This simulation program can be called by the command-line mode and the arguments are:

Fst.exe APP id v L k C Sc Fis Fst Nf Nm No nrfreq nrep

Description of arguments:
APP	should be 'app1', the folder to save the results
id	positive integer, results are saved in id.txt
v	ploidy level
L	number of loci
k	number of alleles
C	number of regions
Sc	number of subpopulation in each region
Fis	Fis
Fst	Fst
Nf	Number of fathers
Nm	Number of mothers each father mate
No	Number of offspring each pair of parents produced
nrfreq	a priori probability of nonrelatives or independent suboppulations
nrep	number of replications

The results are saved in id.txt, which are
id v L K C Sc Fis Fst NF NM NO nrfreq Nrep  %identical to arguments
fis_Wright fis_Nei fis_WC fis_Corr  %fis for previous estimators and multi-locus corrected estimates
fst_Wright fst_Nei fst_WC fst_Corr  %fst for previous estimators and multi-locus corrected estimates
tfis_Wright tfis_Nei tfis_WC        %theoretical value of previous fis estimates with dependent samples
tfst_Wright tfst_Nei tfst_WC        %theoretical value of previous fst estimates with dependent samples
fis_Huang fst_Huang                 %locus specific correction
fst_Hedrick fst_Hedrick2            %Hedrick's G'st estimates in multilocus weighting scheme and single locus weighting scheme

All arguments (arguments.txt) can be pasted into the textbox in GUI mode, then click the 'RunCommand' button.
The program will launch several processes (the same as #cores) to calculate the results. 
After the results are calculated, click 'Stat' button, and the results will be summaried into 'app1.txt'.
The first 13 columns are identical to the id.txt, the following columns are the mean and variance of each fis and fst.
