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["Additional File 1. Log2TPM data for each gene (GeneID) in the V3 annotation. Additional columns are individual samples for BOD and RNO followed by a °Brix value and a replicate number (e.g. R1). Final two columns are average differences between the high and low °Brix samples for each location."]
["GeneID","BOD19_5R1","BOD19_5R2","BOD19_5R3","BOD20_5R1","BOD20_5R2","BOD20_5R3","BOD21_5R1","BOD21_5R2","BOD21_5R3","BOD22_5R1","BOD22_5R2","BOD22_5R3","RNO20R1","RNO20R2","RNO20R3","RNO22R1","RNO22R2","RNO22R3","RNO24R1","RNO24R2","RNO24R3","RNO26R1","RNO26R2","RNO26R3","BOD.difference","RNO.difference"]
["Vitvi00g00338",1.85463044136574,0.801320038512703,1.12856365133209,1.65736312533386,0.782221549245865,1.3121968042448,1.1850115766812,1.29149441984032,0,1.32158643441173,1.7179360280107,2.10983721967288,2.60323341028482,0,0,0,0,1.27254444890224,0,0.733955728768048,2.05817868658165,1.18970286515055,1.05026683025989,1.52227720046163,{"$f":"AVERAGE(K3:M3)-AVERAGE(B3:D3)","v":0.45494851696159255},{"$f":"AVERAGE(W3:Y3)-AVERAGE(N3:P3)","v":0.3863378285290835}]
["Vitvi00g00339",0,0,0,0,0,0.0374116327500413,0,0,0,0,0,0,0,0,0,0,0.0328370405121258,0.216233890970377,0.0413842127285189,0,0,0,0,0,{"$f":"AVERAGE(K4:M4)-AVERAGE(B4:D4)","v":0},{"$f":"AVERAGE(W4:Y4)-AVERAGE(N4:P4)","v":0}]
["Vitvi00g00340",0.68475163096619,0.619442077980425,0,0.301387341778641,0.453699462775985,0.192366958845383,0.67195316323055,0.890811098579911,0.560162704038092,1.10357620494656,0.315818837853772,0.663765573039584,0.394579228605447,0.636826243138766,0.884114310906782,1.10545343671337,1.14060075437227,0.935659658450342,0.762382033993798,0.858926102524727,0.313238163939463,0.971879252218695,0.552950218638964,0.735646675627152,0.25965563563110045,0.11498545461127208]
["Vitvi00g00341",0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0108254011848176,0,0,0,0,0,0,0,0,0]
["Vitvi00g00342",0,0.357636044730303,0,0,0,0,0.145673756910513,0.675235448692867,0.1247829216663,0.380677902930703,0.202520907027445,0.195647693958647,0,0,0.651091554272459,0.197052515614503,0.286447509415449,0,0.175884671605304,0.326320423766109,0,0.488490979046153,0,0,0.14040348639549732,-0.054200191742102]
["Vitvi00g00343",0,2.12716100481341,0.847194937972805,2.27869602243622,1.55173707274769,0,0,2.04651998962577,0,0,0,0,2.85389509216255,0,1.92071368902181,2.70225391441455,0,1.69712070713838,2.66483029789332,{"v":9.46150603971766E-6,"d":"9.46E-06"},2.0665356993219,1.30528513170903,0,2.58442595935883,-0.9914519809287384,-0.2949658967055002]
["Vitvi00g00441",0,0.20807542162669,0,0.536013633921402,1.5273455290402,0,0.125712423187453,0,0,{"v":2.63299556080869e-06,"d":"2.63E-06"},0,0,0,1.06663913462853,0.455272600738002,0,1.19238487549113,0,0,0,0,0.566684569451134,0,0,-0.0693575962103764,-0.31840905530513264]
["Vitvi00g00442",1.35103794671498,1.2333932015307,1.1453064224392,1.5243186297391,1.27524834645493,1.12911691087126,1.4921853495769,1.38073298012658,1.40631407326422,1.43996652677267,1.61022053535193,1.41471188276809,0.641241819888995,0.768832736272598,1.36213857977338,1.16651837392326,0.654021253546993,1.59207119413161,1.32524706292276,1.25512195082102,1.24995942325426,1.04174365806961,0.569218950460506,1.07006840772983,0.24505379140260342,-0.030394039891675773]
["Vitvi00g00443",1.78781630617499,0.725454099133885,0.525646304016297,0.759862420364444,0.665943954351425,0,0.449990365737606,1.36340417408898,0,0,1.44699566970661,1.70678078446834,0.652516090805498,1.73511451673993,1.94704509847425,0.724218185778321,1.32906050129242,0.736926523085008,1.3211389844373,0,0.705084992014685,0.394328593870088,1.44437981485055,1.08020321409777,0.038286581616592485,-0.47192136106709004]
["Vitvi00g00444",4.68668612563877E-4,2.17603491646557,2.34104931995322,1.76407992611103,1.98013115204551,1.92777064960845,2.27279139103373,1.71495439897331,1.81141676408689,2.11221768210955,2.01300731392476,1.33723081830248,1.70271653019968,0.936515284428094,1.11140935229929,2.01310695496311,2.06112224482289,2.09327264268953,1.48034281437198,2.28077572436354,2.15608443314828,2.82093146731346,1.98229315325872,2.09526679993571,0.3149676364351457,1.0492834178602755]
["Vitvi00g00446",0,0,0,0,0,0,1.61017163191365,1.09760423087424,0.977691205017657,0,1.42542477509898,0,0,0,0,0,0,1.58575054473096,0,0,0,0,0,0,0.47514159169965997,0]
["Vitvi00g00447",0.238381868583746,0,0.194628306416518,0,0.333883486913255,0,0.388833353698766,1.24784594257182,0,0.252483417332613,0.926731792565097,0.215757503482472,0.230396114687864,0.562836472258388,0.360291566417527,0,0,0.652100592381949,0.268785368586542,0.328993286546722,0,0,0.487493541712754,0,0.32065417945997265,-0.222010203883675]
["Vitvi00g00448",0,3.35539871041458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3997999105584,0,0,0,-1.1184662368048601,0]
["Vitvi00g00449",0,0,0.53337005599132,0,0.595780897494877,0,0,0.658936035541907,0,0,0,0.596419807399575,0,0,0,0,0,0,0,0,0,0,0.844293217826815,0,0.021016583802751676,0.28143107260893835]
["Vitvi00g00450",0.413114851542397,0.717340019275081,1.16896538861411,1.40938492862129,0.44105990151741,0.7744230924823,0.946436546466375,1.18496482759063,0.412585746662403,0.895357235725161,0.977949567441059,0.800200331053777,0.454953040138781,1.01902105103959,1.10240707524662,0.338414209944631,1.24289025800648,0.368214853873615,1.24438552788959,0.543579225520545,0.405939757780432,1.18648225215063,0.830596879741282,1.54801688641949,0.12469562492946973,0.32957161729547013]
["Vitvi00g00491",0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["Vitvi00g00492",1.13380717273194,0.925079851150138,1.35309351530465,1.19370980981319,1.13403800517134,1.61386944179626,1.30696726519764,1.16823789105948,1.51697481425806,1.76371512387914,1.57951921638577,1.39825622619793,0.527563668607936,1.20660236988809,1.58267431902605,1.17217288193021,0.0105192649573532,0.766294995837203,1.70676756359751,0.959201732682689,1.09924936616319,1.7960224968281,0.156047289051202,1.75636938358439,0.4431700090920374,0.13053293731387217]
["Vitvi00g00493",0,0.726075056285775,0,0.877691166411791,0,0,0,0,0.772562358387518,0,0,0,0.829244192371148,0,0,0,0,0,0.924151080275134,0,0,0,0,1.26667230426567,-0.24202501876192498,0.14580937063150734]
["Vitvi00g00494",0.616017424278644,0.390021614183828,0.668565607878717,0.537064516713963,0.989625313313115,0.491879942870183,1.07150672754988,0.273276305132607,0.817497322506901,0.439658828022786,0.306797764750777,0.554599520978418,1.13978272817931,1.39379109206166,0.550587693275975,0.217417775062462,0.53121070405119,0.44363550758583,0,0.923216005620515,0,0.57623038024924,0.870102599359676,1.25139990576055,-0.12451617752973593,-0.12880954271582634]
["Vitvi00g00495",2.09325126807291,0,0.584908193758631,0.770325024417805,1.08836041222937,1.42961630709868,1.89421116481777,0,1.85113785768705,0.62388144529357,1.60157977314878,1.66835954728716,0,0,1.57346668911149,1.9330380266842,0.864446249961608,2.00343462508629,1.59640807555442,2.05957857792713,1.09569916410822,1.31164464323862,0.912369427736735,1.68289538525454,0.40522043463265633,0.777814255706135]
["Vitvi00g00496",0.614406422647668,0.407908634827025,1.14429895869952,1.56896199024078,1.03780363175628,1.28015634454983,1.64496990570842,1.55873822818798,1.41547310235926,1.11418011284308,0.871665887829014,1.79713095540987,1.0013291622816,1.08911067699796,0.928449158302596,0.556176661642074,1.08974990855185,0.567794239158996,1.04177790069798,1.40189668409927,1.19652576088279,1.49972646810655,1.40111079066539,1.82072958628009,0.5387876466359169,0.5675592824899582]
["Vitvi00g00542",0,0,0,0,0,0,0,0,0,1.03073570059819,0,1.10697472619047,0,0,0,0,0,0,0,0,0,0,0,0,0.7125701422628867,0]
["Vitvi00g00543",1.31125209421129,0.985762927054097,1.55485647245927,1.3548447324679,1.35011541213719,1.05113788208838,1.63434435489158,1.94926450302552,2.02351939477264,2.55937585737493,2.42694175549867,3.10314403519063,1.02804301646515,1.76399900059785,0.9545872494379,0.853708831679042,1.74341814378268,0,1.20665119481093,1.80402221112661,2.2507184356182,2.06433875215499,1.39730301324289,1.02381011093217,1.4125300514465244,0.2462742032763836]
["Vitvi00g00544",0.310018399265941,0.425069664311085,0.812396235738745,0,0,0.947371345941634,0.335658656552039,1.17676646341189,0.691190809412665,1.07548725624039,0.603594053839322,0.510865567861645,0.879019515396385,0.469341684590128,0,0,0,0,0.835164932239193,0,0,0.571841073698225,0.540146145145974,0.656816807407188,0.21415419287519544,0.14014760875495796]
["Vitvi00g00545",0.248522185283289,0,0.227174421128068,0,0.253149392467,0,0.245639294863547,0,0.24192715418203,0.253178100548654,0,0,0,0,0,0,0,0,0.311857747495348,0.201095959396181,0,0,0,0.797449860199239,-0.0741728352875677,0.265816620066413]
["Vitvi00g00547",0,0,0,0,0,0,0,0,0,0,0,1.64207514658103,0,0,0,0,0,0,0,0,0,0,0,0,0.5473583821936766,0]
["Vitvi00g00580",2.65100840588746,2.79526724346053,2.73429807750617,2.6774044808446,2.65322979490118,2.55989416014362,2.21960170351539,3.37650039009051,2.26233385161569,2.59261764666745,2.99037628606557,3.90564921909384,3.00297433844677,2.03585728996569,1.46572259686315,1.63668420149069,2.93684060290805,2.56829494382432,3.63405109121072,2.78094535387957,2.37485202410848,3.07847903727195,2.8108344537343,3.45519592205925,0.43602314165756706,0.9466517292632965]
["Vitvi00g00581",0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83821305516675,0,0,0,0,0,0,0,0]
["Vitvi00g00582",0.27063092522938,0,0.3781353739287,0.186929582733855,0,0.149895979420302,0,0.162899460569674,0.544764687357479,0,0.336249392649586,0,0,0,0,0,0,0,0,0,0.291841950154454,0,0.231926766269532,0,-0.10417230216949802,0.077308922089844]
["Vitvi00g00610",1.57684902697218,1.60170996761943,0.863702202143946,0.978930367180403,1.52851706769442,1.11488355012265,0.901042385923921,1.02325016488937,0.894843702015029,1.08531037994664,1.54314807611999,1.30448427264123,1.85662221694317,1.05846482012022,0.887160861666776,0.878160827482784,1.02436872082422,0,1.69324460030488,1.11830837630521,0.9793205103301,1.55186456082355,0.807102028605347,0,-0.036439489342565246,-0.48109376976708984]
["Vitvi00g00613",0,0,1.18905468322878,0.620251013245953,0,0,0.941723470477494,1.36137857814795,0.931852736091808,1.52805178194335,1.67062925318487,1.82287017903647,0,0,0,0,0.697855728858684,0,0,0,0.871483279759798,0.454347348163835,0.747506523651252,0,1.2774988436453034,0.4006179572716957]
["Vitvi00g00614",1.90685755633375,1.04525761963668,1.20527291910436,0.933338859327609,1.24473934777185,2.36985555751599,1.70662309835142,1.74413102116841,1.85842741477357,1.51980781491459,2.20635120892715,1.03738571960729,2.64671976834012,1.5957502203861,1.67512838956418,1.59302241904837,1.2577179294884,2.28228130917475,1.01824743666496,1.56996188596061,1.02153909679997,1.62245927718891,1.17676178929833,2.03665856554676,0.20205221612474666,-0.36057291541879977]
["Vitvi00g00615",1.24675183872338,0.695954662192709,1.55046960700583,1.01543983044351,1.21159066133083,1.86225557296095,1.27692418704224,1.44687651505936,1.4060763439527,1.55983235442341,1.68292088086881,1.0115469857643,2.16112427444312,1.21827967165275,0.998820765499636,1.196548322387,1.07598270240219,1.55450113238341,1.15184418742122,1.17276347745221,0.924146641972137,1.0602041220981,1.14652771378117,1.33263655734631,0.2537080377115337,-0.2796187727899755]
["Vitvi00g00616",2.14655057555631,2.56254365165853,2.49315591059529,2.44796141794962,2.64607371736779,2.35082002710849,2.07471008897129,2.74304499642732,2.12456193723292,2.2507785035393,2.51127830426703,2.50208883160888,2.24156381522579,2.06557934670534,2.14782044380379,1.89054081992627,1.95213055761115,1.85793638422453,1.96871356838869,2.1521802734817,2.55758604697894,2.0563475796545,2.20055115242745,1.70374744362066,0.02063183386835954,-0.1647724766774361]
["Vitvi00g00638",1.022885507073,2.07722309329613,1.57345526444049,1.43535823804111,0,2.50000506200314,2.06209133758957,1.13922913905017,1.62619563200368,0,0,0,1.29202700006931,0,2.20507463561563,0,0,1.76044844186031,1.69156408609791,0,1.86828317473007,1.1372275619587,1.60826104167069,1.86027800364834,-1.5578546216032068,0.3695549905309299]
["Vitvi00g00639",0.273776690041181,0,0,0.629473966153497,0,0,0.149101431833814,0.311393198867092,0.14997069587201,0,0.743403482412895,0.167724550218117,0,0,0,0,0,0,0,0,0,0,0.222790171668115,0,0.2124504475299437,0.07426339055603833]
["Vitvi00g00640",0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["Vitvi00g00663",1.28452221008499,1.66730307922193,1.03087202470069,1.27491658967717,1.89387848575926,1.66901735514739,1.49934784663227,1.59872350673029,1.21028877724179,1.51746995218905,1.72630371831369,1.7796419361922,0.717623860474651,1.37080227488723,0.697327928548612,1.77529611133185,0.748793859241968,1.17913293046845,0.527716260831115,1.01330104068542,1.2885416823712,1.18670584041304,1.40891331241645,0.765133871169166,0.34690609756244317,0.19166632002938755]
["Vitvi00g00664",0,2.02470191368378,0,2.28793231727374,2.61091931083249,1.61344165087893,1.79206836632715,2.50366098798303,0,0,1.51877105406216,1.00277829664549,1.67422618558802,1.35419711675666,1.52689834996656,3.00248918186863,2.0168510313577,0,1.40821076677369,2.13316514171641,1.64235996202006,0,1.39895312833475,0,0.16561581234128997,-1.0521228413254966]
["Vitvi00g00665",0.749012117854825,0.755617902477611,1.65040045152045,0.968965860055982,0.995334225786582,1.57614532750502,1.25796439623197,0.628088851329713,0.543150215444638,0,1.07748044699499,1.03672078738712,1.39798639206709,1.52277157242975,0.914203698522308,1.62936923314979,0.783888679263173,0.926496546118121,1.5018223361015,1.38351982514647,0.996777521309332,2.12851676308529,1.76434186121907,2.31233854499576,-0.34694307915692535,0.7900785020936574]
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