,141.4783783,51.3728000000003,{"v":8.93223531037256e-05,"d":"8.93E-05"},-1.46495411292042,"down","--","--","Molecular Function: intracellular cAMP activated cation channel activity (GO:0005222);; Molecular Function: inward rectifier potassium channel activity (GO:0005242);; Molecular Function: calcium channel activity (GO:0005262);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: nitric oxide mediated signal transduction (GO:0007263);; Biological Process: plant-type hypersensitive response (GO:0009626);; Cellular Component: membrane (GO:0016020);; Molecular Function: cyclic nucleotide binding (GO:0030551);; Biological Process: calcium ion transmembrane transport (GO:0070588);; ","K05391|0|bdi:100830976|cyclic nucleotide-gated ion channel 2; K05391 cyclic nucleotide gated channel, other eukaryote (A)","Plant-pathogen interaction (ko04626)","Cyclic nucleotide-gated ion channel 2 GN=T20K14_20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein OsI_13606 [Oryza sativa Indica Group] "]
["gene:BGIOSGA008784",580.8393,205.0794,495.3645,228.1012,507.216,172.0856,{"v":0.000145574719507152,"d":"1.46E-04"},-1.46421140781128,"down","[E]","Amino acid transport and metabolism ","Cellular Component: integral component of membrane (GO:0016021);; ","K14209|0|osa:4330274|Os02g0670900; K14209 solute carrier family 36 (proton-coupled amino acid transporter) (A)","--","Lysine histidine transporter-like 5 GN=At1g71680 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","E","Amino acid transport and metabolism","hypothetical protein OsI_08421 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014538",80.0251,18.7561,72.6048,54.7298,118.192,31.0413,0.00488743339149518,-1.4628953594154,"down","[E]","Amino acid transport and metabolism ","Cellular Component: integral component of membrane (GO:0016021);; ","K14209|0|dosa:Os04t0565500-01|Os04g0565500; Similar to OSIGBa0158F05.8 protein.; K14209 solute carrier family 36 (proton-coupled amino acid transporter) (A)","--","Lysine histidine transporter-like 3 GN=At1g61270 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","E","Amino acid transport and metabolism","OSIGBa0158F05.8 [Oryza sativa Indica Group] "]
["gene:BGIOSGA000905",286.1971,118.5808,221.39594,87.18648,316.73002,80.72698,{"v":0.00016972088288455,"d":"1.70E-04"},-1.46116720259531,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","K10144|0|osa:4324695|Os01g0719100; K10144 RING finger and CHY zinc finger domain-containing protein 1 [EC:6.3.2.19] (A)","Ubiquitin mediated proteolysis (ko04120)","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_03534 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019099",42.6513197031,12.2384140087,34.7519600011294,15.1138021828,19.8220041365,12.5452393812,0.00224323683340412,-1.4476141825204,"down","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","--","--","hypothetical protein OsI_18279 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008698",179.955002714,59.253101049,129.697214764,66.0453246656,175.299078599,61.037307,{"v":3.11951403816869e-05,"d":"3.12E-05"},-1.44350181621382,"down","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; ","K09422|1.24899e-126|obr:102708408|transcription factor LAF1-like; K09422 myb proto-oncogene protein, plant (A)","--","Transcription factor LAF1 GN=M7J2.70 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","hypothetical protein OsI_08236 [Oryza sativa Indica Group]"]
["gene:BGIOSGA017051",12.16804,4.294952,11.77625,5.044004,14.95585,4.477682,0.00183375663039055,-1.43590257579442,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: membrane (GO:0016020);; ","--","--","Myb family transcription factor APL GN=APL OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","hypothetical protein OsI_17252 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029792",23.2894552457,9.1424764179,22.5233354133,9.8798762441,32.0111421199,8.747663827,{"v":2.9456921805562e-05,"d":"2.95E-05"},-1.43383753913156,"down","[T]","Signal transduction mechanisms ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);; Biological Process: cellular protein metabolic process (GO:0044267);; Biological Process: phosphatidylinositol phosphorylation (GO:0046854);; ","K00921|0|sita:101761680|putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C-like; K00921 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] (A)","Inositol phosphate metabolism (ko00562);; Phosphatidylinositol signaling system (ko04070);; Phagosome (ko04145)","1-phosphatidylinositol-3-phosphate 5-kinase FAB1A GN=FAB1A OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_31305 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002833",103.34,34.1528,89.0175,36.3777,102.7602,38.9639,{"v":2.21960820986105e-05,"d":"2.22E-05"},-1.43192707430454,"down","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: plastid (GO:0009536);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","Transcription factor bHLH30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","Os01g0159800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018119",17.342252,7.46013,14.00597,5.81916541773,16.45182,6.891524,{"v":0.000472566969892701,"d":"4.73E-04"},-1.42372102060521,"down","--","--","--","--","--","Sigma factor binding protein 1, chloroplastic (Precursor) GN=SIB1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_19832 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001167",31.125,20.32647,41.6027,11.66154,31.99713,11.47328,{"v":7.18027555537951e-05,"d":"7.18E-05"},-1.41783875211559,"down","--","--","--","--","--","Transcription factor IBH1 GN=OSJNBa0015K02.11 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=2","S","Function unknown","hypothetical protein OsI_02951 [Oryza sativa Indica Group] "]
["gene:BGIOSGA009067",13.79585,7.94948,14.04376,6.09743,18.28028,3.83194,{"v":0.000308883067064782,"d":"3.09E-04"},-1.41606812343631,"down","[R]","General function prediction only ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);; Biological Process: DNA replication (GO:0006260);; ","K07053|0|dosa:Os02t0752600-00|Os02g0752600; Similar to predicted protein.; K07053 (A)","--","--","S","Function unknown","putative PHP domain N-terminal region:PHP domain C-terminal region [Oryza sativa Japonica Group] "]
["gene:BGIOSGA000090",428.80527,142.614503050483,256.6977397052,176.168544,481.88359,143.139591,0.00231305132850997,-1.40817665720353,"down","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","Protein LATERAL ROOT PRIMORDIUM 1 GN=LRP1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_05244 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000790",91.0988,32.09593,65.3412,45.34595,116.5863,44.44878,0.00147227159838006,-1.39653256599765,"down","--","--","Cellular Component: chloroplast (GO:0009507);; ","--","--","--","S","Function unknown","hypothetical protein OsI_03805 [Oryza sativa Indica Group]"]
["gene:BGIOSGA018654",11.7946500107362,3.55703693,8.77211100079883,5.00637300000001,17.602168268,5.084039,0.00163034195250239,-1.39292110209174,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organismal development (GO:0007275);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","NAC domain-containing protein 8 GN=NAC008 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","hypothetical protein OsI_18770 [Oryza sativa Indica Group]"]
["gene:BGIOSGA027247",259.321,112.7494,316.982,180.2775,332.239,107.5477,{"v":0.0001092609908911,"d":"1.09E-04"},-1.38484135134894,"down","--","--","Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; ","--","--","--","S","Function unknown","Os08g0293100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA002112",64.0716,14.70994,59.724,35.47484,72.8889,27.5217,{"v":0.000615604759362804,"d":"6.16E-04"},-1.38445401707357,"down","--","--","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: negative regulation of catalytic activity (GO:0043086);; ","--","--","--","S","Function unknown","Os01g0220500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004292",789.362,225.551,460.878,408.431,771.506,213.486,0.00725631143848461,-1.38247439215023,"down","--","--","Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","Transcription factor bHLH3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","hypothetical protein OsI_03439 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002189",18.20191,5.56934,14.87105,6.53268,23.23121,10.59057,0.00128662596984037,-1.37295441842828,"down","[I]","Lipid transport and metabolism ","Biological Process: response to chitin (GO:0010200);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","Caffeoylshikimate esterase GN=CSE OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","hypothetical protein OsI_00779 [Oryza sativa Indica Group]"]
["gene:BGIOSGA007201",245.5877,79.45269,174.4393,85.1482,248.9889,124.2086,{"v":8.76574562685864e-05,"d":"8.77E-05"},-1.36665571191932,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","NAC domain-containing protein 21/22 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","--","--","hypothetical protein OsI_05697 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021795",14.5023,9.88159,19.8885,8.82299,26.2278,5.61838,0.00763059961013377,-1.35145216657188,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: sugar:proton symporter activity (GO:0005351);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K13783|0|osa:4340305|Os06g0179900; K13783 MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2 (A)","--","Putative glycerol-3-phosphate transporter 5 GN=At2g13100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","G","Carbohydrate transport and metabolism","Os06g0179900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA008733",200.138,106.203,158.909,125.355,265.286,37.5855,0.00940366531541028,-1.33697615504142,"down","--","--","Molecular Function: triglyceride lipase activity (GO:0004806);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: plastid (GO:0009536);; ","--","--","Phospholipase A1-Ibeta2, chloroplastic (Precursor) GN=At4g16820 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","I","Lipid transport and metabolism","lipase-like protein [Oryza sativa] "]
["gene:BGIOSGA017340",142.8195,59.6742,124.4025,60.2293,169.4427,57.7701,{"v":0.00022099571132562,"d":"2.21E-04"},-1.32628197706342,"down","[S]","Function unknown ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: proteolysis (GO:0006508);; Biological Process: autophagy (GO:0006914);; Molecular Function: methyltransferase activity (GO:0008168);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; Biological Process: protein transport (GO:0015031);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: methylation (GO:0032259);; Biological Process: negative regulation of apoptotic process (GO:0043066);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; ","--","--","Anamorsin homolog 1 {ECO:0000255|HAMAP-Rule:MF_03115} OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1","S","Function unknown","RecName: Full=Anamorsin homolog 1; AltName: Full=Fe-S cluster assembly protein DRE2 homolog 1 [Oryza sativa Indica Group] "]
["gene:BGIOSGA004952",18.0014,10.61033,25.48152,11.29254,30.2506,7.74801,0.00969063791598452,-1.31736356548257,"down","--","--","Molecular Function: calmodulin binding (GO:0005516);; Biological Process: defense response (GO:0006952);; Biological Process: response to biotic stimulus (GO:0009607);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","K08472|0|osa:4324900|Os01g0888600; K08472 mlo protein (A)","--","MLO-like protein 1 GN=T10P11.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Os01g0888600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA036314",8.54832198901657,4.7648915,8.03395735018727,3.00143749590011,13.4614082002785,3.15967067273382,0.00984889533008046,-1.31458801061762,"down","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: gene expression (GO:0010467);; Molecular Function: endoribonuclease activity, producing 5'-phosphomonoesters (GO:0016891);; Molecular Function: ion binding (GO:0043167);; Biological Process: nucleic acid metabolic process (GO:0090304);; ","K11592|3.34025e-82|obr:102717751|endoribonuclease Dicer homolog 3a-like; K11592 endoribonuclease Dicer [EC:3.1.26.-] (A)","--","Endoribonuclease Dicer homolog 3a GN=P0456E05.21 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","--","--","hypothetical protein OsI_38094 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008688",30.1088874,12.0215468097,24.27686,12.215528875,39.915170331,11.6334131,0.00332031205910055,-1.31421634379863,"down","--","--","Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: dephosphorylation (GO:0016311);; Molecular Function: nucleotide phosphatase activity (GO:0019204);; ","--","--","RNA polymerase II C-terminal domain phosphatase-like 1 GN=F17L22.130 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","hypothetical protein OsI_08218 [Oryza sativa Indica Group]"]
["gene:BGIOSGA021287",53.87273,25.20255,53.251671,25.648466,75.7929,21.96228,{"v":0.000215310197090421,"d":"2.15E-04"},-1.30709157161869,"down","[E]","Amino acid transport and metabolism ","Cellular Component: mitochondrion (GO:0005739);; Biological Process: cellular amino acid metabolic process (GO:0006520);; Biological Process: iron ion transport (GO:0006826);; Cellular Component: plastid (GO:0009536);; Biological Process: vitamin E biosynthetic process (GO:0010189);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Molecular Function: nicotianamine aminotransferase activity (GO:0033855);; ","K00815|0|osa:4340970|Os06g0345200; K00815 tyrosine aminotransferase [EC:2.6.1.5] (A)","Ubiquinone and other terpenoid-quinone biosynthesis (ko00130);; Cysteine and methionine metabolism (ko00270);; Tyrosine metabolism (ko00350);; Phenylalanine metabolism (ko00360);; Phenylalanine, tyrosine and tryptophan biosynthesis (ko00400);; Isoquinoline alkaloid biosynthesis (ko00950);; Tropane, piperidine and pyridine alkaloid biosynthesis (ko00960);; Biosynthesis of amino acids (ko01230)","Nicotianamine aminotransferase A {ECO:0000312|EMBL:BAA87052.2} OS=Hordeum vulgare (Barley) PE=1 SV=2","E","Amino acid transport and metabolism","hypothetical protein OsI_22884 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011305",68.5838,40.6844,83.2037,39.6332,103.1043,25.66493,{"v":0.000173805654403566,"d":"1.74E-04"},-1.30252947186665,"down","[S]","Function unknown ","Cellular Component: mitochondrion (GO:0005739);; ","--","--","187-kDa microtubule-associated protein AIR9 GN=AIR9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_10329 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005542",41.7823823063517,38.6606115525141,61.9178000000095,29.921216,61.6736678727578,33.44884068,0.00314205511891598,-1.29744184835742,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","Ethylene-responsive transcription factor ERF012 GN=ERF012 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","hypothetical protein OsI_09077 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003350",226.4619,119.7748,214.7456,154.5223,316.1641,63.662,{"v":0.000233472916072287,"d":"2.33E-04"},-1.29584896559484,"down","--","--","--","--","--","--","--","--","hypothetical protein OsI_01580 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000982",1663.626,748.901,1564.74,992.308,1872.701,449.0153,0.00161099065424692,-1.29570132344337,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09287|9.72927e-170|osa:4325650|Os01g0693400; K09287 RAV-like factor (A)","--","AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","hypothetical protein OsI_03358 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010483",20.9427101286,7.369985933,13.9591563253,4.7746071262,12.0091755906,6.574226,0.00969582816389972,-1.29318871306478,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: pyruvate metabolic process (GO:0006090);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: lipid biosynthetic process (GO:0008610);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: photosynthesis (GO:0015979);; Biological Process: starch biosynthetic process (GO:0019252);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: pyruvate, phosphate dikinase activity (GO:0050242);; ","K01006|0|obr:102705327|pyruvate, phosphate dikinase 2-like; K01006 pyruvate, orthophosphate dikinase [EC:2.7.9.1] (A)","Pyruvate metabolism (ko00620);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200)","Pyruvate, phosphate dikinase 2 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","C","Energy production and conversion","hypothetical protein OsI_12162 [Oryza sativa Indica Group]"]
["gene:BGIOSGA028955",1052.498,658.663,1448.292,694.504,1650.719,445.1325,0.0013192452747891,-1.29293667220774,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: response to stress (GO:0006950);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","Zinc finger A20 and AN1 domain-containing stress-associated protein 11 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os08g0504700 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026749",128.0248,130.246,202.2007,81.2176,235.6293,41.94443,0.0094039268919572,-1.28686356390055,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","K16285|7.48088e-69|osa:4345912|Os08g0492500; K16285 RING/U-box domain-containing protein (A)","--","Probable E3 ubiquitin-protein ligase XERICO GN=XERICO OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os08g0492500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA001249",308.944,108.072,192.88,153.206,378.158,103.131,0.00340040060031467,-1.28646131703307,"down","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_02777 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029283",17.7668,10.8571,22.0278,9.23399,26.4759,6.60062,{"v":0.000308440579489811,"d":"3.08E-04"},-1.28517289277679,"down","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: metabolic process (GO:0008152);; Biological Process: respiratory chain complex IV assembly (GO:0008535);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","Cytochrome b561, DM13 and DOMON domain-containing protein At5g54830 (Precursor) GN=At5g54830 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsJ_30308 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA004439",57.77719,37.51253,65.17117,30.247258,89.0172,22.18313,{"v":0.000752102655133744,"d":"7.52E-04"},-1.28442983009633,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","S","Function unknown","Os01g0743100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA007064",23.4097,8.92692,16.5808,11.2333,31.0841,10.5107,0.00813191726539667,-1.27893364898276,"down","[ER]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: 4-hydroxyphenylpyruvate dioxygenase activity (GO:0003868);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: L-phenylalanine catabolic process (GO:0006559);; Biological Process: tyrosine catabolic process (GO:0006572);; Cellular Component: plastid (GO:0009536);; Biological Process: vitamin E biosynthetic process (GO:0010189);; Biological Process: plastoquinone biosynthetic process (GO:0010236);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Molecular Function: identical protein binding (GO:0042802);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00457|1.07711e-169|sbi:SORBI_04g004560|SORBIDRAFT_04g004560, Sb04g004560; hypothetical protein; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] (A)","Ubiquinone and other terpenoid-quinone biosynthesis (ko00130);; Tyrosine metabolism (ko00350);; Phenylalanine metabolism (ko00360)","4-hydroxyphenylpyruvate dioxygenase OS=Hordeum vulgare (Barley) PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein OsI_06005 [Oryza sativa Indica Group]"]
["gene:BGIOSGA003699",24.0608,13.9601,26.7855,10.2343,33.1717,9.26705,{"v":0.000499777161734623,"d":"5.00E-04"},-1.2711555289234,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: intracellular (GO:0005622);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","O","Posttranslational modification, protein turnover, chaperones","Os01g0534800 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA017418",16.97742,14.01444,26.524,9.41485,26.2612,7.70994,0.00135214428867845,-1.27020657508339,"down","--","--","Cellular Component: plastid (GO:0009536);; Biological Process: chloroplast organization (GO:0009658);; ","--","--","Protein STAY-GREEN LIKE, chloroplastic OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","--","--","Os04g0692600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA029584",10.76856,3.56507,8.40606,3.156184,8.45194,4.50304,0.00194029965116117,-1.26910337935022,"down","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: Golgi membrane (GO:0000139);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: cellulose biosynthetic process (GO:0030244);; ","--","--","Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","S","Function unknown","hypothetical protein OsI_31766 [Oryza sativa Indica Group]"]
["gene:BGIOSGA001250",33.0409,17.6828,29.171,20.3867,50.9767,14.7484,0.00949545318958444,-1.26893238766732,"down","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_02776 [Oryza sativa Indica Group]"]
["gene:BGIOSGA019036",51.8341087057301,19.3366682740484,49.6569262158,20.12152562099,59.1104310068182,27.404377,{"v":0.000428143918082354,"d":"4.28E-04"},-1.26703955246003,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","PGR5-like protein 1A, chloroplastic (Precursor) GN=PGRL1A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","unknown protein [Oryza sativa] "]
["gene:BGIOSGA004585",29.161847133,8.411046693,17.64943528,11.102176066,31.09510583,14.63706,0.00883163815688461,-1.26248819103002,"down","--","--","Biological Process: response to light stimulus (GO:0009416);; Biological Process: response to auxin (GO:0009733);; Molecular Function: ligase activity (GO:0016874);; ","K14487|0|osa:4327043|Os01g0785400; K14487 auxin responsive GH3 gene family (A)","Plant hormone signal transduction (ko04075)","Probable indole-3-acetic acid-amido synthetase GH3.1 GN=B1070A12.26 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","Os01g0785400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA014316",19.71649,9.862931,13.92421,6.52841,21.69555,4.882899,0.00378256972936165,-1.25413436263006,"down","[G]","Carbohydrate transport and metabolism ","Molecular Function: starch synthase activity (GO:0009011);; Cellular Component: chloroplast (GO:0009507);; Biological Process: starch biosynthetic process (GO:0019252);; Molecular Function: starch binding (GO:2001070);; ","--","--","Soluble starch synthase 3, chloroplastic/amyloplastic (Precursor) GN=SS3 OS=Solanum tuberosum (Potato) PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","hypothetical protein OsI_17490 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014396",204.986,115.482,234.641,199.055,371.968,130.704,0.00660752364817407,-1.25223099005661,"down","--","--","--","--","--","--","S","Function unknown","Os04g0606200 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA037621",12.31581,7.24795,4.455364,2.969767,10.9938,5.80761,0.00708837495264857,-1.25017362311462,"down","--","--","Molecular Function: GTP binding (GO:0005525);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: Golgi organization (GO:0007030);; Biological Process: vacuole organization (GO:0007033);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: vesicle-mediated transport (GO:0016192);; ","--","--","--","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein OsI_38784 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008927",56.5633,24.23217,63.1505,29.1903,78.4572,32.746,{"v":0.000373571590899041,"d":"3.74E-04"},-1.24055294374662,"down","--","--","--","--","--","--","S","Function unknown","hypothetical protein OsI_08703 [Oryza sativa Indica Group]"]
["gene:BGIOSGA033384",166.2628,115.5034,252.203,107.0047,282.859,79.7232,{"v":0.000572848947001002,"d":"5.73E-04"},-1.23911900616401,"down","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Expansin-like A2 (Precursor) GN=OSJNBb0015I11.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_34514 [Oryza sativa Indica Group]"]
["gene:BGIOSGA029228",25.093593923,9.26918718,17.281345,8.7246025,24.89283897,9.97142,{"v":0.000632645707042252,"d":"6.33E-04"},-1.23365937852844,"down","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Cellular Component: plastid (GO:0009536);; Molecular Function: ATPase activity (GO:0016887);; ","K06185|0|osa:4347924|Os09g0572400; K06185 ATP-binding cassette, subfamily F, member 2 (A)","--","ABC transporter F family member 1 GN=MAE1.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Os09g0572400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA030245",85.5356,63.391,70.1688,38.0668,110.658,29.5182,0.00976818032031401,-1.21198242001165,"down","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to auxin (GO:0009733);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to gibberellin (GO:0009739);; Biological Process: response to salicylic acid (GO:0009751);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: response to chitin (GO:0010200);; Biological Process: response to cadmium ion (GO:0046686);; ","K09422|2.61509e-142|osa:4346379|Os09g0106700; K09422 myb proto-oncogene protein, plant (A)","--","Transcription factor MYB44 GN=K8K14.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","myb-related transcription factor-like [Oryza sativa Japonica Group] "]
["gene:BGIOSGA027623",179.718432,81.965598,151.944095,70.43233,203.24111,76.9539,0.00231067696552312,-1.20196634936295,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","NAC domain-containing protein 86 {ECO:0000312|EMBL:AED92405.1} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_27885 [Oryza sativa Indica Group]"]
["gene:BGIOSGA014839",184.4703,65.24614,137.8011,69.9512,160.8906,101.1573,0.00179458326734102,-1.19865771320095,"down","[C]","Energy production and conversion ","Molecular Function: malate synthase activity (GO:0004474);; Biological Process: glyoxylate cycle (GO:0006097);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Cellular Component: glyoxysome (GO:0009514);; ","K01638|0|dosa:Os04t0486950-01|Os04g0486950; Similar to Malate synthase.; K01638 malate synthase [EC:2.3.3.9] (A)","Pyruvate metabolism (ko00620);; Glyoxylate and dicarboxylate metabolism (ko00630);; Carbon metabolism (ko01200)","Malate synthase {ECO:0000255|RuleBase:RU000555} OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","C","Energy production and conversion","RecName: Full=Malate synthase [Oryza sativa Japonica Group] "]
["gene:BGIOSGA004937",21.35211,9.71942,18.24172,10.07215,29.127,9.78909,0.00306994551683055,-1.19433927365715,"down","[R]","General function prediction only ","Cellular Component: plastid (GO:0009536);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","R","General function prediction only","hypothetical protein OsI_04701 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012135",191.20905031,68.890433475238,139.329184825,64.7242,143.63937,71.5845221,0.0017178863214256,-1.18367602543482,"down","--","--","--","--","--","--","--","--","hypothetical protein OsI_10558 [Oryza sativa Indica Group]"]
["gene:BGIOSGA025960",11.98830514091,6.7602646646,12.4480575854,5.991815063,13.9401381574,3.859864866,0.00593180859040343,-1.18248137032214,"down","--","--","Cellular Component: plant-type vacuole (GO:0000325);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","P","Inorganic ion transport and metabolism","hypothetical protein OsI_26513 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011009",40.3715,26.7249,50.8253,14.617,40.1131,16.8113,{"v":0.000796664468941729,"d":"7.97E-04"},-1.1786231359731,"down","--","--","Molecular Function: 1-phosphatidylinositol binding (GO:0005545);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: clathrin coat (GO:0030118);; Molecular Function: clathrin binding (GO:0030276);; Biological Process: clathrin coat assembly (GO:0048268);; ","--","--","Putative clathrin assembly protein At2g25430 GN=At2g25430 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","F","Nucleotide transport and metabolism","Os03g0275500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA014108",398.8945,319.384051,476.967427,253.862954,637.59799,164.6996,0.00241551606057687,-1.1776808059798,"down","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","hypothetical protein OsI_17890 [Oryza sativa Indica Group]"]
["gene:BGIOSGA005228",107.3588,42.30746,84.8937,37.79019,70.92437,48.28886,0.00169155405154664,-1.16212806757374,"down","--","--","Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","S","Function unknown","hypothetical protein OsI_05308 [Oryza sativa Indica Group]"]
["gene:BGIOSGA032805",10.56895,4.71688,9.22865,4.07432,11.99404,4.875834634,0.00198850905625803,-1.16197622289771,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plastid (GO:0009536);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) GN=At3g47570 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_33296 [Oryza sativa Indica Group]"]
["gene:BGIOSGA004611",406.626,194.61,470.464,326.74,535.103,156.463,0.00235590408959637,-1.15973593536106,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: plastid (GO:0009536);; ","--","--","Ethylene-responsive transcription factor 4 GN=At3g15210 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","Os01g0797600 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA035534",35.55399,24.616400924179,44.393458,13.56890228069,42.49210192734,15.622793,0.00137680973374166,-1.14955275794015,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","Transcription factor bHLH47 GN=F1P2.190 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein OsI_36658 [Oryza sativa Indica Group]"]
["gene:BGIOSGA013608",28.0457,21.7059,40.6181,20.9719,48.6604,14.7554,0.00443801869614476,-1.14684976863314,"down","--","--","--","--","--","--","--","--","Os03g0760900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA023865",60.66321,40.915972,81.832628,40.57340692979,93.056772,29.82970483767,0.00137680973374166,-1.14536496108176,"down","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; ","K09422|7.04351e-111|osa:4343988|Os07g0629000; K09422 myb proto-oncogene protein, plant (A)","--","Myb-related protein 306 OS=Antirrhinum majus (Garden snapdragon) PE=2 SV=1","K","Transcription","Os07g0629000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA001923",42.6269073004089,17.91048909064,34.5086025047899,14.5271545273,41.927120000258,19.4819026907853,0.00147227159838006,-1.14067401292054,"down","[E]","Amino acid transport and metabolism ","Molecular Function: hydroxymethylglutaryl-CoA lyase activity (GO:0004419);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; ","K01640|0|osa:4326266|Os01g0269000; K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] (A)","Synthesis and degradation of ketone bodies (ko00072);; Valine, leucine and isoleucine degradation (ko00280);; Butanoate metabolism (ko00650);; Peroxisome (ko04146)","Hydroxymethylglutaryl-CoA lyase, mitochondrial GN=HMGCL OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","E","Amino acid transport and metabolism","hypothetical protein OsI_01328 [Oryza sativa Indica Group]"]
["gene:BGIOSGA022875",30.5583,9.56395,21.8035,15.35343,27.2318,13.46233,0.00201948010271398,-1.13499488764535,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleus (GO:0005634);; Biological Process: positive regulation of organelle organization (GO:0010638);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","Probable transcription factor GLK1 GN=OSJNBa0031J07.13 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","hypothetical protein OsI_22886 [Oryza sativa Indica Group]"]
["Rice_newGene_3092",191.8293,65.234,133.9119,64.4492,128.9509,79.1696,0.00156091107621993,-1.13254018397685,"down","--","--","--","--","--","--","--","--","--"]
["gene:BGIOSGA009184",170.192,94.0794,165.867,102.75,196.935,65.4398,0.00245115903605986,-1.12927864890599,"down","[MG]","--","Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: nucleotide-sugar metabolic process (GO:0009225);; Molecular Function: UDP-glucuronate 4-epimerase activity (GO:0050378);; Molecular Function: coenzyme binding (GO:0050662);; ","K08679|0|osa:4330975|Os02g0791500; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] (A)","Starch and sucrose metabolism (ko00500);; Amino sugar and nucleotide sugar metabolism (ko00520)","UDP-glucuronate 4-epimerase 1 GN=F17I23.220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","Os02g0791500 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA014341",55.2285,25.5533,54.8884,37.0074,59.6468,29.9482,0.00815681210584408,-1.12507799528652,"down","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14488|4.79358e-37|osa:9267097|Os04g0617050; K14488 SAUR family protein (A)","Plant hormone signal transduction (ko04075)","Auxin-induced protein 6B OS=Glycine max (Soybean) PE=2 SV=1","S","Function unknown","Os04g0617050 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA018112",61.66669241,29.03425146,51.86407895,31.0349700005311,72.149109748629,22.81720965,0.00168906363767886,-1.12384690066579,"down","--","--","Molecular Function: ATP transmembrane transporter activity (GO:0005347);; Cellular Component: peroxisome (GO:0005777);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Molecular Function: ADP transmembrane transporter activity (GO:0015217);; Biological Process: ADP transport (GO:0015866);; Biological Process: ATP transport (GO:0015867);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: indolebutyric acid metabolic process (GO:0080024);; Biological Process: seedling development (GO:0090351);; ","--","--","Peroxisomal adenine nucleotide carrier 1 GN=PNC1 OS=Glycine max (Soybean) PE=2 SV=1","C","Energy production and conversion","hypothetical protein OsI_19846 [Oryza sativa Indica Group]"]
["gene:BGIOSGA000502",22.87401,11.425902,18.5431,15.07629,25.4876,9.58937,0.00467390148994625,-1.12377163779515,"down","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; ","--","--","--","--","--","hypothetical protein OsI_04401 [Oryza sativa Indica Group]"]
["gene:BGIOSGA008996",149.8632,83.4927,172.6923,116.2521,170.6532,62.4571,0.0020713262352317,-1.1212272924768,"down","[LR]","--","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","Nudix hydrolase 21, chloroplastic (Precursor) GN=T9L24.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_08834 [Oryza sativa Indica Group]"]
["gene:BGIOSGA010546",103.507,45.9364,94.4997,66.6106,130.567,56.7363,0.00820285095222561,-1.12045894885977,"down","--","--","--","--","--","Protein ELF4-LIKE 3 GN=F18P14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","Os03g0410300 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013387",25.5489,14.8354,26.059,13.5015,33.5144,10.2259,0.00191729579481962,-1.11977095787064,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","Zinc finger CCCH domain-containing protein 24 GN=OSJNBb0017F17.19 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","unknown protein [Oryza sativa Japonica Group] "]
["gene:BGIOSGA026829",35.2177,18.1739,34.4156,28.9402,48.2708,11.8207,0.00469940597380362,-1.11774558528672,"down","[K]","Transcription ","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: asymmetric cell division (GO:0008356);; Biological Process: response to heat (GO:0009408);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|1.39379e-173|dosa:Os08t0471000-00|Os08g0471000, HEAT_STRESS_TRANSCRIPTION_FACTOR_B4A, HSFB4A; Similar to cDNA, clone: J065120N14, full insert sequence.; K09419 heat shock transcription factor, other eukaryote (A)","--","Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","K","Transcription","hypothetical protein OsI_29557 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012368",15.64119,12.20172225,17.89053817,8.99905,22.50825718,6.771979,0.00205828476499133,-1.11603281813727,"down","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity (GO:0003918);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: chromosome (GO:0005694);; Biological Process: DNA topological change (GO:0006265);; Cellular Component: plastid (GO:0009536);; Biological Process: epidermal cell fate specification (GO:0009957);; Molecular Function: identical protein binding (GO:0042802);; Molecular Function: metal ion binding (GO:0046872);; ","K10878|0|osa:4332470|Os03g0284800; K10878 meiotic recombination protein SPO11 (A)","--","Topoisomerase 6 subunit A3 GN=OSJNBa0013D02.18 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","L","Replication, recombination and repair","hypothetical protein OsI_11065 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016468",34.73507,19.87983,35.829674,16.86907,51.11052,15.92710355438,0.00207307298454133,-1.10492280824738,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","Polyadenylate-binding protein-interacting protein 7 GN=CID7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","L","Replication, recombination and repair","Os04g0442100 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA036884",46.8686,19.5364,28.3366,22.5153,38.9769,17.3469,0.00768486936433276,-1.10322526864757,"down","--","--","Molecular Function: N-acetyltransferase activity (GO:0008080);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to ethylene (GO:0009723);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: unidimensional cell growth (GO:0009826);; ","--","--","Probable N-acetyltransferase HLS1-like GN=At2g23060 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein OsI_37224 [Oryza sativa Indica Group]"]
["Rice_newGene_648",800.573761,232.462074,617.026284,296.17200827402,546.32652,312.31700652126,0.00800041183477549,-1.09964610685913,"down","--","--","--","--","--","--","--","--","hypothetical protein LOC_Os11g04409 [Oryza sativa Japonica Group]"]
["gene:BGIOSGA023694",385.152,323.715,480.882,272.782,571.558,128.25,0.00998956548465447,-1.08790487759503,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to ethylene (GO:0009723);; Biological Process: defense response to bacterium (GO:0042742);; ","K14514|0|osa:4344331|Os07g0685700; K14514 ethylene-insensitive protein 3 (A)","Plant hormone signal transduction (ko04075)","ETHYLENE INSENSITIVE 3-like 1 protein GN=EIL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","hypothetical protein OsI_27382 [Oryza sativa Indica Group]"]
["gene:BGIOSGA026956",56.1268,28.89417,54.7687,30.45052,61.6496,26.32346,0.00501893627869273,-1.07832678146007,"down","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: membrane (GO:0016020);; ","--","--","--","S","Function unknown","hypothetical protein OsI_29298 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011991",26.70706,18.001379,28.69976,12.234317,38.513424,11.88260668899,0.00492264973444797,-1.07056610999725,"down","--","--","Molecular Function: phosphoric ester hydrolase activity (GO:0042578);; ","--","--","Phosphoinositide phosphatase SAC2 GN=SAC2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein OsI_10271 [Oryza sativa Indica Group]"]
["gene:BGIOSGA016435",62.9279595138,45.2425602695,79.1743810343,33.9520852084,92.7760273706,39.208376,0.00360318866064292,-1.05734306898781,"down","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","S","Function unknown","hypothetical protein OsI_15933 [Oryza sativa Indica Group]"]
["gene:BGIOSGA011511",36.96269,27.9388700017514,36.18766,16.04436,41.285670604091,12.794270551203,0.00351371199874152,-1.05567838202949,"down","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: ligase activity (GO:0016874);; ","--","--","Probable acyl-activating enzyme 21 GN=AEE21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","--","--","hypothetical protein OsI_09876 [Oryza sativa Indica Group] "]
["gene:BGIOSGA018734",108.2750092992,86.1753183758,170.895034541,65.6544914218,161.9380231916,59.734685,0.00653415980208012,-1.05176063440751,"down","[OC]","--","Cellular Component: cytoplasm (GO:0005737);; Biological Process: glycerol ether metabolic process (GO:0006662);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: electron transport chain (GO:0022900);; Biological Process: cell redox homeostasis (GO:0045454);; ","K03671|6.84207e-94|osa:4337927|Os05g0169000; K03671 thioredoxin 1 (A)","--","Thioredoxin H4-2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Os05g0169000 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA013520",131.938,72.6238,129.544,92.8536,144.574,54.3008,0.00396240778832887,-1.04751957997409,"down","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","--","--","hypothetical protein OsI_13430 [Oryza sativa Indica Group]"]
["gene:BGIOSGA012316",82.0847,44.7543,84.0542,48.0376,102.458,48.4168,0.00408193354130518,-1.04639454078375,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","E3 ubiquitin-protein ligase RING1 GN=RING1 OS=Gossypium hirsutum (Upland cotton) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_10929 [Oryza sativa Indica Group]"]
["gene:BGIOSGA002347",207.376512610505,90.4693917004696,187.51677731233,86.7756426710615,170.6037931643,92.3001769376003,0.00958135416212909,-1.03149167154549,"down","[I]","Lipid transport and metabolism ","Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995);; Molecular Function: acyl-CoA oxidase activity (GO:0003997);; Cellular Component: peroxisome (GO:0005777);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; ","K00232|0|osa:4324062|Os01g0159400; K00232 acyl-CoA oxidase [EC:1.3.3.6] (A)","Fatty acid degradation (ko00071);; alpha-Linolenic acid metabolism (ko00592);; Biosynthesis of unsaturated fatty acids (ko01040);; Fatty acid metabolism (ko01212);; Peroxisome (ko04146)","Acyl-coenzyme A oxidase 4, peroxisomal GN=ACX4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","Os01g0159400 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA016812",79.6018,70.1396,99.43,51.9141,111.09,33.192,0.00491036275202372,-1.02734938408575,"down","--","--","Biological Process: carbohydrate biosynthetic process (GO:0016051);; Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity (GO:0047262);; ","--","--","Probable galacturonosyltransferase-like 3 GN=GATL3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","Os04g0530900 [Oryza sativa Japonica Group] "]
["gene:BGIOSGA011579",74.2446,63.6419,92.8945,31.46813306,97.2325,23.6594000411811,0.00574371698822899,-1.01934212694622,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: integral component of membrane (GO:0016021);; ","K17794|1.78854e-27|osa:4331390|Os03g0114900; K17794 mitochondrial import inner membrane translocase subunit TIM23 (A)","--","Mitochondrial import inner membrane translocase subunit TIM23-1 GN=TIM23-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein OsI_09723 [Oryza sativa Indica Group]"]
["gene:BGIOSGA023416",30.3842,13.54223,23.53762,11.8796190111,30.518762,14.805728,0.00583711941022393,-1.01237215061794,"down","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","Protein STRUBBELIG-RECEPTOR FAMILY 3 (Precursor) GN=SRF3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein OsI_23995 [Oryza sativa Indica Group]"]