{"text_format":"3","workbook":"xlsx","n_sheets":3,"sheets":["Sheet1","Sheet2","Sheet3"],"read":"whole","date_system":"1900"}

{"sheet":"Sheet1","index":0,"n_rows":4489,"n_cols":10,"rows_kept":4489}
["Contig_Id","Feature_Id","Type","Location","Start","Stop","Strand","Name","Figfam","Function"]
["scaffold100|size793","fig|6666666.156949.peg.1","peg","scaffold100|size793_80_349",80,349,"+","hypothetical protein","NA","NA"]
["scaffold101|size793","fig|6666666.156949.rna.2","rna","scaffold101|size793_793_1",793,1,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold101|size793","fig|6666666.156949.rna.1","rna","scaffold101|size793_793_1",793,1,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold104|size787","fig|6666666.156949.peg.2","peg","scaffold104|size787_62_574",62,574,"+","Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)","FIG00043765","isu;Trehalose_Biosynthesis isu;Trehalose_Uptake_and_Utilization idu(1);Maltose_and_Maltodextrin_Utilization"]
["scaffold10|size16020","fig|6666666.156949.peg.3","peg","scaffold10|size16020_103_3930",103,3930,"+","Bacitracin synthetase 3 (BA3) [Includes: ATP-dependent isoleucine adenylase (IleA) (Isoleucine activase); ATP-dependent D-phenylalanine adenylase (D-PheA) (D-phenylalanine activase); ATP-dependent histidine adenylase (HisA) (Histidine activase); ATP-dependent D-aspartate adenylase (D-AspA) (D-aspartate activase); ATP-dependent asparagine adenylase (AsnA) (Asparagine activase); Aspartate racemase (EC 5.1.1.13); Phenylalanine racemase [ATP hydrolyzing] (EC 5.1.1.11)]","FIG01954418","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"]
["scaffold10|size16020","fig|6666666.156949.peg.4","peg","scaffold10|size16020_3955_11637",3955,11637,"+","Bacitracin synthetase 3 (BA3) [Includes: ATP-dependent isoleucine adenylase (IleA) (Isoleucine activase); ATP-dependent D-phenylalanine adenylase (D-PheA) (D-phenylalanine activase); ATP-dependent histidine adenylase (HisA) (Histidine activase); ATP-dependent D-aspartate adenylase (D-AspA) (D-aspartate activase); ATP-dependent asparagine adenylase (AsnA) (Asparagine activase); Aspartate racemase (EC 5.1.1.13); Phenylalanine racemase [ATP hydrolyzing] (EC 5.1.1.11)]","FIG01954418","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"]
["scaffold10|size16020","fig|6666666.156949.peg.5","peg","scaffold10|size16020_11654_13393",11654,13393,"+","FIG01239039: hypothetical protein","FIG01239036","NA"]
["scaffold10|size16020","fig|6666666.156949.peg.6","peg","scaffold10|size16020_13411_14214",13411,14214,"+","Non-ribosomal peptide synthetase","NA","NA"]
["scaffold110|size767","fig|6666666.156949.peg.7","peg","scaffold110|size767_18_758",18,758,"+","hypothetical protein","NA","NA"]
["scaffold115|size749","fig|6666666.156949.rna.3","rna","scaffold115|size749_432_504",432,504,"+","tRNA-His-GTG","NA","NA"]
["scaffold117|size745","fig|6666666.156949.peg.8","peg","scaffold117|size745_17_634",17,634,"+","TldD protein, part of TldE/TldD proteolytic complex","FIG00002674","isu;CBSS-316057.3.peg.563 isu;CBSS-354.1.peg.2917"]
["scaffold11|size12789","fig|6666666.156949.peg.9","peg","scaffold11|size12789_534_154",534,154,"-","FIG01247396: hypothetical protein","FIG01247395","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.10","peg","scaffold11|size12789_833_1369",833,1369,"+","FIG01233227: hypothetical protein","FIG01534210","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.11","peg","scaffold11|size12789_2105_1548",2105,1548,"-","Transcriptional regulator, PadR family","FIG00002474","idu(3);CBSS-1352.1.peg.856"]
["scaffold11|size12789","fig|6666666.156949.peg.12","peg","scaffold11|size12789_2908_2102",2908,2102,"-","Acetylxylan esterase related enzyme","FIG01376833","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.13","peg","scaffold11|size12789_3318_3193",3318,3193,"-","hypothetical protein","NA","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.14","peg","scaffold11|size12789_3367_3768",3367,3768,"+","hypothetical protein","NA","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.15","peg","scaffold11|size12789_3752_3880",3752,3880,"+","hypothetical protein","NA","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.16","peg","scaffold11|size12789_3945_4223",3945,4223,"+","DNA replication protein DnaC","FIG00763261","idu(1);DNA-replication"]
["scaffold11|size12789","fig|6666666.156949.peg.17","peg","scaffold11|size12789_4220_4363",4220,4363,"+","hypothetical protein","NA","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.18","peg","scaffold11|size12789_4639_4908",4639,4908,"+","FIG01251269: hypothetical protein","FIG01251264","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.19","peg","scaffold11|size12789_4965_5171",4965,5171,"+","FIG01237875: hypothetical protein","FIG01698394","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.20","peg","scaffold11|size12789_5427_6218",5427,6218,"+","hypothetical protein","NA","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.21","peg","scaffold11|size12789_6384_6620",6384,6620,"+","Phage terminase, large subunit [SA bacteriophages 11, Mu50B]","FIG01233775","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.22","peg","scaffold11|size12789_6581_6736",6581,6736,"+","FIG01237406: hypothetical protein","FIG01237403","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.23","peg","scaffold11|size12789_6780_7598",6780,7598,"+","N-acetylmuramoyl-L-alanine amidase( EC:3.5.1.28 )","FIG01367732","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.24","peg","scaffold11|size12789_7922_7635",7922,7635,"-","hypothetical protein","NA","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.25","peg","scaffold11|size12789_9861_7936",9861,7936,"-","Putative toxin component near putative ESAT-related proteins, repetitive / Repetitive hypothetical protein near ESAT cluster, SA0282 homolog","FIG00149320","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.26","peg","scaffold11|size12789_10389_9976",10389,9976,"-","Uncharacterized protein yqzI","FIG01381324","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.27","peg","scaffold11|size12789_10633_10499",10633,10499,"-","regulator of the activity of phosphatase RapE","NA","NA"]
["scaffold11|size12789","fig|6666666.156949.peg.28","peg","scaffold11|size12789_11750_10623",11750,10623,"-","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold122|size735","fig|6666666.156949.peg.29","peg","scaffold122|size735_221_21",221,21,"-","hypothetical protein","NA","NA"]
["scaffold123|size732","fig|6666666.156949.peg.30","peg","scaffold123|size732_27_551",27,551,"+","FIG138517: Putative lipid carrier protein","NA","NA"]
["scaffold123|size732","fig|6666666.156949.peg.31","peg","scaffold123|size732_502_732",502,732,"+","hypothetical protein","NA","NA"]
["scaffold125|size729","fig|6666666.156949.peg.32","peg","scaffold125|size729_451_275",451,275,"-","hypothetical protein","NA","NA"]
["scaffold125|size729","fig|6666666.156949.peg.33","peg","scaffold125|size729_721_575",721,575,"-","hypothetical protein","NA","NA"]
["scaffold127|size726","fig|6666666.156949.peg.34","peg","scaffold127|size726_655_314",655,314,"-","Integral membrane protein","FIG01956050","NA"]
["scaffold128|size725","fig|6666666.156949.peg.35","peg","scaffold128|size725_446_673",446,673,"+","hypothetical protein","NA","NA"]
["scaffold12|size11742","fig|6666666.156949.peg.36","peg","scaffold12|size11742_3979_4122",3979,4122,"+","hypothetical protein","NA","NA"]
["scaffold12|size11742","fig|6666666.156949.peg.37","peg","scaffold12|size11742_10742_8226",10742,8226,"-","FIG01233961: hypothetical protein","FIG01233959","NA"]
["scaffold12|size11742","fig|6666666.156949.peg.38","peg","scaffold12|size11742_11703_10699",11703,10699,"-","FIG01233961: hypothetical protein","FIG01233959","NA"]
["scaffold138|size713","fig|6666666.156949.peg.39","peg","scaffold138|size713_313_459",313,459,"+","Photosystem II 10 kDa phosphoprotein (PsbH)","FIG00113996","NA"]
["scaffold139|size712","fig|6666666.156949.peg.40","peg","scaffold139|size712_219_401",219,401,"+","hypothetical protein","NA","NA"]
["scaffold13|size9991","fig|6666666.156949.peg.41","peg","scaffold13|size9991_4_4128",4,4128,"+","FIG01233961: hypothetical protein","NA","NA"]
["scaffold13|size9991","fig|6666666.156949.peg.42","peg","scaffold13|size9991_7531_7403",7531,7403,"-","hypothetical protein","NA","NA"]
["scaffold142|size706","fig|6666666.156949.peg.43","peg","scaffold142|size706_700_83",700,83,"-","hypothetical protein","NA","NA"]
["scaffold143|size706","fig|6666666.156949.peg.44","peg","scaffold143|size706_60_392",60,392,"+","hypothetical protein","NA","NA"]
["scaffold149|size696","fig|6666666.156949.peg.45","peg","scaffold149|size696_1_228",1,228,"+","Citrate synthase (si) (EC 2.3.3.1)","FIG00130344","idu(2);TCA_Cycle idu(2);Glyoxylate_bypass idu(2);Serine-glyoxylate_cycle"]
["scaffold149|size696","fig|6666666.156949.peg.46","peg","scaffold149|size696_484_365",484,365,"-","hypothetical protein","NA","NA"]
["scaffold149|size696","fig|6666666.156949.peg.47","peg","scaffold149|size696_515_694",515,694,"+","hypothetical protein","NA","NA"]
["scaffold14|size8363","fig|6666666.156949.peg.48","peg","scaffold14|size8363_1830_1690",1830,1690,"-","hypothetical protein","NA","NA"]
["scaffold14|size8363","fig|6666666.156949.rna.4","rna","scaffold14|size8363_5617_2689",5617,2689,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold14|size8363","fig|6666666.156949.peg.49","peg","scaffold14|size8363_6492_5929",6492,5929,"-","hypothetical protein","NA","NA"]
["scaffold14|size8363","fig|6666666.156949.rna.5","rna","scaffold14|size8363_8152_6598",8152,6598,"-","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold154|size693","fig|6666666.156949.peg.50","peg","scaffold154|size693_680_504",680,504,"-","hypothetical protein","NA","NA"]
["scaffold156|size691","fig|6666666.156949.peg.51","peg","scaffold156|size691_637_329",637,329,"-","Ferredoxin","FIG00001676","idu(2);Soluble_cytochromes_and_functionally_related_electron_carriers idu(2);Inorganic_Sulfur_Assimilation"]
["scaffold15|size5289","fig|6666666.156949.peg.52","peg","scaffold15|size5289_985_2256",985,2256,"+","hypothetical protein","NA","NA"]
["scaffold164|size677","fig|6666666.156949.peg.53","peg","scaffold164|size677_13_132",13,132,"+","hypothetical protein","NA","NA"]
["scaffold164|size677","fig|6666666.156949.peg.54","peg","scaffold164|size677_629_360",629,360,"-","Fumarylacetoacetate hydrolase family protein","FIG00007658","idu(1);Gentisate_degradation idu(1);Salicylate_and_gentisate_catabolism"]
["scaffold167|size674","fig|6666666.156949.peg.55","peg","scaffold167|size674_3_485",3,485,"+","Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)","NA","isu;Polyamine_Metabolism"]
["scaffold16|size4357","fig|6666666.156949.peg.56","peg","scaffold16|size4357_2121_1996",2121,1996,"-","hypothetical protein","NA","NA"]
["scaffold16|size4357","fig|6666666.156949.peg.57","peg","scaffold16|size4357_2180_2761",2180,2761,"+","hypothetical protein","NA","NA"]
["scaffold16|size4357","fig|6666666.156949.peg.58","peg","scaffold16|size4357_3966_3847",3966,3847,"-","hypothetical protein","NA","NA"]
["scaffold173|size663","fig|6666666.156949.peg.59","peg","scaffold173|size663_499_332",499,332,"-","hypothetical protein","NA","NA"]
["scaffold175|size662","fig|6666666.156949.peg.60","peg","scaffold175|size662_174_500",174,500,"+","hypothetical protein","NA","NA"]
["scaffold177|size661","fig|6666666.156949.peg.61","peg","scaffold177|size661_171_557",171,557,"+","COGs COG3146","FIG00070318","NA"]
["scaffold17|size4344","fig|6666666.156949.rna.6","rna","scaffold17|size4344_3252_317",3252,317,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold181|size655","fig|6666666.156949.peg.62","peg","scaffold181|size655_368_499",368,499,"+","hypothetical protein","NA","NA"]
["scaffold184|size651","fig|6666666.156949.peg.63","peg","scaffold184|size651_27_635",27,635,"+","hypothetical protein","NA","NA"]
["scaffold186|size651","fig|6666666.156949.peg.64","peg","scaffold186|size651_75_281",75,281,"+","FIG005666: putative helicase","FIG00005666","isu;Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related"]
["scaffold187|size650","fig|6666666.156949.peg.65","peg","scaffold187|size650_138_443",138,443,"+","NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)","FIG00000559","NA"]
["scaffold18|size3403","fig|6666666.156949.peg.66","peg","scaffold18|size3403_1376_567",1376,567,"-","hypothetical protein","NA","NA"]
["scaffold190|size647","fig|6666666.156949.peg.67","peg","scaffold190|size647_535_14",535,14,"-","TPR domain protein in aerotolerance operon","FIG00030033","NA"]
["scaffold197|size644","fig|6666666.156949.peg.68","peg","scaffold197|size644_308_460",308,460,"+","hypothetical protein","NA","NA"]
["scaffold199|size644","fig|6666666.156949.peg.69","peg","scaffold199|size644_571_452",571,452,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.70","peg","scaffold1|size1664507_445_756",445,756,"+","Flagellar hook-length control protein FliK","NA","idu(1);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.71","peg","scaffold1|size1664507_1533_862",1533,862,"-","Streptomycin biosynthesis StrF domain protein","FIG01322565","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.72","peg","scaffold1|size1664507_2237_1530",2237,1530,"-","O-antigen biosynthesis protein RfbC","FIG01336754","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.73","peg","scaffold1|size1664507_3330_2224",3330,2224,"-","Glycosyl transferase, group 2 family protein","FIG00003788","idu(1);Exopolysaccharide_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.74","peg","scaffold1|size1664507_4703_3327",4703,3327,"-","FIG01227878: hypothetical protein","FIG01227877","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.75","peg","scaffold1|size1664507_5046_6443",5046,6443,"+","FIG01250505: hypothetical protein","FIG01250503","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.76","peg","scaffold1|size1664507_7098_6955",7098,6955,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.77","peg","scaffold1|size1664507_7071_7427",7071,7427,"+","nuclease","FIG00847408","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.78","peg","scaffold1|size1664507_8179_7460",8179,7460,"-","Uncharacterized protein yqeB","FIG01230315","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.79","peg","scaffold1|size1664507_8434_9327",8434,9327,"+","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","FIG00000405","idu(2);Pentose_phosphate_pathway idu(2);D-gluconate_and_ketogluconates_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.80","peg","scaffold1|size1664507_9973_9347",9973,9347,"-","YqeD","FIG01247787","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.81","peg","scaffold1|size1664507_10160_10912",10160,10912,"+","N-acetylmuramoyl-L-alanine amidase CwlH implicated in mother cell lysis (EC 3.5.1.28)","FIG01246904","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.82","peg","scaffold1|size1664507_11164_11895",11164,11895,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.83","peg","scaffold1|size1664507_12340_12200",12340,12200,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.84","peg","scaffold1|size1664507_12702_13220",12702,13220,"+","FIG001553: Hydrolase, HAD subfamily IIIA","FIG00001553","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.85","peg","scaffold1|size1664507_13224_14324",13224,14324,"+","GTP-binding protein YqeH, required for biogenesis of 30S ribosome subunit","FIG00001499","isu;Universal_GTPases"]
["scaffold1|size1664507","fig|6666666.156949.peg.86","peg","scaffold1|size1664507_14342_15184",14342,15184,"+","Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)","FIG00000022","isu;Chorismate_Synthesis isu;Cluster_containing_Alanyl-tRNA_synthetase isu;Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)"]
["scaffold1|size1664507","fig|6666666.156949.peg.87","peg","scaffold1|size1664507_15178_15468",15178,15468,"+","FIG004454: RNA binding protein","FIG00001879","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.88","peg","scaffold1|size1664507_15480_16049",15480,16049,"+","Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)","FIG01279159","isu;NAD_and_NADP_cofactor_biosynthesis_global"]
["scaffold1|size1664507","fig|6666666.156949.peg.89","peg","scaffold1|size1664507_16039_16599",16039,16599,"+","Hydrolase (HAD superfamily), YqeK","FIG00014849","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.90","peg","scaffold1|size1664507_16617_16973",16617,16973,"+","Ribosomal silencing factor RsfA (former Iojap)","FIG00135315","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.91","peg","scaffold1|size1664507_16970_17713",16970,17713,"+","FIG145533: Methyltransferase (EC 2.1.1.-)","FIG00113075","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.92","peg","scaffold1|size1664507_18600_17779",18600,17779,"-","Late competence protein ComER, similarity with Pyrroline-5-carboxylate reductase","FIG00098029","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.93","peg","scaffold1|size1664507_18684_19301",18684,19301,"+","Late competence protein ComEA, DNA receptor","FIG00009544","isu;Gram_Positive_Competence"]
["scaffold1|size1664507","fig|6666666.156949.peg.94","peg","scaffold1|size1664507_19368_19937",19368,19937,"+","dCMP deaminase (EC 3.5.4.12); Late competence protein ComEB","FIG00001830","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.95","peg","scaffold1|size1664507_19941_22268,scaffold1|size1664507_22272_22334",19941,22334,"+","Late competence protein ComEC, DNA transport","FIG00009564","isu;Gram_Positive_Competence"]
["scaffold1|size1664507","fig|6666666.156949.peg.96","peg","scaffold1|size1664507_22446_22312",22446,22312,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.97","peg","scaffold1|size1664507_22584_22703",22584,22703,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.98","peg","scaffold1|size1664507_22676_23719",22676,23719,"+","DNA polymerase III delta subunit (EC 2.7.7.7)","FIG00106663","isu;DNA-replication"]
["scaffold1|size1664507","fig|6666666.156949.peg.99","peg","scaffold1|size1664507_24000_23734",24000,23734,"-","SSU ribosomal protein S20p","FIG00000213","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.100","peg","scaffold1|size1664507_24204_25310",24204,25310,"+","Endopeptidase spore protease Gpr (EC 3.4.24.78)","FIG00008507","isu;Small_acid-soluble_spore_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.101","peg","scaffold1|size1664507_25373_26578",25373,26578,"+","Stage II sporulation protein P","FIG00013871","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.102","peg","scaffold1|size1664507_26595_26933",26595,26933,"+","FIG01227686: hypothetical protein","FIG01227685","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.103","peg","scaffold1|size1664507_27067_28905",27067,28905,"+","Translation elongation factor LepA","FIG00000165","icw(4);Heat_shock_dnaK_gene_cluster_extended isu;Universal_GTPases isu;Translation_elongation_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.104","peg","scaffold1|size1664507_28958_30097",28958,30097,"+","Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type","FIG00437313","isu;Heat_shock_dnaK_gene_cluster_extended isu;Heme_and_Siroheme_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.105","peg","scaffold1|size1664507_30178_31209",30178,31209,"+","Heat-inducible transcription repressor HrcA","FIG00000544","icw(1);Heat_shock_dnaK_gene_cluster_extended icw(1);GroEL_GroES"]
["scaffold1|size1664507","fig|6666666.156949.peg.106","peg","scaffold1|size1664507_31281_31844",31281,31844,"+","Heat shock protein GrpE","FIG00000103","icw(5);Heat_shock_dnaK_gene_cluster_extended isu;GroEL_GroES isu;Protein_chaperones"]
["scaffold1|size1664507","fig|6666666.156949.peg.107","peg","scaffold1|size1664507_31868_33703",31868,33703,"+","Chaperone protein DnaK","FIG00023369","icw(2);Heat_shock_dnaK_gene_cluster_extended icw(2);GroEL_GroES icw(1);Protein_chaperones"]
["scaffold1|size1664507","fig|6666666.156949.peg.108","peg","scaffold1|size1664507_33903_35030",33903,35030,"+","Chaperone protein DnaJ","FIG00000070","icw(4);Heat_shock_dnaK_gene_cluster_extended icw(3);GroEL_GroES icw(2);Protein_chaperones"]
["scaffold1|size1664507","fig|6666666.156949.peg.109","peg","scaffold1|size1664507_35055_35990",35055,35990,"+","Ribosomal protein L11 methyltransferase (EC 2.1.1.-)","FIG00000346","icw(6);Heat_shock_dnaK_gene_cluster_extended isu;Ribosome_biogenesis_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.110","peg","scaffold1|size1664507_36013_36783",36013,36783,"+","Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)","FIG00000248","icw(3);Heat_shock_dnaK_gene_cluster_extended isu;Cluster_containing_Glutathione_synthetase isu;RNA_methylation"]
["scaffold1|size1664507","fig|6666666.156949.peg.111","peg","scaffold1|size1664507_36783_38138",36783,38138,"+","tRNA-t(6)A37 methylthiotransferase","FIG00002029","icw(1);Heat_shock_dnaK_gene_cluster_extended isu;Methylthiotransferases"]
["scaffold1|size1664507","fig|6666666.156949.peg.112","peg","scaffold1|size1664507_39097_38174",39097,38174,"-","Sodium-dependent phosphate transporter","FIG00058322","isu;Phosphate_metabolism isu;NhaA,_NhaD_and_Sodium-dependent_phosphate_transporters"]
["scaffold1|size1664507","fig|6666666.156949.peg.113","peg","scaffold1|size1664507_39270_39443",39270,39443,"+","SSU ribosomal protein S21p","FIG00000178","icw(1);Macromolecular_synthesis_operon"]
["scaffold1|size1664507","fig|6666666.156949.peg.114","peg","scaffold1|size1664507_39458_39904",39458,39904,"+","Transamidase GatB domain protein","FIG00012764","isu;Macromolecular_synthesis_operon"]
["scaffold1|size1664507","fig|6666666.156949.peg.115","peg","scaffold1|size1664507_40035_41348",40035,41348,"+","FIG01226563: hypothetical protein","FIG01226562","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.116","peg","scaffold1|size1664507_41370_42365",41370,42365,"+","hypothetical protein","FIG01963437","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.117","peg","scaffold1|size1664507_42390_42809",42390,42809,"+","FIG01232279: hypothetical protein","FIG01232276","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.118","peg","scaffold1|size1664507_42866_43147",42866,43147,"+","FIG01225215: hypothetical protein","FIG01225213","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.119","peg","scaffold1|size1664507_43166_44362",43166,44362,"+","Stage IV sporulation protein","FIG00513824","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.120","peg","scaffold1|size1664507_44359_45318",44359,45318,"+","Phosphate starvation-inducible protein PhoH, predicted ATPase","FIG00045341","icw(2);Glycyl-tRNA_synthetase_containing_cluster icw(1);CBSS-56780.10.peg.1536 isu;Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.121","peg","scaffold1|size1664507_45397_47532",45397,47532,"+","Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog","FIG00002508","isu;CBSS-56780.10.peg.1536"]
["scaffold1|size1664507","fig|6666666.156949.peg.122","peg","scaffold1|size1664507_47533_48006",47533,48006,"+","Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly","NA","icw(2);Glycyl-tRNA_synthetase_containing_cluster icw(2);CBSS-56780.10.peg.1536"]
["scaffold1|size1664507","fig|6666666.156949.peg.123","peg","scaffold1|size1664507_47987_48358",47987,48358,"+","Diacylglycerol kinase (EC 2.7.1.107)","FIG00229216","isu;Riboflavin_synthesis_cluster isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.124","peg","scaffold1|size1664507_48319_48435",48319,48435,"+","Nitrogen regulatory protein P-II","FIG00005111","idu(1);Ammonia_assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.125","peg","scaffold1|size1664507_48477_48887",48477,48887,"+","Cytidine deaminase (EC 3.5.4.5)","FIG00000720","isu;Murein_hydrolase_regulation_and_cell_death isu;tRNA_modification_Bacteria isu;pyrimidine_conversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.126","peg","scaffold1|size1664507_48868_49773",48868,49773,"+","GTP-binding protein Era","FIG01304818","isu;Bacterial_Cell_Division isu;CBSS-176299.4.peg.1292 isu;Universal_GTPases icw(1);Glycyl-tRNA_synthetase_containing_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.127","peg","scaffold1|size1664507_49921_50064",49921,50064,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.128","peg","scaffold1|size1664507_50101_50868",50101,50868,"+","DNA recombination and repair protein RecO","FIG00000315","icw(1);CBSS-176299.4.peg.1292 icw(4);Glycyl-tRNA_synthetase_containing_cluster isu;DNA_repair,_bacterial_RecFOR_pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.129","peg","scaffold1|size1664507_51081_52052",51081,52052,"+","Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)","FIG00000458","isu;tRNA_aminoacylation,_Gly isu;Glycyl-tRNA_synthetase isu;Glycyl-tRNA_synthetase_containing_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.130","peg","scaffold1|size1664507_52045_54084",52045,54084,"+","Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)","FIG00000448","icw(1);tRNA_aminoacylation,_Gly icw(1);Glycyl-tRNA_synthetase icw(2);Glycyl-tRNA_synthetase_containing_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.131","peg","scaffold1|size1664507_54218_54859",54218,54859,"+","CBS domain protein, lmo1865 homolog","FIG00001987","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.132","peg","scaffold1|size1664507_54885_55697",54885,55697,"+","ATP/GTP-binding protein, SA1392 homolog","FIG00073539","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.133","peg","scaffold1|size1664507_55951_56445",55951,56445,"+","FIG01228064: hypothetical protein","FIG01228063","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.134","peg","scaffold1|size1664507_56479_58290",56479,58290,"+","DNA primase (EC 2.7.7.-)","FIG00019251","icw(1);CBSS-349161.4.peg.2417 icw(1);Macromolecular_synthesis_operon idu(1);DNA-replication"]
["scaffold1|size1664507","fig|6666666.156949.peg.135","peg","scaffold1|size1664507_58489_59604",58489,59604,"+","RNA polymerase sigma factor RpoD","FIG00038814","idu(1);CBSS-349161.4.peg.2417 idu(1);Macromolecular_synthesis_operon idu(1);Flagellum idu(1);Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.136","peg","scaffold1|size1664507_59736_59557",59736,59557,"-","FIG01232999: hypothetical protein","FIG01232998","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.137","peg","scaffold1|size1664507_59933_60295",59933,60295,"+","Membrane-attached cytochrome c550","FIG00007793","idu(1);Soluble_cytochromes_and_functionally_related_electron_carriers"]
["scaffold1|size1664507","fig|6666666.156949.peg.138","peg","scaffold1|size1664507_60552_61202",60552,61202,"+","Putative tRNA-m1A22 methylase","FIG00008776","icw(2);CBSS-349161.4.peg.2417 isu;tRNA_modification_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.139","peg","scaffold1|size1664507_61195_62316",61195,62316,"+","FIG146262: hypothetical protein","FIG00292025","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.140","peg","scaffold1|size1664507_63283_62339",63283,62339,"-","4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)","FIG00000381","isu;Isoprenoid_Biosynthesis isu;Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.141","peg","scaffold1|size1664507_64146_63406",64146,63406,"-","VrrA protein","FIG01326796","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.142","peg","scaffold1|size1664507_64288_65631",64288,65631,"+","DEAD-box ATP-dependent RNA helicase CshB (EC 3.6.4.13)","FIG00007296","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.143","peg","scaffold1|size1664507_65641_66534",65641,66534,"+","Endonuclease IV (EC 3.1.21.2)","FIG00000899","isu;DNA_repair,_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.144","peg","scaffold1|size1664507_66815_66561",66815,66561,"-","FIG01226688: hypothetical protein","FIG01226684","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.145","peg","scaffold1|size1664507_66931_67812",66931,67812,"+","Uncharacterized membrane protein Bsu2508 (YqfU)","FIG01312674","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.146","peg","scaffold1|size1664507_67950_68387",67950,68387,"+","Zinc uptake regulation protein ZUR","FIG00000479","icw(1);Oxidative_stress isu;Zinc_regulated_enzymes isu;Glycyl-tRNA_synthetase_containing_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.147","peg","scaffold1|size1664507_69011_68430",69011,68430,"-","HAD-superfamily hydrolase-like protein","FIG01354845","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.148","peg","scaffold1|size1664507_69150_69533",69150,69533,"+","FIG01226626: hypothetical protein","FIG01226625","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.149","peg","scaffold1|size1664507_70686_69559",70686,69559,"-","1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)","FIG00000449","isu;CBSS-83331.1.peg.3039 isu;Isoprenoid_Biosynthesis isu;Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.150","peg","scaffold1|size1664507_71114_70815",71114,70815,"-","FIG01226427: hypothetical protein","FIG01226426","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.151","peg","scaffold1|size1664507_71970_71209",71970,71209,"-","Arginine/ornithine antiporter ArcD","FIG00001166","idu(4);Arginine_and_Ornithine_Degradation idu(4);Arginine_Deiminase_Pathway idu(4);Polyamine_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.152","peg","scaffold1|size1664507_72080_72562",72080,72562,"+","probable membrane protein NMA1128","FIG01314885","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.153","peg","scaffold1|size1664507_72741_73349",72741,73349,"+","Manganese superoxide dismutase (EC 1.15.1.1)","FIG00000848","isu;Oxidative_stress isu;Nitric_oxide_synthase isu;Protection_from_Reactive_Oxygen_Species"]
["scaffold1|size1664507","fig|6666666.156949.peg.154","peg","scaffold1|size1664507_73456_74748",73456,74748,"+","membrane protein, putative","FIG00439698","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.155","peg","scaffold1|size1664507_74862_77012",74862,77012,"+","Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) / Transpeptidase, Penicillin binding protein transpeptidase domain","FIG00012378","idu(3);Bacterial_Cell_Division idu(3);CBSS-83331.1.peg.3039 idu(3);Flagellum_in_Campylobacter idu(3);Bacterial_Cytoskeleton idu(3);Peptidoglycan_Biosynthesis idu(3);16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold1|size1664507","fig|6666666.156949.peg.156","peg","scaffold1|size1664507_77167_78069",77167,78069,"+","Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)","FIG00010508","isu;PhoR-PhoB_two-component_regulatory_system icw(4);High_affinity_phosphate_transporter_and_control_of_PHO_regulon icw(4);Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.157","peg","scaffold1|size1664507_78138_79067",78138,79067,"+","Phosphate transport system permease protein PstC (TC 3.A.1.7.1)","FIG00018561","isu;High_affinity_phosphate_transporter_and_control_of_PHO_regulon isu;Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.158","peg","scaffold1|size1664507_79067_79951",79067,79951,"+","Phosphate transport system permease protein PstA (TC 3.A.1.7.1)","FIG00083946","icw(3);High_affinity_phosphate_transporter_and_control_of_PHO_regulon icw(1);Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.159","peg","scaffold1|size1664507_79972_80781",79972,80781,"+","Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)","FIG00011114","icw(2);High_affinity_phosphate_transporter_and_control_of_PHO_regulon icw(3);Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.160","peg","scaffold1|size1664507_80792_81574",80792,81574,"+","Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)","FIG00011114","icw(2);High_affinity_phosphate_transporter_and_control_of_PHO_regulon icw(3);Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.161","peg","scaffold1|size1664507_82066_81602",82066,81602,"-","YQZC protein","FIG01230570","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.162","peg","scaffold1|size1664507_82416_82063",82416,82063,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.163","peg","scaffold1|size1664507_82611_82477",82611,82477,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.164","peg","scaffold1|size1664507_82719_83066",82719,83066,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.165","peg","scaffold1|size1664507_83063_84142",83063,84142,"+","Uncharacterized glycosyltransferase yqgM (EC 2.-.-.-)","FIG01229485","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.166","peg","scaffold1|size1664507_84469_84350",84469,84350,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.167","peg","scaffold1|size1664507_84460_85023",84460,85023,"+","5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)","FIG00000252","isu;5-FCL-like_protein isu;One-carbon_metabolism_by_tetrahydropterines isu;Serine-glyoxylate_cycle isu;Folate_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.168","peg","scaffold1|size1664507_85090_85263",85090,85263,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.169","peg","scaffold1|size1664507_85353_86876",85353,86876,"+","FIG056164: rhomboid family serine protease","FIG00447744","isu;Peptidyl-prolyl_cis-trans_isomerase_containing_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.170","peg","scaffold1|size1664507_86974_87201",86974,87201,"+","FIG01225596: hypothetical protein","FIG01225594","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.171","peg","scaffold1|size1664507_87212_88177",87212,88177,"+","Glucokinase (EC 2.7.1.2)","FIG00001065","isu;Entner-Doudoroff_Pathway isu;Glycolysis_and_Gluconeogenesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.172","peg","scaffold1|size1664507_88293_90209",88293,90209,"+","Lipoteichoic acid synthase LtaS Type IIIa","FIG00014878","idu(1);Polyglycerolphosphate_lipoteichoic_acid_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.173","peg","scaffold1|size1664507_90295_91422",90295,91422,"+","Gamma-D-glutamyl-L-diamino acid endopeptidase I (EC 3.4.19.11)","FIG01328024","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.174","peg","scaffold1|size1664507_91484_92545",91484,92545,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.175","peg","scaffold1|size1664507_92548_92862",92548,92862,"+","ExtraCellular Mutant; Ecm15p","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.176","peg","scaffold1|size1664507_93067_92894",93067,92894,"-","YqgW","FIG01232623","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.177","peg","scaffold1|size1664507_93269_93129",93269,93129,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.178","peg","scaffold1|size1664507_93239_93859",93239,93859,"+","Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis","FIG00146516","isu;Glutathione:_Non-redox_reactions"]
["scaffold1|size1664507","fig|6666666.156949.peg.179","peg","scaffold1|size1664507_94144_93899",94144,93899,"-","FIG00673235: hypothetical protein","FIG00673233","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.180","peg","scaffold1|size1664507_94376_94756",94376,94756,"+","YqgZ","FIG01225577","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.7","rna","scaffold1|size1664507_94893_94823",94893,94823,"-","tRNA-Gln-TTG","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.181","peg","scaffold1|size1664507_94980_95816",94980,95816,"+","RsbR, positive regulator of sigma-B","FIG00001285","idu(5);SigmaB_stress_responce_regulation"]
["scaffold1|size1664507","fig|6666666.156949.peg.182","peg","scaffold1|size1664507_97197_95872,scaffold1|size1664507_95868_95797",97197,95797,"-","Magnesium and cobalt efflux protein CorC","FIG00042627","idu(4);Magnesium_transport idu(4);Glycyl-tRNA_synthetase_containing_cluster idu(4);CBSS-56780.10.peg.1536"]
["scaffold1|size1664507","fig|6666666.156949.peg.183","peg","scaffold1|size1664507_97340_98293",97340,98293,"+","Magnesium and cobalt transport protein CorA","NA","idu(1);Magnesium_transport idu(1);Campylobacter_Iron_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.184","peg","scaffold1|size1664507_98295_98492",98295,98492,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.185","peg","scaffold1|size1664507_98498_98620",98498,98620,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.186","peg","scaffold1|size1664507_98703_99773",98703,99773,"+","Late competence protein ComGA, access of DNA to ComEA","FIG00001774","isu;Gram_Positive_Competence"]
["scaffold1|size1664507","fig|6666666.156949.peg.187","peg","scaffold1|size1664507_99760_100797",99760,100797,"+","Late competence protein ComGB, access of DNA to ComEA","FIG00001758","icw(1);Gram_Positive_Competence"]
["scaffold1|size1664507","fig|6666666.156949.peg.188","peg","scaffold1|size1664507_100811_101107",100811,101107,"+","Late competence protein ComGC, access of DNA to ComEA, FIG007487","FIG00006416","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.189","peg","scaffold1|size1664507_101097_101528",101097,101528,"+","Late competence protein ComGD, access of DNA to ComEA, FIG012777","FIG00008903","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.190","peg","scaffold1|size1664507_101512_101859",101512,101859,"+","Late competence protein ComGE, FIG015513","FIG00015513","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.191","peg","scaffold1|size1664507_101972_102268",101972,102268,"+","Late competence protein ComGF, access of DNA to ComEA, FIG012620","FIG00011864","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.192","peg","scaffold1|size1664507_102269_102643",102269,102643,"+","Late competence protein ComGG, FIG028917","FIG00028917","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.193","peg","scaffold1|size1664507_102715_102894",102715,102894,"+","FIG01228056: hypothetical protein","FIG01228055","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.194","peg","scaffold1|size1664507_103262_102936",103262,102936,"-","YqzG","FIG01334370","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.195","peg","scaffold1|size1664507_103533_104294",103533,104294,"+","YqxM protein, required for localization of TasA to extracellular matrix","FIG01298677","icw(2);Bacillus_biofilm_matrix_protein_component_TasA_and_homologs"]
["scaffold1|size1664507","fig|6666666.156949.peg.196","peg","scaffold1|size1664507_104278_104850",104278,104850,"+","Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion","FIG01303740","icw(3);Bacillus_biofilm_matrix_protein_component_TasA_and_homologs isu;CBSS-176299.4.peg.1292"]
["scaffold1|size1664507","fig|6666666.156949.peg.197","peg","scaffold1|size1664507_104915_105700",104915,105700,"+","Stationary phase secreted protein TasA, major protein component of biofilm matrix","FIG00143134","isu;Bacillus_biofilm_matrix_protein_component_TasA_and_homologs"]
["scaffold1|size1664507","fig|6666666.156949.peg.198","peg","scaffold1|size1664507_106133_105792",106133,105792,"-","SinR, regulator of post-exponential-phase responses genes (competence and sporulation)","FIG00007928","icw(1);Bacillus_biofilm_matrix_protein_component_TasA_and_homologs"]
["scaffold1|size1664507","fig|6666666.156949.peg.199","peg","scaffold1|size1664507_106334_106161",106334,106161,"-","SinI protein, antagonist of SinR","FIG00027232","icw(4);Bacillus_biofilm_matrix_protein_component_TasA_and_homologs"]
["scaffold1|size1664507","fig|6666666.156949.peg.200","peg","scaffold1|size1664507_107312_106518",107312,106518,"-","Conserved protein YqhG","FIG00006702","isu;CBSS-288681.3.peg.1039"]
["scaffold1|size1664507","fig|6666666.156949.peg.201","peg","scaffold1|size1664507_109006_107333",109006,107333,"-","Superfamily II DNA/RNA helicases, SNF2 family","FIG01255181","icw(1);CBSS-288681.3.peg.1039 isu;CBSS-316273.3.peg.2709"]
["scaffold1|size1664507","fig|6666666.156949.peg.202","peg","scaffold1|size1664507_109448_110536",109448,110536,"+","Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)","FIG00138538","icw(1);Glycine_and_Serine_Utilization isu;CBSS-87626.3.peg.3639 icw(2);Glycine_cleavage_system"]
["scaffold1|size1664507","fig|6666666.156949.peg.203","peg","scaffold1|size1664507_110566_111912",110566,111912,"+","Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)","FIG00001364","isu;Glycine_and_Serine_Utilization icw(1);Glycine_cleavage_system"]
["scaffold1|size1664507","fig|6666666.156949.peg.204","peg","scaffold1|size1664507_111905_113371",111905,113371,"+","Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)","FIG00001328","icw(2);Glycine_and_Serine_Utilization isu;Glycine_cleavage_system"]
["scaffold1|size1664507","fig|6666666.156949.peg.205","peg","scaffold1|size1664507_113786_113406",113786,113406,"-","Rhodanese-like domain protein","FIG00003495","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.206","peg","scaffold1|size1664507_113977_114813",113977,114813,"+","Lipoate-protein ligase A","FIG00000465","idu(1);Lipoic_acid_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.207","peg","scaffold1|size1664507_114913_115341",114913,115341,"+","Mn-dependent transcriptional regulator MntR","FIG00634996","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.208","peg","scaffold1|size1664507_115467_116342",115467,116342,"+","lysophospholipase-like family protein","FIG01319990","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.209","peg","scaffold1|size1664507_116734_116339",116734,116339,"-","BH2804 unknown conserved protein in B. subtilis","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.210","peg","scaffold1|size1664507_117730_116774",117730,116774,"-","FIG00672904: membrane protein YqhQ","FIG00672902","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.211","peg","scaffold1|size1664507_117957_118493",117957,118493,"+","FIG01225396: hypothetical protein","FIG01225395","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.212","peg","scaffold1|size1664507_118580_119026",118580,119026,"+","3-dehydroquinate dehydratase II (EC 4.2.1.10)","FIG00000430","isu;Chorismate_Synthesis isu;Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate) isu;Quinate_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.213","peg","scaffold1|size1664507_119023_120084",119023,120084,"+","Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)","FIG00135469","isu;Protein_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.214","peg","scaffold1|size1664507_120109_120666",120109,120666,"+","Translation elongation factor P","FIG00000177","isu;Translation_elongation_factor_P_lysylation isu;Translation_elongation_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.215","peg","scaffold1|size1664507_120879_121091",120879,121091,"+","FIG01228228: hypothetical protein","FIG01228226","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.216","peg","scaffold1|size1664507_121167_122090",121167,122090,"+","Stage III sporulation protein AA","FIG00003672","icw(7);Sporulation_Cluster_III_A icw(2);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.217","peg","scaffold1|size1664507_122084_122599",122084,122599,"+","Stage III sporulation protein AB","FIG00013554","icw(4);Sporulation_Cluster_III_A icw(1);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.218","peg","scaffold1|size1664507_122622_122828",122622,122828,"+","Stage III sporulation protein AC","FIG00084255","icw(2);Sporulation_Cluster_III_A icw(4);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.219","peg","scaffold1|size1664507_122835_123236",122835,123236,"+","Stage III sporulation protein AD","FIG00011987","isu;Sporulation_Cluster_III_A icw(3);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.220","peg","scaffold1|size1664507_123255_124454",123255,124454,"+","Stage III sporulation protein AE","FIG00003769","icw(5);Sporulation_Cluster_III_A icw(6);Sporulation_gene_orphans isu;SpoVS_protein_family isu;Sporulation-associated_proteins_with_broader_functions"]
["scaffold1|size1664507","fig|6666666.156949.peg.221","peg","scaffold1|size1664507_124468_125088",124468,125088,"+","Stage III sporulation protein AF","FIG00006794","icw(1);Sporulation_Cluster_III_A isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.222","peg","scaffold1|size1664507_125081_125770",125081,125770,"+","Stage III sporulation protein AG","FIG00004841","icw(3);Sporulation_Cluster_III_A icw(5);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.223","peg","scaffold1|size1664507_125771_126427",125771,126427,"+","Stage III sporulation protein AH","FIG00013525","icw(6);Sporulation_Cluster_III_A icw(7);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.224","peg","scaffold1|size1664507_126583_127062",126583,127062,"+","Biotin carboxyl carrier protein of acetyl-CoA carboxylase","FIG00000411","isu;Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.225","peg","scaffold1|size1664507_127074_128426",127074,128426,"+","Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)","FIG00000420","icw(1);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.226","peg","scaffold1|size1664507_128447_128854",128447,128854,"+","Alkaline shock protein","FIG00668641","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.227","peg","scaffold1|size1664507_129118_129513",129118,129513,"+","Transcription termination protein NusB","FIG00016836","isu;Riboflavin_synthesis_cluster isu;Transcription_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.228","peg","scaffold1|size1664507_129525_130376",129525,130376,"+","Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)","FIG00000105","isu;5-FCL-like_protein isu;One-carbon_metabolism_by_tetrahydropterines isu;One-carbon_metabolism_by_tetrahydropterines isu;Serine-glyoxylate_cycle isu;Serine-glyoxylate_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.229","peg","scaffold1|size1664507_130478_131860",130478,131860,"+","Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)","FIG00000323","icw(1);DNA_repair,_bacterial isu;Purine_salvage_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.230","peg","scaffold1|size1664507_131857_132111",131857,132111,"+","Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)","FIG00000435","isu;DNA_repair,_bacterial icw(1);Purine_salvage_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.231","peg","scaffold1|size1664507_132101_132991",132101,132991,"+","(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)","FIG01303741","isu;Polyprenyl_Diphosphate_Biosynthesis isu;Isoprenoinds_for_Quinones icw(1);Isoprenoid_Biosynthesis isu;Isoprenoid_Biosynthesis:_Interconversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.232","peg","scaffold1|size1664507_133143_132988",133143,132988,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.233","peg","scaffold1|size1664507_133166_135067",133166,135067,"+","1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)","FIG00000343","isu;Pyridoxin_(Vitamin_B6)_Biosynthesis isu;Isoprenoid_Biosynthesis isu;Thiamin_biosynthesis isu;Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.234","peg","scaffold1|size1664507_135064_135909",135064,135909,"+","RNA binding methyltransferase FtsJ like","FIG00001125","isu;tRNA_modification_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.235","peg","scaffold1|size1664507_136007_136456",136007,136456,"+","Arginine pathway regulatory protein ArgR, repressor of arg regulon","FIG00003270","isu;Arginine_Biosynthesis_--_gjo isu;Arginine_Biosynthesis_extended isu;Arginine_and_Ornithine_Degradation isu;Arginine_Deiminase_Pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.236","peg","scaffold1|size1664507_136489_138219",136489,138219,"+","DNA repair protein RecN","FIG00000317","isu;DNA_repair,_bacterial isu;DNA-replication"]
["scaffold1|size1664507","fig|6666666.156949.peg.237","peg","scaffold1|size1664507_138394_139674",138394,139674,"+","Stage IV sporulation protein B","FIG00004463","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.238","peg","scaffold1|size1664507_139652_139825",139652,139825,"+","FIG01237270: hypothetical protein","FIG01237268","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.239","peg","scaffold1|size1664507_139950_140753",139950,140753,"+","Stage 0 sporulation two-component response regulator (Spo0A)","FIG00003682","icw(1);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.240","peg","scaffold1|size1664507_141062_141175",141062,141175,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.241","peg","scaffold1|size1664507_142366_141218",142366,141218,"-","Putative NADH-dependent flavin oxidoreductase","FIG01320969","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.242","peg","scaffold1|size1664507_142561_142409",142561,142409,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.243","peg","scaffold1|size1664507_142869_143165",142869,143165,"+","FIG01235415: hypothetical protein","FIG01235413","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.244","peg","scaffold1|size1664507_143206_143805",143206,143805,"+","N-acetylmuramoyl-L-alanine amidase AmiC precursor (EC 3.5.1.28)","FIG01232163","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.245","peg","scaffold1|size1664507_143884_144615",143884,144615,"+","Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)","FIG00002239","idu(1);Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.246","peg","scaffold1|size1664507_144742_145923",144742,145923,"+","3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)","FIG01304912","isu;Isoleucine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.247","peg","scaffold1|size1664507_145948_146811",145948,146811,"+","3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)","FIG00068115","isu;Polyhydroxybutyrate_metabolism isu;Lysine_fermentation isu;Butanol_Biosynthesis isu;Acetyl-CoA_fermentation_to_Butyrate"]
["scaffold1|size1664507","fig|6666666.156949.peg.248","peg","scaffold1|size1664507_146839_147978",146839,147978,"+","Butyryl-CoA dehydrogenase (EC 1.3.99.2)","FIG00009149","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.249","peg","scaffold1|size1664507_148012_149130",148012,149130,"+","2-methylcitrate synthase (EC 2.3.3.5)","FIG00001030","icw(1);Methylcitrate_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.250","peg","scaffold1|size1664507_149145_150563",149145,150563,"+","2-methylcitrate dehydratase (EC 4.2.1.79)","FIG00001287","isu;Methylcitrate_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.251","peg","scaffold1|size1664507_150581_151486",150581,151486,"+","Isocitrate lyase (EC 4.1.3.1)","FIG00000818","isu;Glyoxylate_bypass isu;Serine-glyoxylate_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.252","peg","scaffold1|size1664507_151764_151531",151764,151531,"-","FIG01225754: hypothetical protein","FIG01225753","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.253","peg","scaffold1|size1664507_151917_153995",151917,153995,"+","Transcriptional regulator BkdR of isoleucine and valine catabolism operon","FIG00009770","isu;Isoleucine_degradation isu;Valine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.254","peg","scaffold1|size1664507_154120_155019",154120,155019,"+","phosphotransbutyrylase (EC 2.3.1.19)","FIG00070513","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.255","peg","scaffold1|size1664507_155031_156125",155031,156125,"+","Leucine dehydrogenase (EC 1.4.1.9)","FIG00020626","isu;Branched-Chain_Amino_Acid_Biosynthesis icw(1);Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.256","peg","scaffold1|size1664507_156144_157235",156144,157235,"+","Butyrate kinase (EC 2.7.2.7)","FIG00007694","icw(1);Isoleucine_degradation isu;Acetyl-CoA_fermentation_to_Butyrate icw(1);Valine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.257","peg","scaffold1|size1664507_157256_158680",157256,158680,"+","Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)","NA","icw(4);Isoleucine_degradation icw(3);Dehydrogenase_complexes icw(4);Leucine_Degradation_and_HMG-CoA_Metabolism icw(4);Valine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.258","peg","scaffold1|size1664507_158702_159694",158702,159694,"+","Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)","FIG00000964","icw(1);Isoleucine_degradation isu;Dehydrogenase_complexes isu;Leucine_Degradation_and_HMG-CoA_Metabolism icw(1);Valine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.259","peg","scaffold1|size1664507_159708_160691",159708,160691,"+","Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)","FIG00055130","icw(3);Isoleucine_degradation icw(2);Dehydrogenase_complexes icw(3);Leucine_Degradation_and_HMG-CoA_Metabolism icw(3);Valine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.260","peg","scaffold1|size1664507_160714_161988",160714,161988,"+","Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)","FIG01304883","icw(2);Isoleucine_degradation icw(1);Dehydrogenase_complexes icw(1);Leucine_Degradation_and_HMG-CoA_Metabolism icw(2);Valine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.261","peg","scaffold1|size1664507_162879_162652,scaffold1|size1664507_162652_162521,scaffold1|size1664507_162519_162043",162879,162043,"-","transcriptional regulator, MerR family","FIG00482799","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.262","peg","scaffold1|size1664507_162992_162876",162992,162876,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.263","peg","scaffold1|size1664507_164121_162952",164121,162952,"-","Multidrug resistance protein B","FIG01356213","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.264","peg","scaffold1|size1664507_165115_164222",165115,164222,"-","Transcription regulator [contains diacylglycerol kinase catalytic domain]","FIG00001646","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.265","peg","scaffold1|size1664507_165276_165713",165276,165713,"+","FIG01226417: hypothetical protein","FIG01226416","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.266","peg","scaffold1|size1664507_165981_166748",165981,166748,"+","Amino acid ABC transporter, amino acid-binding protein","FIG00774607","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.267","peg","scaffold1|size1664507_166828_167487",166828,167487,"+","ABC transporter membrane-spanning permease - glutamine transport","FIG00774298","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.268","peg","scaffold1|size1664507_167480_168202",167480,168202,"+","Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)","FIG01226599","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.269","peg","scaffold1|size1664507_168273_169241",168273,169241,"+","Integral membrane protein","FIG01956050","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.270","peg","scaffold1|size1664507_169293_169823",169293,169823,"+","Protein erfK/srfK","FIG01226130","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.271","peg","scaffold1|size1664507_170025_170447",170025,170447,"+","Methylmalonyl-CoA epimerase (EC 5.1.99.1)","FIG00003953","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.272","peg","scaffold1|size1664507_170434_171963",170434,171963,"+","Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) / Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2); Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)","FIG00002099","isu;Serine-glyoxylate_cycle isu;CBSS-83332.1.peg.3803 idu(1);Fatty_Acid_Biosynthesis_FASII idu(1);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.273","peg","scaffold1|size1664507_171981_173096",171981,173096,"+","Peptidase T (EC 3.4.11.4)","FIG00646264","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.274","peg","scaffold1|size1664507_174033_173137",174033,173137,"-","YqjF","FIG01241132","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.275","peg","scaffold1|size1664507_174873_174046",174873,174046,"-","Inner membrane protein translocase component YidC, OxaA protein","FIG00229604","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.276","peg","scaffold1|size1664507_175185_174904",175185,174904,"-","YqzJ","FIG01383150","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.277","peg","scaffold1|size1664507_175264_176508",175264,176508,"+","DNA polymerase IV (EC 2.7.7.7)","FIG00023943","idu(1);DNA_repair,_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.278","peg","scaffold1|size1664507_176618_178027",176618,178027,"+","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","FIG00000405","icw(1);Pentose_phosphate_pathway idu(2);D-gluconate_and_ketogluconates_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.279","peg","scaffold1|size1664507_179608_178139",179608,178139,"-","Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)","FIG00000332","isu;Pentose_phosphate_pathway isu;Entner-Doudoroff_Pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.280","peg","scaffold1|size1664507_179835_180758",179835,180758,"+","Ribonuclease Z (EC 3.1.26.11)","FIG00000828","isu;tRNA_processing"]
["scaffold1|size1664507","fig|6666666.156949.peg.281","peg","scaffold1|size1664507_180840_180989",180840,180989,"+","LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent","NA","isu;Ribosome_LSU_bacterial isu;Ribosome_LSU_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.282","peg","scaffold1|size1664507_181793_181032",181793,181032,"-","abhydrolase, alpha/beta hydrolase fold","FIG01340120","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.283","peg","scaffold1|size1664507_182919_181903",182919,181903,"-","NADPH dehydrogenase (EC 1.6.99.1)","FIG01332740","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.284","peg","scaffold1|size1664507_183091_184734",183091,184734,"+","Arginine utilization protein RocB","FIG00016187","idu(1);Arginine_and_Ornithine_Degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.285","peg","scaffold1|size1664507_185611_184775",185611,184775,"-","Pyrroline-5-carboxylate reductase (EC 1.5.1.2)","FIG00133325","idu(1);Proline_Synthesis idu(1);A_Hypothetical_Protein_Related_to_Proline_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.286","peg","scaffold1|size1664507_186016_186975",186016,186975,"+","Hydroxyacylglutathione hydrolase (EC 3.1.2.6)","FIG00000013","isu;Glutathione:_Non-redox_reactions isu;Methylglyoxal_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.287","peg","scaffold1|size1664507_186981_187760",186981,187760,"+","oxidoreductase, short-chain dehydrogenase/reductase family","FIG01965431","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.288","peg","scaffold1|size1664507_187836_189182",187836,189182,"+","D-serine dehydratase (EC 4.3.1.18)","FIG00001695","isu;Glycine_and_Serine_Utilization isu;Pyruvate_Alanine_Serine_Interconversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.289","peg","scaffold1|size1664507_189254_190213",189254,190213,"+","Pantothenate kinase (EC 2.7.1.33)","FIG00000936","isu;Coenzyme_A_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.290","peg","scaffold1|size1664507_190218_190604",190218,190604,"+","Possible glyoxylase family protein (Lactoylglutathione lyase) (EC 4.4.1.5)","FIG01347028","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.291","peg","scaffold1|size1664507_190759_190601",190759,190601,"-","FIG01228864: hypothetical protein","FIG01228860","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.292","peg","scaffold1|size1664507_192042_190789",192042,190789,"-","Multidrug resistance protein B","FIG01356213","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.293","peg","scaffold1|size1664507_192338_192574",192338,192574,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.294","peg","scaffold1|size1664507_192801_192595",192801,192595,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.295","peg","scaffold1|size1664507_192970_194205",192970,194205,"+","DNA polymerase IV (EC 2.7.7.7)","FIG00023943","idu(1);DNA_repair,_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.296","peg","scaffold1|size1664507_194202_194540",194202,194540,"+","FIG01235421: hypothetical protein","FIG01235417","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.297","peg","scaffold1|size1664507_194726_195196",194726,195196,"+","YqjY","FIG01228707","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.298","peg","scaffold1|size1664507_195207_195551",195207,195551,"+","FIG01243648: hypothetical protein","FIG01243647","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.299","peg","scaffold1|size1664507_195544_196575",195544,196575,"+","N-Acyltransferase superfamily / Uncharacterised protein family UPF0157 (COG2320)","FIG01230721","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.300","peg","scaffold1|size1664507_196572_196895",196572,196895,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.301","peg","scaffold1|size1664507_196908_197147",196908,197147,"+","FIG01226063: hypothetical protein","FIG00672983","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.302","peg","scaffold1|size1664507_198107_197187",198107,197187,"-","YqkD","FIG01310534","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.303","peg","scaffold1|size1664507_198265_198489",198265,198489,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.304","peg","scaffold1|size1664507_199441_198521",199441,198521,"-","Oxidoreductase, aldo/keto reductase family protein","FIG01240797","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.305","peg","scaffold1|size1664507_199626_199504",199626,199504,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.306","peg","scaffold1|size1664507_199701_200258",199701,200258,"+","ADP-ribose pyrophosphatase (EC 3.6.1.13)","FIG00000367","isu;NAD_and_NADP_cofactor_biosynthesis_global isu;Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster isu;CBSS-342610.3.peg.1794 isu;Nudix_proteins_(nucleoside_triphosphate_hydrolases)"]
["scaffold1|size1664507","fig|6666666.156949.peg.307","peg","scaffold1|size1664507_200255_201418",200255,201418,"+","DNA helicase II (EC 3.6.1.-)","FIG01313429","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.308","peg","scaffold1|size1664507_201777_201427",201777,201427,"-","transcriptional regulator AnsR","FIG01326868","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.309","peg","scaffold1|size1664507_201959_202948",201959,202948,"+","L-asparaginase I, cytoplasmic (EC 3.5.1.1)","NA","isu;Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.310","peg","scaffold1|size1664507_202993_204420",202993,204420,"+","Aspartate ammonia-lyase (EC 4.3.1.1)","FIG00079822","icw(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.311","peg","scaffold1|size1664507_204561_205967",204561,205967,"+","Malate Na(+) symporter","FIG01304383","idu(2);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold1|size1664507","fig|6666666.156949.peg.312","peg","scaffold1|size1664507_205985_207304",205985,207304,"+","NAD-dependent malic enzyme (EC 1.1.1.38)","NA","icw(1);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold1|size1664507","fig|6666666.156949.peg.313","peg","scaffold1|size1664507_207334_207618",207334,207618,"+","FIG01232010: hypothetical protein","FIG01232009","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.314","peg","scaffold1|size1664507_207719_208363",207719,208363,"+","Stage II sporulation protein M (SpoIIM)","FIG00004545","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.315","peg","scaffold1|size1664507_208476_208925",208476,208925,"+","Ferric uptake regulation protein FUR","FIG00132630","isu;Oxidative_stress isu;Bacterial_RNA-metabolizing_Zn-dependent_hydrolases"]
["scaffold1|size1664507","fig|6666666.156949.peg.316","peg","scaffold1|size1664507_208952_209065",208952,209065,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.317","peg","scaffold1|size1664507_209050_209277",209050,209277,"+","FIG01226426: hypothetical protein","FIG01226425","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.318","peg","scaffold1|size1664507_209285_210175",209285,210175,"+","Tyrosine recombinase XerD","FIG01970495","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.319","peg","scaffold1|size1664507_210336_211520",210336,211520,"+","Phosphopentomutase (EC 5.4.2.7)","FIG00000738","icw(1);Deoxyribose_and_Deoxynucleoside_Catabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.320","peg","scaffold1|size1664507_211533_212348",211533,212348,"+","Purine nucleoside phosphorylase (EC 2.4.2.1); N-Ribosylnicotinamide phosphorylase (EC 2.4.2.1)","FIG01955800","idu(2);Purine_conversions isu;NAD_and_NADP_cofactor_biosynthesis_global idu(2);Adenosyl_nucleosidases idu(2);Deoxyribose_and_Deoxynucleoside_Catabolism idu(2);pyrimidine_conversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.321","peg","scaffold1|size1664507_212359_213672",212359,213672,"+","D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","FIG00561498","idu(5);Murein_Hydrolases idu(5);Peptidoglycan_Biosynthesis idu(5);CBSS-84588.1.peg.1247 idu(5);Metallocarboxypeptidases_(EC_3.4.17.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.322","peg","scaffold1|size1664507_213768_214121",213768,214121,"+","Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV","FIG00103613","idu(1);SigmaB_stress_responce_regulation"]
["scaffold1|size1664507","fig|6666666.156949.peg.323","peg","scaffold1|size1664507_214118_214558",214118,214558,"+","Anti-sigma F factor (EC 2.7.11.1)","FIG01031896","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.324","peg","scaffold1|size1664507_214570_215337",214570,215337,"+","RNA polymerase sporulation specific sigma factor SigF","FIG00003596","icw(4);Sporulation_gene_orphans isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.325","peg","scaffold1|size1664507_215461_215985,scaffold1|size1664507_215987_216064",215461,216064,"+","Stage V sporulation protein AA (SpoVAA)","FIG00013178","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.326","peg","scaffold1|size1664507_216074_216499",216074,216499,"+","Stage V sporulation protein AB (SpoVAB)","FIG00011842","icw(2);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.327","peg","scaffold1|size1664507_216512_216964",216512,216964,"+","Stage V sporulation protein AC (SpoVAC)","FIG00002563","icw(3);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.328","peg","scaffold1|size1664507_216977_217993",216977,217993,"+","Stage V sporulation protein AD (SpoVAD)","FIG00002500","icw(1);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.329","peg","scaffold1|size1664507_217995_218333,scaffold1|size1664507_218335_218964",217995,218964,"+","Stage V sporulation protein AE (SpoVAE)","FIG00007180","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.330","peg","scaffold1|size1664507_218915_220396",218915,220396,"+","Stage V sporulation protein AF (SpoVAF)","FIG00013491","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.331","peg","scaffold1|size1664507_220496_221821",220496,221821,"+","Diaminopimelate decarboxylase (EC 4.1.1.20)","FIG00138250","isu;CBSS-323850.3.peg.3269 isu;Lysine_Biosynthesis_DAP_Pathway isu;Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch"]
["scaffold1|size1664507","fig|6666666.156949.peg.332","peg","scaffold1|size1664507_222723_221851",222723,221851,"-","Extracellular protein","FIG01310300","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.333","peg","scaffold1|size1664507_222763_222897",222763,222897,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.334","peg","scaffold1|size1664507_222947_223411",222947,223411,"+","Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)","FIG01955868","isu;Peptidyl-prolyl_cis-trans_isomerase_containing_cluster isu;Queuosine-Archaeosine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.335","peg","scaffold1|size1664507_223759_223547",223759,223547,"-","YpzD","FIG01679073","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.336","peg","scaffold1|size1664507_223923_224129",223923,224129,"+","FIG01251890: hypothetical protein","FIG01314778","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.337","peg","scaffold1|size1664507_224577_225131",224577,225131,"+","Signal peptidase I (EC 3.4.21.89)","FIG00000015","idu(3);Signal_peptidase idu(3);CBSS-176299.4.peg.1292"]
["scaffold1|size1664507","fig|6666666.156949.peg.338","peg","scaffold1|size1664507_225366_225710",225366,225710,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.339","peg","scaffold1|size1664507_226105_227190",226105,227190,"+","Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)","FIG00000384","icw(1);Riboflavin,_FMN_and_FAD_metabolism icw(3);Riboflavin,_FMN_and_FAD_metabolism icw(1);Riboflavin_synthesis_cluster icw(3);Riboflavin_synthesis_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.340","peg","scaffold1|size1664507_227201_227848",227201,227848,"+","Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)","FIG00000273","icw(3);Riboflavin,_FMN_and_FAD_metabolism isu;riboflavin_to_FAD icw(3);Riboflavin_synthesis_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.341","peg","scaffold1|size1664507_227863_229059",227863,229059,"+","3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)","FIG00036306","icw(2);Riboflavin,_FMN_and_FAD_metabolism icw(3);Riboflavin,_FMN_and_FAD_metabolism icw(1);riboflavin_to_FAD icw(2);Riboflavin_synthesis_cluster icw(3);Riboflavin_synthesis_cluster isu;Molybdenum_cofactor_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.342","peg","scaffold1|size1664507_229092_229556",229092,229556,"+","6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)","FIG00000231","isu;Riboflavin,_FMN_and_FAD_metabolism isu;Riboflavin_synthesis_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.343","peg","scaffold1|size1664507_229669_230043",229669,230043,"+","RibT protein","FIG01226832","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.344","peg","scaffold1|size1664507_230581_230057",230581,230057,"-","DUF309 domain-containing protein","FIG01330986","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.345","peg","scaffold1|size1664507_230863_231618",230863,231618,"+","Segregation and condensation protein A","FIG00019652","icw(1);CBSS-314276.3.peg.1499 icw(2);Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.346","peg","scaffold1|size1664507_231608_232201",231608,232201,"+","Segregation and condensation protein B","FIG00133569","isu;CBSS-314276.3.peg.1499 icw(1);Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster isu;CBSS-203122.12.peg.188"]
["scaffold1|size1664507","fig|6666666.156949.peg.347","peg","scaffold1|size1664507_232256_232795",232256,232795,"+","FIG01226807: hypothetical protein","FIG01226803","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.348","peg","scaffold1|size1664507_232918_234066",232918,234066,"+","D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","FIG00561498","idu(5);Murein_Hydrolases idu(5);Peptidoglycan_Biosynthesis idu(5);CBSS-84588.1.peg.1247 idu(5);Metallocarboxypeptidases_(EC_3.4.17.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.349","peg","scaffold1|size1664507_234054_234644",234054,234644,"+","Spore maturation protein A","FIG00003439","icw(1);Spore_Core_Dehydration"]
["scaffold1|size1664507","fig|6666666.156949.peg.350","peg","scaffold1|size1664507_234649_235185",234649,235185,"+","Spore maturation protein B","FIG00007495","isu;Spore_Core_Dehydration"]
["scaffold1|size1664507","fig|6666666.156949.peg.351","peg","scaffold1|size1664507_235277_236011",235277,236011,"+","Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)","FIG00869624","icw(2);CBSS-314276.3.peg.1499 isu;Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster isu;RNA_pseudouridine_syntheses"]
["scaffold1|size1664507","fig|6666666.156949.peg.352","peg","scaffold1|size1664507_236099_236221,scaffold1|size1664507_236223_236645",236099,236645,"+","Cytochrome c-type biogenesis protein ResA","FIG00033907","isu;Biogenesis_of_c-type_cytochromes"]
["scaffold1|size1664507","fig|6666666.156949.peg.353","peg","scaffold1|size1664507_236642_238270",236642,238270,"+","Cytochrome c-type biogenesis protein Ccs1/ResB","FIG00005336","isu;Biogenesis_of_c-type_cytochromes"]
["scaffold1|size1664507","fig|6666666.156949.peg.354","peg","scaffold1|size1664507_238290_239465",238290,239465,"+","Cytochrome c-type biogenesis protein CcsA/ResC","FIG00001246","icw(1);Biogenesis_of_c-type_cytochromes isu;CBSS-196164.1.peg.461"]
["scaffold1|size1664507","fig|6666666.156949.peg.355","peg","scaffold1|size1664507_239546_240268",239546,240268,"+","DNA-binding response regulator ResD","FIG00011465","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.356","peg","scaffold1|size1664507_240265_242034",240265,242034,"+","Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)","FIG00000846","isu;Potassium_homeostasis"]
["scaffold1|size1664507","fig|6666666.156949.peg.357","peg","scaffold1|size1664507_242238_242822",242238,242822,"+","RNA polymerase sigma factor SigX","FIG01643040","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.358","peg","scaffold1|size1664507_242797_243861",242797,243861,"+","Sigma-X negative effector","FIG01233692","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.359","peg","scaffold1|size1664507_243971_244738",243971,244738,"+","3-dehydroquinate dehydratase I (EC 4.2.1.10)","FIG00001170","isu;Chorismate_Synthesis isu;Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate) isu;Quinate_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.360","peg","scaffold1|size1664507_246358_244781",246358,244781,"-","D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)","FIG00031250","isu;Pyridoxin_(Vitamin_B6)_Biosynthesis isu;Glycine_and_Serine_Utilization isu;Serine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.361","peg","scaffold1|size1664507_246615_246749",246615,246749,"+","Uncharacterized protein ypzE","FIG01239506","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.362","peg","scaffold1|size1664507_246855_247427",246855,247427,"+","Substrate-specific component RibU of riboflavin ECF transporter","FIG00009156","isu;ECF_class_transporters isu;Riboflavin,_FMN_and_FAD_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.363","peg","scaffold1|size1664507_247715_247467",247715,247467,"-","Ferredoxin","FIG00001676","idu(2);Soluble_cytochromes_and_functionally_related_electron_carriers idu(2);Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.364","peg","scaffold1|size1664507_247981_249039",247981,249039,"+","FIG00743178: hypothetical protein","FIG00743177","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.365","peg","scaffold1|size1664507_249032_250522",249032,250522,"+","ATP-dependent DNA helicase RecS (RecQ family)","NA","isu;DNA_repair,_bacterial_RecFOR_pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.366","peg","scaffold1|size1664507_250549_251151",250549,251151,"+","CAAX amino terminal protease family protein","FIG00745068","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.367","peg","scaffold1|size1664507_251102_251833",251102,251833,"+","FIG01227733: hypothetical protein","FIG01227732","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.368","peg","scaffold1|size1664507_251896_252339",251896,252339,"+","FIG01232489: hypothetical protein","FIG01232487","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.369","peg","scaffold1|size1664507_252426_253205",252426,253205,"+","Phosphoesterase","FIG01238380","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.370","peg","scaffold1|size1664507_253364_253948",253364,253948,"+","Negative regulator of genetic competence MecA","FIG00005813","idu(1);Gram_Positive_Competence"]
["scaffold1|size1664507","fig|6666666.156949.peg.371","peg","scaffold1|size1664507_254104_255378",254104,255378,"+","NAD-specific glutamate dehydrogenase (EC 1.4.1.2)","FIG00011402","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(1);Glutamate_dehydrogenases"]
["scaffold1|size1664507","fig|6666666.156949.peg.372","peg","scaffold1|size1664507_255487_256461",255487,256461,"+","Thioredoxin reductase (EC 1.8.1.9)","FIG01955919","idu(3);pyrimidine_conversions idu(3);Glycine_reductase,_sarcosine_reductase_and_betaine_reductase idu(3);Thioredoxin-disulfide_reductase"]
["scaffold1|size1664507","fig|6666666.156949.peg.373","peg","scaffold1|size1664507_256581_257237",256581,257237,"+","FIG00895122: hypothetical protein","FIG01226482","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.374","peg","scaffold1|size1664507_257376_258293",257376,258293,"+","Spore cortex-lytic enzyme, lytic transglycosylase SleB","FIG00005089","icw(1);Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.375","peg","scaffold1|size1664507_258328_259680",258328,259680,"+","Spore germination protein YpeB","FIG00012446","isu;Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.376","peg","scaffold1|size1664507_259774_260427",259774,260427,"+","FIG01234995: hypothetical protein","FIG01226458","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.377","peg","scaffold1|size1664507_260472_260648",260472,260648,"+","alternate gene name: jofB","FIG01228726","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.378","peg","scaffold1|size1664507_260727_261401",260727,261401,"+","Cytidylate kinase (EC 2.7.4.25)","FIG00041008","isu;Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster isu;pyrimidine_conversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.379","peg","scaffold1|size1664507_261634_262782",261634,262782,"+","SSU ribosomal protein S1p","FIG00000210","idu(1);Cell_division-ribosomal_stress_proteins_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.380","peg","scaffold1|size1664507_262795_263844",262795,263844,"+","Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)","FIG00001120","isu;Isoprenoid_Biosynthesis isu;Isoprenoid_Biosynthesis:_Interconversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.381","peg","scaffold1|size1664507_264018_263887",264018,263887,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.382","peg","scaffold1|size1664507_264096_264695",264096,264695,"+","membrane protein, putative","FIG00439698","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.383","peg","scaffold1|size1664507_264692_265585",264692,265585,"+","putative membrane protein","FIG00092051","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.384","peg","scaffold1|size1664507_265582_265776",265582,265776,"+","FIG01227225: hypothetical protein","FIG01227224","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.385","peg","scaffold1|size1664507_265930_267240",265930,267240,"+","GTP-binding protein EngA","FIG00129616","isu;Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster isu;CBSS-290633.1.peg.1906 isu;Universal_GTPases"]
["scaffold1|size1664507","fig|6666666.156949.peg.386","peg","scaffold1|size1664507_267258_268295",267258,268295,"+","Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)","FIG00000309","isu;Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.387","peg","scaffold1|size1664507_268633_268836",268633,268836,"+","FIG01226975: hypothetical protein","FIG01226974","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.388","peg","scaffold1|size1664507_268858_269592",268858,269592,"+","ABC transporter periplasmic binding protein yphF","FIG00674280","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.389","peg","scaffold1|size1664507_269773_271251",269773,271251,"+","Stage IV sporulation protein A","FIG00003654","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.390","peg","scaffold1|size1664507_271625_271476",271625,271476,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.391","peg","scaffold1|size1664507_271624_271902",271624,271902,"+","DNA-binding protein HBsu","FIG00002412","isu;DNA_structural_proteins,_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.392","peg","scaffold1|size1664507_272090_272662",272090,272662,"+","GTP cyclohydrolase I (EC 3.5.4.16) type 1","FIG00000226","isu;tRNA_modification_Bacteria isu;Folate_biosynthesis_cluster isu;Zinc_regulated_enzymes isu;Folate_Biosynthesis isu;Queuosine-Archaeosine_Biosynthesis isu;Molybdenum_cofactor_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.393","peg","scaffold1|size1664507_272684_272911",272684,272911,"+","transcription attenuation protein MtrB","FIG00895269","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.394","peg","scaffold1|size1664507_273075_273830",273075,273830,"+","Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)","FIG00004229","icw(1);Polyprenyl_Diphosphate_Biosynthesis icw(1);Isoprenoinds_for_Quinones icw(1);Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes"]
["scaffold1|size1664507","fig|6666666.156949.peg.395","peg","scaffold1|size1664507_273837_274538",273837,274538,"+","2-heptaprenyl-1,4-naphthoquinone methyltransferase MenG (EC 2.1.1.163)","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.396","peg","scaffold1|size1664507_274564_275526",274564,275526,"+","Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)","FIG00002487","isu;Polyprenyl_Diphosphate_Biosynthesis isu;Isoprenoinds_for_Quinones isu;Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes"]
["scaffold1|size1664507","fig|6666666.156949.peg.397","peg","scaffold1|size1664507_275756_276091",275756,276091,"+","Nucleoside diphosphate kinase (EC 2.7.4.6)","FIG00000251","isu;Purine_conversions isu;pyrimidine_conversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.398","peg","scaffold1|size1664507_276201_276088",276201,276088,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.399","peg","scaffold1|size1664507_276328_277098",276328,277098,"+","Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)","FIG00000452","isu;Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.400","peg","scaffold1|size1664507_277173_278345",277173,278345,"+","Chorismate synthase (EC 4.2.3.5)","FIG00000212","icw(2);Chorismate_Synthesis icw(1);Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)"]
["scaffold1|size1664507","fig|6666666.156949.peg.401","peg","scaffold1|size1664507_278345_279433",278345,279433,"+","3-dehydroquinate synthase (EC 4.2.3.4)","FIG00000224","icw(1);Chorismate_Synthesis isu;Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)"]
["scaffold1|size1664507","fig|6666666.156949.peg.402","peg","scaffold1|size1664507_279430_279813",279430,279813,"+","Chorismate mutase II (EC 5.4.99.5)","FIG00002036","isu;Chorismate_Synthesis isu;Phenylalanine_and_Tyrosine_Branches_from_Chorismate"]
["scaffold1|size1664507","fig|6666666.156949.peg.403","peg","scaffold1|size1664507_280030_281577",280030,281577,"+","Anthranilate synthase, aminase component (EC 4.1.3.27)","FIG01960111","icw(4);Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. icw(4);Tryptophan_synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.404","peg","scaffold1|size1664507_281549_282565",281549,282565,"+","Anthranilate phosphoribosyltransferase (EC 2.4.2.18)","FIG00062957","icw(1);Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. icw(1);Tryptophan_synthesis icw(1);Auxin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.405","peg","scaffold1|size1664507_282558_283310",282558,283310,"+","Indole-3-glycerol phosphate synthase (EC 4.1.1.48)","FIG00135159","icw(3);Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. icw(3);Tryptophan_synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.406","peg","scaffold1|size1664507_283315_283962",283315,283962,"+","Phosphoribosylanthranilate isomerase (EC 5.3.1.24)","FIG00069722","icw(5);Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. icw(5);Tryptophan_synthesis icw(3);Auxin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.407","peg","scaffold1|size1664507_283943_285145",283943,285145,"+","Tryptophan synthase beta chain (EC 4.2.1.20)","FIG00116323","icw(2);Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. icw(2);Tryptophan_synthesis icw(2);Auxin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.408","peg","scaffold1|size1664507_285138_285941",285138,285941,"+","Tryptophan synthase alpha chain (EC 4.2.1.20)","FIG00105533","isu;Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. isu;Tryptophan_synthesis isu;Auxin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.409","peg","scaffold1|size1664507_285952_287034",285952,287034,"+","Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)","NA","isu;Phenylalanine_and_Tyrosine_Branches_from_Chorismate isu;Histidine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.410","peg","scaffold1|size1664507_287083_288198",287083,288198,"+","Prephenate dehydrogenase (EC 1.3.1.12)","FIG00132787","icw(1);Chorismate_Synthesis icw(1);Phenylalanine_and_Tyrosine_Branches_from_Chorismate"]
["scaffold1|size1664507","fig|6666666.156949.peg.411","peg","scaffold1|size1664507_288209_289495",288209,289495,"+","5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)","FIG00075970","isu;Chorismate_Synthesis isu;Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)"]
["scaffold1|size1664507","fig|6666666.156949.peg.412","peg","scaffold1|size1664507_289830_291101",289830,291101,"+","FIG009300: TPR-repeat-containing protein","NA","icw(2);TPR-repeat-containing_protein_cluster_1"]
["scaffold1|size1664507","fig|6666666.156949.peg.413","peg","scaffold1|size1664507_291173_291712",291173,291712,"+","FIG003190: hypothetical protein co-occurring with TPR domain protein","FIG01307049","isu;TPR-repeat-containing_protein_cluster_1"]
["scaffold1|size1664507","fig|6666666.156949.peg.414","peg","scaffold1|size1664507_291767_292213",291767,292213,"+","FIG013069: hypothetical protein co-occurring with TPR domain protein","FIG01226673","icw(1);TPR-repeat-containing_protein_cluster_1"]
["scaffold1|size1664507","fig|6666666.156949.peg.415","peg","scaffold1|size1664507_292355_292858",292355,292858,"+","Menaquinone-cytochrome C reductase iron-sulfur subunit","FIG00099294","icw(2);Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes"]
["scaffold1|size1664507","fig|6666666.156949.peg.416","peg","scaffold1|size1664507_292860_293534",292860,293534,"+","Menaquinone-cytochrome c reductase, cytochrome B subunit","FIG00004998","isu;Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes"]
["scaffold1|size1664507","fig|6666666.156949.peg.417","peg","scaffold1|size1664507_293569_294336",293569,294336,"+","Menaquinone-cytochrome C oxidoreductase, cytochrome C subunit","FIG00006680","icw(1);Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes"]
["scaffold1|size1664507","fig|6666666.156949.peg.418","peg","scaffold1|size1664507_294447_295040",294447,295040,"+","Hypothetical transmembrane protein CDS_ID OB1773","FIG00009026","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.419","peg","scaffold1|size1664507_295109_295903",295109,295903,"+","FIG01227150: hypothetical protein","FIG01227149","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.420","peg","scaffold1|size1664507_296817_295945",296817,295945,"-","hypothetical protein BH3604","FIG00006868","idu(1);CBSS-393121.3.peg.2760"]
["scaffold1|size1664507","fig|6666666.156949.peg.421","peg","scaffold1|size1664507_296957_297292",296957,297292,"+","MazG nucleotide pyrophosphohydrolase","FIG00790235","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.422","peg","scaffold1|size1664507_297304_298107",297304,298107,"+","4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)","FIG00000347","isu;Lysine_Biosynthesis_DAP_Pathway isu;Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch"]
["scaffold1|size1664507","fig|6666666.156949.peg.423","peg","scaffold1|size1664507_298123_298536",298123,298536,"+","Methylglyoxal synthase (EC 4.2.3.3)","FIG00000967","isu;CBSS-83333.1.peg.946 isu;Methylglyoxal_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.424","peg","scaffold1|size1664507_298529_299239",298529,299239,"+","Lmbe-related protein","FIG00895127","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.425","peg","scaffold1|size1664507_299236_300369",299236,300369,"+","Glycosyl transferase, group 1 family protein","FIG00009775","isu;Exopolysaccharide_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.426","peg","scaffold1|size1664507_300374_301567",300374,301567,"+","tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)","FIG00000289","isu;A_cluster_relating_to_Tryptophanyl-tRNA_synthetase isu;tRNA_nucleotidyltransferase isu;Polyadenylation_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.427","peg","scaffold1|size1664507_301552_302529",301552,302529,"+","Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15) / Biotin operon repressor","FIG00000692","isu;Biotin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.428","peg","scaffold1|size1664507_302747_302601",302747,302601,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.429","peg","scaffold1|size1664507_302775_303608",302775,303608,"+","3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)","FIG00000364","isu;Coenzyme_A_Biosynthesis_cluster isu;Coenzyme_A_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.430","peg","scaffold1|size1664507_303610_304470",303610,304470,"+","Pantoate--beta-alanine ligase (EC 6.3.2.1)","FIG00000440","icw(1);Folate_biosynthesis_cluster icw(1);Coenzyme_A_Biosynthesis_cluster icw(2);Coenzyme_A_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.431","peg","scaffold1|size1664507_304472_304855",304472,304855,"+","Aspartate 1-decarboxylase (EC 4.1.1.11)","FIG00008304","isu;Folate_biosynthesis_cluster icw(2);Coenzyme_A_Biosynthesis_cluster icw(1);Coenzyme_A_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.432","peg","scaffold1|size1664507_304981_307776",304981,307776,"+","DinG family ATP-dependent helicase YoaA","FIG00000680","isu;DNA_repair,_bacterial_DinG_and_relatives"]
["scaffold1|size1664507","fig|6666666.156949.peg.433","peg","scaffold1|size1664507_307919_308089",307919,308089,"+","FIG01226635: hypothetical protein","FIG01226634","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.434","peg","scaffold1|size1664507_308098_308583",308098,308583,"+","FIG01226722: hypothetical protein","FIG01226721","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.435","peg","scaffold1|size1664507_308606_309787",308606,309787,"+","Aspartate aminotransferase (EC 2.6.1.1)","FIG00719736","idu(7);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(7);Threonine_and_Homoserine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.436","peg","scaffold1|size1664507_309928_311223",309928,311223,"+","Asparaginyl-tRNA synthetase (EC 6.1.1.22)","FIG00000636","isu;tRNA_aminoacylation,_Asp_and_Asn"]
["scaffold1|size1664507","fig|6666666.156949.peg.437","peg","scaffold1|size1664507_311316_312014",311316,312014,"+","Chromosome replication initiation protein DnaD","FIG00001781","isu;Control_of_cell_elongation_-_division_cycle_in_Bacilli"]
["scaffold1|size1664507","fig|6666666.156949.peg.438","peg","scaffold1|size1664507_312033_312692",312033,312692,"+","Endonuclease III (EC 4.2.99.18)","FIG00000290","isu;DNA_Repair_Base_Excision icw(2);Control_of_cell_elongation_-_division_cycle_in_Bacilli"]
["scaffold1|size1664507","fig|6666666.156949.peg.439","peg","scaffold1|size1664507_312689_313183",312689,313183,"+","Hypothetical protein in cluster with penicillin-binding protein PBP1, Bacillus type","FIG00013168","icw(5);Control_of_cell_elongation_-_division_cycle_in_Bacilli"]
["scaffold1|size1664507","fig|6666666.156949.peg.440","peg","scaffold1|size1664507_316008_313258",316008,313258,"-","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) / Penicillin-binding protein 1A/1B (PBP1)","FIG00007126","idu(2);Peptidoglycan_Biosynthesis icw(4);Control_of_cell_elongation_-_division_cycle_in_Bacilli isu;Methicillin_resistance_in_Staphylococci"]
["scaffold1|size1664507","fig|6666666.156949.peg.441","peg","scaffold1|size1664507_316650_316030",316650,316030,"-","RecU Holliday junction resolvase","FIG00001605","icw(3);Control_of_cell_elongation_-_division_cycle_in_Bacilli isu;DNA_repair,_bacterial_RecFOR_pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.442","peg","scaffold1|size1664507_316691_317653",316691,317653,"+","Uncharacterized protein YppC","FIG00012860","isu;Control_of_cell_elongation_-_division_cycle_in_Bacilli"]
["scaffold1|size1664507","fig|6666666.156949.peg.443","peg","scaffold1|size1664507_317812_317678",317812,317678,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.444","peg","scaffold1|size1664507_317981_318226",317981,318226,"+","Uncharacterized protein yppD","FIG01231143","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.445","peg","scaffold1|size1664507_318272_318643",318272,318643,"+","FIG01226164: hypothetical protein","FIG01226163","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.446","peg","scaffold1|size1664507_318870_318682",318870,318682,"-","FIG01225233: hypothetical protein","FIG01225232","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.447","peg","scaffold1|size1664507_319058_319435",319058,319435,"+","Spore coat protein","FIG01317036","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.448","peg","scaffold1|size1664507_319875_319456",319875,319456,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.449","peg","scaffold1|size1664507_319962_320519",319962,320519,"+","PTS system, glucose-specific IIA component","FIG00668821","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.450","peg","scaffold1|size1664507_320622_322871",320622,322871,"+","ATP-dependent RNA helicase","FIG01231651","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.451","peg","scaffold1|size1664507_322887_324128",322887,324128,"+","Predicted exonuclease","FIG01228320","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.452","peg","scaffold1|size1664507_324229_324357",324229,324357,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.453","peg","scaffold1|size1664507_324753_325301",324753,325301,"+","FIG005686: hypothetical protein","FIG00005686","icw(2);Control_of_cell_elongation_-_division_cycle_in_Bacilli"]
["scaffold1|size1664507","fig|6666666.156949.peg.454","peg","scaffold1|size1664507_325377_325673",325377,325673,"+","Cell division protein GpsB, coordinates the switch between cylindrical and septal cell wall synthesis by re-localization of PBP1","FIG00001726","isu;Control_of_cell_elongation_-_division_cycle_in_Bacilli"]
["scaffold1|size1664507","fig|6666666.156949.peg.455","peg","scaffold1|size1664507_326220_327377",326220,327377,"+","FIG001721: Predicted N6-adenine-specific DNA methylase","FIG00001721","icw(1);Control_of_cell_elongation_-_division_cycle_in_Bacilli"]
["scaffold1|size1664507","fig|6666666.156949.peg.456","peg","scaffold1|size1664507_327746_327937",327746,327937,"+","YptA","FIG01229387","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.457","peg","scaffold1|size1664507_328040_329965",328040,329965,"+","DinG family ATP-dependent helicase YpvA","FIG00006803","isu;DNA_repair,_bacterial_DinG_and_relatives"]
["scaffold1|size1664507","fig|6666666.156949.peg.458","peg","scaffold1|size1664507_330771_330007",330771,330007,"-","2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)","NA","icw(5);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.459","peg","scaffold1|size1664507_331600_330773",331600,330773,"-","4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)","FIG00003227","icw(4);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.460","peg","scaffold1|size1664507_331822_332841",331822,332841,"+","Transcriptional regulator KdgR, KDG operon repressor","FIG00096162","icw(2);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.461","peg","scaffold1|size1664507_332879_333853",332879,333853,"+","2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)","FIG00133209","icw(3);D-Galacturonate_and_D-Glucuronate_Utilization isu;Entner-Doudoroff_Pathway isu;D-gluconate_and_ketogluconates_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.462","peg","scaffold1|size1664507_333855_334445",333855,334445,"+","4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)","NA","isu;D-Galacturonate_and_D-Glucuronate_Utilization icw(1);Entner-Doudoroff_Pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.463","peg","scaffold1|size1664507_334490_335482",334490,335482,"+","2-keto-3-deoxygluconate permease (KDG permease)","FIG00006715","icw(1);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.464","peg","scaffold1|size1664507_335595_337100",335595,337100,"+","Thermostable carboxypeptidase 1 (EC 3.4.17.19)","FIG00229345","isu;Metallocarboxypeptidases_(EC_3.4.17.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.465","peg","scaffold1|size1664507_337431_338015",337431,338015,"+","Xanthine phosphoribosyltransferase (EC 2.4.2.22)","FIG00001449","isu;Purine_conversions isu;Xanthine_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.466","peg","scaffold1|size1664507_338012_339328",338012,339328,"+","Xanthine permease","NA","icw(1);Xanthine_Metabolism_in_Bacteria idu(3);Purine_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.467","peg","scaffold1|size1664507_339401_340498",339401,340498,"+","Chalcone synthase (EC 2.3.1.74)","FIG00443156","isu;Flavanone_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.468","peg","scaffold1|size1664507_340502_341008",340502,341008,"+","Alkylpyrone O-methyltransferase (B. subtilis BpsB)","FIG00672893","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.469","peg","scaffold1|size1664507_341344_344925",341344,344925,"+","Uncharacterized protein Bsub YpbR","FIG00673969","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.470","peg","scaffold1|size1664507_344990_345247",344990,345247,"+","FIG00675519: hypothetical protein","FIG01233303","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.471","peg","scaffold1|size1664507_345322_345468",345322,345468,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.472","peg","scaffold1|size1664507_345569_346459",345569,346459,"+","Probable 5'-3' exonuclease Bsu YpcP","NA","isu;DNA_replication_strays"]
["scaffold1|size1664507","fig|6666666.156949.peg.473","peg","scaffold1|size1664507_346595_346467",346595,346467,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.474","peg","scaffold1|size1664507_347035_346637",347035,346637,"-","Ribonuclease HI, Bacillus nonfunctional homolog","FIG00010407","isu;Ribonuclease_H"]
["scaffold1|size1664507","fig|6666666.156949.peg.475","peg","scaffold1|size1664507_347724_347035",347724,347035,"-","Putative preQ0 transporter","FIG00002792","isu;Queuosine-Archaeosine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.476","peg","scaffold1|size1664507_347807_348487",347807,348487,"+","Uncharacterized protein YpeP","FIG01226343","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.477","peg","scaffold1|size1664507_348480_348662",348480,348662,"+","Glycerate kinase (EC 2.7.1.31)","FIG01320952","idu(1);Glycerate_metabolism idu(1);Serine-glyoxylate_cycle idu(1);Glycine_and_Serine_Utilization idu(1);Allantoin_Utilization idu(1);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism idu(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo"]
["scaffold1|size1664507","fig|6666666.156949.peg.478","peg","scaffold1|size1664507_348959_348690",348959,348690,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.479","peg","scaffold1|size1664507_349114_349296",349114,349296,"+","activation of degradative enzymes (aprE, nprE, sacB)","FIG01228306","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.480","peg","scaffold1|size1664507_349548_349348",349548,349348,"-","Cold shock protein CspD","NA","idu(1);Cold_shock,_CspA_family_of_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.481","peg","scaffold1|size1664507_350939_349791",350939,349791,"-","diglucosyldiacylglycerol synthase (LTA membrane anchor synthesis)","FIG00010267","idu(1);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.482","peg","scaffold1|size1664507_351183_351055",351183,351055,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.483","peg","scaffold1|size1664507_352075_351170",352075,351170,"-","Homoserine O-succinyltransferase (EC 2.3.1.46)","FIG00001106","isu;Methionine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.484","peg","scaffold1|size1664507_352418_352900",352418,352900,"+","Glutathione peroxidase family protein","FIG00021745","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.485","peg","scaffold1|size1664507_352916_353533",352916,353533,"+","HD domain protein","FIG01323403","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.486","peg","scaffold1|size1664507_353593_354726",353593,354726,"+","PBS lyase HEAT-like repeat domain protein","FIG01324582","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.487","peg","scaffold1|size1664507_355015_356691",355015,356691,"+","Dihydroxy-acid dehydratase (EC 4.2.1.9)","FIG00138258","isu;Branched-Chain_Amino_Acid_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.488","peg","scaffold1|size1664507_356798_357232",356798,357232,"+","FIG01226173: hypothetical protein","FIG01108138","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.489","peg","scaffold1|size1664507_357274_358047",357274,358047,"+","Protein-L-isoD(D-D) O-methyltransferase","FIG01315585","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.490","peg","scaffold1|size1664507_358334_358918",358334,358918,"+","FIG01231694: hypothetical protein","FIG01231691","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.491","peg","scaffold1|size1664507_358936_359469",358936,359469,"+","Low temperature requirement C protein","FIG01350066","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.492","peg","scaffold1|size1664507_359612_360118",359612,360118,"+","Dihydrofolate reductase (EC 1.5.1.3)","FIG00000048","idu(2);5-FCL-like_protein idu(2);Folate_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.493","peg","scaffold1|size1664507_360119_360739",360119,360739,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.494","peg","scaffold1|size1664507_361420_360779",361420,360779,"-","COG1272: Predicted membrane protein hemolysin III homolog","FIG01323667","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.495","peg","scaffold1|size1664507_362436_361441",362436,361441,"-","Nitrogen regulation protein NR(I)","FIG00003546","isu;Ammonia_assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.496","peg","scaffold1|size1664507_362685_363953",362685,363953,"+","Threonine dehydratase biosynthetic (EC 4.3.1.19)","FIG00001004","isu;Branched-Chain_Amino_Acid_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.497","peg","scaffold1|size1664507_364039_364290",364039,364290,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.498","peg","scaffold1|size1664507_364429_365019",364429,365019,"+","Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone","FIG00064434","isu;Biogenesis_of_cytochrome_c_oxidases"]
["scaffold1|size1664507","fig|6666666.156949.peg.499","peg","scaffold1|size1664507_365097_365864",365097,365864,"+","FIG006988: Lipase/Acylhydrolase with GDSL-like motif","FIG00006988","icw(1);CBSS-370552.3.peg.1240"]
["scaffold1|size1664507","fig|6666666.156949.peg.500","peg","scaffold1|size1664507_365874_366437",365874,366437,"+","YfaA","FIG00137613","isu;CBSS-370552.3.peg.1240"]
["scaffold1|size1664507","fig|6666666.156949.peg.501","peg","scaffold1|size1664507_366450_366644",366450,366644,"+","Uncharacterized protein ypmT","FIG01328244","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.502","peg","scaffold1|size1664507_366716_368053",366716,368053,"+","Na+ driven multidrug efflux pump","FIG01199987","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.503","peg","scaffold1|size1664507_368528_368103",368528,368103,"-","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.504","peg","scaffold1|size1664507_368660_369193",368660,369193,"+","Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)","FIG00002199","isu;Peptide_methionine_sulfoxide_reductase isu;Putative_sugar_ABC_transporter_(ytf_cluster)"]
["scaffold1|size1664507","fig|6666666.156949.peg.505","peg","scaffold1|size1664507_369194_369628",369194,369628,"+","Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12)","NA","icw(1);Peptide_methionine_sulfoxide_reductase isu;Unknown_carbohydrate_utilization_(_cluster_Ydj_)"]
["scaffold1|size1664507","fig|6666666.156949.peg.506","peg","scaffold1|size1664507_370697_369672",370697,369672,"-","UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)","FIG00003715","idu(1);N-linked_Glycosylation_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.507","peg","scaffold1|size1664507_371068_372216",371068,372216,"+","Phy( EC:3.1.3.8 )","FIG01231263","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.508","peg","scaffold1|size1664507_373144_372287",373144,372287,"-","involved in maturation of the outermost layer of the spore","FIG01234495","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.509","peg","scaffold1|size1664507_373648_373247",373648,373247,"-","involved in maturation of the outermost layer of the spore","FIG01234495","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.510","peg","scaffold1|size1664507_373853_374158",373853,374158,"+","involved in maturation of the outermost layer of the spore","FIG01234495","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.511","peg","scaffold1|size1664507_374223_375503",374223,375503,"+","spore coat polysaccharide synthesis","FIG01228374","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.512","peg","scaffold1|size1664507_375532_376311",375532,376311,"+","CgeE","FIG01230817","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.513","peg","scaffold1|size1664507_376391_376504",376391,376504,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.514","peg","scaffold1|size1664507_376498_376653",376498,376653,"+","FIG01236913: hypothetical protein","FIG01346872","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.515","peg","scaffold1|size1664507_376634_377968",376634,377968,"+","Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)","FIG00012547","idu(2);Biotin_biosynthesis_Experimental idu(2);Biotin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.516","peg","scaffold1|size1664507_377975_378664",377975,378664,"+","Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8)","FIG00005698","icw(1);Acetyl-CoA_fermentation_to_Butyrate"]
["scaffold1|size1664507","fig|6666666.156949.peg.517","peg","scaffold1|size1664507_378649_379302",378649,379302,"+","Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8)","FIG00622136","isu;Acetyl-CoA_fermentation_to_Butyrate"]
["scaffold1|size1664507","fig|6666666.156949.peg.518","peg","scaffold1|size1664507_379317_380621",379317,380621,"+","Acetylornithine deacetylase (EC 3.5.1.16)","FIG00020897","isu;Arginine_Biosynthesis_--_gjo isu;Arginine_Biosynthesis_extended"]
["scaffold1|size1664507","fig|6666666.156949.peg.519","peg","scaffold1|size1664507_380599_381426",380599,381426,"+","Beta-lysine acetyltransferase (EC 2.3.1.-)","FIG00012793","isu;Lysine_degradation isu;Lysine_fermentation"]
["scaffold1|size1664507","fig|6666666.156949.peg.520","peg","scaffold1|size1664507_381455_382870",381455,382870,"+","Lysine 2,3-aminomutase (EC 5.4.3.2)","FIG00134830","icw(1);Lysine_degradation icw(1);Lysine_fermentation"]
["scaffold1|size1664507","fig|6666666.156949.peg.521","peg","scaffold1|size1664507_382867_383145",382867,383145,"+","FIG01225564: hypothetical protein","FIG01225563","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.522","peg","scaffold1|size1664507_383232_383456",383232,383456,"+","FIG00673484: hypothetical protein","FIG01964563","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.523","peg","scaffold1|size1664507_383604_384284",383604,384284,"+","IG hypothetical 18022","FIG01316247","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.524","peg","scaffold1|size1664507_384424_384281",384424,384281,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.525","peg","scaffold1|size1664507_384543_384719",384543,384719,"+","FIG01227129: hypothetical protein","FIG01227128","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.526","peg","scaffold1|size1664507_384796_385407",384796,385407,"+","PAP2 family protein","FIG01226669","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.527","peg","scaffold1|size1664507_385471_385782",385471,385782,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.528","peg","scaffold1|size1664507_385947_385822",385947,385822,"-","FIG00673439: hypothetical protein","FIG00673438","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.529","peg","scaffold1|size1664507_386089_385970",386089,385970,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.530","peg","scaffold1|size1664507_386149_386850",386149,386850,"+","Purine nucleoside phosphorylase (EC 2.4.2.1)","FIG00000659","idu(2);Purine_conversions idu(2);Adenosyl_nucleosidases idu(2);Deoxyribose_and_Deoxynucleoside_Catabolism idu(2);pyrimidine_conversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.531","peg","scaffold1|size1664507_387009_386857",387009,386857,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.532","peg","scaffold1|size1664507_386933_387754",386933,387754,"+","D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","FIG00561498","idu(5);Murein_Hydrolases idu(5);Peptidoglycan_Biosynthesis idu(5);CBSS-84588.1.peg.1247 idu(5);Metallocarboxypeptidases_(EC_3.4.17.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.533","peg","scaffold1|size1664507_388076_387825",388076,387825,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.534","peg","scaffold1|size1664507_388865_388164",388865,388164,"-","Putative methyltransferase YodH","FIG01327939","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.535","peg","scaffold1|size1664507_389018_390418",389018,390418,"+","Carboxyl-terminal protease (EC 3.4.21.102)","FIG00000946","idu(1);CBSS-224911.1.peg.435 idu(1);Phosphoglycerate_mutase_protein_family"]
["scaffold1|size1664507","fig|6666666.156949.peg.536","peg","scaffold1|size1664507_391941_390451",391941,390451,"-","Acetate permease ActP (cation/acetate symporter)","FIG01347644","idu(1);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold1|size1664507","fig|6666666.156949.peg.537","peg","scaffold1|size1664507_392141_391941",392141,391941,"-","YhjC","FIG01228408","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.538","peg","scaffold1|size1664507_392325_393236",392325,393236,"+","Glyoxalase family protein","FIG00007915","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.539","peg","scaffold1|size1664507_393252_393854",393252,393854,"+","Carboxylesterase (EC 3.1.1.1)","FIG01225679","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.540","peg","scaffold1|size1664507_394505_393897",394505,393897,"-","Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34)","FIG00731724","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.541","peg","scaffold1|size1664507_394635_394973",394635,394973,"+","Transcriptional regulator, HxlR family","FIG00906075","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.542","peg","scaffold1|size1664507_395375_395229",395375,395229,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.543","peg","scaffold1|size1664507_395751_395362",395751,395362,"-","4-oxalocrotonate tautomerase","FIG01240363","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.544","peg","scaffold1|size1664507_396116_397450",396116,397450,"+","Gluconate permease, Bsu4004 homolog","FIG00009417","idu(1);D-gluconate_and_ketogluconates_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.545","peg","scaffold1|size1664507_397535_397771",397535,397771,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.546","peg","scaffold1|size1664507_398266_397805",398266,397805,"-","FIG01229766: hypothetical protein","FIG01229761","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.547","peg","scaffold1|size1664507_398365_399261",398365,399261,"+","Protein rarD","FIG01057456","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.548","peg","scaffold1|size1664507_399337_399615",399337,399615,"+","FIG01230496: hypothetical protein","FIG01230494","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.549","peg","scaffold1|size1664507_399612_399962",399612,399962,"+","FIG011895: hypothetical protein","FIG00009385","icw(1);CBSS-158878.1.peg.567"]
["scaffold1|size1664507","fig|6666666.156949.peg.550","peg","scaffold1|size1664507_399981_400646",399981,400646,"+","FIG013761: LmbE family protein","FIG00009403","isu;CBSS-158878.1.peg.567"]
["scaffold1|size1664507","fig|6666666.156949.peg.551","peg","scaffold1|size1664507_401520_400672",401520,400672,"-","RsbR, positive regulator of sigma-B","FIG00001285","idu(5);SigmaB_stress_responce_regulation"]
["scaffold1|size1664507","fig|6666666.156949.peg.552","peg","scaffold1|size1664507_402894_401536",402894,401536,"-","Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps","FIG00000402","idu(1);Multidrug_Resistance_Efflux_Pumps"]
["scaffold1|size1664507","fig|6666666.156949.peg.553","peg","scaffold1|size1664507_403169_403783",403169,403783,"+","Diadenylate cyclase spyDAC; Bacterial checkpoint controller DisA with nucleotide-binding domain","FIG00006310","idu(1);Bacterial_checkpoint-control-related_cluster idu(1);Bacterial_checkpoint-control-related_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.554","peg","scaffold1|size1664507_404019_405236",404019,405236,"+","Macrolide glycosyltransferase (EC 2.4.1.-)","FIG01230003","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.555","peg","scaffold1|size1664507_405618_406862",405618,406862,"+","Gamma-D-glutamyl-meso-diaminopimelate peptidase (EC 3.4.19.11)","FIG00181748","idu(2);Omega_peptidases_(EC_3.4.19.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.556","peg","scaffold1|size1664507_406955_407545",406955,407545,"+","Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)","NA","isu;Oxidative_stress isu;Protection_from_Reactive_Oxygen_Species"]
["scaffold1|size1664507","fig|6666666.156949.peg.557","peg","scaffold1|size1664507_407633_408523",407633,408523,"+","Nitric oxide reductase activation protein NorQ","FIG00133744","icw(1);Denitrification icw(1);Denitrifying_reductase_gene_clusters"]
["scaffold1|size1664507","fig|6666666.156949.peg.558","peg","scaffold1|size1664507_408534_410450",408534,410450,"+","Nitric oxide reductase activation protein NorD","FIG00133628","isu;Denitrification isu;Denitrifying_reductase_gene_clusters"]
["scaffold1|size1664507","fig|6666666.156949.peg.559","peg","scaffold1|size1664507_410679_413513",410679,413513,"+","2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)","FIG00000541","icw(1);TCA_Cycle icw(1);Dehydrogenase_complexes"]
["scaffold1|size1664507","fig|6666666.156949.peg.560","peg","scaffold1|size1664507_413529_414782",413529,414782,"+","Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)","FIG00127747","isu;TCA_Cycle isu;Dehydrogenase_complexes"]
["scaffold1|size1664507","fig|6666666.156949.peg.561","peg","scaffold1|size1664507_415797_414832",415797,414832,"-","Sodium-dependent transporter","FIG01308542","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.562","peg","scaffold1|size1664507_416016_417353",416016,417353,"+","sodium-dependent transporter","FIG01338355","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.563","peg","scaffold1|size1664507_417991_417389,scaffold1|size1664507_417385_417350",417991,417350,"-","Superoxide dismutase [Fe] (EC 1.15.1.1)","FIG00133139","isu;Oxidative_stress isu;Protection_from_Reactive_Oxygen_Species"]
["scaffold1|size1664507","fig|6666666.156949.peg.564","peg","scaffold1|size1664507_420119_418221",420119,418221,"-","Squalene--hopene cyclase (EC 5.4.99.17)","FIG00002908","isu;CBSS-320388.3.peg.3759 isu;Hopanes"]
["scaffold1|size1664507","fig|6666666.156949.peg.565","peg","scaffold1|size1664507_421707_420220",421707,420220,"-","Aldehyde dehydrogenase (EC 1.2.1.3)","FIG01292786","idu(4);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate idu(4);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(4);Methylglyoxal_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.566","peg","scaffold1|size1664507_421937_422140",421937,422140,"+","FIG01230826: hypothetical protein","FIG01230825","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.567","peg","scaffold1|size1664507_422496_422840",422496,422840,"+","CDS_ID OB3216","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.568","peg","scaffold1|size1664507_423167_422934",423167,422934,"-","FIG01232811: hypothetical protein","FIG01232809","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.569","peg","scaffold1|size1664507_423435_423172",423435,423172,"-","YozN","FIG01228522","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.570","peg","scaffold1|size1664507_423502_423978",423502,423978,"+","FIG01228906: hypothetical protein","FIG01228905","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.571","peg","scaffold1|size1664507_424192_423965",424192,423965,"-","FIG01233217: hypothetical protein","FIG01233216","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.572","peg","scaffold1|size1664507_424270_424602",424270,424602,"+","Uncharacterized protein yocL","FIG01231346","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.573","peg","scaffold1|size1664507_424677_425168",424677,425168,"+","YocK","FIG01233109","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.574","peg","scaffold1|size1664507_425320_425946",425320,425946,"+","FMN-dependent NADH-azoreductase","FIG00553659","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.575","peg","scaffold1|size1664507_425985_426167",425985,426167,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.576","peg","scaffold1|size1664507_426433_426263",426433,426263,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.577","peg","scaffold1|size1664507_426511_428286",426511,428286,"+","ATP-dependent DNA helicase RecQ","FIG00000422","isu;DNA-replication isu;DNA_repair,_bacterial_RecFOR_pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.578","peg","scaffold1|size1664507_428534_429397",428534,429397,"+","Cell wall-binding protein","FIG00615230","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.579","peg","scaffold1|size1664507_430598_429999",430598,429999,"-","putative two-component system response regulator","FIG01124340","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.580","peg","scaffold1|size1664507_431729_430617",431729,430617,"-","sensor histidine kinase","FIG00431356","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.581","peg","scaffold1|size1664507_432907_431849",432907,431849,"-","Fatty-acid desaturase (EC 1.14.99.-)","FIG01236222","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.582","peg","scaffold1|size1664507_434047_433070",434047,433070,"-","Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)","FIG00004788","idu(1);Murein_Hydrolases idu(1);Recycling_of_Peptidoglycan_Amino_Acids idu(1);Metallocarboxypeptidases_(EC_3.4.17.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.583","peg","scaffold1|size1664507_434608_434111",434608,434111,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.584","peg","scaffold1|size1664507_434722_435561",434722,435561,"+","FIG01236399: hypothetical protein","FIG01236398","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.585","peg","scaffold1|size1664507_435698_436234",435698,436234,"+","FIG01234361: hypothetical protein","FIG01234358","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.586","peg","scaffold1|size1664507_437001_436324",437001,436324,"-","Pneumococcal vaccine antigen A homolog","FIG01309443","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.587","peg","scaffold1|size1664507_437196_437519",437196,437519,"+","Transcriptional regulator, ArsR family","FIG00003845","idu(4);CBSS-1085.1.peg.1363"]
["scaffold1|size1664507","fig|6666666.156949.peg.588","peg","scaffold1|size1664507_438091_437546",438091,437546,"-","Protein csk22","FIG01230920","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.589","peg","scaffold1|size1664507_438296_439234",438296,439234,"+","Transcriptional regulator, DeoR family","FIG00743946","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.590","peg","scaffold1|size1664507_439288_439770",439288,439770,"+","Transcriptional regulator, AraC family","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.591","peg","scaffold1|size1664507_439846_440547",439846,440547,"+","metallo-beta-lactamase family protein","FIG00882049","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.592","peg","scaffold1|size1664507_440583_441128",440583,441128,"+","Transcriptional regulator, TetR family","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.593","peg","scaffold1|size1664507_441206_441949",441206,441949,"+","N-acetylglutamate synthase (EC 2.3.1.1)","FIG00001206","idu(1);Arginine_Biosynthesis_--_gjo idu(1);Arginine_Biosynthesis_extended"]
["scaffold1|size1664507","fig|6666666.156949.peg.594","peg","scaffold1|size1664507_441970_442689",441970,442689,"+","FIG01242766: hypothetical protein","FIG01242765","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.595","peg","scaffold1|size1664507_442754_443086",442754,443086,"+","Protein secretion chaperonin CsaA","FIG00013433","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.596","peg","scaffold1|size1664507_443173_443304",443173,443304,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.597","peg","scaffold1|size1664507_444834_443335",444834,443335,"-","Tryptophan 2-monooxygenase (EC 1.13.12.3)","FIG00003525","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.598","peg","scaffold1|size1664507_444890_445456",444890,445456,"+","FIG01239499: hypothetical protein","FIG01239497","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.599","peg","scaffold1|size1664507_445557_445829",445557,445829,"+","Putative toxin component near putative ESAT-related proteins, repetitive / Repetitive hypothetical protein near ESAT cluster, SA0282 homolog","FIG00149320","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.600","peg","scaffold1|size1664507_447905_446775",447905,446775,"-","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.601","peg","scaffold1|size1664507_449389_449733",449389,449733,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.602","peg","scaffold1|size1664507_449786_449923",449786,449923,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.603","peg","scaffold1|size1664507_450363_449998",450363,449998,"-","FIG01235742: hypothetical protein","FIG01235741","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.604","peg","scaffold1|size1664507_450454_450642",450454,450642,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.605","peg","scaffold1|size1664507_450792_451493",450792,451493,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.606","peg","scaffold1|size1664507_451670_451942",451670,451942,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.607","peg","scaffold1|size1664507_452827_452991",452827,452991,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.608","peg","scaffold1|size1664507_453041_453673",453041,453673,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.609","peg","scaffold1|size1664507_454214_454453",454214,454453,"+","Predicted membrane protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.610","peg","scaffold1|size1664507_454750_454619",454750,454619,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.611","peg","scaffold1|size1664507_455084_455725",455084,455725,"+","Chain A, Crystal Structure Of A Mesophilic Xylanase A From Bacillus Subtilis 1a1","FIG01504186","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.612","peg","scaffold1|size1664507_456396_458996",456396,458996,"+","Phosphoenolpyruvate synthase (EC 2.7.9.2)","FIG00000789","idu(1);Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes idu(1);Glycolysis_and_Gluconeogenesis idu(1);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold1|size1664507","fig|6666666.156949.peg.613","peg","scaffold1|size1664507_459529_459287",459529,459287,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.614","peg","scaffold1|size1664507_460264_460590",460264,460590,"+","YobA","FIG01521547","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.615","peg","scaffold1|size1664507_461868_461077",461868,461077,"-","Beta-lactamase class A","FIG00005710","isu;Beta-lactamase"]
["scaffold1|size1664507","fig|6666666.156949.peg.616","peg","scaffold1|size1664507_461867_462049",461867,462049,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.617","peg","scaffold1|size1664507_462223_462855",462223,462855,"+","ThiJ/PfpI family protein","FIG00015923","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.618","peg","scaffold1|size1664507_463119_463550",463119,463550,"+","YoaW","FIG01529724","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.619","peg","scaffold1|size1664507_464609_463731",464609,463731,"-","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","idu(11);Queuosine-Archaeosine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.620","peg","scaffold1|size1664507_464710_465582",464710,465582,"+","LysR family transcriptional regulator STM2281","FIG00011906","idu(1);LysR-family_proteins_in_Salmonella_enterica_Typhimurium"]
["scaffold1|size1664507","fig|6666666.156949.peg.621","peg","scaffold1|size1664507_466500_465706",466500,465706,"-","membrane protein, putative","FIG00439698","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.622","peg","scaffold1|size1664507_466865_466629",466865,466629,"-","Transcriptional regulator, Cro/CI family","FIG01232116","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.623","peg","scaffold1|size1664507_467357_466875",467357,466875,"-","putative membrane protein","FIG00092051","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.624","peg","scaffold1|size1664507_467704_468615",467704,468615,"+","Vancomycin B-type resistance protein VanW","FIG00003433","isu;Resistance_to_Vancomycin"]
["scaffold1|size1664507","fig|6666666.156949.peg.625","peg","scaffold1|size1664507_468717_468917,scaffold1|size1664507_468917_468967",468717,468967,"+","Uncharacterized protein yozF precursor","FIG01334530","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.626","peg","scaffold1|size1664507_469229_469708",469229,469708,"+","GCN5-related N-acetyltransferase","FIG01272034","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.627","peg","scaffold1|size1664507_469867_470361",469867,470361,"+","YoaO","FIG01228124","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.628","peg","scaffold1|size1664507_470485_471663",470485,471663,"+","Oxalate decarboxylase oxdD (EC 4.1.1.2)","FIG01232963","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.629","peg","scaffold1|size1664507_471879_472184",471879,472184,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.630","peg","scaffold1|size1664507_473203_472520",473203,472520,"-","FIG01230994: hypothetical protein","FIG01336779","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.631","peg","scaffold1|size1664507_474497_473460",474497,473460,"-","Pectin lyase (EC 4.2.2.10)","FIG00905339","isu;D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.632","peg","scaffold1|size1664507_474669_475346",474669,475346,"+","FIG01237212: hypothetical protein","FIG01237210","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.633","peg","scaffold1|size1664507_475616_476314",475616,476314,"+","Extracellular endoglucanase","FIG01381024","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.634","peg","scaffold1|size1664507_477802_476351",477802,476351,"-","4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)","FIG00138613","isu;Aromatic_Amin_Catabolism isu;4-Hydroxyphenylacetic_acid_catabolic_pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.635","peg","scaffold1|size1664507_478129_479814",478129,479814,"+","putative methyl-accepting chemotaxis protein YoaH","FIG01231826","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.636","peg","scaffold1|size1664507_480223_479930",480223,479930,"-","YozQ","FIG01235308","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.637","peg","scaffold1|size1664507_480389_480267",480389,480267,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.638","peg","scaffold1|size1664507_480638_480763",480638,480763,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.639","peg","scaffold1|size1664507_481057_482076",481057,482076,"+","Predicted transcriptional regulator of the myo-inositol catabolic operon","FIG00002272","icw(1);Inositol_catabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.640","peg","scaffold1|size1664507_482558_483487",482558,483487,"+","Inosose dehydratase (EC 4.2.1.44)","FIG00001357","icw(2);Inositol_catabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.641","peg","scaffold1|size1664507_483505_484671",483505,484671,"+","Myo-inositol 2-dehydrogenase (EC 1.1.1.18)","FIG01583289","icw(3);Inositol_catabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.642","peg","scaffold1|size1664507_484711_486165",484711,486165,"+","Major myo-inositol transporter IolT","FIG00080381","idu(4);Inositol_catabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.643","peg","scaffold1|size1664507_486563_486243",486563,486243,"-","YoaF","FIG01245368","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.644","peg","scaffold1|size1664507_488714_486672",488714,486672,"-","Anaerobic dehydrogenases, typically selenocysteine-containing","FIG00041382","idu(1);Anaerobic_respiratory_reductases"]
["scaffold1|size1664507","fig|6666666.156949.peg.645","peg","scaffold1|size1664507_489105_488968",489105,488968,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.646","peg","scaffold1|size1664507_489077_490078",489077,490078,"+","Hydroxypyruvate reductase (EC 1.1.1.81)","FIG01304624","idu(1);Glycolate,_glyoxylate_interconversions idu(1);Glycerate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.647","peg","scaffold1|size1664507_490096_491559",490096,491559,"+","FIG01232845: hypothetical protein","FIG01232844","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.648","peg","scaffold1|size1664507_491656_492900",491656,492900,"+","alpha-ketoglutarate permease","FIG01378565","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.649","peg","scaffold1|size1664507_493069_492866",493069,492866,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.650","peg","scaffold1|size1664507_493296_493847",493296,493847,"+","MarR-family transcriptional regulator","FIG01332748","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.651","peg","scaffold1|size1664507_493863_494801",493863,494801,"+","ABC-type MDR transporter, ATPase component","FIG01503972","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.652","peg","scaffold1|size1664507_494811_495557",494811,495557,"+","Uncharactecterized conserved membrane protein, possible ABC-type MDR permease","FIG01319267","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.653","peg","scaffold1|size1664507_495551_496543",495551,496543,"+","FIG028593: membrane protein","FIG01963607","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.654","peg","scaffold1|size1664507_497217_496684",497217,496684,"-","acetyltransferase, GNAT family","FIG01315364","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.655","peg","scaffold1|size1664507_498031_497261",498031,497261,"-","FIG01238402: hypothetical protein","FIG01238400","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.656","peg","scaffold1|size1664507_498406_498098",498406,498098,"-","FIG01235503: hypothetical protein","FIG01235500","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.657","peg","scaffold1|size1664507_498557_499273",498557,499273,"+","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)","FIG00621114","idu(6);CBSS-246196.1.peg.364 idu(6);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.658","peg","scaffold1|size1664507_499569_499940",499569,499940,"+","replication terminator protein","FIG01236155","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.659","peg","scaffold1|size1664507_500051_499926",500051,499926,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.660","peg","scaffold1|size1664507_500166_500981",500166,500981,"+","Pyrroline-5-carboxylate reductase (EC 1.5.1.2)","FIG00133325","idu(1);Proline_Synthesis idu(1);A_Hypothetical_Protein_Related_to_Proline_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.661","peg","scaffold1|size1664507_500978_502093",500978,502093,"+","Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA","FIG00000351","icw(1);Proline_Synthesis icw(1);Proline_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.662","peg","scaffold1|size1664507_503046_502144",503046,502144,"-","GltC, transcription activator of glutamate synthase operon","FIG00009634","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.663","peg","scaffold1|size1664507_503193_507755",503193,507755,"+","Glutamate synthase [NADPH] large chain (EC 1.4.1.13)","FIG00000539","isu;Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis icw(1);Ammonia_assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.664","peg","scaffold1|size1664507_507772_509253",507772,509253,"+","Glutamate synthase [NADPH] small chain (EC 1.4.1.13)","FIG00007957","icw(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis isu;Ammonia_assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.665","peg","scaffold1|size1664507_510299_509310",510299,509310,"-","Alcohol dehydrogenase (EC 1.1.1.1)","FIG01007502","idu(2);5-FCL-like_protein idu(2);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(2);Fermentations:_Mixed_acid idu(2);Butanol_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.666","peg","scaffold1|size1664507_510428_511285",510428,511285,"+","Transcriptional regulator, LysR family","FIG01304134","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.667","peg","scaffold1|size1664507_513211_511448",513211,511448,"-","Gamma-glutamyltranspeptidase (EC 2.3.2.2)","FIG00005992","idu(1);Utilization_of_glutathione_as_a_sulphur_source idu(1);Poly-gamma-glutamate_biosynthesis idu(1);Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.668","peg","scaffold1|size1664507_513396_513626",513396,513626,"+","DNA binding domain, excisionase family","FIG01311529","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.669","peg","scaffold1|size1664507_513942_514487",513942,514487,"+","site-specific recombinase, phage integrase family","FIG01307911","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.8","rna","scaffold1|size1664507_514540_514612",514540,514612,"+","tRNA-Arg-CCT","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.670","peg","scaffold1|size1664507_515251_514706",515251,514706,"-","YoeB","FIG01241209","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.671","peg","scaffold1|size1664507_515537_516928",515537,516928,"+","Na+ driven multidrug efflux pump","FIG01199987","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.672","peg","scaffold1|size1664507_517062_518039",517062,518039,"+","YoxA","FIG01239959","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.673","peg","scaffold1|size1664507_518073_519548",518073,519548,"+","D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","FIG00561498","idu(5);Murein_Hydrolases idu(5);Peptidoglycan_Biosynthesis idu(5);CBSS-84588.1.peg.1247 idu(5);Metallocarboxypeptidases_(EC_3.4.17.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.674","peg","scaffold1|size1664507_522773_527710",522773,527710,"+","FIG01233961: hypothetical protein","FIG01233959","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.675","peg","scaffold1|size1664507_527739_531557",527739,531557,"+","FIG01239039: hypothetical protein","FIG01239036","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.676","peg","scaffold1|size1664507_531665_532057",531665,532057,"+","YngL","FIG01228982","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.677","peg","scaffold1|size1664507_532193_533725",532193,533725,"+","COG1649 predicted glycoside hydrolase","FIG01317966","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.678","peg","scaffold1|size1664507_533867_534007",533867,534007,"+","FIG01234168: hypothetical protein","FIG01234167","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.679","peg","scaffold1|size1664507_534098_535240",534098,535240,"+","Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)","FIG00138712","icw(3);HMG_CoA_Synthesis icw(2);Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.680","peg","scaffold1|size1664507_535284_536933",535284,536933,"+","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) / Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)","FIG01304894","idu(2);n-Phenylalkanoic_acid_degradation idu(2);Fatty_acid_metabolism_cluster idu(2);Biotin_biosynthesis icw(4);HMG_CoA_Synthesis icw(6);Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.681","peg","scaffold1|size1664507_536943_538277",536943,538277,"+","Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)","FIG00006800","icw(3);HMG_CoA_Synthesis icw(3);Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.682","peg","scaffold1|size1664507_538292_538513",538292,538513,"+","Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase","FIG00007035","icw(6);HMG_CoA_Synthesis icw(5);Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.683","peg","scaffold1|size1664507_538528_539427",538528,539427,"+","Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)","FIG00000963","isu;HMG_CoA_Synthesis isu;Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.684","peg","scaffold1|size1664507_539448_540230",539448,540230,"+","Methylglutaconyl-CoA hydratase (EC 4.2.1.18)","FIG00138403","idu(1);Benzoate_transport_and_degradation_cluster icw(1);HMG_CoA_Synthesis icw(1);Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.685","peg","scaffold1|size1664507_540247_541776",540247,541776,"+","Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)","FIG00138249","isu;Serine-glyoxylate_cycle icw(2);HMG_CoA_Synthesis icw(2);Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.686","peg","scaffold1|size1664507_541945_543144",541945,543144,"+","3'-to-5' oligoribonuclease B, Bacillus type","FIG00017465","isu;RNA_processing_and_degradation,_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.687","peg","scaffold1|size1664507_543789_543193",543789,543193,"-","FIG139438: lipoprotein B","FIG00060285","idu(1);Stationary_phase_repair_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.688","peg","scaffold1|size1664507_544755_543862",544755,543862,"-","UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)","FIG00000108","idu(2);Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.689","peg","scaffold1|size1664507_545208_544762",545208,544762,"-","YngA","FIG01430859","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.690","peg","scaffold1|size1664507_545885_547432",545885,547432,"+","Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)","FIG00475203","isu;D-Galacturonate_and_D-Glucuronate_Utilization isu;Xylose_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.691","peg","scaffold1|size1664507_547563_548831",547563,548831,"+","YnfF","FIG01234770","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.692","peg","scaffold1|size1664507_549361_549098",549361,549098,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.693","peg","scaffold1|size1664507_550935_549436",550935,549436,"-","FIG01233907: hypothetical protein","FIG01233903","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.694","peg","scaffold1|size1664507_552635_551238",552635,551238,"-","Amino-acid carrier protein AlsT","FIG01317592","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.695","peg","scaffold1|size1664507_552906_552793",552906,552793,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.696","peg","scaffold1|size1664507_553145_553498",553145,553498,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.697","peg","scaffold1|size1664507_553524_553649",553524,553649,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.698","peg","scaffold1|size1664507_556116_553696",556116,553696,"-","Topoisomerase IV subunit A (EC 5.99.1.-)","FIG00000425","icw(1);DNA_topoisomerases,_Type_II,_ATP-dependent icw(1);Resistance_to_fluoroquinolones"]
["scaffold1|size1664507","fig|6666666.156949.peg.699","peg","scaffold1|size1664507_558087_556120",558087,556120,"-","Topoisomerase IV subunit B (EC 5.99.1.-)","FIG00000439","isu;CBSS-342610.3.peg.1794 isu;DNA_topoisomerases,_Type_II,_ATP-dependent isu;Resistance_to_fluoroquinolones"]
["scaffold1|size1664507","fig|6666666.156949.peg.700","peg","scaffold1|size1664507_558275_558415",558275,558415,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.701","peg","scaffold1|size1664507_558893_558486",558893,558486,"-","Succinyl-CoA synthetase, alpha subunit-related enzymes","FIG00002678","isu;CBSS-83333.1.peg.946"]
["scaffold1|size1664507","fig|6666666.156949.peg.702","peg","scaffold1|size1664507_559063_559644",559063,559644,"+","Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY","FIG00000459","isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.703","peg","scaffold1|size1664507_559732_560019",559732,560019,"+","FIG01226527: hypothetical protein","FIG01226524","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.704","peg","scaffold1|size1664507_560349_560050",560349,560050,"-","FIG01227614: hypothetical protein","FIG00774815","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.705","peg","scaffold1|size1664507_560781_560365",560781,560365,"-","4-hydroxybenzoyl-CoA thioesterase family active site","FIG00002515","idu(1);Ton_and_Tol_transport_systems"]
["scaffold1|size1664507","fig|6666666.156949.peg.706","peg","scaffold1|size1664507_561117_560866",561117,560866,"-","Thioredoxin related protein","FIG01227608","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.707","peg","scaffold1|size1664507_561300_561154",561300,561154,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.708","peg","scaffold1|size1664507_561556_561365",561556,561365,"-","FIG01225314: hypothetical protein","FIG01225312","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.709","peg","scaffold1|size1664507_562083_561571",562083,561571,"-","Thiol:disulfide oxidoreductase related to ResA","FIG00618007","idu(1);Biogenesis_of_c-type_cytochromes idu(1);CBSS-196164.1.peg.461"]
["scaffold1|size1664507","fig|6666666.156949.peg.710","peg","scaffold1|size1664507_564884_562155",564884,562155,"-","Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)","FIG00138200","isu;TCA_Cycle isu;Glyoxylate_bypass isu;Methylcitrate_cycle isu;Serine-glyoxylate_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.711","peg","scaffold1|size1664507_565094_565258",565094,565258,"+","Small, acid-soluble spore protein O","FIG00010088","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.712","peg","scaffold1|size1664507_565290_565436",565290,565436,"+","Small, acid-soluble spore protein P","FIG01964506","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.713","peg","scaffold1|size1664507_565534_565908",565534,565908,"+","Spore coat protein M","FIG00012203","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.714","peg","scaffold1|size1664507_566143_566571",566143,566571,"+","alternate gene name: yoxJ","FIG01225813","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.715","peg","scaffold1|size1664507_567084_566602",567084,566602,"-","FIG01230056: hypothetical protein","FIG01230054","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.716","peg","scaffold1|size1664507_567534_567172",567534,567172,"-","Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY","FIG00000426","idu(1);Flagellar_motility idu(1);Two-component_regulatory_systems_in_Campylobacter idu(1);Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.717","peg","scaffold1|size1664507_568330_567623",568330,567623,"-","Cytochrome c-type biogenesis protein CcdA (DsbD analog)","FIG00133238","isu;Biogenesis_of_c-type_cytochromes isu;CBSS-196164.1.peg.461 isu;Periplasmic_disulfide_interchange isu;Sulfur_oxidation"]
["scaffold1|size1664507","fig|6666666.156949.peg.718","peg","scaffold1|size1664507_568532_568723",568532,568723,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.719","peg","scaffold1|size1664507_569015_568797",569015,568797,"-","UPF0154 membrane protein YoxG","FIG01108282","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.720","peg","scaffold1|size1664507_569547_569101",569547,569101,"-","alternate gene name: yoxF","FIG01311385","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.721","peg","scaffold1|size1664507_571703_569700",571703,569700,"-","Transketolase (EC 2.2.1.1)","NA","isu;Pentose_phosphate_pathway isu;Calvin-Benson_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.722","peg","scaffold1|size1664507_572105_571872",572105,571872,"-","FIG01227325: hypothetical protein","FIG01227324","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.723","peg","scaffold1|size1664507_572822_572169",572822,572169,"-","site-specific recombinase, resolvase family","FIG01342648","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.724","peg","scaffold1|size1664507_573152_572841",573152,572841,"-","ABC transport protein, sugar-binding component yneA","FIG01331701","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.725","peg","scaffold1|size1664507_573308_573925",573308,573925,"+","SOS-response repressor and protease LexA (EC 3.4.21.88)","FIG00000510","isu;DNA_repair,_bacterial isu;DNA_repair,_bacterial_UmuCD_system"]
["scaffold1|size1664507","fig|6666666.156949.peg.726","peg","scaffold1|size1664507_574897_574463",574897,574463,"-","Fosfomycin resistance protein FosB","FIG00014222","isu;Fosfomycin_resistance"]
["scaffold1|size1664507","fig|6666666.156949.peg.727","peg","scaffold1|size1664507_575045_574923",575045,574923,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.728","peg","scaffold1|size1664507_575106_575555",575106,575555,"+","FIG01228874: hypothetical protein","FIG01449731","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.729","peg","scaffold1|size1664507_576397_576344,scaffold1|size1664507_576340_575582",576397,575582,"-","YndL","FIG01243433","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.730","peg","scaffold1|size1664507_576932_576564",576932,576564,"-","FIG01231769: hypothetical protein","FIG01231767","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.731","peg","scaffold1|size1664507_578608_576968",578608,576968,"-","Arginine/ornithine antiporter ArcD","FIG00001166","idu(4);Arginine_and_Ornithine_Degradation idu(4);Arginine_Deiminase_Pathway idu(4);Polyamine_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.732","peg","scaffold1|size1664507_578757_578605",578757,578605,"-","FIG01244666: hypothetical protein","FIG01244664","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.733","peg","scaffold1|size1664507_578857_578982",578857,578982,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.734","peg","scaffold1|size1664507_579020_579139",579020,579139,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.735","peg","scaffold1|size1664507_580033_579227",580033,579227,"-","FIG01232947: hypothetical protein","FIG01232946","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.736","peg","scaffold1|size1664507_581374_580160",581374,580160,"-","Uncharacterized spore germination protein YndF","FIG01955930","isu;Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.737","peg","scaffold1|size1664507_582455_581364",582455,581364,"-","Uncharacterized spore germination protein YndE","FIG00142939","icw(1);Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.738","peg","scaffold1|size1664507_584044_582485",584044,582485,"-","Uncharacterized spore germination protein YndD","FIG01955956","icw(2);Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.739","peg","scaffold1|size1664507_584529_584341",584529,584341,"-","FIG01228440: hypothetical protein","FIG01322935","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.740","peg","scaffold1|size1664507_584689_584567",584689,584567,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.741","peg","scaffold1|size1664507_584838_585272",584838,585272,"+","FIG01235532: hypothetical protein","FIG01574691","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.742","peg","scaffold1|size1664507_585734_585336",585734,585336,"-","FIG01235259: hypothetical protein","FIG01812803","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.743","peg","scaffold1|size1664507_585910_585734",585910,585734,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.744","peg","scaffold1|size1664507_585989_586177",585989,586177,"+","Twin-arginine translocation protein TatAd","FIG01337951","idu(1);Twin-arginine_translocation_system"]
["scaffold1|size1664507","fig|6666666.156949.peg.745","peg","scaffold1|size1664507_586230_586247,scaffold1|size1664507_586251_586577",586230,586577,"+","Uncharacterized protein ynzH","FIG01653814","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.746","peg","scaffold1|size1664507_587343_588065",587343,588065,"+","FIG01239770: hypothetical protein","FIG01239766","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.747","peg","scaffold1|size1664507_589353_588514",589353,588514,"-","Thymidylate synthase (EC 2.1.1.45)","FIG00000398","isu;pyrimidine_conversions isu;Folate_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.748","peg","scaffold1|size1664507_589793_589629",589793,589629,"-","hypothetical protein","FIG01402705","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.749","peg","scaffold1|size1664507_589952_589794",589952,589794,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.750","peg","scaffold1|size1664507_590189_590449",590189,590449,"+","Spore coat protein C","FIG01344595","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.751","peg","scaffold1|size1664507_591199_590765",591199,590765,"-","Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)","FIG00000388","isu;Housecleaning_nucleoside_triphosphate_pyrophosphatases isu;Nudix_proteins_(nucleoside_triphosphate_hydrolases)"]
["scaffold1|size1664507","fig|6666666.156949.peg.752","peg","scaffold1|size1664507_591690_591229",591690,591229,"-","FIG01245112: hypothetical protein","FIG01245110","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.753","peg","scaffold1|size1664507_592119_592544",592119,592544,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.754","peg","scaffold1|size1664507_592975_594159",592975,594159,"+","Alanine racemase (EC 5.1.1.1)","FIG00001642","idu(1);Pyruvate_Alanine_Serine_Interconversions idu(1);Alanine_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.755","peg","scaffold1|size1664507_595634_594261",595634,594261,"-","Major myo-inositol transporter IolT","FIG00080381","idu(4);Inositol_catabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.756","peg","scaffold1|size1664507_596089_596364",596089,596364,"+","Phage-encoded chromosome degrading nuclease YokF","FIG00018543","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.757","peg","scaffold1|size1664507_598433_596934",598433,596934,"-","Xylulose kinase (EC 2.7.1.17)","FIG00000793","icw(1);Xylose_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.758","peg","scaffold1|size1664507_599921_598584",599921,598584,"-","Xylose isomerase (EC 5.3.1.5)","FIG00019456","isu;Xylose_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.759","peg","scaffold1|size1664507_600154_601317",600154,601317,"+","Xylose-responsive transcription regulator, ROK family","FIG00092279","icw(3);Xylose_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.760","peg","scaffold1|size1664507_603056_601455",603056,601455,"-","Beta-xylosidase (EC 3.2.1.37)","FIG00003086","icw(4);Xylose_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.761","peg","scaffold1|size1664507_604478_603087",604478,603087,"-","Xyloside transporter XynT","FIG00079740","icw(1);Xylose_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.762","peg","scaffold1|size1664507_605812_605342",605812,605342,"-","Phosphoribosylanthranilate isomerase like (EC 5.3.1.24)","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.763","peg","scaffold1|size1664507_606550_606275",606550,606275,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.764","peg","scaffold1|size1664507_606889_606593",606889,606593,"-","ynaF","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.765","peg","scaffold1|size1664507_607697_607056",607697,607056,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.766","peg","scaffold1|size1664507_608770_608258",608770,608258,"-","PhnO protein","FIG00004587","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.767","peg","scaffold1|size1664507_609627_609094",609627,609094,"-","Uncharacterized protein ynaB","FIG01354768","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.768","peg","scaffold1|size1664507_609963_609709",609963,609709,"-","YefM protein (antitoxin to YoeB)","FIG00006338","isu;Toxin-antitoxin_replicon_stabilization_systems"]
["scaffold1|size1664507","fig|6666666.156949.peg.769","peg","scaffold1|size1664507_611167_610094",611167,610094,"-","YNZF protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.770","peg","scaffold1|size1664507_611904_611416",611904,611416,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.771","peg","scaffold1|size1664507_614098_612764",614098,612764,"-","Glutamine synthetase type I (EC 6.3.1.2)","FIG00134889","isu;Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis isu;Peptidoglycan_Biosynthesis isu;Ammonia_assimilation isu;Glutamine_synthetases"]
["scaffold1|size1664507","fig|6666666.156949.peg.772","peg","scaffold1|size1664507_614564_614157",614564,614157,"-","Transcriptional regulator, MerR family","FIG00003460","isu;Cobalt-zinc-cadmium_resistance"]
["scaffold1|size1664507","fig|6666666.156949.peg.773","peg","scaffold1|size1664507_615939_614674",615939,614674,"-","Aluminum resistance protein","FIG00774347","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.774","peg","scaffold1|size1664507_617132_616233,scaffold1|size1664507_616231_616127",617132,616127,"-","GTP-binding protein HflX","FIG00000304","isu;Hfl_operon isu;Universal_GTPases"]
["scaffold1|size1664507","fig|6666666.156949.peg.775","peg","scaffold1|size1664507_618320_617352",618320,617352,"-","Stage V sporulation protein whose disruption leads to the production of immature spores (SpoVK)","FIG00015036","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.776","peg","scaffold1|size1664507_618473_618351",618473,618351,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.777","peg","scaffold1|size1664507_618472_618618",618472,618618,"+","FIG01233957: hypothetical protein","FIG01414952","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.778","peg","scaffold1|size1664507_618953_619720",618953,619720,"+","N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)","FIG00001385","idu(3);Murein_Hydrolases idu(3);Zinc_regulated_enzymes idu(3);Recycling_of_Peptidoglycan_Amino_Acids"]
["scaffold1|size1664507","fig|6666666.156949.peg.779","peg","scaffold1|size1664507_620404_619784",620404,619784,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.780","peg","scaffold1|size1664507_621443_620454",621443,620454,"-","Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)","FIG00000960","icw(2);Ribonucleotide_reduction"]
["scaffold1|size1664507","fig|6666666.156949.peg.781","peg","scaffold1|size1664507_623563_621461",623563,621461,"-","Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)","FIG00001069","idu(1);Ribonucleotide_reduction"]
["scaffold1|size1664507","fig|6666666.156949.peg.782","peg","scaffold1|size1664507_623915_623523",623915,623523,"-","Ribonucleotide reduction protein NrdI","FIG00001039","icw(1);Ribonucleotide_reduction"]
["scaffold1|size1664507","fig|6666666.156949.peg.783","peg","scaffold1|size1664507_624439_624158",624439,624158,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.784","peg","scaffold1|size1664507_624742_624470",624742,624470,"-","Uncharacterized protein ymzC precursor","FIG01234006","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.785","peg","scaffold1|size1664507_625159_624938",625159,624938,"-","RNA-binding protein Hfq","FIG00000583","isu;Hfl_operon isu;Polyadenylation_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.786","peg","scaffold1|size1664507_626143_625199",626143,625199,"-","tRNA dimethylallyltransferase (EC 2.5.1.75)","FIG00000196","isu;tRNA_modification_Bacteria isu;tRNA_processing"]
["scaffold1|size1664507","fig|6666666.156949.peg.787","peg","scaffold1|size1664507_626647_626243",626647,626243,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.788","peg","scaffold1|size1664507_626745_626990",626745,626990,"+","DnaJ-class molecular chaperone CbpA","FIG00027226","isu;Protein_chaperones"]
["scaffold1|size1664507","fig|6666666.156949.peg.789","peg","scaffold1|size1664507_627185_627442",627185,627442,"+","Multidrug resistance protein EbrA","FIG01344576","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.790","peg","scaffold1|size1664507_627456_627809",627456,627809,"+","Multidrug resistance protein EbrB","FIG01311023","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.791","peg","scaffold1|size1664507_628275_627823",628275,627823,"-","YMAD protein","FIG01343950","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.792","peg","scaffold1|size1664507_629052_628345",629052,628345,"-","phage-related protein YmaC","FIG01237515","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.793","peg","scaffold1|size1664507_629565_629332",629565,629332,"-","FIG01239721: hypothetical protein","FIG01239720","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.794","peg","scaffold1|size1664507_629904_631118",629904,631118,"+","alkaline serine protease","FIG01368116","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.795","peg","scaffold1|size1664507_631189_631070",631189,631070,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.796","peg","scaffold1|size1664507_631365_632054",631365,632054,"+","metallo-beta-lactamase family protein","FIG00882049","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.797","peg","scaffold1|size1664507_632133_632489",632133,632489,"+","FIG01239751: hypothetical protein","FIG01239749","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.798","peg","scaffold1|size1664507_632719_633936",632719,633936,"+","putative cytochrome P450 hydroxylase","FIG00032437","idu(3);Nitric_oxide_synthase"]
["scaffold1|size1664507","fig|6666666.156949.peg.799","peg","scaffold1|size1664507_641612_633981",641612,633981,"-","3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)","FIG01959124","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.800","peg","scaffold1|size1664507_658171_641627",658171,641627,"-","Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)","FIG00000319","idu(4);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.801","peg","scaffold1|size1664507_670961_658161",670961,658161,"-","polyketide synthase","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.802","peg","scaffold1|size1664507_684575_670977",684575,670977,"-","polyketide synthase of type I","FIG01290002","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.803","peg","scaffold1|size1664507_699699_684577",699699,684577,"-","polyketide synthase of type I","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.804","peg","scaffold1|size1664507_700492_699743",700492,699743,"-","Enoyl-CoA hydratase (EC 4.2.1.17)","FIG00033206","idu(3);n-Phenylalkanoic_acid_degradation idu(3);Polyhydroxybutyrate_metabolism idu(3);Isoleucine_degradation idu(3);Fatty_acid_metabolism_cluster idu(3);Butyrate_metabolism_cluster idu(3);Lysine_fermentation idu(3);Butanol_Biosynthesis idu(3);Acetyl-CoA_fermentation_to_Butyrate idu(3);Valine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.805","peg","scaffold1|size1664507_701294_700524",701294,700524,"-","Methylglutaconyl-CoA hydratase (EC 4.2.1.18)","FIG00138403","idu(1);Benzoate_transport_and_degradation_cluster idu(1);HMG_CoA_Synthesis idu(1);Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.806","peg","scaffold1|size1664507_702553_701291",702553,701291,"-","Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)","FIG00135993","isu;Isoprenoid_Biosynthesis isu;Ketoisovalerate_oxidoreductase icw(1);Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.807","peg","scaffold1|size1664507_703771_702554",703771,702554,"-","3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)","FIG00956174","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.808","peg","scaffold1|size1664507_704027_703779",704027,703779,"-","Acyl carrier protein","FIG00002328","idu(1);Fatty_Acid_Biosynthesis_FASII idu(1);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.809","peg","scaffold1|size1664507_706392_704089",706392,704089,"-","Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39); Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)","FIG01299705","icw(3);Fatty_Acid_Biosynthesis_FASII icw(3);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.810","peg","scaffold1|size1664507_707363_706389",707363,706389,"-","Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)","FIG00000319","icw(3);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.811","peg","scaffold1|size1664507_707417_707545",707417,707545,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.812","peg","scaffold1|size1664507_708732_707866",708732,707866,"-","Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)","FIG00000319","icw(3);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.813","peg","scaffold1|size1664507_709783_709106",709783,709106,"-","beta-lactamase domain protein","FIG01226516","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.814","peg","scaffold1|size1664507_710590_709973",710590,709973,"-","FIG01231475: hypothetical protein","FIG01231474","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.815","peg","scaffold1|size1664507_710711_711268",710711,711268,"+","putative membrane protein","FIG00092051","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.816","peg","scaffold1|size1664507_711393_711878",711393,711878,"+","FIG01234101: hypothetical protein","FIG01234100","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.817","peg","scaffold1|size1664507_714165_712276",714165,712276,"-","DNA mismatch repair protein MutL","FIG00000380","icw(1);DNA_repair,_bacterial_MutL-MutS_system"]
["scaffold1|size1664507","fig|6666666.156949.peg.818","peg","scaffold1|size1664507_716751_714175",716751,714175,"-","DNA mismatch repair protein MutS","FIG00000356","isu;DNA_repair_system_including_RecA,_MutS_and_a_hypothetical_protein isu;DNA_repair,_bacterial_MutL-MutS_system"]
["scaffold1|size1664507","fig|6666666.156949.peg.819","peg","scaffold1|size1664507_717429_716884",717429,716884,"-","Outer spore coat protein E","FIG00006437","isu;Exosporium"]
["scaffold1|size1664507","fig|6666666.156949.peg.820","peg","scaffold1|size1664507_718122_717691",718122,717691,"-","FIG00646845: hypothetical YMCA protein","FIG00646845","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.821","peg","scaffold1|size1664507_719653_718124",719653,718124,"-","tRNA-i(6)A37 methylthiotransferase","FIG00108342","isu;tRNA_modification_Bacteria isu;Methylthiotransferases isu;tRNA_processing"]
["scaffold1|size1664507","fig|6666666.156949.peg.822","peg","scaffold1|size1664507_720979_719801",720979,719801,"-","2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)","FIG00000741","isu;Glycine_Biosynthesis isu;Glycine_and_Serine_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.823","peg","scaffold1|size1664507_722035_720992",722035,720992,"-","L-threonine 3-dehydrogenase (EC 1.1.1.103)","FIG00003022","icw(1);Glycine_Biosynthesis isu;Threonine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.824","peg","scaffold1|size1664507_722560_722300",722560,722300,"-","Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)","FIG00006682","isu;Sporulation_gene_orphans isu;SpoVS_protein_family"]
["scaffold1|size1664507","fig|6666666.156949.peg.825","peg","scaffold1|size1664507_723554_722760",723554,722760,"-","FIG006542: Phosphoesterase","FIG00006542","isu;CBSS-257314.1.peg.676"]
["scaffold1|size1664507","fig|6666666.156949.peg.826","peg","scaffold1|size1664507_725185_723623",725185,723623,"-","FIG002344: Hydrolase (HAD superfamily)","FIG00002344","icw(1);CBSS-257314.1.peg.676 isu;CBSS-469378.4.peg.430"]
["scaffold1|size1664507","fig|6666666.156949.peg.827","peg","scaffold1|size1664507_726636_725461",726636,725461,"-","penicillin-binding protein, putative","FIG00012643","isu;CBSS-83331.1.peg.3039"]
["scaffold1|size1664507","fig|6666666.156949.peg.828","peg","scaffold1|size1664507_727850_726804",727850,726804,"-","RecA protein","FIG00000234","idu(1);DNA_repair_system_including_RecA,_MutS_and_a_hypothetical_protein idu(1);DNA_repair,_bacterial idu(1);DNA_repair,_bacterial_UmuCD_system idu(1);DNA-replication idu(1);DNA_repair,_bacterial_RecFOR_pathway icw(4);CBSS-257314.1.peg.676 icw(1);CBSS-469378.4.peg.430"]
["scaffold1|size1664507","fig|6666666.156949.peg.829","peg","scaffold1|size1664507_729273_728023",729273,728023,"-","Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type S","FIG01304044","isu;NAD_and_NADP_cofactor_biosynthesis_global isu;Riboflavin_synthesis_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.830","peg","scaffold1|size1664507_729872_729291",729872,729291,"-","CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)","FIG00001550","isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria icw(2);CBSS-257314.1.peg.676"]
["scaffold1|size1664507","fig|6666666.156949.peg.831","peg","scaffold1|size1664507_730836_729922",730836,729922,"-","Transcriptional regulator in cluster with unspecified monosaccharide ABC transport system","FIG00002490","icw(5);Unspecified_monosaccharide_transport_cluster icw(4);CBSS-257314.1.peg.676"]
["scaffold1|size1664507","fig|6666666.156949.peg.832","peg","scaffold1|size1664507_731646_730855",731646,730855,"-","ACT domain protein","FIG00003568","icw(4);Unspecified_monosaccharide_transport_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.833","peg","scaffold1|size1664507_732033_731776",732033,731776,"-","FIG007042: hypothetical protein","FIG00007042","icw(2);Unspecified_monosaccharide_transport_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.834","peg","scaffold1|size1664507_732842_732114",732842,732114,"-","3-oxoacyl-[acyl-carrier protein] reductase paralog (EC 1.1.1.100) in cluster with unspecified monosaccharide transporter","FIG01970432","isu;Unspecified_monosaccharide_transport_cluster isu;CBSS-257314.1.peg.676"]
["scaffold1|size1664507","fig|6666666.156949.peg.835","peg","scaffold1|size1664507_734183_732897",734183,732897,"-","FIG009210: peptidase, M16 family","FIG00009210","icw(2);Unspecified_monosaccharide_transport_cluster icw(1);CBSS-257314.1.peg.676"]
["scaffold1|size1664507","fig|6666666.156949.peg.836","peg","scaffold1|size1664507_735460_734180",735460,734180,"-","FIG001621: Zinc protease","FIG00001621","icw(4);Unspecified_monosaccharide_transport_cluster icw(2);CBSS-257314.1.peg.676"]
["scaffold1|size1664507","fig|6666666.156949.peg.837","peg","scaffold1|size1664507_736872_735640",736872,735640,"-","Siderophore transport protein","FIG00029159","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.838","peg","scaffold1|size1664507_737012_736875",737012,736875,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.839","peg","scaffold1|size1664507_737715_736990",737715,736990,"-","Transcriptional regulator in cluster with Zn-dependent hydrolase","FIG00003547","isu;Bacterial_RNA-metabolizing_Zn-dependent_hydrolases icw(1);Unspecified_monosaccharide_transport_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.840","peg","scaffold1|size1664507_740222_737859",740222,737859,"-","Cell division protein FtsK","FIG00000287","icw(2);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);Bacterial_Cell_Division idu(1);Bacterial_Cytoskeleton icw(2);Unspecified_monosaccharide_transport_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.841","peg","scaffold1|size1664507_740565_740353",740565,740353,"-","FIG01225515: hypothetical protein","FIG01225514","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.842","peg","scaffold1|size1664507_741299_740562",741299,740562,"-","Translocation-enhancing protein TepA","FIG01031938","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.843","peg","scaffold1|size1664507_743082_741415",743082,741415,"-","Ribonuclease J2 (endoribonuclease in RNA processing)","FIG00001316","icw(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases isu;Ribonucleases_in_Bacillus"]
["scaffold1|size1664507","fig|6666666.156949.peg.844","peg","scaffold1|size1664507_744132_743260",744132,743260,"-","4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)","FIG00019600","icw(1);Lysine_Biosynthesis_DAP_Pathway icw(1);Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch"]
["scaffold1|size1664507","fig|6666666.156949.peg.845","peg","scaffold1|size1664507_745377_744163",745377,744163,"-","Aspartokinase (EC 2.7.2.4)","FIG00000132","icw(2);Lysine_Biosynthesis_DAP_Pathway icw(2);Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch icw(1);Threonine_and_Homoserine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.846","peg","scaffold1|size1664507_746509_745469",746509,745469,"-","Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)","FIG00026137","isu;Lysine_Biosynthesis_DAP_Pathway isu;Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch isu;Threonine_and_Homoserine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.847","peg","scaffold1|size1664507_747237_746635",747237,746635,"-","Dipicolinate synthase subunit B","FIG00007304","icw(1);Dipicolinate_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.848","peg","scaffold1|size1664507_748133_747240",748133,747240,"-","Dipicolinate synthase subunit A (EC 4.2.1.52)","FIG00004651","isu;Dipicolinate_Synthesis isu;CBSS-350688.3.peg.1509"]
["scaffold1|size1664507","fig|6666666.156949.peg.849","peg","scaffold1|size1664507_748254_748135",748254,748135,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.850","peg","scaffold1|size1664507_748576_748319",748576,748319,"-","FIG007697: hypothetical protein","FIG00007697","icw(1);CBSS-350688.3.peg.1509"]
["scaffold1|size1664507","fig|6666666.156949.peg.851","peg","scaffold1|size1664507_749883_748654",749883,748654,"-","FIG007959: peptidase, M16 family","FIG00007959","icw(3);CBSS-350688.3.peg.1509 isu;CBSS-1806.1.peg.3045"]
["scaffold1|size1664507","fig|6666666.156949.peg.852","peg","scaffold1|size1664507_750882_749923",750882,749923,"-","FIG007013: polysaccharide deacetylase, putative","FIG00007013","icw(6);CBSS-350688.3.peg.1509"]
["scaffold1|size1664507","fig|6666666.156949.peg.853","peg","scaffold1|size1664507_753116_750999",753116,750999,"-","Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)","FIG00000391","isu;Bacterial_RNA-metabolizing_Zn-dependent_hydrolases icw(4);CBSS-350688.3.peg.1509 icw(1);CBSS-1806.1.peg.3045 isu;Polyadenylation_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.854","peg","scaffold1|size1664507_754665_753715",754665,753715,"-","Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)","FIG00000220","isu;Riboflavin,_FMN_and_FAD_metabolism isu;Riboflavin,_FMN_and_FAD_metabolism isu;CBSS-350688.3.peg.1509 icw(5);CBSS-350688.3.peg.1509 isu;riboflavin_to_FAD isu;riboflavin_to_FAD"]
["scaffold1|size1664507","fig|6666666.156949.peg.855","peg","scaffold1|size1664507_755613_754684",755613,754684,"-","tRNA pseudouridine synthase B (EC 4.2.1.70)","FIG01016270","isu;tRNA_modification_Bacteria icw(7);CBSS-350688.3.peg.1509 icw(2);CBSS-138119.3.peg.2719 isu;tRNA_processing isu;RNA_pseudouridine_syntheses"]
["scaffold1|size1664507","fig|6666666.156949.peg.856","peg","scaffold1|size1664507_756042_755695",756042,755695,"-","Ribosome-binding factor A","FIG00000164","icw(1);Translation_initiation_factors_bacterial icw(6);CBSS-350688.3.peg.1509 icw(1);CBSS-138119.3.peg.2719 icw(4);NusA-TFII_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.857","peg","scaffold1|size1664507_756343_756065",756343,756065,"-","YlxP-like protein","FIG00001863","icw(9);CBSS-350688.3.peg.1509 icw(6);NusA-TFII_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.858","peg","scaffold1|size1664507_758490_756340",758490,756340,"-","Translation initiation factor 2","FIG00000102","isu;Translation_initiation_factors_bacterial icw(1);CBSS-350688.3.peg.1509 isu;CBSS-138119.3.peg.2719 isu;Universal_GTPases isu;NusA-TFII_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.859","peg","scaffold1|size1664507_758740_758510",758740,758510,"-","ribosomal protein L7Ae family protein","FIG00001489","icw(7);CBSS-350688.3.peg.1509 icw(5);NusA-TFII_Cluster isu;Transcription_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.860","peg","scaffold1|size1664507_759038_758814",759038,758814,"-","COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination","FIG00001133","icw(3);CBSS-350688.3.peg.1509 icw(2);NusA-TFII_Cluster icw(1);Transcription_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.861","peg","scaffold1|size1664507_760218_759103",760218,759103,"-","Transcription termination protein NusA","FIG00000168","icw(4);CBSS-350688.3.peg.1509 icw(3);NusA-TFII_Cluster icw(3);Transcription_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.862","peg","scaffold1|size1664507_760723_760253",760723,760253,"-","FIG000325: clustered with transcription termination protein NusA","FIG00000325","icw(3);CBSS-350688.3.peg.1509 icw(1);NusA-TFII_Cluster icw(2);Transcription_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.863","peg","scaffold1|size1664507_765366_761053",765366,761053,"-","DNA polymerase III alpha subunit (EC 2.7.7.7)","FIG00008411","idu(1);CBSS-269801.1.peg.809 idu(1);CBSS-350688.3.peg.1509 idu(1);DNA-replication"]
["scaffold1|size1664507","fig|6666666.156949.peg.864","peg","scaffold1|size1664507_767169_765475",767169,765475,"-","Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type","FIG00000069","isu;tRNA_aminoacylation,_Pro"]
["scaffold1|size1664507","fig|6666666.156949.peg.865","peg","scaffold1|size1664507_768464_767202",768464,767202,"-","Membrane-associated zinc metalloprotease","FIG00002803","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.866","peg","scaffold1|size1664507_769628_768477",769628,768477,"-","1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)","FIG00000401","isu;CBSS-83331.1.peg.3039 isu;Isoprenoid_Biosynthesis isu;Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.867","peg","scaffold1|size1664507_770490_769690",770490,769690,"-","Phosphatidate cytidylyltransferase (EC 2.7.7.41)","FIG00000097","isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.868","peg","scaffold1|size1664507_771285_770503",771285,770503,"-","Undecaprenyl diphosphate synthase (EC 2.5.1.31)","NA","isu;Polyprenyl_Diphosphate_Biosynthesis isu;Isoprenoinds_for_Quinones icw(1);CBSS-83331.1.peg.3039 icw(1);Isoprenoid_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.869","peg","scaffold1|size1664507_771973_771416",771973,771416,"-","Ribosome recycling factor","FIG00000202","icw(1);Ribosome_recycling_related_cluster isu;Translation_termination_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.870","peg","scaffold1|size1664507_772697_771975",772697,771975,"-","Uridine monophosphate kinase (EC 2.7.4.22)","FIG00001819","icw(2);CBSS-312309.3.peg.1965 icw(3);Ribosome_recycling_related_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.871","peg","scaffold1|size1664507_773724_772843",773724,772843,"-","Translation elongation factor Ts","FIG00000191","icw(1);CBSS-312309.3.peg.1965 isu;Translation_elongation_factors_bacterial icw(2);Ribosome_recycling_related_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.872","peg","scaffold1|size1664507_774566_773826",774566,773826,"-","SSU ribosomal protein S2p (SAe)","FIG00037273","isu;CBSS-312309.3.peg.1965 isu;Ribosome_recycling_related_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.873","peg","scaffold1|size1664507_775222_774710",775222,774710,"-","FIG01231449: hypothetical protein","FIG01231445","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.874","peg","scaffold1|size1664507_776006_775242",776006,775242,"-","RNA polymerase sigma factor for flagellar operon","FIG00009068","icw(1);Flagellar_motility isu;Flagellum isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.875","peg","scaffold1|size1664507_776529_776029",776529,776029,"-","Chemotaxis protein CheD","FIG00005647","icw(4);Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.876","peg","scaffold1|size1664507_777155_776526",777155,776526,"-","Chemotaxis protein CheC -- inhibitor of MCP methylation","FIG00002947","isu;Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.877","peg","scaffold1|size1664507_777644_777174",777644,777174,"-","Positive regulator of CheA protein activity (CheW)","FIG00000652","isu;Two-component_regulatory_systems_in_Campylobacter icw(1);Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.878","peg","scaffold1|size1664507_779684_777666",779684,777666,"-","Signal transduction histidine kinase CheA (EC 2.7.3.-)","FIG00000571","icw(1);Flagellar_motility icw(1);Two-component_regulatory_systems_in_Campylobacter icw(2);Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.879","peg","scaffold1|size1664507_780763_779690",780763,779690,"-","Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61)","FIG00017306","icw(3);Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.880","peg","scaffold1|size1664507_781655_780765",781655,780765,"-","Flagellar synthesis regulator FleN","FIG00001155","isu;Flagellar_motility isu;Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.881","peg","scaffold1|size1664507_782752_781652",782752,781652,"-","Flagellar biosynthesis protein FlhF","FIG00000950","icw(5);Flagellar_motility icw(5);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.882","peg","scaffold1|size1664507_784785_782752",784785,782752,"-","Flagellar biosynthesis protein FlhA","FIG00029709","icw(2);Flagellar_motility icw(5);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.883","peg","scaffold1|size1664507_785900_784818",785900,784818,"-","Flagellar biosynthesis protein FlhB","FIG00003476","icw(5);Flagellar_motility icw(3);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.884","peg","scaffold1|size1664507_786679_785900",786679,785900,"-","Flagellar biosynthesis protein FliR","FIG00000586","icw(1);Flagellar_motility icw(1);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.885","peg","scaffold1|size1664507_786932_786687",786932,786687,"-","Flagellar biosynthesis protein FliQ","FIG00108124","icw(7);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.886","peg","scaffold1|size1664507_787456_786971",787456,786971,"-","Flagellar biosynthesis protein FliP","FIG00138353","icw(2);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.887","peg","scaffold1|size1664507_788288_787629",788288,787629,"-","Flagellar biosynthesis protein FliZ","FIG00002745","icw(5);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.888","peg","scaffold1|size1664507_788665_788303",788665,788303,"-","Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY","FIG00000426","icw(6);Flagellar_motility idu(1);Two-component_regulatory_systems_in_Campylobacter icw(2);Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.889","peg","scaffold1|size1664507_789827_788691",789827,788691,"-","Flagellar motor switch protein FliN","FIG00002041","isu;Flagellar_motility icw(6);Flagellum icw(1);Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.890","peg","scaffold1|size1664507_790815_789817",790815,789817,"-","Flagellar motor switch protein FliM","FIG01290464","icw(3);Flagellar_motility icw(12);Flagellum isu;Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.891","peg","scaffold1|size1664507_791271_790849",791271,790849,"-","Flagellar biosynthesis protein FliL","FIG00057432","isu;Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.892","peg","scaffold1|size1664507_791483_791268",791483,791268,"-","Flagellar protein FlbD","FIG00125327","icw(12);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.893","peg","scaffold1|size1664507_792317_791523",792317,791523,"-","Flagellar basal-body rod protein FlgG","FIG00119690","icw(6);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.894","peg","scaffold1|size1664507_792761_792339",792761,792339,"-","Flagellar basal-body rod modification protein FlgD","FIG00000646","icw(2);Flagellar_motility icw(2);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.895","peg","scaffold1|size1664507_794221_792758",794221,792758,"-","Flagellar hook-length control protein FliK","FIG00001074","icw(8);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.896","peg","scaffold1|size1664507_794848_794234",794848,794234,"-","Flagellar protein FlbB","FIG00077673","icw(4);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.897","peg","scaffold1|size1664507_795303_794860",795303,794860,"-","Flagellar protein FliJ","FIG00001147","icw(6);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.898","peg","scaffold1|size1664507_796622_795306",796622,795306,"-","Flagellum-specific ATP synthase FliI","FIG01955945","isu;Flagellar_motility icw(9);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.899","peg","scaffold1|size1664507_797371_796619",797371,796619,"-","Flagellar assembly protein FliH","FIG00000850","isu;Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.900","peg","scaffold1|size1664507_798380_797364",798380,797364,"-","Flagellar motor switch protein FliG","FIG00000610","icw(9);Flagellum isu;Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.901","peg","scaffold1|size1664507_800003_798393",800003,798393,"-","Flagellar M-ring protein FliF","FIG00017343","icw(1);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.902","peg","scaffold1|size1664507_800369_800049",800369,800049,"-","Flagellar hook-basal body complex protein FliE","FIG00078127","icw(3);Flagellum icw(1);Flagellum_in_Campylobacter"]
["scaffold1|size1664507","fig|6666666.156949.peg.903","peg","scaffold1|size1664507_800832_800380",800832,800380,"-","Flagellar basal-body rod protein FlgC","FIG00000587","icw(2);Flagellum isu;Flagellum_in_Campylobacter"]
["scaffold1|size1664507","fig|6666666.156949.peg.904","peg","scaffold1|size1664507_801221_800832",801221,800832,"-","Flagellar basal-body rod protein FlgB","FIG00133479","icw(4);Flagellum icw(2);Flagellum_in_Campylobacter"]
["scaffold1|size1664507","fig|6666666.156949.peg.905","peg","scaffold1|size1664507_802380_801601",802380,801601,"-","GTP-sensing transcriptional pleiotropic repressor codY","FIG00001663","icw(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold1|size1664507","fig|6666666.156949.peg.906","peg","scaffold1|size1664507_803823_802420",803823,802420,"-","ATP-dependent hsl protease ATP-binding subunit HslU","FIG00000505","icw(1);Proteolysis_in_bacteria,_ATP-dependent icw(1);Proteasome_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.907","peg","scaffold1|size1664507_804385_803840",804385,803840,"-","ATP-dependent protease HslV (EC 3.4.25.-)","FIG00000487","isu;Proteolysis_in_bacteria,_ATP-dependent icw(2);Proteasome_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.908","peg","scaffold1|size1664507_805312_804398",805312,804398,"-","Site-specific tyrosine recombinase","FIG00012692","isu;Proteasome_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.909","peg","scaffold1|size1664507_806687_805380",806687,805380,"-","tRNA:m(5)U-54 MTase gid","FIG00138239","isu;tRNA_modification_Bacteria isu;Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold1|size1664507","fig|6666666.156949.peg.910","peg","scaffold1|size1664507_808838_806763",808838,806763,"-","DNA topoisomerase I (EC 5.99.1.2)","FIG00000204","icw(1);CBSS-272943.3.peg.1367 isu;DNA_topoisomerases,_Type_I,_ATP-independent icw(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase isu;pVir_Plasmid_of_Campylobacter"]
["scaffold1|size1664507","fig|6666666.156949.peg.911","peg","scaffold1|size1664507_809919_809026",809919,809026,"-","Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake","FIG00035268","isu;CBSS-272943.3.peg.1367 icw(2);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold1|size1664507","fig|6666666.156949.peg.912","peg","scaffold1|size1664507_810882_809980",810882,809980,"-","Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)","FIG00038611","isu;TCA_Cycle isu;Serine-glyoxylate_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.913","peg","scaffold1|size1664507_812068_810911",812068,810911,"-","Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)","FIG00000337","icw(1);TCA_Cycle icw(1);Serine-glyoxylate_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.914","peg","scaffold1|size1664507_812522_812241",812522,812241,"-","Flagellar biosynthesis protein FlhB","FIG00003476","idu(1);Flagellar_motility idu(1);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.915","peg","scaffold1|size1664507_814249_812519",814249,812519,"-","FIG01230345: hypothetical protein","FIG01230342","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.916","peg","scaffold1|size1664507_815047_814280",815047,814280,"-","Ribonuclease HII (EC 3.1.26.4)","FIG00000126","isu;Ribonuclease_H isu;Ribonucleases_in_Bacillus isu;DNA_replication,_archaeal icw(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold1|size1664507","fig|6666666.156949.peg.917","peg","scaffold1|size1664507_815966_815118",815966,815118,"-","50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)","FIG00000840","icw(1);Universal_GTPases isu;Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold1|size1664507","fig|6666666.156949.peg.918","peg","scaffold1|size1664507_816456_816109",816456,816109,"-","LSU ribosomal protein L19p","FIG00000214","isu;Ribosome_LSU_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.919","peg","scaffold1|size1664507_817327_816596",817327,816596,"-","tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)","FIG00000230","isu;tRNA_modification_Bacteria isu;RNA_methylation icw(1);Ribosome_biogenesis_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.920","peg","scaffold1|size1664507_817848_817324",817848,817324,"-","16S rRNA processing protein RimM","FIG00000312","isu;Ribosome_biogenesis_bacterial isu;KH_domain_RNA_binding_protein_YlqC"]
["scaffold1|size1664507","fig|6666666.156949.peg.921","peg","scaffold1|size1664507_818239_817853",818239,817853,"-","FIG01228237: hypothetical protein","FIG00774276","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.922","peg","scaffold1|size1664507_818606_818361",818606,818361,"-","KH domain RNA binding protein YlqC","FIG00005628","icw(1);KH_domain_RNA_binding_protein_YlqC"]
["scaffold1|size1664507","fig|6666666.156949.peg.923","peg","scaffold1|size1664507_818878_818606",818878,818606,"-","SSU ribosomal protein S16p","FIG00000193","icw(2);KH_domain_RNA_binding_protein_YlqC"]
["scaffold1|size1664507","fig|6666666.156949.peg.924","peg","scaffold1|size1664507_820324_818984",820324,818984,"-","Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)","FIG00000113","isu;Bacterial_signal_recognition_particle_(SRP) isu;Universal_GTPases"]
["scaffold1|size1664507","fig|6666666.156949.peg.925","peg","scaffold1|size1664507_820670_820338",820670,820338,"-","Signal recognition particle associated protein","FIG00001470","icw(1);Bacterial_signal_recognition_particle_(SRP)"]
["scaffold1|size1664507","fig|6666666.156949.peg.926","peg","scaffold1|size1664507_820847_821332",820847,821332,"+","FIG01236791: hypothetical protein","FIG01236785","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.927","peg","scaffold1|size1664507_822357_821368",822357,821368,"-","Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)","FIG00000095","icw(2);Bacterial_signal_recognition_particle_(SRP) isu;Bacterial_Cell_Division icw(1);Universal_GTPases"]
["scaffold1|size1664507","fig|6666666.156949.peg.928","peg","scaffold1|size1664507_825937_822377",825937,822377,"-","Chromosome partition protein smc","FIG00026918","isu;DNA_structural_proteins,_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.929","peg","scaffold1|size1664507_826787_826038",826787,826038,"-","Ribonuclease III (EC 3.1.26.3)","FIG00000208","isu;RNA_processing_and_degradation,_bacterial isu;CBSS-176299.4.peg.1292"]
["scaffold1|size1664507","fig|6666666.156949.peg.930","peg","scaffold1|size1664507_827160_826927",827160,826927,"-","Acyl carrier protein","FIG00002328","icw(1);Fatty_Acid_Biosynthesis_FASII idu(1);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.931","peg","scaffold1|size1664507_827984_827244",827984,827244,"-","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)","FIG00621114","idu(6);CBSS-246196.1.peg.364 idu(6);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.932","peg","scaffold1|size1664507_828930_827977",828930,827977,"-","Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)","FIG00000319","icw(2);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.933","peg","scaffold1|size1664507_829950_828949",829950,828949,"-","Phosphate:acyl-ACP acyltransferase PlsX","FIG00000446","icw(2);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.934","peg","scaffold1|size1664507_830530_829964",830530,829964,"-","Phosphate:acyl-ACP acyltransferase PlsX","FIG00000446","icw(3);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.935","peg","scaffold1|size1664507_832687_830639",832687,830639,"-","ATP-dependent DNA helicase RecG (EC 3.6.1.-)","FIG01959944","isu;DNA-replication isu;A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.936","peg","scaffold1|size1664507_833567_832665",833567,832665,"-","L-serine dehydratase, alpha subunit (EC 4.3.1.17)","FIG00001440","isu;Glycine_and_Serine_Utilization isu;Pyruvate_Alanine_Serine_Interconversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.937","peg","scaffold1|size1664507_834255_833593",834255,833593,"-","L-serine dehydratase, beta subunit (EC 4.3.1.17)","FIG00010818","icw(1);Glycine_and_Serine_Utilization icw(1);Pyruvate_Alanine_Serine_Interconversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.938","peg","scaffold1|size1664507_836055_834394",836055,834394,"-","Dihydroxyacetone kinase family protein","FIG00042616","icw(5);A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.939","peg","scaffold1|size1664507_836433_836071",836433,836071,"-","FIG001802: Putative alkaline-shock protein","FIG00001802","icw(4);A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.940","peg","scaffold1|size1664507_836710_836898",836710,836898,"+","LSU ribosomal protein L28p","NA","isu;Ribosome_LSU_bacterial isu;A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.941","peg","scaffold1|size1664507_837767_837123",837767,837123,"-","Thiamin pyrophosphokinase (EC 2.7.6.2)","FIG00001175","isu;Thiamin_biosynthesis icw(1);A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.942","peg","scaffold1|size1664507_838493_837840",838493,837840,"-","Ribulose-phosphate 3-epimerase (EC 5.1.3.1)","FIG00000047","isu;Pentose_phosphate_pathway isu;Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase isu;Riboflavin_synthesis_cluster isu;Calvin-Benson_cycle icw(2);A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.943","peg","scaffold1|size1664507_839394_838498",839394,838498,"-","Ribosome small subunit-stimulated GTPase EngC","FIG00000464","isu;Universal_GTPases icw(5);A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.944","peg","scaffold1|size1664507_841355_839409",841355,839409,"-","Serine/threonine protein kinase PrkC, regulator of stationary phase","FIG00030191","icw(3);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase icw(5);A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.945","peg","scaffold1|size1664507_842113_841349",842113,841349,"-","Protein serine/threonine phosphatase PrpC, regulation of stationary phase","FIG00134722","icw(2);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold1|size1664507","fig|6666666.156949.peg.946","peg","scaffold1|size1664507_843211_842120",843211,842120,"-","Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)","FIG00000293","isu;RNA_methylation icw(5);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold1|size1664507","fig|6666666.156949.peg.947","peg","scaffold1|size1664507_844558_843215",844558,843215,"-","Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)","FIG00138175","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.948","peg","scaffold1|size1664507_845498_844545",845498,844545,"-","Methionyl-tRNA formyltransferase (EC 2.1.2.9)","FIG00000112","isu;Translation_initiation_factors_bacterial icw(2);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase icw(1);CBSS-89187.3.peg.2957"]
["scaffold1|size1664507","fig|6666666.156949.peg.949","peg","scaffold1|size1664507_845985_845503",845985,845503,"-","Peptide deformylase (EC 3.5.1.88)","FIG00000017","idu(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase idu(1);CBSS-89187.3.peg.2957 idu(1);Translation_termination_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.950","peg","scaffold1|size1664507_848429_846012",848429,846012,"-","Helicase PriA essential for oriC/DnaA-independent DNA replication","FIG00080955","icw(3);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase isu;DNA-replication"]
["scaffold1|size1664507","fig|6666666.156949.peg.951","peg","scaffold1|size1664507_849616_848426",849616,848426,"-","Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)","FIG00000330","isu;Coenzyme_A_Biosynthesis isu;Coenzyme_A_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.952","peg","scaffold1|size1664507_849930_849727",849930,849727,"-","DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)","FIG00000394","isu;CBSS-176299.4.peg.1292 isu;RNA_polymerase_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.953","peg","scaffold1|size1664507_850548_849934",850548,849934,"-","Guanylate kinase (EC 2.7.4.8)","FIG00000131","isu;Purine_conversions icw(1);CBSS-323097.3.peg.2594"]
["scaffold1|size1664507","fig|6666666.156949.peg.954","peg","scaffold1|size1664507_850825_850556",850825,850556,"-","FIG003307: hypothetical protein","FIG00003307","icw(2);CBSS-323097.3.peg.2594"]
["scaffold1|size1664507","fig|6666666.156949.peg.955","peg","scaffold1|size1664507_851765_850902",851765,850902,"-","Protein YicC","FIG00032749","isu;CBSS-323097.3.peg.2594"]
["scaffold1|size1664507","fig|6666666.156949.peg.956","peg","scaffold1|size1664507_854532_851860",854532,851860,"-","Ca ion P-type ATPase","FIG01335789","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.957","peg","scaffold1|size1664507_854654_856366",854654,856366,"+","Fibronectin/fibrinogen-binding protein","FIG00138381","isu;Adhesion_of_Campylobacter"]
["scaffold1|size1664507","fig|6666666.156949.peg.958","peg","scaffold1|size1664507_856894_856406",856894,856406,"-","Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76)","FIG00002381","isu;Heme_and_Siroheme_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.959","peg","scaffold1|size1664507_857660_856875",857660,856875,"-","Sirohydrochlorin ferrochelatase (EC 4.99.1.4)","FIG00132864","icw(2);Heme_and_Siroheme_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.960","peg","scaffold1|size1664507_858436_857663",858436,857663,"-","Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)","FIG00109555","icw(1);Heme_and_Siroheme_Biosynthesis idu(1);Coenzyme_B12_biosynthesis idu(1);Dissimilatory_nitrite_reductase"]
["scaffold1|size1664507","fig|6666666.156949.peg.961","peg","scaffold1|size1664507_859128_858535",859128,858535,"-","Adenylylsulfate kinase (EC 2.7.1.25)","FIG00000821","idu(1);O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter idu(1);Cysteine_Biosynthesis idu(1);Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.962","peg","scaffold1|size1664507_860289_859141",860289,859141,"-","Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)","FIG01962692","icw(2);Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.963","peg","scaffold1|size1664507_861402_860338",861402,860338,"-","Sulfate permease, Pit-type","FIG00089384","icw(3);Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.964","peg","scaffold1|size1664507_862115_861414",862115,861414,"-","Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10)","FIG01303877","icw(1);Cysteine_Biosynthesis icw(1);Inorganic_Sulfur_Assimilation icw(2);Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.965","peg","scaffold1|size1664507_863162_862530",863162,862530,"-","Orotate phosphoribosyltransferase (EC 2.4.2.10)","FIG00025759","icw(3);De_Novo_Pyrimidine_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.966","peg","scaffold1|size1664507_863878_863159",863878,863159,"-","Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)","FIG00000173","isu;De_Novo_Pyrimidine_Synthesis isu;Riboflavin_synthesis_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.967","peg","scaffold1|size1664507_864782_863847",864782,863847,"-","Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)","FIG00001054","icw(2);De_Novo_Pyrimidine_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.968","peg","scaffold1|size1664507_865552_864782",865552,864782,"-","Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)","FIG00133515","icw(1);De_Novo_Pyrimidine_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.969","peg","scaffold1|size1664507_868764_865549",868764,865549,"-","Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)","FIG00000111","icw(1);Macromolecular_synthesis_operon icw(6);De_Novo_Pyrimidine_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.970","peg","scaffold1|size1664507_869843_868749",869843,868749,"-","Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)","FIG00000130","idu(1);Macromolecular_synthesis_operon icw(4);De_Novo_Pyrimidine_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.971","peg","scaffold1|size1664507_871126_869840",871126,869840,"-","Dihydroorotase (EC 3.5.2.3)","FIG00000032","icw(5);De_Novo_Pyrimidine_Synthesis isu;Zinc_regulated_enzymes"]
["scaffold1|size1664507","fig|6666666.156949.peg.972","peg","scaffold1|size1664507_872024_871110",872024,871110,"-","Aspartate carbamoyltransferase (EC 2.1.3.2)","FIG00000122","icw(1);De_Novo_Pyrimidine_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.973","peg","scaffold1|size1664507_873562_872168",873562,872168,"-","Uracil permease","FIG00003251","isu;De_Novo_Pyrimidine_Synthesis isu;Pyrimidine_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.974","peg","scaffold1|size1664507_874191_873646",874191,873646,"-","Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR","FIG00000677","icw(3);De_Novo_Pyrimidine_Synthesis icw(4);De_Novo_Pyrimidine_Synthesis idu(1);pyrimidine_conversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.975","peg","scaffold1|size1664507_875285_874374",875285,874374,"-","Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)","FIG00000124","isu;Ribosome_biogenesis_bacterial isu;RNA_pseudouridine_syntheses"]
["scaffold1|size1664507","fig|6666666.156949.peg.976","peg","scaffold1|size1664507_875751_875287",875751,875287,"-","Lipoprotein signal peptidase (EC 3.4.23.36)","FIG00000081","isu;Signal_peptidase isu;CBSS-36873.1.peg.4752 isu;Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes isu;Lipoprotein_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.977","peg","scaffold1|size1664507_876228_875854",876228,875854,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.978","peg","scaffold1|size1664507_879137_876372",879137,876372,"-","Isoleucyl-tRNA synthetase (EC 6.1.1.5)","FIG00000085","isu;tRNA_aminoacylation,_Ile icw(5);Cell_Division_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.979","peg","scaffold1|size1664507_879973_879479",879973,879479,"-","Cell division initiation protein DivIVA","FIG00001414","isu;Bacterial_Cell_Division isu;Bacterial_Cytoskeleton icw(3);Cell_Division_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.980","peg","scaffold1|size1664507_880840_880067",880840,880067,"-","FIG001583: hypothetical protein, contains S4-like RNA binding domain","FIG00001583","icw(2);Cell_Division_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.981","peg","scaffold1|size1664507_881173_880901",881173,880901,"-","Cell division protein YlmG/Ycf19 (putative), YggT family","FIG00013736","icw(1);Cell_Division_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.982","peg","scaffold1|size1664507_881635_881180",881635,881180,"-","FIG001960: FtsZ-interacting protein related to cell division","FIG00001960","icw(4);Cell_Division_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.983","peg","scaffold1|size1664507_882324_881632",882324,881632,"-","Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC","FIG00003955","isu;Cell_Division_Cluster isu;A_Hypothetical_Protein_Related_to_Proline_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.984","peg","scaffold1|size1664507_883122_882331",883122,882331,"-","COG1496: Uncharacterized conserved protein","FIG00003370","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.985","peg","scaffold1|size1664507_883572_883327",883572,883327,"-","FIG011856: hypothetical protein","FIG00011856","isu;CBSS-279010.5.peg.1697"]
["scaffold1|size1664507","fig|6666666.156949.peg.986","peg","scaffold1|size1664507_885007_883655",885007,883655,"-","Amidohydrolase YlmB, involved in salvage of thiamin pyrimidine moiety","FIG00071200","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.987","peg","scaffold1|size1664507_885931_885137",885931,885137,"-","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.988","peg","scaffold1|size1664507_886861_886079",886861,886079,"-","RNA polymerase sporulation specific sigma factor SigG","FIG00003881","icw(2);CBSS-279010.5.peg.1697 icw(2);Sporulation_gene_orphans icw(1);Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.989","peg","scaffold1|size1664507_887720_887001",887720,887001,"-","RNA polymerase sporulation specific sigma factor SigE","FIG00004014","icw(1);CBSS-279010.5.peg.1697 isu;Sporulation_gene_orphans isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.990","peg","scaffold1|size1664507_888739_887783",888739,887783,"-","Sporulation sigma-E factor processing peptidase (SpoIIGA)","FIG00007389","icw(1);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.991","peg","scaffold1|size1664507_888937_888824",888937,888824,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.992","peg","scaffold1|size1664507_893207_888906",893207,888906,"-","Copper binding protein, plastocyanin/azurin family","FIG00440484","isu;Copper_transport_and_blue_copper_proteins isu;Bacterial_hemoglobins"]
["scaffold1|size1664507","fig|6666666.156949.peg.993","peg","scaffold1|size1664507_894658_893510",894658,893510,"-","Cell division protein FtsZ (EC 3.4.24.-)","FIG00000145","isu;Bacterial_Cell_Division icw(2);cell_division_cluster_containing_FtsQ isu;Bacterial_Cytoskeleton icw(2);cell_division_core_of_larger_cluster isu;Cell_Division_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.994","peg","scaffold1|size1664507_896016_894694",896016,894694,"-","Cell division protein FtsA","FIG00000385","icw(1);Bacterial_Cell_Division isu;cell_division_cluster_containing_FtsQ icw(1);Bacterial_Cytoskeleton isu;cell_division_core_of_larger_cluster icw(1);Cell_Division_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.995","peg","scaffold1|size1664507_896555_896190",896555,896190,"-","FIG025307: hypothetical protein","FIG00025307","isu;CBSS-227882.1.peg.6980"]
["scaffold1|size1664507","fig|6666666.156949.peg.996","peg","scaffold1|size1664507_897280_896573",897280,896573,"-","YLXX protein","FIG00106768","icw(2);CBSS-227882.1.peg.6980"]
["scaffold1|size1664507","fig|6666666.156949.peg.997","peg","scaffold1|size1664507_897998_897303",897998,897303,"-","Division initiation protein","FIG00008602","icw(3);CBSS-227882.1.peg.6980"]
["scaffold1|size1664507","fig|6666666.156949.peg.998","peg","scaffold1|size1664507_898786_897995",898786,897995,"-","Cell division protein FtsQ","FIG00021517","icw(3);Bacterial_Cell_Division icw(1);cell_division_cluster_containing_FtsQ icw(3);Bacterial_Cytoskeleton icw(2);cell_division_core_of_larger_cluster icw(1);CBSS-227882.1.peg.6980 icw(3);Cell_Division_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.999","peg","scaffold1|size1664507_899827_898916",899827,898916,"-","UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)","FIG00000163","isu;UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis isu;Peptidoglycan_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1000","peg","scaffold1|size1664507_900950_899859",900950,899859,"-","UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)","FIG00047056","isu;cell_division_core_of_larger_cluster icw(2);Peptidoglycan_Biosynthesis isu;Cell_Division_Cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1001","peg","scaffold1|size1664507_902183_901071",902183,901071,"-","Cell division protein FtsW / Stage V sporulation protein E","FIG01303745","idu(2);Bacterial_Cell_Division icw(1);cell_division_cluster_containing_FtsQ idu(2);Bacterial_Cytoskeleton isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.1002","peg","scaffold1|size1664507_903587_902232",903587,902232,"-","UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)","FIG00085033","icw(3);Peptidoglycan_Biosynthesis isu;Peptidoglycan_biosynthesis--gjo"]
["scaffold1|size1664507","fig|6666666.156949.peg.1003","peg","scaffold1|size1664507_904562_903588",904562,903588,"-","Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)","FIG00000221","icw(5);Peptidoglycan_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1004","peg","scaffold1|size1664507_906158_904674",906158,904674,"-","UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)","FIG00000243","isu;Peptidoglycan_Biosynthesis icw(1);Peptidoglycan_biosynthesis--gjo isu;Methicillin_resistance_in_Staphylococci"]
["scaffold1|size1664507","fig|6666666.156949.peg.1005","peg","scaffold1|size1664507_908274_906334",908274,906334,"-","Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) / Stage V sporulation protein D (Sporulation-specific penicillin-binding protein)","FIG00229585","idu(3);Bacterial_Cell_Division isu;CBSS-83331.1.peg.3039 isu;CBSS-83331.1.peg.3039 idu(3);Flagellum_in_Campylobacter idu(3);Bacterial_Cytoskeleton icw(1);Peptidoglycan_Biosynthesis isu;Sporulation_gene_orphans isu;16S_rRNA_modification_within_P_site_of_ribosome isu;16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold1|size1664507","fig|6666666.156949.peg.1006","peg","scaffold1|size1664507_910532_908391",910532,908391,"-","Penicillin-binding protein 2B","FIG00340321","icw(1);CBSS-83331.1.peg.3039 icw(3);16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold1|size1664507","fig|6666666.156949.peg.1007","peg","scaffold1|size1664507_910891_910538",910891,910538,"-","Cell division protein FtsL","FIG00001060","icw(1);Bacterial_Cell_Division icw(1);Bacterial_Cytoskeleton isu;Stationary_phase_repair_cluster icw(3);16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold1|size1664507","fig|6666666.156949.peg.1008","peg","scaffold1|size1664507_911866_910931",911866,910931,"-","rRNA small subunit methyltransferase H","FIG00000172","icw(2);Bacterial_Cell_Division icw(6);16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold1|size1664507","fig|6666666.156949.peg.1009","peg","scaffold1|size1664507_912382_911936",912382,911936,"-","Cell division protein MraZ","FIG00000547","icw(3);Bacterial_Cell_Division icw(2);Bacterial_Cytoskeleton icw(5);16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold1|size1664507","fig|6666666.156949.peg.1010","peg","scaffold1|size1664507_914112_912493",914112,912493,"-","BH2577 unknown conserved protein in B. subtilis","FIG00011279","icw(1);16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold1|size1664507","fig|6666666.156949.peg.1011","peg","scaffold1|size1664507_915079_914183",915079,914183,"-","2-dehydropantoate 2-reductase (EC 1.1.1.169)","FIG00034973","idu(1);Coenzyme_A_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1012","peg","scaffold1|size1664507_915239_915721",915239,915721,"+","Uncharacterized N-acetyltransferase BT9727_3663 (EC 2.3.1.-)","FIG00003728","isu;16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold1|size1664507","fig|6666666.156949.peg.1013","peg","scaffold1|size1664507_916359_915778",916359,915778,"-","Prespore specific transcriptional activator RsfA","FIG01307797","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1014","peg","scaffold1|size1664507_916427_916543",916427,916543,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1015","peg","scaffold1|size1664507_917224_916706",917224,916706,"-","COG1399 protein in cluster with ribosomal protein L32p, Firmicutes subfamily","FIG00008125","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1016","peg","scaffold1|size1664507_917252_917437",917252,917437,"+","FIG01234921: hypothetical protein","FIG01234919","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1017","peg","scaffold1|size1664507_917434_918681",917434,918681,"+","FIG007079: UPF0348 protein family","FIG00007079","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1018","peg","scaffold1|size1664507_919723_918698",919723,918698,"-","Lon-like protease with PDZ domain","FIG00051666","isu;Proteasome_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.1019","peg","scaffold1|size1664507_920507_919725",920507,919725,"-","Serine protease (EC 3.4.21.-)","FIG01304452","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1020","peg","scaffold1|size1664507_920688_921914",920688,921914,"+","FIGfam003972: membrane protein","FIG00003972","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1021","peg","scaffold1|size1664507_922410_921925",922410,921925,"-","Phosphopantetheine adenylyltransferase (EC 2.7.7.3)","FIG00000261","isu;Coenzyme_A_Biosynthesis isu;CBSS-266117.6.peg.1260"]
["scaffold1|size1664507","fig|6666666.156949.peg.1022","peg","scaffold1|size1664507_922969_922415",922969,922415,"-","Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)","FIG00005547","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1023","peg","scaffold1|size1664507_922875_923036",922875,923036,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1024","peg","scaffold1|size1664507_923507_923292",923507,923292,"-","hypothetical Cytosolic Protein","FIG01308682","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1025","peg","scaffold1|size1664507_924068_923619",924068,923619,"-","ComK regulator","FIG00646197","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1026","peg","scaffold1|size1664507_924423_924184",924423,924184,"-","BH2600 unknown conserved protein in B. subtilis","FIG01320947","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1027","peg","scaffold1|size1664507_924837_924439",924837,924439,"-","BH2601 unknown conserved protein in B. subtilis","FIG01308426","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1028","peg","scaffold1|size1664507_926153_925068",926153,925068,"-","Allergen V5/Tpx-1 related","FIG01308181","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1029","peg","scaffold1|size1664507_926638_926192",926638,926192,"-","CBS domain protein","FIG01301466","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1030","peg","scaffold1|size1664507_926778_927140",926778,927140,"+","Phenylalanyl-tRNA synthetase alpha subunit","FIG01311589","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1031","peg","scaffold1|size1664507_928065_927172",928065,927172,"-","CtaG protein","FIG00895178","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1032","peg","scaffold1|size1664507_928424_928092",928424,928092,"-","Cytochrome c oxidase, subunit IV (EC 1.9.3.1)","FIG00005917","isu;Terminal_cytochrome_C_oxidases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1033","peg","scaffold1|size1664507_929050_928427",929050,928427,"-","Cytochrome c oxidase polypeptide III (EC 1.9.3.1)","FIG00000640","isu;CBSS-316057.3.peg.563 icw(1);Terminal_cytochrome_C_oxidases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1034","peg","scaffold1|size1664507_930918_929050",930918,929050,"-","Cytochrome c oxidase polypeptide I (EC 1.9.3.1)","FIG00132629","icw(2);Terminal_cytochrome_C_oxidases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1035","peg","scaffold1|size1664507_932021_930951",932021,930951,"-","Cytochrome c oxidase polypeptide II (EC 1.9.3.1)","FIG00041887","icw(2);CBSS-316057.3.peg.563 icw(3);Terminal_cytochrome_C_oxidases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1036","peg","scaffold1|size1664507_932219_932106",932219,932106,"-","FIG01241795: hypothetical protein","FIG01241794","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1037","peg","scaffold1|size1664507_933178_932261",933178,932261,"-","Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB","NA","icw(1);CBSS-316057.3.peg.563 icw(1);Biogenesis_of_cytochrome_c_oxidases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1038","peg","scaffold1|size1664507_933384_933536",933384,933536,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1039","peg","scaffold1|size1664507_933533_934453",933533,934453,"+","Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA","FIG00000802","isu;Biogenesis_of_cytochrome_c_oxidases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1040","peg","scaffold1|size1664507_938313_934867",938313,934867,"-","Pyruvate carboxylase (EC 6.4.1.1)","FIG00001308","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1041","peg","scaffold1|size1664507_939455_938388",939455,938388,"-","Cell division protein FtsW","FIG00000025","idu(2);Bacterial_Cell_Division idu(2);cell_division_cluster_containing_FtsQ idu(2);Bacterial_Cytoskeleton"]
["scaffold1|size1664507","fig|6666666.156949.peg.1042","peg","scaffold1|size1664507_939454_939570",939454,939570,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1043","peg","scaffold1|size1664507_940086_939805",940086,939805,"-","FIG00774243: hypothetical protein YlaN","FIG00774243","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1044","peg","scaffold1|size1664507_941113_940184",941113,940184,"-","Glutaminase (EC 3.5.1.2)","FIG00001174","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1045","peg","scaffold1|size1664507_941216_941701",941216,941701,"+","FIG01108239: hypothetical protein","FIG01226511","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1046","peg","scaffold1|size1664507_943032_941704",943032,941704,"-","Predicted ATPase related to phosphate starvation-inducible protein PhoH","FIG00075426","isu;Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1047","peg","scaffold1|size1664507_943187_943816",943187,943816,"+","Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)","FIG00014764","idu(2);ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1048","peg","scaffold1|size1664507_943902_944108",943902,944108,"+","FIG01225604: hypothetical protein","FIG01225603","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1049","peg","scaffold1|size1664507_944481_944164",944481,944164,"-","FIG01225318: hypothetical protein","FIG01225317","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1050","peg","scaffold1|size1664507_946376_944538",946376,944538,"-","GTP-binding protein TypA/BipA","FIG00000268","isu;Universal_GTPases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1051","peg","scaffold1|size1664507_946489_946677",946489,946677,"+","FIG01226072: hypothetical protein","FIG01226071","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1052","peg","scaffold1|size1664507_946949_947560",946949,947560,"+","FIG01228394: hypothetical protein","FIG01228393","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1053","peg","scaffold1|size1664507_947893_947600",947893,947600,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1054","peg","scaffold1|size1664507_948411_948019,scaffold1|size1664507_948015_947890",948411,947890,"-","RNA polymerase sigma factor RpoE","FIG00000973","isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.1055","peg","scaffold1|size1664507_948680_948411",948680,948411,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1056","peg","scaffold1|size1664507_950598_948670",950598,948670,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1057","peg","scaffold1|size1664507_950895_952460",950895,952460,"+","Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin","NA","idu(1);Listeria_Pathogenicity_Island_LIPI-1_extended"]
["scaffold1|size1664507","fig|6666666.156949.peg.1058","peg","scaffold1|size1664507_952559_952993",952559,952993,"+","Rrf2 family transcriptional regulator, group III","FIG00001194","idu(1);Rrf2_family_transcriptional_regulators"]
["scaffold1|size1664507","fig|6666666.156949.peg.1059","peg","scaffold1|size1664507_953069_953971",953069,953971,"+","probable lipase/esterase","FIG01567901","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1060","peg","scaffold1|size1664507_954112_955026",954112,955026,"+","O-Methyltransferase involved in polyketide biosynthesis","FIG01313020","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1061","peg","scaffold1|size1664507_955532_955104",955532,955104,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1062","peg","scaffold1|size1664507_956355_955558",956355,955558,"-","Inositol-1-monophosphatase (EC 3.1.3.25)","FIG00002332","isu;Di-Inositol-Phosphate_biosynthesis icw(1);CBSS-1313.3.peg.147"]
["scaffold1|size1664507","fig|6666666.156949.peg.1063","peg","scaffold1|size1664507_956740_956495",956740,956495,"-","FIG01225394: hypothetical protein","FIG01225393","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1064","peg","scaffold1|size1664507_956923_957561",956923,957561,"+","FIG01108286: hypothetical protein","FIG01225125","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1065","peg","scaffold1|size1664507_957860_957594",957860,957594,"-","FIG006438: hypothetical protein","FIG00006438","isu;CBSS-1313.3.peg.147"]
["scaffold1|size1664507","fig|6666666.156949.peg.1066","peg","scaffold1|size1664507_958045_959517",958045,959517,"+","Arginine decarboxylase (EC 4.1.1.19)","FIG00016145","idu(1);Arginine_and_Ornithine_Degradation idu(1);Polyamine_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1067","peg","scaffold1|size1664507_959690_959571",959690,959571,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1068","peg","scaffold1|size1664507_960109_960483",960109,960483,"+","small peptidoglycan-associated lipoprotein","FIG01325148","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1069","peg","scaffold1|size1664507_961940_960528",961940,960528,"-","Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)","FIG01303880","isu;TCA_Cycle isu;Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold1|size1664507","fig|6666666.156949.peg.1070","peg","scaffold1|size1664507_963273_961945",963273,961945,"-","Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)","FIG00136675","icw(2);Dehydrogenase_complexes isu;5-FCL-like_protein icw(3);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold1|size1664507","fig|6666666.156949.peg.1071","peg","scaffold1|size1664507_964365_963388",964365,963388,"-","Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1)","FIG00025527","icw(1);Dehydrogenase_complexes icw(2);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold1|size1664507","fig|6666666.156949.peg.1072","peg","scaffold1|size1664507_965484_964369",965484,964369,"-","Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1)","FIG00053889","isu;Dehydrogenase_complexes icw(1);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold1|size1664507","fig|6666666.156949.peg.1073","peg","scaffold1|size1664507_966579_965908",966579,965908,"-","Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)","FIG00014764","idu(2);ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1074","peg","scaffold1|size1664507_966793_966951",966793,966951,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1075","peg","scaffold1|size1664507_967061_967615",967061,967615,"+","Peptide deformylase (EC 3.5.1.88)","FIG00000017","icw(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase idu(1);CBSS-89187.3.peg.2957 idu(1);Translation_termination_factors_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.1076","peg","scaffold1|size1664507_968424_967651",968424,967651,"-","Hydrolase (HAD superfamily) in cluster with DUF1447","FIG00003535","isu;Bacterial_RNA-metabolizing_Zn-dependent_hydrolases icw(2);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase isu;Queuosine-Archaeosine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1077","peg","scaffold1|size1664507_968786_968646",968786,968646,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1078","peg","scaffold1|size1664507_968811_969020",968811,969020,"+","Protein of unknown function DUF1447","FIG00001611","icw(4);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases icw(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold1|size1664507","fig|6666666.156949.peg.1079","peg","scaffold1|size1664507_969026_970693",969026,970693,"+","Ribonuclease J1 (endonuclease and 5' exonuclease)","FIG00060571","icw(3);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases isu;Ribonucleases_in_Bacillus"]
["scaffold1|size1664507","fig|6666666.156949.peg.1080","peg","scaffold1|size1664507_972460_970727",972460,970727,"-","Adenine deaminase (EC 3.5.4.2)","FIG00001522","idu(1);Purine_conversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.1081","peg","scaffold1|size1664507_973281_972616",973281,972616,"-","Trk system potassium uptake protein TrkA","FIG00000838","icw(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);Hyperosmotic_potassium_uptake icw(2);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase idu(1);Potassium_homeostasis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1082","peg","scaffold1|size1664507_974171_973344",974171,973344,"-","FIG01231010: hypothetical protein","FIG01231009","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1083","peg","scaffold1|size1664507_975473_974187",975473,974187,"-","Sporulation kinase C (EC 2.7.13.3)","FIG00149214","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.1084","peg","scaffold1|size1664507_975941_975663",975941,975663,"-","Putative transition state regulator Abh","FIG00116582","isu;Poly-gamma-glutamate_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1085","peg","scaffold1|size1664507_976213_977232",976213,977232,"+","Cell-shape determining protein MreBH","FIG00132888","isu;Bacterial_Cytoskeleton"]
["scaffold1|size1664507","fig|6666666.156949.peg.1086","peg","scaffold1|size1664507_977333_977467",977333,977467,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1087","peg","scaffold1|size1664507_977576_978808",977576,978808,"+","Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.24)","FIG00044735","isu;Aminopeptidases_(EC_3.4.11.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1088","peg","scaffold1|size1664507_979753_978842",979753,978842,"-","2-dehydropantoate 2-reductase (EC 1.1.1.169)","FIG00034973","idu(1);Coenzyme_A_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1089","peg","scaffold1|size1664507_981433_979811",981433,979811,"-","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1090","peg","scaffold1|size1664507_981614_981883",981614,981883,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1091","peg","scaffold1|size1664507_982498_981917",982498,981917,"-","Signal peptidase I (EC 3.4.21.89)","FIG00000015","idu(3);Signal_peptidase idu(3);CBSS-176299.4.peg.1292"]
["scaffold1|size1664507","fig|6666666.156949.peg.1092","peg","scaffold1|size1664507_984550_982643",984550,982643,"-","PTS system, fructose-specific IIA component (EC 2.7.1.69) / PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69)","FIG00001234","isu;Fructose_utilization isu;Fructose_utilization isu;Fructose_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1093","peg","scaffold1|size1664507_985476_984565",985476,984565,"-","Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)","FIG00460883","isu;Lactose_and_Galactose_Uptake_and_Utilization isu;D-Tagatose_and_Galactitol_Utilization icw(2);Fructose_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1094","peg","scaffold1|size1664507_986228_985473",986228,985473,"-","Transcriptional repressor of the fructose operon, DeoR family","FIG00001452","icw(1);Fructose_utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1095","peg","scaffold1|size1664507_987701_986508",987701,986508,"-","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1096","peg","scaffold1|size1664507_988390_987698",988390,987698,"-","ABC transporter ATP-binding protein YvcR","FIG00007923","idu(3);Bacitracin_Stress_Response"]
["scaffold1|size1664507","fig|6666666.156949.peg.1097","peg","scaffold1|size1664507_989524_988391",989524,988391,"-","periplasmic component of efflux system","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1098","peg","scaffold1|size1664507_990224_989529",990224,989529,"-","hypothetical Membrane Spanning Protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1099","peg","scaffold1|size1664507_992148_990334",992148,990334,"-","Lipid A export ATP-binding/permease protein MsbA","FIG00017059","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1100","peg","scaffold1|size1664507_993917_992160",993917,992160,"-","Lipid A export ATP-binding/permease protein MsbA","FIG00017059","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1101","peg","scaffold1|size1664507_994374_994141",994374,994141,"-","Molybdenum cofactor biosynthesis protein MoaD","FIG00003839","isu;ar-104-EC_Molybdenum_cofactor_biosynthesis_moaABCDE icw(3);Molybdenum_cofactor_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1102","peg","scaffold1|size1664507_994840_994367",994840,994367,"-","Molybdenum cofactor biosynthesis protein MoaE","FIG00018405","icw(1);ar-104-EC_Molybdenum_cofactor_biosynthesis_moaABCDE isu;Molybdenum_cofactor_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1103","peg","scaffold1|size1664507_995361_994840",995361,994840,"-","Molybdopterin-guanine dinucleotide biosynthesis protein MobB","FIG00001323","icw(1);ar-431-EC_Molybdopterin-guanine_dinucleotide_biosynthesis icw(4);Molybdenum_cofactor_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1104","peg","scaffold1|size1664507_996614_995322",996614,995322,"-","Molybdopterin biosynthesis protein MoeA","FIG00018218","icw(1);Molybdenum_cofactor_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1105","peg","scaffold1|size1664507_997651_996632",997651,996632,"-","Molybdopterin biosynthesis protein MoeB","FIG00001230","icw(5);Molybdenum_cofactor_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1106","peg","scaffold1|size1664507_998301_997702",998301,997702,"-","Molybdopterin-guanine dinucleotide biosynthesis protein MobA","FIG00000902","isu;ar-431-EC_Molybdopterin-guanine_dinucleotide_biosynthesis icw(2);Molybdenum_cofactor_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1107","peg","scaffold1|size1664507_998438_999403",998438,999403,"+","Sporulation protein Cse15","FIG01380954","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1108","peg","scaffold1|size1664507_1000028_999444",1000028,999444,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1109","peg","scaffold1|size1664507_1000346_1000459",1000346,1000459,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1110","peg","scaffold1|size1664507_1000940_1000494",1000940,1000494,"-","FIG01225483: hypothetical protein","FIG01225482","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1111","peg","scaffold1|size1664507_1001552_1001010",1001552,1001010,"-","Alkyl hydroperoxide reductase subunit C-like protein","FIG01258694","isu;Oxidative_stress isu;Rubrerythrin isu;Thioredoxin-disulfide_reductase"]
["scaffold1|size1664507","fig|6666666.156949.peg.1112","peg","scaffold1|size1664507_1001789_1002592",1001789,1002592,"+","Potassium efflux system KefA protein / Small-conductance mechanosensitive channel","NA","idu(1);Potassium_homeostasis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1113","peg","scaffold1|size1664507_1002874_1002629",1002874,1002629,"-","FIG01227039: hypothetical protein","FIG01227038","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1114","peg","scaffold1|size1664507_1004060_1002936",1004060,1002936,"-","N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)","FIG00016846","idu(1);Lysine_Biosynthesis_DAP_Pathway idu(1);Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch"]
["scaffold1|size1664507","fig|6666666.156949.peg.1115","peg","scaffold1|size1664507_1004840_1004130",1004840,1004130,"-","2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)","FIG00001821","icw(1);Lysine_Biosynthesis_DAP_Pathway icw(1);Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch"]
["scaffold1|size1664507","fig|6666666.156949.peg.1116","peg","scaffold1|size1664507_1005400_1004960,scaffold1|size1664507_1004960_1004865",1005400,1004865,"-","Flavodoxin","FIG00010844","idu(1);Flavodoxin"]
["scaffold1|size1664507","fig|6666666.156949.peg.1117","peg","scaffold1|size1664507_1006309_1005416",1006309,1005416,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1118","peg","scaffold1|size1664507_1006775_1006299",1006775,1006299,"-","Flavodoxin","FIG00010844","idu(1);Flavodoxin"]
["scaffold1|size1664507","fig|6666666.156949.peg.1119","peg","scaffold1|size1664507_1007767_1006886",1007767,1006886,"-","Cys regulon transcriptional activator CysB","FIG00896278","isu;LysR-family_proteins_in_Escherichia_coli isu;Cysteine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1120","peg","scaffold1|size1664507_1008356_1007913",1008356,1007913,"-","Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)","FIG00020613","idu(1);Purine_conversions idu(1);Purine_salvage_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1121","peg","scaffold1|size1664507_1008685_1008494",1008685,1008494,"-","FIG01227021: hypothetical protein","FIG01227020","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1122","peg","scaffold1|size1664507_1009343_1008825",1009343,1008825,"-","DUF458 domain-containing protein","FIG01322759","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1123","peg","scaffold1|size1664507_1009692_1009453",1009692,1009453,"-","FIG01228827: hypothetical protein","FIG01228826","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1124","peg","scaffold1|size1664507_1009932_1009810",1009932,1009810,"-","FIG01245340: hypothetical protein","FIG01245338","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1125","peg","scaffold1|size1664507_1011534_1010311",1011534,1010311,"-","EAL-domain protein","FIG01227205","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1126","peg","scaffold1|size1664507_1012362_1011598",1012362,1011598,"-","Glucose 1-dehydrogenase (EC 1.1.1.47)","FIG00009828","idu(2);Entner-Doudoroff_Pathway idu(2);D-gluconate_and_ketogluconates_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1127","peg","scaffold1|size1664507_1012505_1013365",1012505,1013365,"+","Ser/Thr protein phosphatase family protein","FIG01315156","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1128","peg","scaffold1|size1664507_1013413_1013916",1013413,1013916,"+","Protein erfK/srfK precursor","FIG01344423","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1129","peg","scaffold1|size1664507_1013992_1015284",1013992,1015284,"+","Macrolide-efflux protein","FIG01231596","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1130","peg","scaffold1|size1664507_1015410_1015874",1015410,1015874,"+","FIG01226255: hypothetical protein","FIG01226254","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1131","peg","scaffold1|size1664507_1016802_1015918",1016802,1015918,"-","Chemotaxis protein CheV (EC 2.7.3.-)","FIG00007041","isu;Flagellar_motility isu;Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1132","peg","scaffold1|size1664507_1017034_1017195",1017034,1017195,"+","FIG01233382: hypothetical protein","FIG01233381","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1133","peg","scaffold1|size1664507_1017397_1018578",1017397,1018578,"+","N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)","FIG00054354","isu;Lysine_Biosynthesis_DAP_Pathway isu;Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch"]
["scaffold1|size1664507","fig|6666666.156949.peg.1134","peg","scaffold1|size1664507_1020408_1018588",1020408,1018588,"-","Sporulation kinase A (EC 2.7.13.3)","FIG01236287","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.1135","peg","scaffold1|size1664507_1022692_1020572",1022692,1020572,"-","Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) / Transpeptidase, Penicillin binding protein transpeptidase domain","FIG00012378","idu(3);Bacterial_Cell_Division idu(3);CBSS-83331.1.peg.3039 idu(3);Flagellum_in_Campylobacter idu(3);Bacterial_Cytoskeleton idu(3);Peptidoglycan_Biosynthesis idu(3);16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold1|size1664507","fig|6666666.156949.peg.1136","peg","scaffold1|size1664507_1023029_1023802",1023029,1023802,"+","FIG01228050: hypothetical protein","FIG01228049","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1137","peg","scaffold1|size1664507_1024014_1023883",1024014,1023883,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1138","peg","scaffold1|size1664507_1025029_1024139",1025029,1024139,"-","putative antibiotic hydrolase","FIG01242353","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1139","peg","scaffold1|size1664507_1026289_1025423",1026289,1025423,"-","2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)","FIG00133229","idu(1);Glycerate_metabolism idu(1);Allantoin_Utilization idu(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism idu(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo"]
["scaffold1|size1664507","fig|6666666.156949.peg.1140","peg","scaffold1|size1664507_1028394_1026427",1028394,1026427,"-","methyl-accepting chemotaxis protein","FIG01251342","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1141","peg","scaffold1|size1664507_1028529_1029230",1028529,1029230,"+","FIG01227912: hypothetical protein","FIG01227911","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1142","peg","scaffold1|size1664507_1030251_1029223",1030251,1029223,"-","Spore photoproduct lyase (EC 4.1.99.-)","FIG01315921","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1143","peg","scaffold1|size1664507_1030568_1030329",1030568,1030329,"-","Transcriptional regulator splA","FIG01226002","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1144","peg","scaffold1|size1664507_1032371_1030659",1032371,1030659,"-","Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)","FIG00028694","isu;Fructose_utilization isu;Mannitol_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1145","peg","scaffold1|size1664507_1032637_1032371",1032637,1032371,"-","Phosphocarrier protein of PTS system","FIG00000809","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1146","peg","scaffold1|size1664507_1034834_1032735",1034834,1032735,"-","PTS system, glucose-specific IIC component / PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIA component","FIG01962672","idu(1);Trehalose_Uptake_and_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1147","peg","scaffold1|size1664507_1035929_1035063",1035929,1035063,"-","Beta-glucoside bgl operon antiterminator, BglG family","FIG00001011","idu(2);Beta-Glucoside_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1148","peg","scaffold1|size1664507_1036957_1035992",1036957,1035992,"-","sugar-binding transcriptional regulator, LacI family","FIG01288647","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1149","peg","scaffold1|size1664507_1037064_1037189",1037064,1037189,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1150","peg","scaffold1|size1664507_1038334_1037240",1038334,1037240,"-","Proline dipeptidase (EC 3.4.13.9)","FIG00003427","isu;CBSS-269801.1.peg.809"]
["scaffold1|size1664507","fig|6666666.156949.peg.1151","peg","scaffold1|size1664507_1038500_1038703",1038500,1038703,"+","FIG01241095: hypothetical protein","FIG01241094","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1152","peg","scaffold1|size1664507_1040654_1038741",1040654,1038741,"-","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)","NA","idu(2);Copper_homeostasis idu(2);Copper_Transport_System"]
["scaffold1|size1664507","fig|6666666.156949.peg.1153","peg","scaffold1|size1664507_1041387_1040890",1041387,1040890,"-","Thiol:disulfide oxidoreductase related to ResA","NA","idu(1);Biogenesis_of_c-type_cytochromes idu(1);CBSS-196164.1.peg.461"]
["scaffold1|size1664507","fig|6666666.156949.peg.1154","peg","scaffold1|size1664507_1042775_1041438",1042775,1041438,"-","Stage V sporulation protein B","FIG00002090","idu(2);Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.1155","peg","scaffold1|size1664507_1043519_1042893",1043519,1042893,"-","Uncharacterized protein YkvT, NOT involved in spore germination","FIG00144902","isu;Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.1156","peg","scaffold1|size1664507_1044015_1043818",1044015,1043818,"-","FIG01235582: hypothetical protein","FIG01235580","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1157","peg","scaffold1|size1664507_1044178_1044363",1044178,1044363,"+","FIG01225871: hypothetical protein","FIG01225870","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1158","peg","scaffold1|size1664507_1044774_1044484",1044774,1044484,"-","conserved hypothetical protein","FIG00629156","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1159","peg","scaffold1|size1664507_1045013_1044882",1045013,1044882,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1160","peg","scaffold1|size1664507_1046444_1045509",1046444,1045509,"-","Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)","FIG00008294","idu(1);Murein_Hydrolases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1161","peg","scaffold1|size1664507_1046768_1046541",1046768,1046541,"-","FIG01232938: hypothetical protein","FIG01388347","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1162","peg","scaffold1|size1664507_1047983_1046784",1047983,1046784,"-","Spore protein YkvP","FIG01357710","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1163","peg","scaffold1|size1664507_1049210_1048464",1049210,1048464,"-","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)","FIG00621114","idu(6);CBSS-246196.1.peg.364 idu(6);Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.1164","peg","scaffold1|size1664507_1049379_1049735",1049379,1049735,"+","Transcriptional regulator, HxlR family","FIG00906075","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1165","peg","scaffold1|size1664507_1050793_1050296",1050793,1050296,"-","NADPH dependent preQ0 reductase (EC 1.7.1.13)","FIG00001032","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1166","peg","scaffold1|size1664507_1051542_1050811",1051542,1050811,"-","Queuosine Biosynthesis QueE Radical SAM","FIG00000490","icw(1);tRNA_modification_Bacteria icw(1);Queuosine-Archaeosine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1167","peg","scaffold1|size1664507_1051975_1051535",1051975,1051535,"-","6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I","FIG00138171","icw(2);tRNA_modification_Bacteria isu;Zinc_regulated_enzymes isu;Queuosine-Archaeosine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1168","peg","scaffold1|size1664507_1052636_1051977",1052636,1051977,"-","Queuosine Biosynthesis QueC ATPase","FIG00000491","isu;tRNA_modification_Bacteria icw(2);Queuosine-Archaeosine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1169","peg","scaffold1|size1664507_1053992_1052949",1053992,1052949,"-","membrane protein, putative","FIG00439698","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1170","peg","scaffold1|size1664507_1054486_1056456",1054486,1056456,"+","ClpB protein","FIG00025216","isu;Proteolysis_in_bacteria,_ATP-dependent isu;Type_VI_secretion_systems isu;USS-DB-7 isu;Protein_chaperones"]
["scaffold1|size1664507","fig|6666666.156949.peg.1171","peg","scaffold1|size1664507_1056839_1057651",1056839,1057651,"+","Flagellar motor rotation protein MotA","FIG00000438","icw(1);Flagellar_motility icw(1);Flagellum"]
["scaffold1|size1664507","fig|6666666.156949.peg.1172","peg","scaffold1|size1664507_1057623_1058408",1057623,1058408,"+","Flagellar motor rotation protein MotB","FIG00025360","idu(1);Flagellar_motility idu(1);Flagellum idu(1);CBSS-323098.3.peg.2823"]
["scaffold1|size1664507","fig|6666666.156949.peg.1173","peg","scaffold1|size1664507_1058885_1058448",1058885,1058448,"-","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1174","peg","scaffold1|size1664507_1058870_1058983",1058870,1058983,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1175","peg","scaffold1|size1664507_1059096_1060598",1059096,1060598,"+","sensor histidine kinase KinD","FIG01343651","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1176","peg","scaffold1|size1664507_1061057_1060626",1061057,1060626,"-","small membrane protein","FIG01497856","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1177","peg","scaffold1|size1664507_1061400_1061143",1061400,1061143,"-","Spo0E regulatory protein, specific dephosphorylation of Spo0A-P (stage 0 sporulation)","FIG01235387","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1178","peg","scaffold1|size1664507_1061603_1061923",1061603,1061923,"+","DUF1232 domain-containing protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1179","peg","scaffold1|size1664507_1062500_1061964",1062500,1061964,"-","1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)","FIG00002107","icw(2);Methionine_Salvage"]
["scaffold1|size1664507","fig|6666666.156949.peg.1180","peg","scaffold1|size1664507_1063809_1063126,scaffold1|size1664507_1063126_1062515",1063809,1062515,"-","Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)","FIG00002176","isu;Methionine_Salvage"]
["scaffold1|size1664507","fig|6666666.156949.peg.1181","peg","scaffold1|size1664507_1065050_1063806",1065050,1063806,"-","2,3-diketo-5-methylthiopentyl-1-phosphate enolase (EC 5.3.2.5)","FIG00003645","icw(3);Methionine_Salvage"]
["scaffold1|size1664507","fig|6666666.156949.peg.1182","peg","scaffold1|size1664507_1066443_1065247",1066443,1065247,"-","Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase","FIG00003232","isu;Methionine_Salvage"]
["scaffold1|size1664507","fig|6666666.156949.peg.1183","peg","scaffold1|size1664507_1066538_1067317",1066538,1067317,"+","Aliphatic amidase AmiE (EC 3.5.1.4)","FIG01324097","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1184","peg","scaffold1|size1664507_1067647_1068843",1067647,1068843,"+","5-methylthioribose kinase (EC 2.7.1.100)","FIG00097608","icw(1);Methionine_Salvage"]
["scaffold1|size1664507","fig|6666666.156949.peg.1185","peg","scaffold1|size1664507_1068851_1069912",1068851,1069912,"+","Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)","FIG00001494","icw(2);Methionine_Salvage"]
["scaffold1|size1664507","fig|6666666.156949.peg.1186","peg","scaffold1|size1664507_1070071_1069946",1070071,1069946,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1187","peg","scaffold1|size1664507_1070658_1070161",1070658,1070161,"-","Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)","FIG00000328","idu(1);DNA_repair,_bacterial idu(1);CBSS-393124.3.peg.2657"]
["scaffold1|size1664507","fig|6666666.156949.peg.1188","peg","scaffold1|size1664507_1072871_1070655",1072871,1070655,"-","Two-component sensor histidine kinase","FIG01332169","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1189","peg","scaffold1|size1664507_1073097_1074146",1073097,1074146,"+","membrane protein, putative","FIG00439698","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1190","peg","scaffold1|size1664507_1074370_1074188",1074370,1074188,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1191","peg","scaffold1|size1664507_1074528_1074373",1074528,1074373,"-","FIG01233072: hypothetical protein","FIG01233070","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1192","peg","scaffold1|size1664507_1076022_1074673",1076022,1074673,"-","Potassium uptake protein, integral membrane component, KtrD","FIG00774534","isu;Hyperosmotic_potassium_uptake"]
["scaffold1|size1664507","fig|6666666.156949.peg.1193","peg","scaffold1|size1664507_1077092_1076196",1077092,1076196,"-","Probable protease htpX homolog (EC 3.4.24.-)","FIG01385468","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1194","peg","scaffold1|size1664507_1077263_1077964",1077263,1077964,"+","FIG01228638: hypothetical protein","FIG01228636","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1195","peg","scaffold1|size1664507_1078095_1078289",1078095,1078289,"+","Small acid-soluble spore protein, alpha/beta family, SASP_6","FIG00012516","isu;Small_acid-soluble_spore_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1196","peg","scaffold1|size1664507_1079445_1078300",1079445,1078300,"-","FIG01228869: hypothetical protein","FIG01228867","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1197","peg","scaffold1|size1664507_1080197_1079442",1080197,1079442,"-","RNA polymerase heat shock sigma factor SigI","FIG00081664","isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.1198","peg","scaffold1|size1664507_1081255_1080461",1081255,1080461,"-","TerC-like integral membrane protein","FIG01333072","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1199","peg","scaffold1|size1664507_1081365_1081490",1081365,1081490,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1200","peg","scaffold1|size1664507_1082147_1081512",1082147,1081512,"-","FIG139438: lipoprotein B","FIG00060285","idu(1);Stationary_phase_repair_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1201","peg","scaffold1|size1664507_1082511_1084760",1082511,1084760,"+","Predicted signal transduction protein","FIG00004628","isu;Flagellar_motility"]
["scaffold1|size1664507","fig|6666666.156949.peg.1202","peg","scaffold1|size1664507_1084848_1085732",1084848,1085732,"+","Ku domain protein","FIG00001754","isu;DNA_Repair_Base_Excision isu;Nonhomologous_End-Joining_in_Bacteria isu;DNA_ligases isu;Bacillus_subtilis_scratch_-_gjo"]
["scaffold1|size1664507","fig|6666666.156949.peg.1203","peg","scaffold1|size1664507_1085874_1087571",1085874,1087571,"+","ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD","FIG00002268","icw(1);DNA_Repair_Base_Excision icw(1);Nonhomologous_End-Joining_in_Bacteria icw(1);DNA_ligases icw(1);Bacillus_subtilis_scratch_-_gjo"]
["scaffold1|size1664507","fig|6666666.156949.peg.1204","peg","scaffold1|size1664507_1088610_1087597",1088610,1087597,"-","Glycosyltransferase","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1205","peg","scaffold1|size1664507_1090317_1088623",1090317,1088623,"-","FIG00672966: hypothetical protein","FIG01422112","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1206","peg","scaffold1|size1664507_1090510_1091322",1090510,1091322,"+","phosphoesterase","FIG00673828","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1207","peg","scaffold1|size1664507_1091994_1091350",1091994,1091350,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1208","peg","scaffold1|size1664507_1091993_1093114",1091993,1093114,"+","1,2-diacylglycerol 3-glucosyltransferase (EC 2.4.1.157); diglucosyldiacylglycerol synthase (LTA membrane anchor synthesis); putative","FIG00134057","idu(1);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1209","peg","scaffold1|size1664507_1093593_1093129",1093593,1093129,"-","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1210","peg","scaffold1|size1664507_1093908_1093726",1093908,1093726,"-","FIG01236524: hypothetical protein","FIG01236522","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1211","peg","scaffold1|size1664507_1094151_1093996",1094151,1093996,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1212","peg","scaffold1|size1664507_1094346_1094678",1094346,1094678,"+","global nitrogen regulation (positive regulation of nrgAB, nasB, gabP, ureABC; negative regulation of glnRA)","FIG01231506","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1213","peg","scaffold1|size1664507_1096076_1094721",1096076,1094721,"-","Mg/Co/Ni transporter MgtE / CBS domain","FIG00437800","isu;Magnesium_transport"]
["scaffold1|size1664507","fig|6666666.156949.peg.1214","peg","scaffold1|size1664507_1096718_1096581",1096718,1096581,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1215","peg","scaffold1|size1664507_1097313_1096801",1097313,1096801,"-","YKOJ","FIG01233950","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1216","peg","scaffold1|size1664507_1098085_1097405",1098085,1097405,"-","YKOI","FIG01237807","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1217","peg","scaffold1|size1664507_1099446_1098082",1099446,1098082,"-","sensor histidine kinase","FIG00431356","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1218","peg","scaffold1|size1664507_1100112_1099450",1100112,1099450,"-","two-component response regulator","FIG00627566","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1219","peg","scaffold1|size1664507_1100447_1101049",1100447,1101049,"+","Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine","FIG00136386","isu;Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1220","peg","scaffold1|size1664507_1101051_1101650",1101051,1101650,"+","Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine","FIG00010078","icw(1);ECF_class_transporters icw(2);Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1221","peg","scaffold1|size1664507_1101637_1103280",1101637,1103280,"+","Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine","FIG00009894","icw(2);ECF_class_transporters"]
["scaffold1|size1664507","fig|6666666.156949.peg.1222","peg","scaffold1|size1664507_1103255_1104019",1103255,1104019,"+","Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine","FIG00032753","isu;ECF_class_transporters icw(1);Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1223","peg","scaffold1|size1664507_1104883_1104050",1104883,1104050,"-","RsbR, positive regulator of sigma-B","FIG00001285","idu(5);SigmaB_stress_responce_regulation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1224","peg","scaffold1|size1664507_1105155_1105003",1105155,1105003,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1225","peg","scaffold1|size1664507_1105106_1106065",1105106,1106065,"+","Major intracellular serine protease precursor (EC 3.4.21.-)","FIG01357100","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1226","peg","scaffold1|size1664507_1106358_1106483",1106358,1106483,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1227","peg","scaffold1|size1664507_1106480_1108768",1106480,1108768,"+","5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)","FIG00000683","isu;Methionine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1228","peg","scaffold1|size1664507_1108941_1109411",1108941,1109411,"+","Guanine deaminase (EC 3.5.4.3)","FIG00117785","isu;Purine_conversions isu;Purine_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1229","peg","scaffold1|size1664507_1109626_1109489",1109626,1109489,"-","FIG01246927: hypothetical protein","FIG01459626","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1230","peg","scaffold1|size1664507_1110073_1109663",1110073,1109663,"-","Organic hydroperoxide resistance protein","FIG00138617","icw(2);Oxidative_stress icw(2);CBSS-269482.1.peg.1294"]
["scaffold1|size1664507","fig|6666666.156949.peg.1231","peg","scaffold1|size1664507_1110216_1110659",1110216,1110659,"+","Organic hydroperoxide resistance transcriptional regulator","FIG00025887","isu;Oxidative_stress isu;CBSS-269482.1.peg.1294"]
["scaffold1|size1664507","fig|6666666.156949.peg.1232","peg","scaffold1|size1664507_1111115_1110690",1111115,1110690,"-","Organic hydroperoxide resistance protein","FIG00138617","icw(2);Oxidative_stress icw(2);CBSS-269482.1.peg.1294"]
["scaffold1|size1664507","fig|6666666.156949.peg.1233","peg","scaffold1|size1664507_1112488_1111241",1112488,1111241,"-","Gamma-glutamyl phosphate reductase (EC 1.2.1.41)","FIG00000365","isu;Proline_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1234","peg","scaffold1|size1664507_1113597_1112500",1113597,1112500,"-","Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA","FIG00000351","icw(1);Proline_Synthesis icw(1);Proline_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1235","peg","scaffold1|size1664507_1114850_1113948",1114850,1113948,"-","Formyltetrahydrofolate deformylase (EC 3.5.1.10)","FIG00000507","isu;5-FCL-like_protein isu;One-carbon_metabolism_by_tetrahydropterines"]
["scaffold1|size1664507","fig|6666666.156949.peg.1236","peg","scaffold1|size1664507_1115238_1114921",1115238,1114921,"-","Broad-specificity multidrug efflux pump YkkD","FIG01963593","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1237","peg","scaffold1|size1664507_1115576_1115238",1115576,1115238,"-","Quaternary ammonium compound-resistance protein SugE","FIG00948922","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1238","peg","scaffold1|size1664507_1116316_1115798",1116316,1115798,"-","FIG01227499: hypothetical protein","FIG01227498","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1239","peg","scaffold1|size1664507_1116833_1116306",1116833,1116306,"-","FIG01227877: hypothetical protein","FIG01227876","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1240","peg","scaffold1|size1664507_1117656_1116925",1117656,1116925,"-","probable membrane protein yetF","FIG01308948","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1241","peg","scaffold1|size1664507_1117916_1118029",1117916,1118029,"+","Uncharacterized protein ykzH","FIG01434336","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1242","peg","scaffold1|size1664507_1119305_1118106",1119305,1118106,"-","Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)","FIG00000983","idu(1);Glutaredoxins idu(1);Flavohaemoglobin idu(1);Bacterial_hemoglobins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1243","peg","scaffold1|size1664507_1120106_1119546",1120106,1119546,"-","Acyl-CoA hydrolase (EC 3.1.2.20)","FIG01955826","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1244","peg","scaffold1|size1664507_1120224_1121084",1120224,1121084,"+","NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)","FIG00002156","isu;Dimethylarginine_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1245","peg","scaffold1|size1664507_1121174_1122223",1121174,1122223,"+","6-phosphogluconolactonase (EC 3.1.1.31)","FIG01964866","isu;Pentose_phosphate_pathway isu;Entner-Doudoroff_Pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.1246","peg","scaffold1|size1664507_1123256_1122267",1123256,1122267,"-","Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)","FIG00018865","idu(2);ABC_transporter_oligopeptide_(TC_3.A.1.5.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1247","peg","scaffold1|size1664507_1124159_1123269",1124159,1123269,"-","NLP/P60 family protein","FIG00012683","isu;CBSS-393121.3.peg.2760"]
["scaffold1|size1664507","fig|6666666.156949.peg.1248","peg","scaffold1|size1664507_1125256_1124156",1125256,1124156,"-","L-alanine-DL-glutamate epimerase","FIG00908297","isu;Muconate_lactonizing_enzyme_family isu;Recycling_of_Peptidoglycan_Amino_Acids"]
["scaffold1|size1664507","fig|6666666.156949.peg.1249","peg","scaffold1|size1664507_1126212_1125253",1126212,1125253,"-","Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)","FIG00004788","idu(1);Murein_Hydrolases icw(1);Recycling_of_Peptidoglycan_Amino_Acids idu(1);Metallocarboxypeptidases_(EC_3.4.17.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1250","peg","scaffold1|size1664507_1127931_1126300",1127931,1126300,"-","Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)","NA","icw(3);ABC_transporter_dipeptide_(TC_3.A.1.5.2) isu;Bacterial_Chemotaxis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1251","peg","scaffold1|size1664507_1128959_1127952",1128959,1127952,"-","Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)","FIG00014907","icw(1);ABC_transporter_dipeptide_(TC_3.A.1.5.2)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1252","peg","scaffold1|size1664507_1129926_1128964",1129926,1128964,"-","Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)","NA","icw(2);ABC_transporter_dipeptide_(TC_3.A.1.5.2)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1253","peg","scaffold1|size1664507_1130858_1129932",1130858,1129932,"-","Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)","NA","isu;ABC_transporter_dipeptide_(TC_3.A.1.5.2)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1254","peg","scaffold1|size1664507_1131699_1130875",1131699,1130875,"-","D-aminopeptidase (EC 3.4.11.-)","FIG01334027","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1255","peg","scaffold1|size1664507_1131725_1131856",1131725,1131856,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1256","peg","scaffold1|size1664507_1132646_1131828",1132646,1131828,"-","Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like","FIG00132590","isu;Proline_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1257","peg","scaffold1|size1664507_1132812_1134173",1132812,1134173,"+","Serine protease, DegP/HtrA, do-like (EC 3.4.21.-)","FIG00083017","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1258","peg","scaffold1|size1664507_1135662_1134691",1135662,1134691,"-","Glycosyltransferase","FIG00007960","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1259","peg","scaffold1|size1664507_1137842_1135674",1137842,1135674,"-","FIG01241347: hypothetical protein","FIG01241344","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1260","peg","scaffold1|size1664507_1139047_1138097",1139047,1138097,"-","Glyoxalase family protein","FIG00007915","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1261","peg","scaffold1|size1664507_1139435_1140751",1139435,1140751,"+","amino acid permease family protein","FIG01308903","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1262","peg","scaffold1|size1664507_1141027_1141644",1141027,1141644,"+","Phosphate transport regulator (distant homolog of PhoU)","FIG00022740","icw(1);Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1263","peg","scaffold1|size1664507_1141657_1142658",1141657,1142658,"+","Probable low-affinity inorganic phosphate transporter","FIG00009601","isu;Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1264","peg","scaffold1|size1664507_1142768_1143514",1142768,1143514,"+","alternate gene name: ykaC lethal when synthesized during vegetative growth in the absence of SpoIISB","FIG01228779","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1265","peg","scaffold1|size1664507_1143514_1143684",1143514,1143684,"+","SpoIISB","FIG01226214","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1266","peg","scaffold1|size1664507_1143785_1143907",1143785,1143907,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1267","peg","scaffold1|size1664507_1144837_1143944",1144837,1143944,"-","N-acetylmuramoyl-L-alanine amidase CwlH implicated in mother cell lysis (EC 3.5.1.28)","FIG01237668","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1268","peg","scaffold1|size1664507_1145113_1144850",1145113,1144850,"-","holin","FIG00630076","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1269","peg","scaffold1|size1664507_1145395_1145126",1145395,1145126,"-","phage related protein","FIG01240002","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1270","peg","scaffold1|size1664507_1146287_1145448",1146287,1145448,"-","Phage-like element PBSX protein xepA (Protein xkdY)","FIG01234469","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1271","peg","scaffold1|size1664507_1146495_1146331",1146495,1146331,"-","FIG01236576: hypothetical protein","FIG01236574","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1272","peg","scaffold1|size1664507_1146821_1146492",1146821,1146492,"-","FIG01238688: hypothetical protein","FIG01238687","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1273","peg","scaffold1|size1664507_1148892_1146835",1148892,1146835,"-","Uncharacterized protein yqcC","FIG01239363","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1274","peg","scaffold1|size1664507_1149167_1148895",1149167,1148895,"-","FIG01238565: hypothetical protein","FIG01238562","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1275","peg","scaffold1|size1664507_1149742_1149164",1149742,1149164,"-","Phage-like element PBSX protein xkdU","FIG01230818","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1276","peg","scaffold1|size1664507_1150772_1149726",1150772,1149726,"-","Phage baseplate","FIG01305804","isu;Phage_baseplate_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1277","peg","scaffold1|size1664507_1151190_1150765",1151190,1150765,"-","Phage-like element PBSX protein xkdS","FIG00513535","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1278","peg","scaffold1|size1664507_1151513_1151247",1151513,1151247,"-","FIG01234021: hypothetical protein","FIG01234019","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1279","peg","scaffold1|size1664507_1152490_1151513",1152490,1151513,"-","Phage-like element PBSX protein xkdQ","FIG00671080","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1280","peg","scaffold1|size1664507_1153165_1152506",1153165,1152506,"-","Phage-like element PBSX protein xkdP","FIG01344725","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1281","peg","scaffold1|size1664507_1156856_1153158",1156856,1153158,"-","Phage tail length tape-measure protein","FIG00011468","isu;Phage_tail_proteins isu;Phage_tail_proteins_2"]
["scaffold1|size1664507","fig|6666666.156949.peg.1282","peg","scaffold1|size1664507_1157666_1157223,scaffold1|size1664507_1157223_1157041",1157666,1157041,"-","Phage-like element PBSX protein xkdN","FIG01365837","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1283","peg","scaffold1|size1664507_1158202_1157759",1158202,1157759,"-","Phage tail fibers","FIG01304225","isu;Phage_tail_fiber_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1284","peg","scaffold1|size1664507_1159604_1158204",1159604,1158204,"-","Phage-like element PBSX protein xkdK","FIG00514072","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1285","peg","scaffold1|size1664507_1159819_1159601",1159819,1159601,"-","FIG01230007: hypothetical protein","FIG01230005","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1286","peg","scaffold1|size1664507_1160263_1159823",1160263,1159823,"-","Phage-like element PBSX protein xkdJ","FIG01230647","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1287","peg","scaffold1|size1664507_1160761_1160276",1160761,1160276,"-","Lin1275 protein","FIG01226412","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1288","peg","scaffold1|size1664507_1161114_1160758",1161114,1160758,"-","Phage-like element PBSX protein xkdH","FIG01227966","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1289","peg","scaffold1|size1664507_1161494_1161111",1161494,1161111,"-","YqbG","FIG01225885","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1290","peg","scaffold1|size1664507_1162451_1161516",1162451,1161516,"-","Phage-like element PBSX protein xkdG","FIG01319911","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1291","peg","scaffold1|size1664507_1163304_1162477",1163304,1162477,"-","FIG01230357: hypothetical protein","FIG01230356","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1292","peg","scaffold1|size1664507_1164811_1163324",1164811,1163324,"-","Phage-like element PBSX protein xkdE","FIG01327823","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1293","peg","scaffold1|size1664507_1166116_1164815",1166116,1164815,"-","Phage terminase, large subunit [SA bacteriophages 11, Mu50B]","FIG01233775","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1294","peg","scaffold1|size1664507_1166910_1166113",1166910,1166113,"-","Phage terminase small subunit","FIG00433263","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1295","peg","scaffold1|size1664507_1167536_1167027",1167536,1167027,"-","RNA polymerase sigma-70 factor","FIG01303902","idu(2);CBSS-316057.3.peg.1308 idu(2);Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.1296","peg","scaffold1|size1664507_1167858_1167652",1167858,1167652,"-","Phage-like element PBSX protein xtrA","FIG01328779","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1297","peg","scaffold1|size1664507_1168205_1167855",1168205,1167855,"-","XkdD","FIG01234899","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1298","peg","scaffold1|size1664507_1168457_1168290",1168457,1168290,"-","FIG01227758: hypothetical protein","FIG01227757","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1299","peg","scaffold1|size1664507_1169092_1168457",1169092,1168457,"-","DNA replication protein DnaC","FIG00763261","idu(1);DNA-replication"]
["scaffold1|size1664507","fig|6666666.156949.peg.1300","peg","scaffold1|size1664507_1169993_1169157",1169993,1169157,"-","Phage-like element PBSX protein xkdB","FIG01372523","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1301","peg","scaffold1|size1664507_1170159_1169980",1170159,1169980,"-","FIG01238057: hypothetical protein","FIG01238056","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1302","peg","scaffold1|size1664507_1170338_1170679",1170338,1170679,"+","negative regulation of the defective prophage PBSX genes","FIG01226615","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1303","peg","scaffold1|size1664507_1170842_1171438",1170842,1171438,"+","phage-like element PBSX protein XkdA","FIG01310999","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1304","peg","scaffold1|size1664507_1172318_1171482",1172318,1171482,"-","Catalase (EC 1.11.1.6)","FIG00000313","idu(4);Oxidative_stress idu(4);Protection_from_Reactive_Oxygen_Species"]
["scaffold1|size1664507","fig|6666666.156949.peg.1305","peg","scaffold1|size1664507_1172997_1172395",1172997,1172395,"-","FIG01231560: hypothetical protein","FIG01231557","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1306","peg","scaffold1|size1664507_1173102_1173479",1173102,1173479,"+","DUF1696 domain-containing protein","FIG01307504","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1307","peg","scaffold1|size1664507_1174472_1173519",1174472,1173519,"-","N-acetylmuramoyl-L-alanine amidase( EC:3.5.1.28 )","FIG01367732","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1308","peg","scaffold1|size1664507_1174593_1174850",1174593,1174850,"+","FIG01228169: hypothetical protein","FIG01228167","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1309","peg","scaffold1|size1664507_1175015_1174881",1175015,1174881,"-","inhibitor of the activity of phosphatase RapA","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1310","peg","scaffold1|size1664507_1176135_1175005",1176135,1175005,"-","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1311","peg","scaffold1|size1664507_1177557_1176286",1177557,1176286,"-","Cell division protein FtsH (EC 3.4.24.-)","FIG01120704","idu(1);Bacterial_Cell_Division idu(1);Cell_division-ribosomal_stress_proteins_cluster idu(1);Folate_biosynthesis_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1312","peg","scaffold1|size1664507_1177706_1178170",1177706,1178170,"+","FIG01232970: hypothetical protein","FIG01232969","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1313","peg","scaffold1|size1664507_1178395_1179159",1178395,1179159,"+","Putative sulfate permease","FIG00004276","isu;Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1314","peg","scaffold1|size1664507_1180693_1179200",1180693,1179200,"-","Altronate dehydratase (EC 4.2.1.7)","FIG00001417","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1315","peg","scaffold1|size1664507_1182132_1180690",1182132,1180690,"-","Altronate oxidoreductase (EC 1.1.1.58)","FIG00002628","icw(1);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1316","peg","scaffold1|size1664507_1183210_1182209",1183210,1182209,"-","Hexuronate utilization operon transcriptional repressor ExuR","FIG00029606","icw(4);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1317","peg","scaffold1|size1664507_1184566_1183298",1184566,1183298,"-","Hexuronate transporter","FIG00040843","icw(2);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1318","peg","scaffold1|size1664507_1185450_1184614",1185450,1184614,"-","D-mannonate oxidoreductase (EC 1.1.1.57)","FIG00001516","icw(4);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1319","peg","scaffold1|size1664507_1186526_1185447",1186526,1185447,"-","Mannonate dehydratase (EC 4.2.1.8)","FIG00060024","isu;D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1320","peg","scaffold1|size1664507_1187570_1186551",1187570,1186551,"-","Starvation sensing protein RspB","FIG01069843","isu;Carbon_Starvation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1321","peg","scaffold1|size1664507_1188588_1188169,scaffold1|size1664507_1188169_1187576",1188588,1187576,"-","(R)-2-hydroxyacid dehydrogenase, similar to L-sulfolactate dehydrogenase (EC 1.1.1.272)","FIG01303804","isu;Glyoxylate_bypass"]
["scaffold1|size1664507","fig|6666666.156949.peg.1322","peg","scaffold1|size1664507_1190072_1188693",1190072,1188693,"-","Glucuronide transporter UidB","FIG01304772","icw(1);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1323","peg","scaffold1|size1664507_1191549_1190140",1191549,1190140,"-","Uronate isomerase (EC 5.3.1.12)","FIG00001411","icw(2);D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1324","peg","scaffold1|size1664507_1191715_1191581",1191715,1191581,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1325","peg","scaffold1|size1664507_1192937_1191759",1192937,1191759,"-","NADH dehydrogenase (EC 1.6.99.3)","FIG00008708","idu(2);Respiratory_dehydrogenases_1 idu(2);Riboflavin_synthesis_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1326","peg","scaffold1|size1664507_1193399_1192977",1193399,1192977,"-","FIG01228225: hypothetical protein","FIG01228223","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1327","peg","scaffold1|size1664507_1193631_1193512",1193631,1193512,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1328","peg","scaffold1|size1664507_1194285_1193788",1194285,1193788,"-","Cupin domain-containing protein","FIG01349555","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1329","peg","scaffold1|size1664507_1194367_1194248",1194367,1194248,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1330","peg","scaffold1|size1664507_1194417_1195391",1194417,1195391,"+","membrane protein, putative","FIG00439698","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1331","peg","scaffold1|size1664507_1195511_1196263",1195511,1196263,"+","YbbL ABC transporter ATP-binding protein","FIG00012845","icw(1);Broadly_distributed_proteins_not_in_subsystems"]
["scaffold1|size1664507","fig|6666666.156949.peg.1332","peg","scaffold1|size1664507_1196263_1197015",1196263,1197015,"+","YbbM seven transmembrane helix protein","FIG00004730","isu;Broadly_distributed_proteins_not_in_subsystems"]
["scaffold1|size1664507","fig|6666666.156949.peg.1333","peg","scaffold1|size1664507_1197873_1197061",1197873,1197061,"-","Uroporphyrinogen-III synthase (EC 4.2.1.75)","FIG00056694","idu(2);Heme_and_Siroheme_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1334","peg","scaffold1|size1664507_1198047_1198235",1198047,1198235,"+","FIG01231759: hypothetical protein","FIG01231758","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1335","peg","scaffold1|size1664507_1199454_1198276",1199454,1198276,"-","Glycosyl transferase Family 1","FIG01228988","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1336","peg","scaffold1|size1664507_1200667_1199477",1200667,1199477,"-","putative cytochrome P450 hydroxylase","FIG00032437","idu(3);Nitric_oxide_synthase"]
["scaffold1|size1664507","fig|6666666.156949.peg.1337","peg","scaffold1|size1664507_1201058_1201336",1201058,1201336,"+","Uncharacterized protein yjiA precursor","FIG01669640","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1338","peg","scaffold1|size1664507_1201984_1201367",1201984,1201367,"-","MutT/nudix family protein","FIG01323436","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1339","peg","scaffold1|size1664507_1202713_1202072",1202713,1202072,"-","FIG01237457: hypothetical protein","FIG01237456","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1340","peg","scaffold1|size1664507_1203471_1202911",1203471,1202911,"-","Hypothetical protein YrhD","FIG00002162","icw(1);Formate_hydrogenase"]
["scaffold1|size1664507","fig|6666666.156949.peg.1341","peg","scaffold1|size1664507_1206421_1203464",1206421,1203464,"-","Formate dehydrogenase related protein","FIG00002024","idu(1);Formate_hydrogenase"]
["scaffold1|size1664507","fig|6666666.156949.peg.1342","peg","scaffold1|size1664507_1206567_1207142",1206567,1207142,"+","Uncharacterized protein yjgB precursor","FIG01246979","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1343","peg","scaffold1|size1664507_1208543_1207938,scaffold1|size1664507_1207938_1207654,scaffold1|size1664507_1207650_1207546",1208543,1207546,"-","FIG01237275: hypothetical protein","FIG01237274","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1344","peg","scaffold1|size1664507_1208656_1208540",1208656,1208540,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1345","peg","scaffold1|size1664507_1208670_1208837",1208670,1208837,"+","YjfB","FIG01227119","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1346","peg","scaffold1|size1664507_1208966_1209439",1208966,1209439,"+","FIG01236863: hypothetical protein","FIG01236862","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1347","peg","scaffold1|size1664507_1210882_1209479",1210882,1209479,"-","Peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-)","FIG00009450","idu(2);Polysaccharide_deacetylases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1348","peg","scaffold1|size1664507_1211137_1211370",1211137,1211370,"+","Spore coat protein T precursor","FIG01498692","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1349","peg","scaffold1|size1664507_1211521_1212483",1211521,1212483,"+","Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB","NA","idu(1);CBSS-316057.3.peg.563 idu(1);Biogenesis_of_cytochrome_c_oxidases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1350","peg","scaffold1|size1664507_1212624_1212502",1212624,1212502,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1351","peg","scaffold1|size1664507_1213089_1213418",1213089,1213418,"+","FIG01229313: hypothetical protein","FIG01620537","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1352","peg","scaffold1|size1664507_1213550_1213744",1213550,1213744,"+","FIG01229484: hypothetical protein","FIG01229481","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1353","peg","scaffold1|size1664507_1214263_1213784",1214263,1213784,"-","Cys-tRNA(Pro) deacylase YbaK","FIG00003050","isu;tRNA_aminoacylation,_Pro"]
["scaffold1|size1664507","fig|6666666.156949.peg.1354","peg","scaffold1|size1664507_1215106_1215612",1215106,1215612,"+","acetyltransferase, GNAT family","FIG01315364","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1355","peg","scaffold1|size1664507_1216071_1215658",1216071,1215658,"-","FIG01235032: hypothetical protein","FIG01335699","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1356","peg","scaffold1|size1664507_1217257_1216310",1217257,1216310,"-","Mannose-6-phosphate isomerase (EC 5.3.1.8)","FIG00598409","icw(1);Mannose_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1357","peg","scaffold1|size1664507_1219212_1217272",1219212,1217272,"-","PTS system, mannose-specific IIB component (EC 2.7.1.69) / PTS system, mannose-specific IIC component (EC 2.7.1.69) / PTS system, mannose-specific IIA component (EC 2.7.1.69)","FIG01962533","idu(2);Mannose_Metabolism idu(1);Mannose_Metabolism idu(2);Mannose_Metabolism idu(2);Sialic_Acid_Metabolism idu(1);Sialic_Acid_Metabolism idu(2);Sialic_Acid_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1358","peg","scaffold1|size1664507_1221306_1219360",1221306,1219360,"-","Activator of the mannose operon (transcriptional antiterminator), BglG family","FIG00089473","icw(2);Mannose_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1359","peg","scaffold1|size1664507_1221918_1221601",1221918,1221601,"-","Uncharacterized protein yjcN precursor","FIG01433747","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1360","peg","scaffold1|size1664507_1222338_1222057",1222338,1222057,"-","FIG01233439: hypothetical protein","FIG01233437","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1361","peg","scaffold1|size1664507_1222333_1222455",1222333,1222455,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1362","peg","scaffold1|size1664507_1222622_1223722,scaffold1|size1664507_1223726_1223785",1222622,1223785,"+","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1363","peg","scaffold1|size1664507_1223772_1223894",1223772,1223894,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1364","peg","scaffold1|size1664507_1224809_1225468",1224809,1225468,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1365","peg","scaffold1|size1664507_1225740_1227602",1225740,1227602,"+","Putative toxin component near putative ESAT-related proteins, repetitive / Repetitive hypothetical protein near ESAT cluster, SA0282 homolog","FIG00149320","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1366","peg","scaffold1|size1664507_1227867_1227983",1227867,1227983,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1367","peg","scaffold1|size1664507_1228244_1228546",1228244,1228546,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1368","peg","scaffold1|size1664507_1230319_1229555",1230319,1229555,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1369","peg","scaffold1|size1664507_1230642_1230520",1230642,1230520,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1370","peg","scaffold1|size1664507_1230877_1231107",1230877,1231107,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1371","peg","scaffold1|size1664507_1231281_1231135",1231281,1231135,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1372","peg","scaffold1|size1664507_1231457_1232275",1231457,1232275,"+","SAM-dependent methyltransferases","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1373","peg","scaffold1|size1664507_1232997_1233518",1232997,1233518,"+","Phosphohydrolase (MutT/nudix family protein)","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1374","peg","scaffold1|size1664507_1233581_1233721",1233581,1233721,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1375","peg","scaffold1|size1664507_1234535_1233738",1234535,1233738,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1376","peg","scaffold1|size1664507_1235344_1234547",1235344,1234547,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1377","peg","scaffold1|size1664507_1235925_1235809",1235925,1235809,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1378","peg","scaffold1|size1664507_1236671_1235946",1236671,1235946,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1379","peg","scaffold1|size1664507_1237022_1238155",1237022,1238155,"+","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1380","peg","scaffold1|size1664507_1238145_1238264",1238145,1238264,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1381","peg","scaffold1|size1664507_1238468_1239475",1238468,1239475,"+","DNA-cytosine methyltransferase (EC 2.1.1.37)","NA","idu(1);DNA_repair,_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.1382","peg","scaffold1|size1664507_1239468_1240553",1239468,1240553,"+","ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD","NA","idu(1);DNA_Repair_Base_Excision idu(1);Nonhomologous_End-Joining_in_Bacteria idu(1);DNA_ligases idu(1);Bacillus_subtilis_scratch_-_gjo"]
["scaffold1|size1664507","fig|6666666.156949.peg.1383","peg","scaffold1|size1664507_1240600_1241277",1240600,1241277,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1384","peg","scaffold1|size1664507_1241736_1242134",1241736,1242134,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1385","peg","scaffold1|size1664507_1242121_1242537",1242121,1242537,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1386","peg","scaffold1|size1664507_1242562_1243212",1242562,1243212,"+","Phage protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1387","peg","scaffold1|size1664507_1243226_1243468",1243226,1243468,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1388","peg","scaffold1|size1664507_1243480_1244337",1243480,1244337,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1389","peg","scaffold1|size1664507_1244660_1245709",1244660,1245709,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1390","peg","scaffold1|size1664507_1246254_1246808",1246254,1246808,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1391","peg","scaffold1|size1664507_1246811_1247197",1246811,1247197,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1392","peg","scaffold1|size1664507_1247973_1248722",1247973,1248722,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1393","peg","scaffold1|size1664507_1248774_1249988",1248774,1249988,"+","RecA protein","NA","idu(1);DNA_repair_system_including_RecA,_MutS_and_a_hypothetical_protein idu(1);DNA_repair,_bacterial idu(1);DNA_repair,_bacterial_UmuCD_system idu(1);DNA-replication idu(1);DNA_repair,_bacterial_RecFOR_pathway idu(1);CBSS-257314.1.peg.676 idu(1);CBSS-469378.4.peg.430"]
["scaffold1|size1664507","fig|6666666.156949.peg.1394","peg","scaffold1|size1664507_1250016_1250192",1250016,1250192,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1395","peg","scaffold1|size1664507_1250205_1250387",1250205,1250387,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1396","peg","scaffold1|size1664507_1251893_1252924",1251893,1252924,"+","FIG01235713: hypothetical protein","FIG01235712","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1397","peg","scaffold1|size1664507_1252937_1253671",1252937,1253671,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1398","peg","scaffold1|size1664507_1253753_1254490",1253753,1254490,"+","Bacillus phage RNA polymerase sigma factor (SigF-like)","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1399","peg","scaffold1|size1664507_1254928_1255704",1254928,1255704,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1400","peg","scaffold1|size1664507_1255714_1256496",1255714,1256496,"+","Cell wall-binding protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1401","peg","scaffold1|size1664507_1256573_1256872",1256573,1256872,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1402","peg","scaffold1|size1664507_1257120_1256896",1257120,1256896,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1403","peg","scaffold1|size1664507_1257291_1257902",1257291,1257902,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1404","peg","scaffold1|size1664507_1257903_1258865",1257903,1258865,"+","RNA polymerase sigma factor RpoD","FIG00038814","idu(1);CBSS-349161.4.peg.2417 idu(1);Macromolecular_synthesis_operon idu(1);Flagellum idu(1);Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.1405","peg","scaffold1|size1664507_1258924_1259295",1258924,1259295,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1406","peg","scaffold1|size1664507_1259320_1259622",1259320,1259622,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1407","peg","scaffold1|size1664507_1260875_1259958",1260875,1259958,"-","Flagellin protein FlaA","FIG00000816","icw(1);Flagellum idu(1);Flagellum_in_Campylobacter"]
["scaffold1|size1664507","fig|6666666.156949.peg.1408","peg","scaffold1|size1664507_1261086_1260877",1261086,1260877,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1409","peg","scaffold1|size1664507_1262428_1261223",1262428,1261223,"-","N-acetylmuramoyl-L-alanine amidase AmiB precursor (EC 3.5.1.28)","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1410","peg","scaffold1|size1664507_1262752_1262444",1262752,1262444,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1411","peg","scaffold1|size1664507_1263227_1264084",1263227,1264084,"+","Site-specific recombinase XerD","NA","isu;Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1412","peg","scaffold1|size1664507_1268002_1264148",1268002,1264148,"-","Phage protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1413","peg","scaffold1|size1664507_1270891_1268045",1270891,1268045,"-","halomucin","FIG01888853","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1414","peg","scaffold1|size1664507_1271079_1270876",1271079,1270876,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1415","peg","scaffold1|size1664507_1271663_1271526",1271663,1271526,"-","FIG01249334: hypothetical protein","FIG01249332","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1416","peg","scaffold1|size1664507_1272541_1272095",1272541,1272095,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1417","peg","scaffold1|size1664507_1273386_1272655",1273386,1272655,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1418","peg","scaffold1|size1664507_1274522_1273398",1274522,1273398,"-","Protein containing cell adhesion domain","FIG01421429","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1419","peg","scaffold1|size1664507_1278167_1274535",1278167,1274535,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1420","peg","scaffold1|size1664507_1280137_1278248",1280137,1278248,"-","FIG01230707: hypothetical protein","FIG01230706","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1421","peg","scaffold1|size1664507_1282295_1280160",1282295,1280160,"-","FIG01242735: hypothetical protein","FIG01242733","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1422","peg","scaffold1|size1664507_1284101_1282416",1284101,1282416,"-","FIG01233489: hypothetical protein","FIG01233488","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1423","peg","scaffold1|size1664507_1285812_1284262",1285812,1284262,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1424","peg","scaffold1|size1664507_1288689_1286140",1288689,1286140,"-","FIG01242735: hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1425","peg","scaffold1|size1664507_1289938_1289156",1289938,1289156,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1426","peg","scaffold1|size1664507_1293514_1290026",1293514,1290026,"-","Membrane proteins related to metalloendopeptidases","NA","idu(2);CBSS-393121.3.peg.2760"]
["scaffold1|size1664507","fig|6666666.156949.peg.1427","peg","scaffold1|size1664507_1294599_1293526",1294599,1293526,"-","FIG01238534: hypothetical protein","FIG01238529","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1428","peg","scaffold1|size1664507_1295236_1294601",1295236,1294601,"-","FIG01247392: hypothetical protein","FIG01247391","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1429","peg","scaffold1|size1664507_1300575_1295278",1300575,1295278,"-","FIG01243852: hypothetical protein","FIG01243850","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1430","peg","scaffold1|size1664507_1300786_1300640",1300786,1300640,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1431","peg","scaffold1|size1664507_1301463_1300972",1301463,1300972,"-","FIG01242037: hypothetical protein","FIG01242034","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1432","peg","scaffold1|size1664507_1302714_1301623",1302714,1301623,"-","FIG01229074: hypothetical protein","FIG01229072","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1433","peg","scaffold1|size1664507_1303170_1302721",1303170,1302721,"-","FIG01234025: hypothetical protein","FIG01234023","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1434","peg","scaffold1|size1664507_1303792_1303175",1303792,1303175,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1435","peg","scaffold1|size1664507_1304420_1303797",1304420,1303797,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1436","peg","scaffold1|size1664507_1305342_1304878",1305342,1304878,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1437","peg","scaffold1|size1664507_1306453_1305440",1306453,1305440,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1438","peg","scaffold1|size1664507_1306870_1306469",1306870,1306469,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1439","peg","scaffold1|size1664507_1308321_1306885",1308321,1306885,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1440","peg","scaffold1|size1664507_1309860_1308400",1309860,1308400,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1441","peg","scaffold1|size1664507_1312352_1310658",1312352,1310658,"-","Phage protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1442","peg","scaffold1|size1664507_1313122_1312349",1313122,1312349,"-","Thymidine kinase (EC 2.7.1.21)","FIG00000655","idu(1);pyrimidine_conversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.1443","peg","scaffold1|size1664507_1313717_1313124",1313717,1313124,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1444","peg","scaffold1|size1664507_1313875_1313717",1313875,1313717,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1445","peg","scaffold1|size1664507_1314233_1314090",1314233,1314090,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1446","peg","scaffold1|size1664507_1314919_1317021",1314919,1317021,"+","Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)","FIG00001069","idu(1);Ribonucleotide_reduction"]
["scaffold1|size1664507","fig|6666666.156949.peg.1447","peg","scaffold1|size1664507_1317137_1318126",1317137,1318126,"+","Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)","FIG00000960","icw(1);Ribonucleotide_reduction"]
["scaffold1|size1664507","fig|6666666.156949.peg.1448","peg","scaffold1|size1664507_1318401_1318643",1318401,1318643,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1449","peg","scaffold1|size1664507_1318640_1319728",1318640,1319728,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1450","peg","scaffold1|size1664507_1320002_1319760",1320002,1319760,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1451","peg","scaffold1|size1664507_1321251_1320592",1321251,1320592,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1452","peg","scaffold1|size1664507_1321545_1321330",1321545,1321330,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1453","peg","scaffold1|size1664507_1322836_1322630",1322836,1322630,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1454","peg","scaffold1|size1664507_1323318_1322869",1323318,1322869,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1455","peg","scaffold1|size1664507_1324739_1323378",1324739,1323378,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1456","peg","scaffold1|size1664507_1325397_1325669",1325397,1325669,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1457","peg","scaffold1|size1664507_1325826_1326152",1325826,1326152,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1458","peg","scaffold1|size1664507_1326318_1327556",1326318,1327556,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1459","peg","scaffold1|size1664507_1327784_1328899",1327784,1328899,"+","Peptidase T (EC 3.4.11.4)","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1460","peg","scaffold1|size1664507_1330098_1330217",1330098,1330217,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1461","peg","scaffold1|size1664507_1330615_1330896",1330615,1330896,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1462","peg","scaffold1|size1664507_1331812_1332045",1331812,1332045,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1463","peg","scaffold1|size1664507_1332519_1332800",1332519,1332800,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1464","peg","scaffold1|size1664507_1333082_1333324",1333082,1333324,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1465","peg","scaffold1|size1664507_1333343_1333540",1333343,1333540,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1466","peg","scaffold1|size1664507_1334479_1336191",1334479,1336191,"+","COG0553: Superfamily II DNA/RNA helicases, SNF2 family","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1467","peg","scaffold1|size1664507_1336823_1337596",1336823,1337596,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1468","peg","scaffold1|size1664507_1337593_1337904",1337593,1337904,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1469","peg","scaffold1|size1664507_1338532_1338918",1338532,1338918,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1470","peg","scaffold1|size1664507_1339033_1340109",1339033,1340109,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1471","peg","scaffold1|size1664507_1340109_1340879",1340109,1340879,"+","FIG01227861: hypothetical protein","FIG01227860","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1472","peg","scaffold1|size1664507_1341108_1341572",1341108,1341572,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1473","peg","scaffold1|size1664507_1342138_1343427",1342138,1343427,"+","FIG01242600: hypothetical protein","FIG01242595","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1474","peg","scaffold1|size1664507_1343439_1344512",1343439,1344512,"+","DNA primase (EC 2.7.7.-)","FIG00019251","idu(1);CBSS-349161.4.peg.2417 idu(1);Macromolecular_synthesis_operon idu(1);DNA-replication"]
["scaffold1|size1664507","fig|6666666.156949.peg.1475","peg","scaffold1|size1664507_1344661_1345236",1344661,1345236,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1476","peg","scaffold1|size1664507_1345752_1346504",1345752,1346504,"+","FIG01249871: hypothetical protein","FIG01249869","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1477","peg","scaffold1|size1664507_1346588_1349173",1346588,1349173,"+","DNA polymerase I (EC 2.7.7.7)","FIG00000404","idu(1);DNA_Repair_Base_Excision icw(1);DNA-replication"]
["scaffold1|size1664507","fig|6666666.156949.peg.1478","peg","scaffold1|size1664507_1349285_1349662",1349285,1349662,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1479","peg","scaffold1|size1664507_1350210_1351376",1350210,1351376,"+","Integrase","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.9","rna","scaffold1|size1664507_1351662_1351591",1351662,1351591,"-","tRNA-Val-GAC","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1480","peg","scaffold1|size1664507_1351892_1353082",1351892,1353082,"+","DUF819 domain-containing protein","FIG01325574","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1481","peg","scaffold1|size1664507_1353152_1353697",1353152,1353697,"+","Ribosomal-protein-S5p-alanine acetyltransferase","FIG00000756","isu;Ribosome_biogenesis_bacterial isu;Ribosomal_protein_S5p_acylation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1482","peg","scaffold1|size1664507_1354865_1353729",1354865,1353729,"-","Cystathionine beta-lyase (EC 4.4.1.8)","FIG00755081","isu;L-Cystine_Uptake_and_Metabolism icw(2);Methionine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1483","peg","scaffold1|size1664507_1356015_1354894",1356015,1354894,"-","Cystathionine gamma-synthase (EC 2.5.1.48) @ O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)","NA","icw(2);L-Cystine_Uptake_and_Metabolism isu;Methionine_Biosynthesis icw(1);Methionine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1484","peg","scaffold1|size1664507_1356188_1356036",1356188,1356036,"-","Cystathionine gamma-synthase (EC 2.5.1.48)","FIG00000660","icw(2);L-Cystine_Uptake_and_Metabolism icw(1);Methionine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1485","peg","scaffold1|size1664507_1356371_1357093",1356371,1357093,"+","Putative acetyl esterase YjcH (EC 3.1.1.-)","FIG00002429","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1486","peg","scaffold1|size1664507_1357130_1357645",1357130,1357645,"+","2H phosphoesterase superfamily protein Bsu1186 (yjcG)","FIG00003557","isu;RNA_processing_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.1487","peg","scaffold1|size1664507_1357649_1358071",1357649,1358071,"+","GNAT family acetyltransferase YjcF","FIG00003802","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1488","peg","scaffold1|size1664507_1358398_1358144",1358398,1358144,"-","FIG01226358: hypothetical protein","FIG01226353","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1489","peg","scaffold1|size1664507_1358515_1360794",1358515,1360794,"+","putative ATP-dependent DNA helicase YjcD","FIG01304430","isu;DNA_repair,_bacterial_UvrD_and_related_helicases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1490","peg","scaffold1|size1664507_1361122_1360868",1361122,1360868,"-","FIG01228645: hypothetical protein","FIG01228644","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1491","peg","scaffold1|size1664507_1361404_1361255",1361404,1361255,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1492","peg","scaffold1|size1664507_1361692_1361486",1361692,1361486,"-","FIG01233980: hypothetical protein","FIG01233978","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1493","peg","scaffold1|size1664507_1361716_1361949",1361716,1361949,"+","FIG01228815: hypothetical protein","FIG01747726","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1494","peg","scaffold1|size1664507_1362330_1361974",1362330,1361974,"-","Integral membrane protein","FIG01956050","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1495","peg","scaffold1|size1664507_1362490_1362876",1362490,1362876,"+","Spore coat protein V","FIG00181848","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1496","peg","scaffold1|size1664507_1362917_1363246",1362917,1363246,"+","Spore coat protein W","FIG01333199","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1497","peg","scaffold1|size1664507_1363335_1363850",1363335,1363850,"+","Spore coat protein X","FIG00041163","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1498","peg","scaffold1|size1664507_1364001_1364489",1364001,1364489,"+","Spore coat protein Y","FIG00148776","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1499","peg","scaffold1|size1664507_1364617_1365063",1364617,1365063,"+","Spore coat protein Y","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1500","peg","scaffold1|size1664507_1365834_1365157",1365834,1365157,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1501","peg","scaffold1|size1664507_1366717_1365941",1366717,1365941,"-","Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)","FIG00000524","isu;Fatty_Acid_Biosynthesis_FASII"]
["scaffold1|size1664507","fig|6666666.156949.peg.1502","peg","scaffold1|size1664507_1367668_1366853",1367668,1366853,"-","Phosphomethylpyrimidine kinase (EC 2.7.4.7)","NA","isu;5-FCL-like_protein isu;Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1503","peg","scaffold1|size1664507_1368697_1367687",1368697,1367687,"-","Sulfur carrier protein adenylyltransferase ThiF","FIG00001002","icw(2);Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1504","peg","scaffold1|size1664507_1369458_1368694",1369458,1368694,"-","Thiazole biosynthesis protein ThiG","NA","icw(4);Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1505","peg","scaffold1|size1664507_1369664_1369461",1369664,1369461,"-","Sulfur carrier protein ThiS","FIG00058747","icw(6);Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1506","peg","scaffold1|size1664507_1370770_1369661",1370770,1369661,"-","Glycine oxidase ThiO (EC 1.4.3.19)","FIG00001017","icw(3);Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1507","peg","scaffold1|size1664507_1371371_1370754",1371371,1370754,"-","Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)","FIG00000407","icw(2);5-FCL-like_protein icw(5);Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1508","peg","scaffold1|size1664507_1372056_1371346",1372056,1371346,"-","Thiaminase II (EC 3.5.99.2)","NA","icw(1);5-FCL-like_protein icw(1);Thiamin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1509","peg","scaffold1|size1664507_1374149_1372305",1374149,1372305,"-","Na+/H+ antiporter","FIG00008246","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1510","peg","scaffold1|size1664507_1374384_1375118",1374384,1375118,"+","Diadenosine tetraphosphatase","FIG01348972","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1511","peg","scaffold1|size1664507_1376030_1375131",1376030,1375131,"-","Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type","FIG00014990","isu;Ribosome_biogenesis_bacterial isu;CBSS-222523.1.peg.1311 isu;RNA_pseudouridine_syntheses"]
["scaffold1|size1664507","fig|6666666.156949.peg.1512","peg","scaffold1|size1664507_1376845_1376045",1376845,1376045,"-","NAD kinase (EC 2.7.1.23)","FIG00000075","idu(1);NAD_and_NADP_cofactor_biosynthesis_global icw(2);CBSS-222523.1.peg.1311"]
["scaffold1|size1664507","fig|6666666.156949.peg.1513","peg","scaffold1|size1664507_1377502_1376864",1377502,1376864,"-","GTP pyrophosphokinase (EC 2.7.6.5)","FIG01969905","icw(3);CBSS-222523.1.peg.1311"]
["scaffold1|size1664507","fig|6666666.156949.peg.1514","peg","scaffold1|size1664507_1377896_1377528",1377896,1377528,"-","FIG01228403: hypothetical protein","FIG01228402","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1515","peg","scaffold1|size1664507_1378021_1378593",1378021,1378593,"+","Adenylate cyclase","NA","icw(1);CBSS-222523.1.peg.1311"]
["scaffold1|size1664507","fig|6666666.156949.peg.1516","peg","scaffold1|size1664507_1378608_1379342",1378608,1379342,"+","Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)","FIG00008294","idu(1);Murein_Hydrolases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1517","peg","scaffold1|size1664507_1379597_1379995",1379597,1379995,"+","Hemoglobin-like protein HbO","FIG00001245","isu;Bacterial_hemoglobins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1518","peg","scaffold1|size1664507_1379992_1380891",1379992,1380891,"+","YjbH-like, GTP pyrophosphokinase domain","FIG00002411","icw(4);CBSS-222523.1.peg.1311"]
["scaffold1|size1664507","fig|6666666.156949.peg.1519","peg","scaffold1|size1664507_1381205_1381372",1381205,1381372,"+","FIG01226944: hypothetical protein","FIG01226941","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1520","peg","scaffold1|size1664507_1383422_1381410",1383422,1381410,"-","Oligoendopeptidase F (EC 3.4.24.-)","FIG00628107","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1521","peg","scaffold1|size1664507_1384620_1383469",1384620,1383469,"-","Competence protein CoiA","FIG00002141","icw(1);Gram_Positive_Competence"]
["scaffold1|size1664507","fig|6666666.156949.peg.1522","peg","scaffold1|size1664507_1385436_1384780",1385436,1384780,"-","Negative regulator of genetic competence MecA","FIG00005813","idu(1);Gram_Positive_Competence"]
["scaffold1|size1664507","fig|6666666.156949.peg.1523","peg","scaffold1|size1664507_1385713_1386369",1385713,1386369,"+","membrane protein, putative","FIG00439698","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1524","peg","scaffold1|size1664507_1386807_1386412",1386807,1386412,"-","Regulatory protein spx","FIG00646655","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1525","peg","scaffold1|size1664507_1387566_1386988",1387566,1386988,"-","unknown","FIG01966475","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1526","peg","scaffold1|size1664507_1388911_1387730",1388911,1387730,"-","FIG01226653: hypothetical protein","FIG01226652","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1527","peg","scaffold1|size1664507_1388933_1389049",1388933,1389049,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1528","peg","scaffold1|size1664507_1389971_1389054",1389971,1389054,"-","Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)","FIG00018865","icw(3);ABC_transporter_oligopeptide_(TC_3.A.1.5.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1529","peg","scaffold1|size1664507_1391040_1389973",1391040,1389973,"-","Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)","FIG00945384","icw(2);ABC_transporter_oligopeptide_(TC_3.A.1.5.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1530","peg","scaffold1|size1664507_1391971_1391054",1391971,1391054,"-","Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)","FIG00455853","idu(1);ABC_transporter_oligopeptide_(TC_3.A.1.5.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1531","peg","scaffold1|size1664507_1392910_1391975",1392910,1391975,"-","Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)","FIG00945384","icw(2);ABC_transporter_oligopeptide_(TC_3.A.1.5.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1532","peg","scaffold1|size1664507_1394655_1393018",1394655,1393018,"-","Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)","FIG00432360","icw(6);ABC_transporter_oligopeptide_(TC_3.A.1.5.1) idu(2);Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes"]
["scaffold1|size1664507","fig|6666666.156949.peg.1533","peg","scaffold1|size1664507_1395354_1396391",1395354,1396391,"+","Tryptophanyl-tRNA synthetase (EC 6.1.1.2)","FIG00000055","isu;A_cluster_relating_to_Tryptophanyl-tRNA_synthetase isu;tRNA_aminoacylation,_Trp"]
["scaffold1|size1664507","fig|6666666.156949.peg.1534","peg","scaffold1|size1664507_1397178_1396426",1397178,1396426,"-","FIG01234419: hypothetical protein","FIG01225763","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1535","peg","scaffold1|size1664507_1398298_1397384",1398298,1397384,"-","Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)","FIG00455853","idu(1);ABC_transporter_oligopeptide_(TC_3.A.1.5.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1536","peg","scaffold1|size1664507_1399264_1398314",1399264,1398314,"-","Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)","FIG00945384","icw(1);ABC_transporter_oligopeptide_(TC_3.A.1.5.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1537","peg","scaffold1|size1664507_1400967_1399339",1400967,1399339,"-","Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)","FIG00432360","icw(4);ABC_transporter_oligopeptide_(TC_3.A.1.5.1) idu(2);Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes"]
["scaffold1|size1664507","fig|6666666.156949.peg.1538","peg","scaffold1|size1664507_1402044_1401055",1402044,1401055,"-","Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)","FIG00018865","icw(2);ABC_transporter_oligopeptide_(TC_3.A.1.5.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1539","peg","scaffold1|size1664507_1403027_1402041",1403027,1402041,"-","Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)","NA","icw(3);ABC_transporter_oligopeptide_(TC_3.A.1.5.1)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1540","peg","scaffold1|size1664507_1404004_1403219",1404004,1403219,"-","FIG01225411: hypothetical protein","FIG01225410","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1541","peg","scaffold1|size1664507_1405321_1404080",1405321,1404080,"-","3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)","FIG00002246","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1542","peg","scaffold1|size1664507_1406282_1405344",1406282,1405344,"-","3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)","FIG00015100","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1543","peg","scaffold1|size1664507_1406453_1406683",1406453,1406683,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1544","peg","scaffold1|size1664507_1406904_1406713",1406904,1406713,"-","Possible repressor of comG operon","FIG01225606","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1545","peg","scaffold1|size1664507_1407872_1406919",1407872,1406919,"-","positive regulator of comK","FIG00882218","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1546","peg","scaffold1|size1664507_1408519_1407962",1408519,1407962,"-","FIG01287439: hypothetical protein","FIG01227816","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1547","peg","scaffold1|size1664507_1408647_1408504",1408647,1408504,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1548","peg","scaffold1|size1664507_1409335_1408601",1409335,1408601,"-","HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)","FIG00002113","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1549","peg","scaffold1|size1664507_1409585_1409770",1409585,1409770,"+","Putative uncharacterized protein GBAA1178","FIG01226991","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1550","peg","scaffold1|size1664507_1409995_1409816",1409995,1409816,"-","FIG01235373: hypothetical protein","FIG01235372","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1551","peg","scaffold1|size1664507_1411040_1410081",1411040,1410081,"-","Ornithine carbamoyltransferase (EC 2.1.3.3)","FIG00000084","isu;Arginine_Biosynthesis_--_gjo isu;Arginine_Biosynthesis_extended isu;Arginine_and_Ornithine_Degradation isu;Arginine_Deiminase_Pathway"]
["scaffold1|size1664507","fig|6666666.156949.peg.1552","peg","scaffold1|size1664507_1414120_1411028",1414120,1411028,"-","Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)","FIG00000111","icw(1);Macromolecular_synthesis_operon icw(1);De_Novo_Pyrimidine_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1553","peg","scaffold1|size1664507_1415174_1414113",1415174,1414113,"-","Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)","FIG00000130","idu(1);Macromolecular_synthesis_operon idu(1);De_Novo_Pyrimidine_Synthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1554","peg","scaffold1|size1664507_1416402_1415245",1416402,1415245,"-","Acetylornithine aminotransferase (EC 2.6.1.11)","FIG00001168","icw(3);Arginine_Biosynthesis_--_gjo icw(3);Arginine_Biosynthesis_extended"]
["scaffold1|size1664507","fig|6666666.156949.peg.1555","peg","scaffold1|size1664507_1417175_1416399",1417175,1416399,"-","Acetylglutamate kinase (EC 2.7.2.8)","FIG00000383","icw(1);Arginine_Biosynthesis_--_gjo icw(1);Arginine_Biosynthesis_extended"]
["scaffold1|size1664507","fig|6666666.156949.peg.1556","peg","scaffold1|size1664507_1418410_1417190",1418410,1417190,"-","Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)","FIG00000630","isu;Arginine_Biosynthesis_--_gjo icw(1);Arginine_Biosynthesis_--_gjo isu;Arginine_Biosynthesis_extended icw(1);Arginine_Biosynthesis_extended"]
["scaffold1|size1664507","fig|6666666.156949.peg.1557","peg","scaffold1|size1664507_1419467_1418430",1419467,1418430,"-","N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)","FIG00000358","icw(2);Arginine_Biosynthesis_--_gjo icw(2);Arginine_Biosynthesis_extended"]
["scaffold1|size1664507","fig|6666666.156949.peg.1558","peg","scaffold1|size1664507_1420212_1419673",1420212,1419673,"-","FIG01239489: hypothetical protein","FIG01239487","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1559","peg","scaffold1|size1664507_1421642_1420212",1421642,1420212,"-","oxidoreductase, FAD-binding","FIG01339311","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1560","peg","scaffold1|size1664507_1421874_1421704",1421874,1421704,"-","FIG01246996: hypothetical protein","FIG01246994","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1561","peg","scaffold1|size1664507_1422247_1421939",1422247,1421939,"-","probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly","FIG00138514","isu;Scaffold_proteins_for_[4Fe-4S]_cluster_assembly_(MRP_family) isu;Iron-sulfur_cluster_assembly"]
["scaffold1|size1664507","fig|6666666.156949.peg.1562","peg","scaffold1|size1664507_1423078_1422311",1423078,1422311,"-","Putative hydrolase of the alpha/beta superfamily","FIG00627857","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1563","peg","scaffold1|size1664507_1423199_1424011",1423199,1424011,"+","FIG002540: Haloacid dehalogenase-like hydrolase","FIG01228392","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1564","peg","scaffold1|size1664507_1424268_1424465",1424268,1424465,"+","FIG01226075: hypothetical protein","FIG01226074","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1565","peg","scaffold1|size1664507_1424951_1424496",1424951,1424496,"-","intracellular proteinase inhibitor BsuPI","FIG01318880","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1566","peg","scaffold1|size1664507_1425812_1424970",1425812,1424970,"-","Arginine/ornithine antiporter ArcD","FIG00001166","idu(4);Arginine_and_Ornithine_Degradation idu(4);Arginine_Deiminase_Pathway idu(4);Polyamine_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1567","peg","scaffold1|size1664507_1425950_1426801",1425950,1426801,"+","DegV family protein","FIG01328543","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1568","peg","scaffold1|size1664507_1428407_1426848",1428407,1426848,"-","Zinc metalloproteinase precursor (EC 3.4.24.29) / aureolysin","FIG01960663","idu(1);Listeria_Pathogenicity_Island_LIPI-1_extended"]
["scaffold1|size1664507","fig|6666666.156949.peg.1569","peg","scaffold1|size1664507_1428892_1428599",1428892,1428599,"-","FIG01245765: hypothetical protein","FIG01245764","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1570","peg","scaffold1|size1664507_1429493_1428912",1429493,1428912,"-","FIG01233708: hypothetical protein","FIG01233707","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1571","peg","scaffold1|size1664507_1429837_1429490",1429837,1429490,"-","Transcriptional regulator, PadR family","FIG00002474","idu(3);CBSS-1352.1.peg.856"]
["scaffold1|size1664507","fig|6666666.156949.peg.1572","peg","scaffold1|size1664507_1430139_1429993",1430139,1429993,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1573","peg","scaffold1|size1664507_1430138_1430551",1430138,1430551,"+","FIG01231817: hypothetical protein","FIG01231815","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1574","peg","scaffold1|size1664507_1430536_1431465",1430536,1431465,"+","FIG01253646: hypothetical protein","FIG01740520","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1575","peg","scaffold1|size1664507_1431462_1432046",1431462,1432046,"+","FIG01237632: hypothetical protein","FIG01237630","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1576","peg","scaffold1|size1664507_1432947_1432099",1432947,1432099,"-","S1 RNA binding domain","FIG01304042","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1577","peg","scaffold1|size1664507_1433094_1433585",1433094,1433585,"+","FIG001943: hypothetical protein YajQ","FIG00001943","isu;Broadly_distributed_proteins_not_in_subsystems"]
["scaffold1|size1664507","fig|6666666.156949.peg.1578","peg","scaffold1|size1664507_1433899_1435737",1433899,1435737,"+","5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain","FIG00010489","isu;5-FCL-like_protein isu;One-carbon_metabolism_by_tetrahydropterines isu;Serine-glyoxylate_cycle isu;Methionine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1579","peg","scaffold1|size1664507_1435828_1436277",1435828,1436277,"+","acetyltransferase, GNAT family","FIG01315364","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1580","peg","scaffold1|size1664507_1436282_1437130",1436282,1437130,"+","FIG01230618: hypothetical protein","FIG01230617","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1581","peg","scaffold1|size1664507_1437242_1438510",1437242,1438510,"+","Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog","FIG00452872","isu;Multidrug_Resistance_Efflux_Pumps"]
["scaffold1|size1664507","fig|6666666.156949.peg.1582","peg","scaffold1|size1664507_1438519_1439634",1438519,1439634,"+","Putative mandelate racemase STM3833","FIG01045126","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1583","peg","scaffold1|size1664507_1439685_1440359",1439685,1440359,"+","membrane protein, putative","FIG00439698","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1584","peg","scaffold1|size1664507_1441162_1440404",1441162,1440404,"-","Phosphosulfolactate synthase (EC 4.4.1.19)","FIG00050404","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1585","peg","scaffold1|size1664507_1441845_1441159",1441845,1441159,"-","Probable 2-phosphosulfolactate phosphatase (EC 3.1.3.71)","FIG00528069","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1586","peg","scaffold1|size1664507_1442030_1442740",1442030,1442740,"+","Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10)","FIG01303877","icw(1);Cysteine_Biosynthesis icw(1);Inorganic_Sulfur_Assimilation icw(2);Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1587","peg","scaffold1|size1664507_1442853_1444022",1442853,1444022,"+","Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)","FIG01962692","icw(2);Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1588","peg","scaffold1|size1664507_1444019_1444618",1444019,1444618,"+","Adenylylsulfate kinase (EC 2.7.1.25)","FIG00000821","idu(1);O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter idu(1);Cysteine_Biosynthesis idu(1);Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1589","peg","scaffold1|size1664507_1445452_1444646",1445452,1444646,"-","Non-heme chloroperoxidase (EC 1.11.1.10)","FIG01225742","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1590","peg","scaffold1|size1664507_1445658_1446296",1445658,1446296,"+","FIG01231088: hypothetical protein","FIG01231086","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1591","peg","scaffold1|size1664507_1447752_1446304",1447752,1446304,"-","Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)","FIG00005520","idu(7);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(7);Threonine_and_Homoserine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1592","peg","scaffold1|size1664507_1447875_1448486",1447875,1448486,"+","Transporter, LysE family","FIG00731583","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1593","peg","scaffold1|size1664507_1448461_1449045",1448461,1449045,"+","DinB","FIG01239586","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1594","peg","scaffold1|size1664507_1450123_1449119",1450123,1449119,"-","Myo-inositol 2-dehydrogenase like (EC 1.1.1.18)","FIG01472288","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1595","peg","scaffold1|size1664507_1450305_1450144",1450305,1450144,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1596","peg","scaffold1|size1664507_1451346_1450333",1451346,1450333,"-","Predicted transcriptional regulator of the myo-inositol catabolic operon","FIG00002272","idu(1);Inositol_catabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1597","peg","scaffold1|size1664507_1452227_1451364",1452227,1451364,"-","Transcriptional regulator, AraC family","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1598","peg","scaffold1|size1664507_1452351_1453718",1452351,1453718,"+","Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps","FIG00000402","idu(1);Multidrug_Resistance_Efflux_Pumps"]
["scaffold1|size1664507","fig|6666666.156949.peg.1599","peg","scaffold1|size1664507_1454551_1453748",1454551,1453748,"-","Phytoene synthase (EC 2.5.1.32)","FIG00000928","isu;CBSS-320388.3.peg.3759 isu;Proteorhodopsin"]
["scaffold1|size1664507","fig|6666666.156949.peg.1600","peg","scaffold1|size1664507_1454805_1455284",1454805,1455284,"+","FIG01225809: hypothetical protein","FIG01225808","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1601","peg","scaffold1|size1664507_1457257_1455413",1457257,1455413,"-","Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) YisO","FIG01304642","isu;Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1602","peg","scaffold1|size1664507_1457427_1457984",1457427,1457984,"+","Uncharacterized protein yisN, only in Bacillus","FIG01311554","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1603","peg","scaffold1|size1664507_1460717_1458015",1460717,1458015,"-","FIG01241072: hypothetical protein","FIG01241071","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1604","peg","scaffold1|size1664507_1461241_1460885",1461241,1460885,"-","Uncharacterized protein UPF0344","FIG00002562","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1605","peg","scaffold1|size1664507_1462262_1461357",1462262,1461357,"-","Fumarylacetoacetate hydrolase family protein","FIG00007658","idu(1);Gentisate_degradation idu(1);Salicylate_and_gentisate_catabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1606","peg","scaffold1|size1664507_1462417_1463340",1462417,1463340,"+","Inner spore coat protein H","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1607","peg","scaffold1|size1664507_1463486_1463656",1463486,1463656,"+","Spo0E-like putative sporulation regulatory protein in grePA-PF operon","FIG00026841","icw(4);Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.1608","peg","scaffold1|size1664507_1463990_1463826",1463990,1463826,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1609","peg","scaffold1|size1664507_1464079_1464300",1464079,1464300,"+","Protein GerPA, required for proper assembly of spore coat, mutations lead to super-dormant spore","FIG00012480","icw(2);Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.1610","peg","scaffold1|size1664507_1464315_1464548",1464315,1464548,"+","Protein GerPB, required for proper assembly of spore coat, mutations lead to super-dormant spore","FIG00012305","icw(5);Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.1611","peg","scaffold1|size1664507_1464572_1465189",1464572,1465189,"+","Protein GerPC, required for proper assembly of spore coat, mutations lead to super-dormant spore","FIG00013245","icw(3);Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.1612","peg","scaffold1|size1664507_1465186_1465362",1465186,1465362,"+","Protein GerPD, required for proper assembly of spore coat, mutations lead to super-dormant spore","FIG00012360","icw(1);Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.1613","peg","scaffold1|size1664507_1465422_1465763",1465422,1465763,"+","Protein GerPE, required for proper assembly of spore coat, mutations lead to super-dormant spore","FIG00012103","isu;Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.1614","peg","scaffold1|size1664507_1465795_1466013",1465795,1466013,"+","Protein GerPF, required for proper assembly of spore coat, mutations lead to super-dormant spore","FIG00012189","icw(6);Spore_germination"]
["scaffold1|size1664507","fig|6666666.156949.peg.1615","peg","scaffold1|size1664507_1466352_1466050",1466352,1466050,"-","FIG01230218: hypothetical protein","FIG01230216","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1616","peg","scaffold1|size1664507_1469758_1466366",1469758,1466366,"-","Exonuclease SbcC","FIG01304601","icw(1);DNA_repair,_bacterial isu;Rad50-Mre11_DNA_repair_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1617","peg","scaffold1|size1664507_1470930_1469755",1470930,1469755,"-","Exonuclease SbcD","FIG00000782","isu;DNA_repair,_bacterial icw(1);Rad50-Mre11_DNA_repair_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1618","peg","scaffold1|size1664507_1474700_1471002",1474700,1471002,"-","ATP-dependent nuclease, subunit A","FIG00001547","icw(1);ATP-dependent_Nuclease"]
["scaffold1|size1664507","fig|6666666.156949.peg.1619","peg","scaffold1|size1664507_1478187_1474687",1478187,1474687,"-","ATP-dependent nuclease, subunit B","FIG00052730","isu;ATP-dependent_Nuclease"]
["scaffold1|size1664507","fig|6666666.156949.peg.1620","peg","scaffold1|size1664507_1478371_1478808",1478371,1478808,"+","FIG01225181: hypothetical protein","FIG01225180","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1621","peg","scaffold1|size1664507_1478927_1479253",1478927,1479253,"+","Ferredoxin","FIG00001676","idu(2);Soluble_cytochromes_and_functionally_related_electron_carriers idu(2);Inorganic_Sulfur_Assimilation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1622","peg","scaffold1|size1664507_1481010_1479283",1481010,1479283,"-","Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)","FIG00432360","idu(2);ABC_transporter_oligopeptide_(TC_3.A.1.5.1) idu(2);Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes"]
["scaffold1|size1664507","fig|6666666.156949.peg.1623","peg","scaffold1|size1664507_1481124_1482329",1481124,1482329,"+","YhjO","FIG01238903","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1624","peg","scaffold1|size1664507_1482436_1483590",1482436,1483590,"+","FIG01228137: hypothetical protein","FIG01481576","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1625","peg","scaffold1|size1664507_1484793_1483804",1484793,1483804,"-","NTD biosynthesis operon regulator NtdR","FIG00020962","icw(3);Neotrehalosadiamine_(NTD)_Biosynthesis_Operon"]
["scaffold1|size1664507","fig|6666666.156949.peg.1626","peg","scaffold1|size1664507_1484897_1486222",1484897,1486222,"+","NTD biosynthesis operon protein NtdA","FIG00025419","icw(1);Neotrehalosadiamine_(NTD)_Biosynthesis_Operon"]
["scaffold1|size1664507","fig|6666666.156949.peg.1627","peg","scaffold1|size1664507_1486194_1487042",1486194,1487042,"+","NTD biosynthesis operon putative hydrolase NtdB (EC 3.-.-.-)","FIG00022022","isu;Neotrehalosadiamine_(NTD)_Biosynthesis_Operon"]
["scaffold1|size1664507","fig|6666666.156949.peg.1628","peg","scaffold1|size1664507_1487056_1488108",1487056,1488108,"+","NTD biosynthesis operon putative oxidoreductase NtdC (EC 1.-.-.-)","FIG00023165","icw(2);Neotrehalosadiamine_(NTD)_Biosynthesis_Operon"]
["scaffold1|size1664507","fig|6666666.156949.peg.1629","peg","scaffold1|size1664507_1488180_1489400",1488180,1489400,"+","Glucose/mannose:H+ symporter GlcP","FIG00435857","isu;Trehalose_Uptake_and_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1630","peg","scaffold1|size1664507_1490065_1490262",1490065,1490262,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1631","peg","scaffold1|size1664507_1490817_1490290",1490817,1490290,"-","YhjH","FIG01234437","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1632","peg","scaffold1|size1664507_1492393_1490894",1492393,1490894,"-","FAD-binding monooxygenase, PheA/TfdB family","FIG01312101","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1633","peg","scaffold1|size1664507_1493080_1492577,scaffold1|size1664507_1492573_1492505",1493080,1492505,"-","Signal peptidase I (EC 3.4.21.89)","FIG00000015","idu(3);Signal_peptidase idu(3);CBSS-176299.4.peg.1292"]
["scaffold1|size1664507","fig|6666666.156949.peg.1634","peg","scaffold1|size1664507_1493705_1493082",1493705,1493082,"-","Alkaline phosphatase like protein","FIG00006211","idu(1);Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1635","peg","scaffold1|size1664507_1493857_1494228",1493857,1494228,"+","YhjD","FIG01232784","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1636","peg","scaffold1|size1664507_1494427_1494627",1494427,1494627,"+","FIG01225797: hypothetical protein","FIG01225796","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1637","peg","scaffold1|size1664507_1494624_1496093",1494624,1496093,"+","Acetate permease ActP (cation/acetate symporter)","FIG01347644","idu(1);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold1|size1664507","fig|6666666.156949.peg.1638","peg","scaffold1|size1664507_1496406_1496137",1496406,1496137,"-","YhjA","FIG01241649","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1639","peg","scaffold1|size1664507_1496495_1496623",1496495,1496623,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1640","peg","scaffold1|size1664507_1496623_1497522",1496623,1497522,"+","FIG00553873: hypothetical protein","FIG00553873","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1641","peg","scaffold1|size1664507_1498147_1497569",1498147,1497569,"-","Competence transcription factor","FIG01226330","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1642","peg","scaffold1|size1664507_1498440_1498673",1498440,1498673,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1643","peg","scaffold1|size1664507_1499558_1498701",1499558,1498701,"-","oxidoreductase, short chain dehydrogenase/reductase family","FIG01345757","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1644","peg","scaffold1|size1664507_1499670_1501199",1499670,1501199,"+","Probable oxidoreductase, with Rieske iron-sulfur protein 2Fe-2S subunit","FIG01226847","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1645","peg","scaffold1|size1664507_1501254_1502636",1501254,1502636,"+","methyl-accepting chemotaxis protein","FIG01251342","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1646","peg","scaffold1|size1664507_1502772_1503332",1502772,1503332,"+","Substrate-specific component BioY of biotin ECF transporter","FIG00012067","idu(1);ECF_class_transporters idu(1);Biotin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1647","peg","scaffold1|size1664507_1503339_1504778",1503339,1504778,"+","O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)","FIG00000860","idu(2);Menaquinone_and_Phylloquinone_Biosynthesis idu(2);Menaquinone_and_Phylloquinone_Biosynthesis_--_gjo"]
["scaffold1|size1664507","fig|6666666.156949.peg.1648","peg","scaffold1|size1664507_1504775_1505869",1504775,1505869,"+","3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)","FIG00000004","idu(1);CBSS-246196.1.peg.364 idu(1);n-Phenylalkanoic_acid_degradation idu(1);Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO idu(1);Polyhydroxybutyrate_metabolism idu(1);Polyhydroxybutyrate_metabolism idu(1);Isoleucine_degradation idu(1);Fatty_acid_metabolism_cluster icw(1);Biotin_biosynthesis idu(1);Isoprenoid_Biosynthesis idu(1);Butyrate_metabolism_cluster idu(1);Serine-glyoxylate_cycle idu(1);Serine-glyoxylate_cycle idu(1);Lysine_fermentation idu(1);Butanol_Biosynthesis idu(1);Acetyl-CoA_fermentation_to_Butyrate"]
["scaffold1|size1664507","fig|6666666.156949.peg.1649","peg","scaffold1|size1664507_1505940_1506521",1505940,1506521,"+","Predicted broad substrate specificity phosphatase","FIG00011548","isu;Phosphoglycerate_mutase_protein_family"]
["scaffold1|size1664507","fig|6666666.156949.peg.1650","peg","scaffold1|size1664507_1507524_1506553",1507524,1506553,"-","Heme ABC type transporter HtsABC, heme-binding protein","FIG00019092","idu(1);Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"]
["scaffold1|size1664507","fig|6666666.156949.peg.1651","peg","scaffold1|size1664507_1507721_1507602",1507721,1507602,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1652","peg","scaffold1|size1664507_1508733_1507741",1508733,1507741,"-","YhdH, a putative quinone oxidoreductase","NA","isu;Quinone_oxidoreductase_family"]
["scaffold1|size1664507","fig|6666666.156949.peg.1653","peg","scaffold1|size1664507_1509254_1508805",1509254,1508805,"-","FIG01232193: hypothetical protein","FIG01232192","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1654","peg","scaffold1|size1664507_1509440_1509288",1509440,1509288,"-","FIG01230435: hypothetical protein","FIG01230432","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1655","peg","scaffold1|size1664507_1509688_1510833",1509688,1510833,"+","serine alkaline protease (subtilisin E)( EC:3.4.21.62 )","FIG01230769","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1656","peg","scaffold1|size1664507_1512152_1510872",1512152,1510872,"-","peptidase, M48 family","FIG01332365","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1657","peg","scaffold1|size1664507_1512283_1512696",1512283,1512696,"+","FIG01237402: hypothetical protein","FIG01237396","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1658","peg","scaffold1|size1664507_1514324_1512735",1514324,1512735,"-","O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)","FIG00000860","idu(2);Menaquinone_and_Phylloquinone_Biosynthesis idu(2);Menaquinone_and_Phylloquinone_Biosynthesis_--_gjo"]
["scaffold1|size1664507","fig|6666666.156949.peg.1659","peg","scaffold1|size1664507_1515038_1514394",1515038,1514394,"-","Conserved protein YhfK","FIG01232065","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1660","peg","scaffold1|size1664507_1516098_1515103",1516098,1515103,"-","Lipoate-protein ligase A","FIG00000465","idu(1);Lipoic_acid_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1661","peg","scaffold1|size1664507_1516845_1516111",1516845,1516111,"-","Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein","FIG01955808","isu;Beta-lactamase"]
["scaffold1|size1664507","fig|6666666.156949.peg.1662","peg","scaffold1|size1664507_1516847_1517137",1516847,1517137,"+","unknown","FIG01964702","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1663","peg","scaffold1|size1664507_1517408_1518697",1517408,1518697,"+","Glutamate-aspartate carrier protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1664","peg","scaffold1|size1664507_1519141_1518734",1519141,1518734,"-","FIG01241191: hypothetical protein","FIG01241186","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1665","peg","scaffold1|size1664507_1520194_1519154",1520194,1519154,"-","Deblocking aminopeptidase (EC 3.4.11.-)","FIG00001530","isu;Protein_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1666","peg","scaffold1|size1664507_1520579_1520328",1520579,1520328,"-","FIG01241681: hypothetical protein","FIG01241679","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1667","peg","scaffold1|size1664507_1521382_1520606",1521382,1520606,"-","FIG01235610: hypothetical protein","FIG01235608","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1668","peg","scaffold1|size1664507_1521511_1522488",1521511,1522488,"+","3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)","FIG00015100","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1669","peg","scaffold1|size1664507_1524858_1522531",1524858,1522531,"-","FIG01232059: hypothetical protein","FIG01232058","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1670","peg","scaffold1|size1664507_1525504_1524929",1525504,1524929,"-","TetR family transcriptional regulator BA1080","FIG01965792","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1671","peg","scaffold1|size1664507_1527063_1525651",1527063,1525651,"-","Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)","FIG00068302","icw(1);Heme_and_Siroheme_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1672","peg","scaffold1|size1664507_1528010_1527078",1528010,1527078,"-","Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)","FIG00000345","isu;Heme_and_Siroheme_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1673","peg","scaffold1|size1664507_1529143_1528082",1529143,1528082,"-","Uroporphyrinogen III decarboxylase (EC 4.1.1.37)","FIG00000428","icw(2);Heme_and_Siroheme_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1674","peg","scaffold1|size1664507_1531409_1529265",1531409,1529265,"-","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)","FIG00000011","idu(2);Peptidoglycan_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1675","peg","scaffold1|size1664507_1531531_1532031",1531531,1532031,"+","Uncharacterized protein, homolog of B.subtilis yhgC","FIG00002659","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1676","peg","scaffold1|size1664507_1532040_1532300",1532040,1532300,"+","FIG01237082: hypothetical protein","FIG01237077","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1677","peg","scaffold1|size1664507_1532269_1532394",1532269,1532394,"+","FIG01237082: hypothetical protein","FIG01237077","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1678","peg","scaffold1|size1664507_1532460_1533851",1532460,1533851,"+","unknown","FIG01964634","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1679","peg","scaffold1|size1664507_1533863_1535113",1533863,1535113,"+","Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A","FIG00001384","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1680","peg","scaffold1|size1664507_1535841_1535131",1535841,1535131,"-","EcsC protein","FIG00012359","isu;EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1681","peg","scaffold1|size1664507_1537087_1535861",1537087,1535861,"-","ABC transporter, permease protein EscB","FIG00009036","icw(3);EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1682","peg","scaffold1|size1664507_1537823_1537080",1537823,1537080,"-","ABC transporter, ATP-binding protein EcsA","FIG00005968","icw(1);EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1683","peg","scaffold1|size1664507_1538310_1538747",1538310,1538747,"+","Histidine triad (HIT) nucleotide-binding protein, similarity with At5g48545 and yeast YDL125C (HNT1)","FIG00229695","isu;CBSS-176279.3.peg.1262"]
["scaffold1|size1664507","fig|6666666.156949.peg.1684","peg","scaffold1|size1664507_1538894_1539973",1538894,1539973,"+","Phosphoserine aminotransferase (EC 2.6.1.52)","FIG00000445","isu;Pyridoxin_(Vitamin_B6)_Biosynthesis isu;Glycine_and_Serine_Utilization isu;Serine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1685","peg","scaffold1|size1664507_1540098_1540616",1540098,1540616,"+","Substrate-specific component TrpP of tryptophan ECF transporter","FIG00077188","isu;ECF_class_transporters"]
["scaffold1|size1664507","fig|6666666.156949.peg.1686","peg","scaffold1|size1664507_1540881_1540690",1540881,1540690,"-","FIG01235971: hypothetical protein","FIG01235970","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1687","peg","scaffold1|size1664507_1541010_1541366",1541010,1541366,"+","Hypothetical protein SAV1839","FIG00009245","icw(2);CBSS-176279.3.peg.1262 icw(2);EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1688","peg","scaffold1|size1664507_1541544_1542155",1541544,1542155,"+","Protease production regulatory protein Hpr (ScoC)","FIG00013364","icw(1);EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1689","peg","scaffold1|size1664507_1542484_1542152",1542484,1542152,"-","FIG01226172: hypothetical protein","FIG01226171","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1690","peg","scaffold1|size1664507_1542701_1543219",1542701,1543219,"+","Hypothetical protein SAV1840","FIG00009870","icw(1);CBSS-176279.3.peg.1262"]
["scaffold1|size1664507","fig|6666666.156949.peg.1691","peg","scaffold1|size1664507_1543345_1543509",1543345,1543509,"+","FIG01227217: hypothetical protein","FIG01227216","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1692","peg","scaffold1|size1664507_1544019_1544894",1544019,1544894,"+","Foldase protein PrsA precursor (EC 5.2.1.8) @ Foldase clustered with pyrimidine conversion","FIG00148852","icw(2);CBSS-176279.3.peg.1262 idu(1);Peptidyl-prolyl_cis-trans_isomerase icw(2);EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1693","peg","scaffold1|size1664507_1545147_1544935",1545147,1544935,"-","FIG01233745: hypothetical protein","FIG01233744","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1694","peg","scaffold1|size1664507_1546216_1545272",1546216,1545272,"-","3'->5' exoribonuclease Bsu YhaM","FIG01114325","isu;Ribonucleases_in_Bacillus icw(1);Rad50-Mre11_DNA_repair_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1695","peg","scaffold1|size1664507_1549052_1546290",1549052,1546290,"-","DNA double-strand break repair Rad50 ATPase","FIG00688894","isu;Rad50-Mre11_DNA_repair_cluster"]
["scaffold1|size1664507","fig|6666666.156949.peg.1696","peg","scaffold1|size1664507_1550412_1549186",1550412,1549186,"-","DNA repair exonuclease family protein YhaO","FIG01303866","isu;DNA_repair,_bacterial"]
["scaffold1|size1664507","fig|6666666.156949.peg.1697","peg","scaffold1|size1664507_1551778_1550519",1551778,1550519,"-","ABC transporter, permease protein (putative)","FIG01438392","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1698","peg","scaffold1|size1664507_1552667_1551771",1552667,1551771,"-","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1699","peg","scaffold1|size1664507_1552794_1552979",1552794,1552979,"+","FIG01230527: hypothetical protein","FIG01230526","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1700","peg","scaffold1|size1664507_1553767_1553003,scaffold1|size1664507_1552999_1552970",1553767,1552970,"-","Enoyl-CoA hydratase (EC 4.2.1.17)","FIG00033206","idu(3);n-Phenylalkanoic_acid_degradation idu(3);Polyhydroxybutyrate_metabolism idu(3);Isoleucine_degradation idu(3);Fatty_acid_metabolism_cluster idu(3);Butyrate_metabolism_cluster idu(3);Lysine_fermentation idu(3);Butanol_Biosynthesis idu(3);Acetyl-CoA_fermentation_to_Butyrate idu(3);Valine_degradation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1701","peg","scaffold1|size1664507_1553954_1554271",1553954,1554271,"+","Uncharacterized protein yhaS","FIG01233087","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1702","peg","scaffold1|size1664507_1554335_1554832",1554335,1554832,"+","trkA domain protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1703","peg","scaffold1|size1664507_1554839_1556056",1554839,1556056,"+","Na+/H+ antiporter","FIG00008246","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1704","peg","scaffold1|size1664507_1557606_1557592,scaffold1|size1664507_1557588_1556074",1557606,1556074,"-","Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)","FIG00007556","isu;Heme_and_Siroheme_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1705","peg","scaffold1|size1664507_1558557_1557691",1558557,1557691,"-","Hydrolase (HAD superfamily)","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1706","peg","scaffold1|size1664507_1559043_1560116",1559043,1560116,"+","YhaZ","FIG01232705","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1707","peg","scaffold1|size1664507_1560513_1560160",1560513,1560160,"-","Hypothetical protein SAV1845","FIG00742253","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1708","peg","scaffold1|size1664507_1561739_1560606",1561739,1560606,"-","Hypothetical protein SAV1846","FIG01225405","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1709","peg","scaffold1|size1664507_1562006_1563097",1562006,1563097,"+","FIG01225774: hypothetical protein","FIG01225773","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1710","peg","scaffold1|size1664507_1563087_1564448",1563087,1564448,"+","FIG01227862: hypothetical protein","FIG01227861","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1711","peg","scaffold1|size1664507_1564607_1564816",1564607,1564816,"+","FIG01231959: hypothetical protein","FIG01231954","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1712","peg","scaffold1|size1664507_1565026_1565226,scaffold1|size1664507_1565230_1565250",1565026,1565250,"+","Small acid-soluble spore protein, alpha/beta family, SASP_1","NA","idu(1);Small_acid-soluble_spore_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1713","peg","scaffold1|size1664507_1565334_1565459",1565334,1565459,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1714","peg","scaffold1|size1664507_1565498_1566118",1565498,1566118,"+","Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)","FIG00000983","idu(1);Glutaredoxins idu(1);Flavohaemoglobin idu(1);Bacterial_hemoglobins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1715","peg","scaffold1|size1664507_1568189_1566168",1568189,1566168,"-","Lipid A export ATP-binding/permease protein MsbA","FIG00017059","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1716","peg","scaffold1|size1664507_1569943_1568186",1569943,1568186,"-","Lipid A export ATP-binding/permease protein MsbA","FIG00017059","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1717","peg","scaffold1|size1664507_1570311_1570063",1570311,1570063,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1718","peg","scaffold1|size1664507_1570388_1570888",1570388,1570888,"+","Stress response protein nhaX","FIG01233676","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1719","peg","scaffold1|size1664507_1571015_1572376",1571015,1572376,"+","Na+/H+ antiporter NhaC","FIG01365272","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1720","peg","scaffold1|size1664507_1573267_1572419",1573267,1572419,"-","D-alanine aminotransferase (EC 2.6.1.21)","FIG00001292","isu;Pyruvate_Alanine_Serine_Interconversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.1721","peg","scaffold1|size1664507_1573552_1574400",1573552,1574400,"+","Peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-)","FIG00009450","idu(2);Polysaccharide_deacetylases"]
["scaffold1|size1664507","fig|6666666.156949.peg.1722","peg","scaffold1|size1664507_1575167_1574424",1575167,1574424,"-","NAD-dependent protein deacetylase of SIR2 family","FIG00008490","isu;Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate isu;Redox-dependent_regulation_of_nucleus_processes"]
["scaffold1|size1664507","fig|6666666.156949.peg.1723","peg","scaffold1|size1664507_1576352_1575237",1576352,1575237,"-","FIG01230350: hypothetical protein","FIG01230346","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1724","peg","scaffold1|size1664507_1576644_1576501",1576644,1576501,"-","Uncharacterized protein yhdX","FIG01240479","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1725","peg","scaffold1|size1664507_1576842_1577573",1576842,1577573,"+","Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)","FIG00002239","idu(1);Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1726","peg","scaffold1|size1664507_1577560_1577955",1577560,1577955,"+","Protein crcB homolog 2","FIG01121065","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1727","peg","scaffold1|size1664507_1577952_1578308",1577952,1578308,"+","camphor resistance protein CrcB","FIG01229035","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1728","peg","scaffold1|size1664507_1579707_1578322",1579707,1578322,"-","Magnesium and cobalt efflux protein CorC","FIG00042627","icw(1);Magnesium_transport icw(1);Glycyl-tRNA_synthetase_containing_cluster icw(1);CBSS-56780.10.peg.1536"]
["scaffold1|size1664507","fig|6666666.156949.peg.1729","peg","scaffold1|size1664507_1581215_1580034",1581215,1580034,"-","Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aspartate aminotransferase (EC 2.6.1.1)","NA","idu(7);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis isu;Phenylalanine_and_Tyrosine_Branches_from_Chorismate idu(7);Threonine_and_Homoserine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1730","peg","scaffold1|size1664507_1581258_1581803",1581258,1581803,"+","HTH-type transcriptional regulator cueR","FIG00948320","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1731","peg","scaffold1|size1664507_1581873_1583198",1581873,1583198,"+","Magnesium and cobalt efflux protein CorC","FIG00042627","icw(1);Magnesium_transport icw(1);Glycyl-tRNA_synthetase_containing_cluster icw(1);CBSS-56780.10.peg.1536"]
["scaffold1|size1664507","fig|6666666.156949.peg.1732","peg","scaffold1|size1664507_1583866_1583267",1583866,1583267,"-","1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)","FIG00005243","isu;Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.1733","peg","scaffold1|size1664507_1584996_1584001",1584996,1584001,"-","putative aldo/keto reductase","FIG01241582","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1734","peg","scaffold1|size1664507_1585193_1585684",1585193,1585684,"+","RNA polymerase sigma-70 factor","FIG01303902","idu(2);CBSS-316057.3.peg.1308 idu(2);Transcription_initiation,_bacterial_sigma_factors"]
["scaffold1|size1664507","fig|6666666.156949.peg.1735","peg","scaffold1|size1664507_1585677_1586750",1585677,1586750,"+","Sigma-M negative effector","FIG01312573","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1736","peg","scaffold1|size1664507_1586738_1587028",1586738,1587028,"+","YhdK","FIG01228831","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1737","peg","scaffold1|size1664507_1587487_1587059",1587487,1587059,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1738","peg","scaffold1|size1664507_1587597_1589006",1587597,1589006,"+","Predicted transcriptional regulator of pyridoxine metabolism","FIG00008736","idu(1);Pyridoxin_(Vitamin_B6)_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1739","peg","scaffold1|size1664507_1590396_1589041",1590396,1589041,"-","sodium-dependent transporter","FIG01338355","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1740","peg","scaffold1|size1664507_1591912_1590515",1591912,1590515,"-","Amino acid transporters","FIG01316294","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1741","peg","scaffold1|size1664507_1593031_1592162",1593031,1592162,"-","oxidoreductase, short chain dehydrogenase/reductase family","FIG01345757","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1742","peg","scaffold1|size1664507_1594205_1593105",1594205,1593105,"-","Citrate synthase (si) (EC 2.3.3.1)","FIG00130344","idu(2);TCA_Cycle idu(2);Glyoxylate_bypass idu(2);Serine-glyoxylate_cycle"]
["scaffold1|size1664507","fig|6666666.156949.peg.1743","peg","scaffold1|size1664507_1594314_1595189",1594314,1595189,"+","negative regulation of the citrate synthase I gene (citA)","FIG01470536","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1744","peg","scaffold1|size1664507_1596263_1595259",1596263,1595259,"-","Gamma-D-glutamyl-meso-diaminopimelate peptidase (EC 3.4.19.11)","FIG00181748","idu(2);Omega_peptidases_(EC_3.4.19.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1745","peg","scaffold1|size1664507_1596801_1598177",1596801,1598177,"+","Alkaline phosphatase (EC 3.1.3.1)","FIG00000766","idu(1);Phosphate_metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1746","peg","scaffold1|size1664507_1599613_1598207",1599613,1598207,"-","Stage V sporulation protein involved in spore cortex synthesis (SpoVR)","FIG01970587","isu;Sporulation_gene_orphans"]
["scaffold1|size1664507","fig|6666666.156949.peg.1747","peg","scaffold1|size1664507_1599776_1601302",1599776,1601302,"+","FIG01234102: hypothetical protein","FIG01234101","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1748","peg","scaffold1|size1664507_1601409_1601849",1601409,1601849,"+","Nitrite-sensitive transcriptional repressor NsrR","FIG00000872","isu;Oxidative_stress isu;Rrf2_family_transcriptional_regulators isu;Nitrosative_stress"]
["scaffold1|size1664507","fig|6666666.156949.peg.1749","peg","scaffold1|size1664507_1602002_1603462",1602002,1603462,"+","Gamma-D-glutamyl-meso-diaminopimelate peptidase (EC 3.4.19.11)","FIG00181748","idu(2);Omega_peptidases_(EC_3.4.19.-)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1750","peg","scaffold1|size1664507_1603827_1603504",1603827,1603504,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1751","peg","scaffold1|size1664507_1604028_1604270",1604028,1604270,"+","FIG01225983: hypothetical protein","FIG01225982","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1752","peg","scaffold1|size1664507_1604809_1604285",1604809,1604285,"-","Azoreductase","FIG01243841","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1753","peg","scaffold1|size1664507_1605453_1604806",1605453,1604806,"-","DNA-binding response regulator","FIG01031438","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1754","peg","scaffold1|size1664507_1606589_1605450",1606589,1605450,"-","Nitrate/nitrite sensor protein (EC 2.7.3.-)","NA","isu;Nitrate_and_nitrite_ammonification"]
["scaffold1|size1664507","fig|6666666.156949.peg.1755","peg","scaffold1|size1664507_1608483_1606738",1608483,1606738,"-","Phosphomannomutase (EC 5.4.2.8)","FIG00001022","isu;Mannose_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1756","peg","scaffold1|size1664507_1610282_1608615",1610282,1608615,"-","Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)","FIG00043723","isu;Respiratory_dehydrogenases_1 icw(1);Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization icw(1);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.1757","peg","scaffold1|size1664507_1611913_1610423",1611913,1610423,"-","Glycerol kinase (EC 2.7.1.30)","FIG00075702","isu;Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.1758","peg","scaffold1|size1664507_1612756_1611932",1612756,1611932,"-","Glycerol uptake facilitator protein","NA","isu;Osmoregulation icw(2);Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization isu;Glycerol_fermentation_to_1,3-propanediol"]
["scaffold1|size1664507","fig|6666666.156949.peg.1759","peg","scaffold1|size1664507_1613513_1613289,scaffold1|size1664507_1613285_1612935",1613513,1612935,"-","Glycerol-3-phosphate responsive antiterminator (mRNA-binding)","NA","isu;Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1760","peg","scaffold1|size1664507_1614878_1613541",1614878,1613541,"-","Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)","FIG00012547","idu(2);Biotin_biosynthesis_Experimental idu(2);Biotin_biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1761","peg","scaffold1|size1664507_1615088_1614921",1615088,1614921,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1762","peg","scaffold1|size1664507_1616852_1615311",1616852,1615311,"-","Aliphatic amidase AmiE (EC 3.5.1.4)","FIG00554419","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1763","peg","scaffold1|size1664507_1617530_1616868",1617530,1616868,"-","hydrolase, haloacid dehalogenase-like family","FIG00672005","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1764","peg","scaffold1|size1664507_1618080_1617658",1618080,1617658,"-","FIG01225757: hypothetical protein","FIG01225756","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1765","peg","scaffold1|size1664507_1618612_1618217",1618612,1618217,"-","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1766","peg","scaffold1|size1664507_1618723_1619631",1618723,1619631,"+","Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type","FIG00001743","isu;Ribosome_biogenesis_bacterial isu;RNA_pseudouridine_syntheses"]
["scaffold1|size1664507","fig|6666666.156949.peg.1767","peg","scaffold1|size1664507_1620257_1619661",1620257,1619661,"-","FIG01233477: hypothetical protein","FIG01233476","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1768","peg","scaffold1|size1664507_1623844_1620254",1623844,1620254,"-","5'-nucleotidase (EC 3.1.3.5)","FIG00003394","idu(1);Purine_conversions idu(1);pyrimidine_conversions"]
["scaffold1|size1664507","fig|6666666.156949.peg.1769","peg","scaffold1|size1664507_1625486_1624578",1625486,1624578,"-","FIG01234098: hypothetical protein","FIG01234097","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1770","peg","scaffold1|size1664507_1626242_1625667",1626242,1625667,"-","Lipoprotein yhcN precursor","FIG01369415","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1771","peg","scaffold1|size1664507_1626392_1626838",1626392,1626838,"+","FIG01247185: hypothetical protein","FIG01247182","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1772","peg","scaffold1|size1664507_1627037_1626855",1627037,1626855,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1773","peg","scaffold1|size1664507_1627230_1627547",1627230,1627547,"+","Transcriptional regulator, PadR family","FIG00002474","idu(3);CBSS-1352.1.peg.856"]
["scaffold1|size1664507","fig|6666666.156949.peg.1774","peg","scaffold1|size1664507_1627549_1628103",1627549,1628103,"+","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1775","peg","scaffold1|size1664507_1629792_1628401",1629792,1628401,"-","L-cystine uptake protein TcyP","FIG00003381","isu;L-Cystine_Uptake_and_Metabolism"]
["scaffold1|size1664507","fig|6666666.156949.peg.1776","peg","scaffold1|size1664507_1629964_1631043",1629964,1631043,"+","GGDEF domain protein","FIG00450572","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1777","peg","scaffold1|size1664507_1631876_1631046",1631876,1631046,"-","Methionine ABC transporter substrate-binding protein","FIG00047509","idu(1);Methionine_Degradation idu(1);Staphylococcal_pathogenicity_islands_SaPI idu(1);Methionine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1778","peg","scaffold1|size1664507_1632312_1632515",1632312,1632515,"+","Cold shock protein CspD","FIG01304073","idu(1);Cold_shock,_CspA_family_of_proteins"]
["scaffold1|size1664507","fig|6666666.156949.peg.1779","peg","scaffold1|size1664507_1633548_1632607",1633548,1632607,"-","putative membrane protein","FIG00092051","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1780","peg","scaffold1|size1664507_1634458_1633541",1634458,1633541,"-","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1781","peg","scaffold1|size1664507_1635173_1634475",1635173,1634475,"-","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1782","peg","scaffold1|size1664507_1635540_1635175",1635540,1635175,"-","Transcriptional regulator, GntR family","FIG00621925","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1783","peg","scaffold1|size1664507_1636304_1635543",1636304,1635543,"-","Uncharacterized protein yhcE","FIG01236423","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1784","peg","scaffold1|size1664507_1636464_1636309",1636464,1636309,"-","Uncharacterized protein yhcD","FIG01400317","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1785","peg","scaffold1|size1664507_1636838_1636464",1636838,1636464,"-","FIG01232075: hypothetical protein","FIG01232074","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1786","peg","scaffold1|size1664507_1637381_1636851",1637381,1636851,"-","FIG01233049: hypothetical protein","FIG01233047","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1787","peg","scaffold1|size1664507_1639002_1637404",1639002,1637404,"-","Membrane component of multidrug resistance system","FIG00007749","icw(1);Multidrug_Resistance,_2-protein_version_Found_in_Gram-positive_bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.1788","peg","scaffold1|size1664507_1639708_1639043",1639708,1639043,"-","Multidrug resistance protein [function not yet clear]","FIG00004668","isu;Multidrug_Resistance,_2-protein_version_Found_in_Gram-positive_bacteria"]
["scaffold1|size1664507","fig|6666666.156949.peg.1789","peg","scaffold1|size1664507_1640208_1639744",1640208,1639744,"-","YhbI","FIG01230331","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1790","peg","scaffold1|size1664507_1641546_1640368",1641546,1640368,"-","UPF0229 protein YeaH","FIG01304092","isu;CBSS-188.1.peg.6720 isu;Unknown_carbohydrate_utilization_(_cluster_Ydj_)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1791","peg","scaffold1|size1664507_1643621_1641726",1643621,1641726,"-","Serine protein kinase (prkA protein), P-loop containing","FIG00052904","icw(1);CBSS-188.1.peg.6720 icw(1);Unknown_carbohydrate_utilization_(_cluster_Ydj_)"]
["scaffold1|size1664507","fig|6666666.156949.peg.1792","peg","scaffold1|size1664507_1643905_1643762",1643905,1643762,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1793","peg","scaffold1|size1664507_1644678_1643971",1644678,1643971,"-","FIG01236752: hypothetical protein","FIG01236749","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1794","peg","scaffold1|size1664507_1645403_1644690",1645403,1644690,"-","FIG01236946: hypothetical protein","FIG01236943","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1795","peg","scaffold1|size1664507_1646035_1645394",1646035,1645394,"-","FIG01231699: hypothetical protein","FIG01231698","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1796","peg","scaffold1|size1664507_1646634_1646161",1646634,1646161,"-","tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)","FIG00001105","isu;RNA_methylation"]
["scaffold1|size1664507","fig|6666666.156949.peg.1797","peg","scaffold1|size1664507_1647598_1646681",1647598,1646681,"-","FIG01231642: hypothetical protein","FIG01226784","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1798","peg","scaffold1|size1664507_1648843_1647683",1648843,1647683,"-","Epoxyqueuosine (oQ) reductase QueG","FIG00000517","isu;Scaffold_proteins_for_[4Fe-4S]_cluster_assembly_(MRP_family) isu;Queuosine-Archaeosine_Biosynthesis"]
["scaffold1|size1664507","fig|6666666.156949.peg.1799","peg","scaffold1|size1664507_1648926_1649549",1648926,1649549,"+","FIG01227611: hypothetical protein","FIG01227610","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.10","rna","scaffold1|size1664507_1649713_1649643",1649713,1649643,"-","tRNA-Gly-TCC","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1800","peg","scaffold1|size1664507_1649904_1650107",1649904,1650107,"+","HigA protein (antitoxin to HigB)","FIG00010902","idu(1);Toxin-antitoxin_replicon_stabilization_systems"]
["scaffold1|size1664507","fig|6666666.156949.peg.1801","peg","scaffold1|size1664507_1650109_1650582",1650109,1650582,"+","unknown","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1802","peg","scaffold1|size1664507_1650869_1650600",1650869,1650600,"-","SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent","FIG00000066","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1803","peg","scaffold1|size1664507_1651625_1650981",1651625,1650981,"-","Uncharacterized protein ygaN","FIG01229298","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1804","peg","scaffold1|size1664507_1652752_1651622",1652752,1651622,"-","Alkanesulfonate monooxygenase (EC 1.14.14.5)","FIG00113730","icw(4);Alkanesulfonate_assimilation icw(4);Alkanesulfonates_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1805","peg","scaffold1|size1664507_1653605_1652775",1653605,1652775,"-","Alkanesulfonates transport system permease protein","FIG00138354","icw(1);Alkanesulfonate_assimilation icw(1);Alkanesulfonates_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1806","peg","scaffold1|size1664507_1654600_1653602",1654600,1653602,"-","Alkanesulfonates-binding protein","FIG00001221","isu;Alkanesulfonate_assimilation isu;Alkanesulfonates_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1807","peg","scaffold1|size1664507_1655385_1654618",1655385,1654618,"-","Alkanesulfonates ABC transporter ATP-binding protein","FIG01304729","icw(3);Alkanesulfonate_assimilation icw(3);Alkanesulfonates_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1808","peg","scaffold1|size1664507_1655513_1655388",1655513,1655388,"-","Alkanesulfonates ABC transporter ATP-binding protein","FIG01304729","icw(3);Alkanesulfonate_assimilation icw(3);Alkanesulfonates_Utilization"]
["scaffold1|size1664507","fig|6666666.156949.peg.1809","peg","scaffold1|size1664507_1655792_1657243",1655792,1657243,"+","Catalase (EC 1.11.1.6)","FIG00000313","idu(4);Oxidative_stress idu(4);Protection_from_Reactive_Oxygen_Species"]
["scaffold1|size1664507","fig|6666666.156949.peg.1810","peg","scaffold1|size1664507_1657467_1657270",1657467,1657270,"-","transcriptional regulator","FIG00629921","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1811","peg","scaffold1|size1664507_1657783_1657950",1657783,1657950,"+","FAD-dependent oxidase","FIG01249914","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1812","peg","scaffold1|size1664507_1659760_1657988",1659760,1657988,"-","Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17)","FIG01958823","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1813","peg","scaffold1|size1664507_1660765_1660070",1660765,1660070,"-","Peptidase E (EC 3.4.11.2)","FIG01312414","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1814","peg","scaffold1|size1664507_1660915_1661076",1660915,1661076,"+","FIG01245438: hypothetical protein","FIG01519030","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1815","peg","scaffold1|size1664507_1661364_1661161",1661364,1661161,"-","FIG01233035: hypothetical protein","FIG01233034","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1816","peg","scaffold1|size1664507_1661507_1661391",1661507,1661391,"-","hypothetical protein","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.peg.1817","peg","scaffold1|size1664507_1661506_1662282",1661506,1662282,"+","sporulation-control gene","FIG01440239","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.11","rna","scaffold1|size1664507_1662442_1662361",1662442,1662361,"-","tRNA-Leu-CAA","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.12","rna","scaffold1|size1664507_1662795_1662710",1662795,1662710,"-","tRNA-Leu-TAA","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.13","rna","scaffold1|size1664507_1662873_1662803",1662873,1662803,"-","tRNA-Cys-GCA","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.14","rna","scaffold1|size1664507_1662953_1662882",1662953,1662882,"-","tRNA-Gly-GCC","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.15","rna","scaffold1|size1664507_1663048_1662977",1663048,1662977,"-","tRNA-Gly-GCC","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.16","rna","scaffold1|size1664507_1663169_1663098",1663169,1663098,"-","tRNA-Gln-TTG","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.17","rna","scaffold1|size1664507_1663254_1663182",1663254,1663182,"-","tRNA-His-GTG","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.18","rna","scaffold1|size1664507_1663352_1663282",1663352,1663282,"-","tRNA-Trp-CCA","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.19","rna","scaffold1|size1664507_1663442_1663361",1663442,1663361,"-","tRNA-Tyr-GTA","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.20","rna","scaffold1|size1664507_1663537_1663465",1663537,1663465,"-","tRNA-Thr-TGT","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.21","rna","scaffold1|size1664507_1663618_1663546",1663618,1663546,"-","tRNA-Phe-GAA","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.22","rna","scaffold1|size1664507_1663707_1663634",1663707,1663634,"-","tRNA-Asp-GTC","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.23","rna","scaffold1|size1664507_1663795_1663722",1663795,1663722,"-","tRNA-Met-CAT","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.24","rna","scaffold1|size1664507_1663880_1663808",1663880,1663808,"-","tRNA-Val-TAC","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.25","rna","scaffold1|size1664507_1663961_1663890",1663961,1663890,"-","tRNA-Glu-TTC","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.26","rna","scaffold1|size1664507_1664087_1663999",1664087,1663999,"-","tRNA-Pseudo-GGA","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.27","rna","scaffold1|size1664507_1664167_1664096",1664167,1664096,"-","tRNA-Asn-GTT","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.28","rna","scaffold1|size1664507_1664292_1664177",1664292,1664177,"-","5S RNA","NA","NA"]
["scaffold1|size1664507","fig|6666666.156949.rna.29","rna","scaffold1|size1664507_1664507_1664405",1664507,1664405,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold206|size638","fig|6666666.156949.peg.1818","peg","scaffold206|size638_193_8",193,8,"-","hypothetical protein","NA","NA"]
["scaffold20|size2610","fig|6666666.156949.peg.1819","peg","scaffold20|size2610_526_1365",526,1365,"+","hypothetical protein","NA","NA"]
["scaffold20|size2610","fig|6666666.156949.peg.1820","peg","scaffold20|size2610_1389_2237",1389,2237,"+","hypothetical protein","NA","NA"]
["scaffold211|size634","fig|6666666.156949.peg.1821","peg","scaffold211|size634_382_522",382,522,"+","LSU ribosomal protein L20p","FIG00000216","idu(1);Ribosome_LSU_bacterial idu(1);Mycobacterium_virulence_operon_involved_in_protein_synthesis_(LSU_ribosomal_proteins)"]
["scaffold215|size632","fig|6666666.156949.peg.1822","peg","scaffold215|size632_87_266",87,266,"+","hypothetical protein","NA","NA"]
["scaffold216|size632","fig|6666666.156949.peg.1823","peg","scaffold216|size632_593_39",593,39,"-","hypothetical protein","NA","NA"]
["scaffold217|size1232","fig|6666666.156949.rna.30","rna","scaffold217|size1232_6_121",6,121,"+","5S RNA","NA","NA"]
["scaffold217|size1232","fig|6666666.156949.rna.31","rna","scaffold217|size1232_167_238",167,238,"+","tRNA-Asn-GTT","NA","NA"]
["scaffold217|size1232","fig|6666666.156949.rna.32","rna","scaffold217|size1232_244_316",244,316,"+","tRNA-Thr-GGT","NA","NA"]
["scaffold217|size1232","fig|6666666.156949.rna.33","rna","scaffold217|size1232_377_448",377,448,"+","tRNA-Gly-GCC","NA","NA"]
["scaffold217|size1232","fig|6666666.156949.rna.34","rna","scaffold217|size1232_483_556",483,556,"+","tRNA-Arg-ACG","NA","NA"]
["scaffold217|size1232","fig|6666666.156949.rna.35","rna","scaffold217|size1232_603_676",603,676,"+","tRNA-Arg-ACG","NA","NA"]
["scaffold217|size1232","fig|6666666.156949.rna.36","rna","scaffold217|size1232_707_780",707,780,"+","tRNA-Pro-TGG","NA","NA"]
["scaffold217|size1232","fig|6666666.156949.rna.37","rna","scaffold217|size1232_792_864",792,864,"+","tRNA-Ala-TGC","NA","NA"]
["scaffold217|size1232","fig|6666666.156949.rna.38","rna","scaffold217|size1232_1038_1232",1038,1232,"+","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold21|size2487","fig|6666666.156949.peg.1824","peg","scaffold21|size2487_1435_1623",1435,1623,"+","hypothetical protein","NA","NA"]
["scaffold21|size2487","fig|6666666.156949.peg.1825","peg","scaffold21|size2487_2043_2162",2043,2162,"+","hypothetical protein","NA","NA"]
["scaffold21|size2487","fig|6666666.156949.peg.1826","peg","scaffold21|size2487_2484_2200",2484,2200,"-","hypothetical protein","NA","NA"]
["scaffold221|size629","fig|6666666.156949.peg.1827","peg","scaffold221|size629_390_190",390,190,"-","hypothetical protein","NA","NA"]
["scaffold223|size627","fig|6666666.156949.peg.1828","peg","scaffold223|size627_521_174",521,174,"-","probable chemotaxis protein","NA","NA"]
["scaffold225|size625","fig|6666666.156949.peg.1829","peg","scaffold225|size625_496_317",496,317,"-","hypothetical protein","NA","NA"]
["scaffold226|size623","fig|6666666.156949.rna.39","rna","scaffold226|size623_268_195",268,195,"-","tRNA-Trp-CCA","NA","NA"]
["scaffold226|size623","fig|6666666.156949.rna.40","rna","scaffold226|size623_506_433",506,433,"-","tRNA-Pro-TGG","NA","NA"]
["scaffold227|size622","fig|6666666.156949.peg.1830","peg","scaffold227|size622_613_77",613,77,"-","Membrane protein","NA","NA"]
["scaffold228|size622","fig|6666666.156949.peg.1831","peg","scaffold228|size622_333_464",333,464,"+","LSU ribosomal protein L22p (L17e), chloroplast","FIG01302639","NA"]
["scaffold229|size621","fig|6666666.156949.peg.1832","peg","scaffold229|size621_207_581",207,581,"+","FIG00820627: hypothetical protein","FIG00448797","NA"]
["scaffold22|size2356","fig|6666666.156949.peg.1833","peg","scaffold22|size2356_2171_675",2171,675,"-","hypothetical protein","NA","NA"]
["scaffold230|size619","fig|6666666.156949.peg.1834","peg","scaffold230|size619_138_263",138,263,"+","hypothetical protein","NA","NA"]
["scaffold234|size617","fig|6666666.156949.rna.41","rna","scaffold234|size617_391_462",391,462,"+","tRNA-Thr-GGT","NA","NA"]
["scaffold238|size615","fig|6666666.156949.peg.1835","peg","scaffold238|size615_22_531",22,531,"+","Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)","FIG00002914","idu(1);Bacterial_Cell_Division idu(1);CBSS-393121.3.peg.2760"]
["scaffold23|size2316","fig|6666666.156949.peg.1836","peg","scaffold23|size2316_129_893",129,893,"+","hypothetical protein","NA","NA"]
["scaffold23|size2316","fig|6666666.156949.peg.1837","peg","scaffold23|size2316_909_2225",909,2225,"+","hypothetical protein","NA","NA"]
["scaffold248|size606","fig|6666666.156949.peg.1838","peg","scaffold248|size606_402_557",402,557,"+","hypothetical protein","NA","NA"]
["scaffold24|size2290","fig|6666666.156949.peg.1839","peg","scaffold24|size2290_380_775",380,775,"+","hypothetical protein","NA","NA"]
["scaffold24|size2290","fig|6666666.156949.peg.1840","peg","scaffold24|size2290_925_1086",925,1086,"+","hypothetical protein","NA","NA"]
["scaffold24|size2290","fig|6666666.156949.peg.1841","peg","scaffold24|size2290_1099_2223",1099,2223,"+","Phage tail fiber protein","FIG00003520","isu;Phage_tail_fiber_proteins"]
["scaffold252|size603","fig|6666666.156949.peg.1842","peg","scaffold252|size603_130_11",130,11,"-","hypothetical protein","NA","NA"]
["scaffold257|size600","fig|6666666.156949.peg.1843","peg","scaffold257|size600_464_240",464,240,"-","Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1)","NA","NA"]
["scaffold261|size598","fig|6666666.156949.rna.42","rna","scaffold261|size598_110_30",110,30,"-","tRNA-Pseudo-CAA","NA","NA"]
["scaffold26|size2120","fig|6666666.156949.peg.1844","peg","scaffold26|size2120_1797_1651",1797,1651,"-","hypothetical protein","NA","NA"]
["scaffold27|size2088","fig|6666666.156949.peg.1845","peg","scaffold27|size2088_2054_63",2054,63,"-","hypothetical protein","NA","NA"]
["scaffold280|size591","fig|6666666.156949.peg.1846","peg","scaffold280|size591_106_237",106,237,"+","hypothetical protein","NA","NA"]
["scaffold284|size587","fig|6666666.156949.peg.1847","peg","scaffold284|size587_350_505",350,505,"+","hypothetical protein","NA","NA"]
["scaffold28|size1893","fig|6666666.156949.rna.43","rna","scaffold28|size1893_1086_1006",1086,1006,"-","tRNA-Leu-CAA","NA","NA"]
["scaffold292|size582","fig|6666666.156949.peg.1848","peg","scaffold292|size582_466_320",466,320,"-","hypothetical protein","NA","NA"]
["scaffold293|size582","fig|6666666.156949.peg.1849","peg","scaffold293|size582_448_179",448,179,"-","Enoyl-CoA hydratase (EC 4.2.1.17)","FIG00033206","idu(3);n-Phenylalkanoic_acid_degradation idu(3);Polyhydroxybutyrate_metabolism idu(3);Isoleucine_degradation idu(3);Fatty_acid_metabolism_cluster idu(3);Butyrate_metabolism_cluster idu(3);Lysine_fermentation idu(3);Butanol_Biosynthesis idu(3);Acetyl-CoA_fermentation_to_Butyrate idu(3);Valine_degradation"]
["scaffold29|size1841","fig|6666666.156949.peg.1850","peg","scaffold29|size1841_114_1220",114,1220,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.rna.44","rna","scaffold2|size1077242_78_1",78,1,"-","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1851","peg","scaffold2|size1077242_2894_429",2894,429,"-","DNA gyrase subunit A (EC 5.99.1.3)","FIG00000080","icw(1);DNA_gyrase_subunits icw(1);Cell_Division_Subsystem_including_YidCD icw(1);DNA_topoisomerases,_Type_II,_ATP-dependent icw(1);DNA_replication_cluster_1 icw(1);Resistance_to_fluoroquinolones"]
["scaffold2|size1077242","fig|6666666.156949.peg.1852","peg","scaffold2|size1077242_2995_3108",2995,3108,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1853","peg","scaffold2|size1077242_5021_3105",5021,3105,"-","DNA gyrase subunit B (EC 5.99.1.3)","FIG00028203","isu;DNA_gyrase_subunits isu;Cell_Division_Subsystem_including_YidCD isu;DNA_topoisomerases,_Type_II,_ATP-dependent isu;DNA_replication_cluster_1 isu;Resistance_to_fluoroquinolones"]
["scaffold2|size1077242","fig|6666666.156949.peg.1854","peg","scaffold2|size1077242_5321_5076",5321,5076,"-","OrfX","FIG00514959","icw(4);DNA_replication_cluster_1"]
["scaffold2|size1077242","fig|6666666.156949.peg.1855","peg","scaffold2|size1077242_6451_5339",6451,5339,"-","DNA recombination and repair protein RecF","FIG00000412","icw(4);Cell_Division_Subsystem_including_YidCD idu(1);DNA_repair,_bacterial_RecFOR_pathway icw(6);DNA_replication_cluster_1 icw(1);Hypothetical_Coupled_to_RecF"]
["scaffold2|size1077242","fig|6666666.156949.peg.1856","peg","scaffold2|size1077242_6682_6467",6682,6467,"-","FIG002958: hypothetical protein","FIG00002958","icw(2);DNA_replication_cluster_1 isu;Hypothetical_Coupled_to_RecF"]
["scaffold2|size1077242","fig|6666666.156949.peg.1857","peg","scaffold2|size1077242_7949_6813",7949,6813,"-","DNA polymerase III beta subunit (EC 2.7.7.7)","FIG00066425","icw(4);Cell_Division_Subsystem_including_YidCD icw(1);DNA-replication icw(2);DNA_replication_cluster_1"]
["scaffold2|size1077242","fig|6666666.156949.peg.1858","peg","scaffold2|size1077242_9479_8139",9479,8139,"-","Chromosomal replication initiator protein DnaA","FIG00000441","icw(2);Cell_Division_Subsystem_including_YidCD isu;DNA-replication icw(4);DNA_replication_cluster_1"]
["scaffold2|size1077242","fig|6666666.156949.peg.1859","peg","scaffold2|size1077242_10392_10742",10392,10742,"+","Ribonuclease P protein component (EC 3.1.26.5)","FIG00092649","isu;RNA_modification_cluster isu;Cell_Division_Subsystem_including_YidCD isu;tRNA_processing"]
["scaffold2|size1077242","fig|6666666.156949.peg.1860","peg","scaffold2|size1077242_10890_11672",10890,11672,"+","Inner membrane protein translocase component YidC, short form OxaI-like","FIG00130900","icw(2);RNA_modification_cluster icw(7);Cell_Division_Subsystem_including_YidCD icw(1);Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_a_Jag_Protein_and_YidC_and_YidD"]
["scaffold2|size1077242","fig|6666666.156949.peg.1861","peg","scaffold2|size1077242_11669_12295",11669,12295,"+","RNA-binding protein Jag","FIG00001656","icw(5);Cell_Division_Subsystem_including_YidCD isu;Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_a_Jag_Protein_and_YidC_and_YidD"]
["scaffold2|size1077242","fig|6666666.156949.peg.1862","peg","scaffold2|size1077242_12606_13985",12606,13985,"+","GTPase and tRNA-U34 5-formylation enzyme TrmE","FIG00000279","icw(1);RNA_modification_cluster icw(1);tRNA_modification_Bacteria icw(4);Cell_Division_Subsystem_including_YidCD isu;Universal_GTPases isu;RNA_modification_and_chromosome_partitioning_cluster isu;mnm5U34_biosynthesis_bacteria"]
["scaffold2|size1077242","fig|6666666.156949.peg.1863","peg","scaffold2|size1077242_14006_15892",14006,15892,"+","tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA","FIG00000576","isu;tRNA_modification_Bacteria icw(1);Cell_Division_Subsystem_including_YidCD icw(1);RNA_modification_and_chromosome_partitioning_cluster icw(1);mnm5U34_biosynthesis_bacteria"]
["scaffold2|size1077242","fig|6666666.156949.peg.1864","peg","scaffold2|size1077242_15906_16625",15906,16625,"+","rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB","FIG00000521","isu;RNA_methylation icw(5);Cell_Division_Subsystem_including_YidCD icw(2);RNA_modification_and_chromosome_partitioning_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.1865","peg","scaffold2|size1077242_16747_17598",16747,17598,"+","Chromosome (plasmid) partitioning protein ParB","FIG00021843","icw(2);Cell_Division_Subsystem_including_YidCD icw(1);Bacterial_Cytoskeleton icw(1);Plasmid_replication icw(4);RNA_modification_and_chromosome_partitioning_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.1866","peg","scaffold2|size1077242_18089_17649",18089,17649,"-","FIG01227200: hypothetical protein","FIG01227199","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1867","peg","scaffold2|size1077242_18337_19098",18337,19098,"+","Chromosome (plasmid) partitioning protein ParA","FIG00006461","isu;Bacterial_Cell_Division isu;Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster icw(4);Cell_Division_Subsystem_including_YidCD icw(2);Bacterial_Cytoskeleton icw(2);Plasmid_replication icw(4);RNA_modification_and_chromosome_partitioning_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.1868","peg","scaffold2|size1077242_19091_19939",19091,19939,"+","Chromosome (plasmid) partitioning protein ParB","FIG00021843","icw(2);Cell_Division_Subsystem_including_YidCD icw(1);Bacterial_Cytoskeleton icw(1);Plasmid_replication icw(3);RNA_modification_and_chromosome_partitioning_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.1869","peg","scaffold2|size1077242_20595_19978",20595,19978,"-","Spore protease GPR related protein","FIG00645492","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1870","peg","scaffold2|size1077242_21074_22072",21074,22072,"+","FIG01230813: hypothetical protein","FIG01230812","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1871","peg","scaffold2|size1077242_22166_22372",22166,22372,"+","FIG001891: protein involved in chromosome partitioning","FIG01226301","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1872","peg","scaffold2|size1077242_22423_24426",22423,24426,"+","Anaerobic dehydrogenases, typically selenocysteine-containing","FIG00041382","idu(1);Anaerobic_respiratory_reductases"]
["scaffold2|size1077242","fig|6666666.156949.peg.1873","peg","scaffold2|size1077242_24553_25653",24553,25653,"+","GTP-binding and nucleic acid-binding protein YchF","FIG00049915","isu;Universal_GTPases"]
["scaffold2|size1077242","fig|6666666.156949.peg.1874","peg","scaffold2|size1077242_25764_26051",25764,26051,"+","SSU ribosomal protein S6p","FIG00000170","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1875","peg","scaffold2|size1077242_26092_26610",26092,26610,"+","Single-stranded DNA-binding protein","FIG00077620","idu(2);DNA_repair,_bacterial idu(2);DNA_repair,_bacterial_RecFOR_pathway idu(2);pVir_Plasmid_of_Campylobacter"]
["scaffold2|size1077242","fig|6666666.156949.peg.1876","peg","scaffold2|size1077242_26958_27716",26958,27716,"+","Exodeoxyribonuclease III (EC 3.1.11.2)","FIG00000065","icw(1);DNA_repair,_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.1877","peg","scaffold2|size1077242_27775_28710",27775,28710,"+","Ribose operon repressor","FIG00024226","idu(1);D-ribose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.1878","peg","scaffold2|size1077242_28766_29146",28766,29146,"+","Possible glyoxylase family protein (Lactoylglutathione lyase) (EC 4.4.1.5)","FIG01347028","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1879","peg","scaffold2|size1077242_29164_29718",29164,29718,"+","Maltose O-acetyltransferase (EC 2.3.1.79)","FIG00001636","isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.1880","peg","scaffold2|size1077242_31107_29752",31107,29752,"-","Niacin transporter NiaP","FIG00009989","idu(1);NAD_and_NADP_cofactor_biosynthesis_global idu(1);Niacin-Choline_transport_and_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1881","peg","scaffold2|size1077242_31334_32233",31334,32233,"+","FIG01227687: hypothetical protein","FIG01227686","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1882","peg","scaffold2|size1077242_34299_32230",34299,32230,"-","Thymidylate kinase (EC 2.7.4.9)","FIG00000175","idu(1);pyrimidine_conversions idu(1);CBSS-393133.3.peg.2787"]
["scaffold2|size1077242","fig|6666666.156949.peg.1883","peg","scaffold2|size1077242_35288_34371",35288,34371,"-","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","idu(11);Queuosine-Archaeosine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.1884","peg","scaffold2|size1077242_35521_35285",35521,35285,"-","Uncharacterized HTH-type transcriptional regulator yyaN","FIG01230249","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1885","peg","scaffold2|size1077242_36041_36241",36041,36241,"+","Streptothricin acetyltransferase, Streptomyces lavendulae type","FIG00003590","icw(1);Streptothricin_resistance"]
["scaffold2|size1077242","fig|6666666.156949.peg.1886","peg","scaffold2|size1077242_36534_36349",36534,36349,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1887","peg","scaffold2|size1077242_37342_36776",37342,36776,"-","Dihydrofolate reductase (EC 1.5.1.3)","FIG00000048","idu(2);5-FCL-like_protein idu(2);Folate_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.1888","peg","scaffold2|size1077242_37858_37502",37858,37502,"-","conserved protein YyaQ","FIG01450058","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1889","peg","scaffold2|size1077242_38256_38777",38256,38777,"+","Streptothricin acetyltransferase, Streptomyces lavendulae type","FIG00003590","icw(1);Streptothricin_resistance"]
["scaffold2|size1077242","fig|6666666.156949.peg.1890","peg","scaffold2|size1077242_39447_38845",39447,38845,"-","membrane protein, putative","FIG00439698","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1891","peg","scaffold2|size1077242_39890_39444",39890,39444,"-","GNAT family acetyltransferase YjcF","FIG00003802","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1892","peg","scaffold2|size1077242_40010_40462",40010,40462,"+","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1893","peg","scaffold2|size1077242_40581_41243",40581,41243,"+","putative metal-dependent hydrolase","FIG01442968","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1894","peg","scaffold2|size1077242_41279_41428",41279,41428,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1895","peg","scaffold2|size1077242_41450_41860",41450,41860,"+","Ketosteroid isomerase homolog","FIG01316545","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1896","peg","scaffold2|size1077242_41928_42716",41928,42716,"+","FIG01244235: hypothetical protein","FIG01244230","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1897","peg","scaffold2|size1077242_43491_42754",43491,42754,"-","transcriptional regulator (MerR family)","FIG01309711","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1898","peg","scaffold2|size1077242_44961_43651",44961,43651,"-","FIG01233340: hypothetical protein","FIG01456176","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1899","peg","scaffold2|size1077242_45204_45383",45204,45383,"+","FIG01243582: hypothetical protein","FIG01243581","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1900","peg","scaffold2|size1077242_45395_45841",45395,45841,"+","YybP","FIG01242854","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1901","peg","scaffold2|size1077242_46803_45874",46803,45874,"-","Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)","FIG00001231","isu;Phosphate_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1902","peg","scaffold2|size1077242_47008_47385",47008,47385,"+","Transcriptional regulator, MarR family; Cinnamoyl ester hydrolase","FIG01372763","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1903","peg","scaffold2|size1077242_47897_47415",47897,47415,"-","Spore coat protein F","FIG00014890","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1904","peg","scaffold2|size1077242_48043_48192",48043,48192,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1905","peg","scaffold2|size1077242_48419_49348",48419,49348,"+","FIG003573: hypothetical protein","FIG00003573","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1906","peg","scaffold2|size1077242_49385_51364",49385,51364,"+","Phosphoesterase, DHH family protein","FIG00011537","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1907","peg","scaffold2|size1077242_51361_51810",51361,51810,"+","LSU ribosomal protein L9p","FIG00000205","isu;Ribosome_LSU_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.1908","peg","scaffold2|size1077242_53898_51847",53898,51847,"-","FIG01240016: hypothetical protein","FIG01386762","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1909","peg","scaffold2|size1077242_55211_54003",55211,54003,"-","Cyanate MFS transporter","FIG01379741","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1910","peg","scaffold2|size1077242_55424_55284",55424,55284,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1911","peg","scaffold2|size1077242_55545_55748",55545,55748,"+","FIG01235398: hypothetical protein","FIG01235394","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1912","peg","scaffold2|size1077242_55996_55796",55996,55796,"-","CDS_ID OB2585","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1913","peg","scaffold2|size1077242_56166_57530",56166,57530,"+","Replicative DNA helicase (DnaB) (EC 3.6.4.12)","NA","isu;DNA-replication"]
["scaffold2|size1077242","fig|6666666.156949.peg.1914","peg","scaffold2|size1077242_57569_58069",57569,58069,"+","YycE","FIG01231972","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1915","peg","scaffold2|size1077242_58275_59567",58275,59567,"+","Adenylosuccinate synthetase (EC 6.3.4.4)","FIG00000107","isu;Purine_conversions"]
["scaffold2|size1077242","fig|6666666.156949.rna.45","rna","scaffold2|size1077242_59792_59864",59792,59864,"+","tRNA-Lys-TTT","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.rna.46","rna","scaffold2|size1077242_59877_59948",59877,59948,"+","tRNA-Glu-TTC","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.rna.47","rna","scaffold2|size1077242_60030_60103",60030,60103,"+","tRNA-Asp-GTC","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.rna.48","rna","scaffold2|size1077242_60142_60214",60142,60214,"+","tRNA-Phe-GAA","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1916","peg","scaffold2|size1077242_60595_61305",60595,61305,"+","Two-component response regulator SA14-24","FIG00001637","icw(1);Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"]
["scaffold2|size1077242","fig|6666666.156949.peg.1917","peg","scaffold2|size1077242_61313_63148",61313,63148,"+","Two-component sensor kinase SA14-24","FIG00122441","isu;Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"]
["scaffold2|size1077242","fig|6666666.156949.peg.1918","peg","scaffold2|size1077242_63138_64505",63138,64505,"+","FIG011501: YycH protein","FIG00011501","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1919","peg","scaffold2|size1077242_64492_65331,scaffold2|size1077242_65335_65340",64492,65340,"+","hypothetical protein SA_21","FIG00003193","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1920","peg","scaffold2|size1077242_65356_66150",65356,66150,"+","Zn-dependent hydrolase (beta-lactamase superfamily)","FIG00052300","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1921","peg","scaffold2|size1077242_66232_67434",66232,67434,"+","Serine protease, DegP/HtrA, do-like (EC 3.4.21.-)","FIG00083017","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1922","peg","scaffold2|size1077242_67454_67582",67454,67582,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1923","peg","scaffold2|size1077242_69126_67741",69126,67741,"-","Arginine utilization regulatory protein RocR","FIG00014742","icw(2);Arginine_and_Ornithine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.1924","peg","scaffold2|size1077242_69204_69332",69204,69332,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1925","peg","scaffold2|size1077242_69334_70572",69334,70572,"+","Ornithine aminotransferase (EC 2.6.1.13)","FIG00035201","icw(1);Arginine_and_Ornithine_Degradation isu;Dimethylarginine_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1926","peg","scaffold2|size1077242_70795_72198",70795,72198,"+","Arginine permease RocE","FIG00011632","icw(3);Arginine_and_Ornithine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.1927","peg","scaffold2|size1077242_72271_73161",72271,73161,"+","Arginase (EC 3.5.3.1)","FIG00003810","isu;Arginine_and_Ornithine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.1928","peg","scaffold2|size1077242_73312_73196",73312,73196,"-","regulator of the activity of phosphatase RapG","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1929","peg","scaffold2|size1077242_74410_73313",74410,73313,"-","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1930","peg","scaffold2|size1077242_74521_74991",74521,74991,"+","acetyltransferase, GNAT family","FIG01315364","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1931","peg","scaffold2|size1077242_75133_75870",75133,75870,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1932","peg","scaffold2|size1077242_75881_77044",75881,77044,"+","FIG01242922: hypothetical protein","FIG01242921","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1933","peg","scaffold2|size1077242_77060_77308",77060,77308,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1934","peg","scaffold2|size1077242_77412_77582",77412,77582,"+","FIG01234379: hypothetical protein","FIG01234378","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1935","peg","scaffold2|size1077242_77645_78871",77645,78871,"+","Threonine dehydrogenase and related Zn-dependent dehydrogenases","FIG00053044","isu;Threonine_degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.1936","peg","scaffold2|size1077242_79318_78905",79318,78905,"-","FIG01232189: hypothetical protein","FIG01339589","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1937","peg","scaffold2|size1077242_79754_80233",79754,80233,"+","LSU m3Psi1915 methyltransferase RlmH","FIG01280345","isu;tRNA_modification_Bacteria isu;RNA_methylation isu;Ribosome_biogenesis_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.1938","peg","scaffold2|size1077242_80371_83937",80371,83937,"+","USG protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1939","peg","scaffold2|size1077242_84092_86116",84092,86116,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1940","peg","scaffold2|size1077242_88648_86723",88648,86723,"-","Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)","FIG00008941","isu;Calvin-Benson_cycle isu;Glycolysis_and_Gluconeogenesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.1941","peg","scaffold2|size1077242_89120_89269",89120,89269,"+","YydF protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1942","peg","scaffold2|size1077242_89423_90286",89423,90286,"+","FIG00633815: hypothetical protein","FIG00633811","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1943","peg","scaffold2|size1077242_90267_91025",90267,91025,"+","Membrane-embedded metalloprotease YydH","FIG00629725","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1944","peg","scaffold2|size1077242_91175_91804",91175,91804,"+","ABC transporter ATP-binding protein YydI","FIG01114354","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1945","peg","scaffold2|size1077242_91825_92547",91825,92547,"+","ABC-2 family transporter protein YydJ","FIG00628856","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1946","peg","scaffold2|size1077242_92836_92675",92836,92675,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1947","peg","scaffold2|size1077242_93574_92864",93574,92864,"-","Transcriptional regulator, GntR family","FIG00621925","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1948","peg","scaffold2|size1077242_93951_94127",93951,94127,"+","PTS system, glucose-specific IIBC component (EC 2.7.1.69)","FIG00434424","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1949","peg","scaffold2|size1077242_94141_95580",94141,95580,"+","6-phospho-beta-glucosidase (EC 3.2.1.86)","FIG00001882","idu(3);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1950","peg","scaffold2|size1077242_95868_97220",95868,97220,"+","FIG00645980: hypothetical protein","FIG01598167","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1951","peg","scaffold2|size1077242_98861_97332",98861,97332,"-","Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)","FIG00001029","isu;Thioredoxin-disulfide_reductase"]
["scaffold2|size1077242","fig|6666666.156949.peg.1952","peg","scaffold2|size1077242_99438_98875",99438,98875,"-","Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)","FIG00000710","icw(1);Thioredoxin-disulfide_reductase"]
["scaffold2|size1077242","fig|6666666.156949.peg.1953","peg","scaffold2|size1077242_101310_99904",101310,99904,"-","6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)","FIG00000405","idu(2);Pentose_phosphate_pathway icw(1);D-gluconate_and_ketogluconates_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1954","peg","scaffold2|size1077242_102679_101333",102679,101333,"-","Gluconate permease, Bsu4004 homolog","FIG00009417","idu(1);D-gluconate_and_ketogluconates_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1955","peg","scaffold2|size1077242_104249_102708",104249,102708,"-","Gluconokinase (EC 2.7.1.12)","FIG00000861","isu;Entner-Doudoroff_Pathway icw(2);D-gluconate_and_ketogluconates_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1956","peg","scaffold2|size1077242_104973_104242",104973,104242,"-","Gluconate operon transcriptional repressor","FIG00009915","icw(3);D-gluconate_and_ketogluconates_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1957","peg","scaffold2|size1077242_105139_106317",105139,106317,"+","Glycerate kinase (EC 2.7.1.31)","FIG01320952","idu(1);Glycerate_metabolism idu(1);Serine-glyoxylate_cycle idu(1);Glycine_and_Serine_Utilization idu(1);Allantoin_Utilization idu(1);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism idu(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo"]
["scaffold2|size1077242","fig|6666666.156949.peg.1958","peg","scaffold2|size1077242_106410_107441",106410,107441,"+","Exopolysaccharide biosynthesis protein","FIG01323610","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1959","peg","scaffold2|size1077242_108173_107481",108173,107481,"-","CidA-associated membrane protein CidB","NA","idu(1);Murein_hydrolase_regulation_and_cell_death"]
["scaffold2|size1077242","fig|6666666.156949.peg.1960","peg","scaffold2|size1077242_108496_108143",108496,108143,"-","FIG01235622: hypothetical protein","FIG01235621","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1961","peg","scaffold2|size1077242_108774_109205",108774,109205,"+","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1962","peg","scaffold2|size1077242_110332_109262",110332,109262,"-","Short-chain dehydrogenase/reductase SDR","FIG00440067","idu(1);Transcription_repair_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.1963","peg","scaffold2|size1077242_110463_111038",110463,111038,"+","transcriptional regulator, TetR family","FIG00628138","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1964","peg","scaffold2|size1077242_111132_112145",111132,112145,"+","Quercetin 2,3-dioxygenase (EC 1.13.11.24)","FIG01229548","isu;Aromatic_dioxygenase_mess isu;Dioxygenases_(EC_1.13.11.-)"]
["scaffold2|size1077242","fig|6666666.156949.peg.1965","peg","scaffold2|size1077242_112253_113461",112253,113461,"+","FIG01243622: hypothetical protein","FIG01243616","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1966","peg","scaffold2|size1077242_113946_113491",113946,113491,"-","YxaI","FIG01236126","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1967","peg","scaffold2|size1077242_114201_114626",114201,114626,"+","Uncharacterized protein yxaJ","FIG01246795","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1968","peg","scaffold2|size1077242_114724_115959",114724,115959,"+","cell surface protein","FIG00513676","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1969","peg","scaffold2|size1077242_116469_116002",116469,116002,"-","YxaI","FIG01236126","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1970","peg","scaffold2|size1077242_117971_116634",117971,116634,"-","Aldehyde dehydrogenase (EC 1.2.1.3)","FIG01292786","idu(4);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate idu(4);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(4);Methylglyoxal_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1971","peg","scaffold2|size1077242_118114_119256",118114,119256,"+","FIG01236475: hypothetical protein","FIG01236473","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1972","peg","scaffold2|size1077242_121093_119774",121093,119774,"-","bacteriocin ABC transporter, bacteriocin-binding protein, putative","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1973","peg","scaffold2|size1077242_123427_121244",123427,121244,"-","Lipid A export ATP-binding/permease protein MsbA","FIG00017059","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1974","peg","scaffold2|size1077242_123754_123509",123754,123509,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1975","peg","scaffold2|size1077242_123975_123778",123975,123778,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1976","peg","scaffold2|size1077242_125086_124409,scaffold2|size1077242_124407_124399,scaffold2|size1077242_124395_124297",125086,124297,"-","Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1977","peg","scaffold2|size1077242_125203_125454",125203,125454,"+","Uncharacterized protein yxcA","FIG01435748","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1978","peg","scaffold2|size1077242_125622_127502",125622,127502,"+","Chaperone protein HtpG","FIG00000594","isu;Protein_chaperones"]
["scaffold2|size1077242","fig|6666666.156949.peg.1979","peg","scaffold2|size1077242_128930_127545",128930,127545,"-","Major myo-inositol transporter IolT","FIG00080381","idu(4);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1980","peg","scaffold2|size1077242_129476_129168",129476,129168,"-","FIG01229827: hypothetical protein","FIG01229823","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1981","peg","scaffold2|size1077242_130130_129480",130130,129480,"-","Uncharacterized protein yxcE","FIG01574671","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1982","peg","scaffold2|size1077242_130224_130418",130224,130418,"+","FIG01228959: hypothetical protein","FIG01311235","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1983","peg","scaffold2|size1077242_131324_130392",131324,130392,"-","Oxidoreductase ion channel","FIG00011879","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.1984","peg","scaffold2|size1077242_132133_131378",132133,131378,"-","Transcriptional repressor of the myo-inositol catabolic operon DeoR family","FIG00009069","icw(1);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1985","peg","scaffold2|size1077242_132550_134013",132550,134013,"+","Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)","FIG01257503","icw(1);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1986","peg","scaffold2|size1077242_134088_134903",134088,134903,"+","5-deoxy-glucuronate isomerase (EC 5.3.1.-)","FIG00001409","icw(4);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1987","peg","scaffold2|size1077242_134927_135904",134927,135904,"+","5-keto-2-deoxygluconokinase (EC 2.7.1.92)","FIG00014777","icw(5);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1988","peg","scaffold2|size1077242_135937_137850",135937,137850,"+","Epi-inositol hydrolase (EC 3.7.1.-)","FIG00029868","icw(7);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1989","peg","scaffold2|size1077242_137866_138759",137866,138759,"+","Inosose dehydratase (EC 4.2.1.44)","FIG00001357","icw(3);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1990","peg","scaffold2|size1077242_138774_140090",138774,140090,"+","Minor myo-inositol transporter IolF","FIG00121047","icw(2);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1991","peg","scaffold2|size1077242_140113_141147",140113,141147,"+","Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)","FIG00043259","idu(2);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1992","peg","scaffold2|size1077242_141167_142036",141167,142036,"+","Glyceraldehyde-3-phosphate ketol-isomerase (EC 5.3.1.1)","FIG00087231","icw(1);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1993","peg","scaffold2|size1077242_142122_142958",142122,142958,"+","Inosose isomerase (EC 5.3.99.-)","FIG00001893","icw(5);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1994","peg","scaffold2|size1077242_142979_143851",142979,143851,"+","5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)","FIG00072450","icw(3);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.1995","peg","scaffold2|size1077242_143959_144648",143959,144648,"+","Two-component response regulator YvcP","FIG00147825","idu(1);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.1996","peg","scaffold2|size1077242_144645_145622",144645,145622,"+","Two-component sensor kinase YvcQ","FIG00032907","icw(2);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.1997","peg","scaffold2|size1077242_145766_146539",145766,146539,"+","ABC transporter ATP-binding protein YvcR","FIG00007923","icw(1);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.1998","peg","scaffold2|size1077242_146514_148382",146514,148382,"+","ABC transporter permease protein YvcS","FIG00011613","icw(3);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.1999","peg","scaffold2|size1077242_148396_148743",148396,148743,"+","DUF1093 domain-containing protein","FIG01362357","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2000","peg","scaffold2|size1077242_149749_148784",149749,148784,"-","Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)","FIG00513154","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2001","peg","scaffold2|size1077242_149927_150325",149927,150325,"+","FIG01239519: hypothetical protein","FIG01239515","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2002","peg","scaffold2|size1077242_150722_150369",150722,150369,"-","FIG01238575: hypothetical protein","FIG01238574","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2003","peg","scaffold2|size1077242_151335_150970",151335,150970,"-","FIG01232478: hypothetical protein","FIG01232477","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2004","peg","scaffold2|size1077242_151426_151860",151426,151860,"+","FIG01231818: hypothetical protein","FIG01231817","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2005","peg","scaffold2|size1077242_151841_152398",151841,152398,"+","YxeG","FIG01228626","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2006","peg","scaffold2|size1077242_152438_153250",152438,153250,"+","Promiscuous sugar phosphatase YidA, haloacid dehalogenase-like phosphatase family","FIG00743184","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2007","peg","scaffold2|size1077242_153405_154391",153405,154391,"+","Choloylglycine hydrolase (EC 3.5.1.24)","FIG00009563","isu;Bile_hydrolysis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2008","peg","scaffold2|size1077242_154822_156147",154822,156147,"+","Nitrilotriacetate monooxygenase component A (EC 1.14.13.-)","FIG01346536","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2009","peg","scaffold2|size1077242_156161_156658",156161,156658,"+","FIG01228824: hypothetical protein","FIG01228823","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2010","peg","scaffold2|size1077242_156683_157477",156683,157477,"+","ABC-type amino acid transport/signal transduction systems, periplasmic component/domain","FIG01221170","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2011","peg","scaffold2|size1077242_157500_158174",157500,158174,"+","Amino acid ABC transporter, permease protein","FIG01322745","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2012","peg","scaffold2|size1077242_158187_158936",158187,158936,"+","ABC-type polar amino acid transport system, ATPase component","FIG01304241","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2013","peg","scaffold2|size1077242_158953_160095",158953,160095,"+","N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)","FIG00016846","idu(1);Lysine_Biosynthesis_DAP_Pathway idu(1);Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch"]
["scaffold2|size1077242","fig|6666666.156949.peg.2014","peg","scaffold2|size1077242_160092_161429",160092,161429,"+","FIG01227777: hypothetical protein","FIG01227776","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2015","peg","scaffold2|size1077242_161499_162611",161499,162611,"+","Ethanolamine permease","FIG00003466","isu;Ethanolamine_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2016","peg","scaffold2|size1077242_162684_163511",162684,163511,"+","FIG01235663: hypothetical protein","FIG01235662","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2017","peg","scaffold2|size1077242_163644_164585",163644,164585,"+","Deoxyribonucleoside regulator DeoR (transcriptional repressor)","FIG00011057","isu;Deoxyribose_and_Deoxynucleoside_Catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2018","peg","scaffold2|size1077242_164575_164700",164575,164700,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2019","peg","scaffold2|size1077242_164691_165362",164691,165362,"+","Deoxyribose-phosphate aldolase (EC 4.1.2.4)","FIG00000450","icw(2);Deoxyribose_and_Deoxynucleoside_Catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2020","peg","scaffold2|size1077242_165443_166624",165443,166624,"+","Nucleoside permease NupC","FIG01959522","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2021","peg","scaffold2|size1077242_166654_167955",166654,167955,"+","Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)","FIG00038456","icw(1);Deoxyribose_and_Deoxynucleoside_Catabolism isu;pyrimidine_conversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2022","peg","scaffold2|size1077242_169426_167999",169426,167999,"-","Histidine transport protein (permease)","FIG00012083","icw(3);Histidine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2023","peg","scaffold2|size1077242_170461_169502",170461,169502,"-","Formiminoglutamase (EC 3.5.3.8)","FIG00138112","isu;Histidine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2024","peg","scaffold2|size1077242_171719_170454",171719,170454,"-","Imidazolonepropionase (EC 3.5.2.7)","FIG00057840","icw(2);Histidine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2025","peg","scaffold2|size1077242_173390_171732",173390,171732,"-","Urocanate hydratase (EC 4.2.1.49)","FIG00094176","icw(3);Histidine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2026","peg","scaffold2|size1077242_174913_173387",174913,173387,"-","Histidine ammonia-lyase (EC 4.3.1.3)","FIG00091940","icw(4);Histidine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2027","peg","scaffold2|size1077242_175472_175026",175472,175026,"-","Hut operon positive regulatory protein","FIG00008199","isu;Histidine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2028","peg","scaffold2|size1077242_176088_177497",176088,177497,"+","FIG01241651: hypothetical protein","FIG01241650","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2029","peg","scaffold2|size1077242_177803_178168",177803,178168,"+","FIG01244137: hypothetical protein","FIG01244135","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2030","peg","scaffold2|size1077242_178180_178449",178180,178449,"+","YxiC","FIG01237882","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2031","peg","scaffold2|size1077242_178469_180043",178469,180043,"+","Putative toxin component near putative ESAT-related proteins, repetitive / Repetitive hypothetical protein near ESAT cluster, SA0282 homolog","FIG00149320","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2032","peg","scaffold2|size1077242_180036_180284",180036,180284,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2033","peg","scaffold2|size1077242_180351_180575",180351,180575,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2034","peg","scaffold2|size1077242_180576_180782",180576,180782,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2035","peg","scaffold2|size1077242_180808_182001",180808,182001,"+","FIG01235136: hypothetical protein","FIG01235132","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2036","peg","scaffold2|size1077242_182018_182356",182018,182356,"+","FIG01245160: hypothetical protein","FIG01245156","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2037","peg","scaffold2|size1077242_182776_184605",182776,184605,"+","PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69) / PTS system, beta-glucoside-specific IIC component / PTS system, beta-glucoside-specific IIA component","FIG00007563","icw(1);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2038","peg","scaffold2|size1077242_184627_186036",184627,186036,"+","6-phospho-beta-glucosidase (EC 3.2.1.86)","FIG00001882","idu(3);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2039","peg","scaffold2|size1077242_186139_186585",186139,186585,"+","Universal stress protein family","FIG00017615","isu;CBSS-269801.1.peg.809"]
["scaffold2|size1077242","fig|6666666.156949.peg.2040","peg","scaffold2|size1077242_186737_187672",186737,187672,"+","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","idu(11);Queuosine-Archaeosine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2041","peg","scaffold2|size1077242_187837_194868",187837,194868,"+","cell wall-associated protein","FIG01558433","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2042","peg","scaffold2|size1077242_195051_195530",195051,195530,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2043","peg","scaffold2|size1077242_195531_195917",195531,195917,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2044","peg","scaffold2|size1077242_195993_196844",195993,196844,"+","Uncharacterized protein yxzG","FIG01239059","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2045","peg","scaffold2|size1077242_196862_197350",196862,197350,"+","hypothetical protein","FIG01502012","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2046","peg","scaffold2|size1077242_197377_197673",197377,197673,"+","Uncharacterized protein yxiJ","FIG01610899","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2047","peg","scaffold2|size1077242_197689_198141",197689,198141,"+","Uncharacterized protein yxiK","FIG01230735","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2048","peg","scaffold2|size1077242_198159_198509",198159,198509,"+","FIG01227321: hypothetical protein","FIG01227319","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2049","peg","scaffold2|size1077242_198639_199787",198639,199787,"+","rhamnogalacturonan acetylesterase","FIG00016888","idu(2);L-rhamnose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2050","peg","scaffold2|size1077242_199870_201309",199870,201309,"+","ATP-dependent RNA helicase YxiN","FIG00013313","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2051","peg","scaffold2|size1077242_202681_204105",202681,204105,"+","FIG00715517: hypothetical protein","FIG00715515","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2052","peg","scaffold2|size1077242_204083_206800",204083,206800,"+","Endonuclease","FIG01310191","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2053","peg","scaffold2|size1077242_206784_207716",206784,207716,"+","FIG01231397: hypothetical protein","FIG00775420","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2054","peg","scaffold2|size1077242_207732_209774",207732,209774,"+","FIG01232333: hypothetical protein","FIG00840111","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2055","peg","scaffold2|size1077242_210113_211756",210113,211756,"+","DNA-cytosine methyltransferase (EC 2.1.1.37)","FIG00003334","idu(1);DNA_repair,_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2056","peg","scaffold2|size1077242_213759_212506",213759,212506,"-","membrane protein, putative","FIG00439698","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2057","peg","scaffold2|size1077242_213801_213914",213801,213914,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2058","peg","scaffold2|size1077242_214047_214646",214047,214646,"+","FIG01230138: hypothetical protein","FIG01230137","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2059","peg","scaffold2|size1077242_214741_215574",214741,215574,"+","Beta-glucoside bgl operon antiterminator, BglG family","FIG00001011","idu(2);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2060","peg","scaffold2|size1077242_217394_216219",217394,216219,"-","Ca(2+) Citrate symporter (TC 2.A.11.1.2)","FIG01232889","isu;Citrate_Metabolism,_Transport,_and_Regulation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2061","peg","scaffold2|size1077242_217595_219655",217595,219655,"+","Catalase (EC 1.11.1.6)","FIG00000313","idu(4);Oxidative_stress idu(4);Protection_from_Reactive_Oxygen_Species"]
["scaffold2|size1077242","fig|6666666.156949.peg.2062","peg","scaffold2|size1077242_219705_219995",219705,219995,"+","FIG01231566: hypothetical protein","FIG01231565","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2063","peg","scaffold2|size1077242_220140_220811",220140,220811,"+","FIG01242227: hypothetical protein","FIG01242219","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2064","peg","scaffold2|size1077242_222046_220853",222046,220853,"-","Nucleoside permease NupC","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2065","peg","scaffold2|size1077242_222521_222387",222521,222387,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2066","peg","scaffold2|size1077242_222641_223510",222641,223510,"+","Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51)","FIG00004986","isu;RNA_methylation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2067","peg","scaffold2|size1077242_223511_223630",223511,223630,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2068","peg","scaffold2|size1077242_223666_225084",223666,225084,"+","D-beta-hydroxybutyrate permease","FIG00015338","icw(1);Polyhydroxybutyrate_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2069","peg","scaffold2|size1077242_225108_225824",225108,225824,"+","Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)","FIG00133228","isu;Catechol_branch_of_beta-ketoadipate_pathway isu;Protocatechuate_branch_of_beta-ketoadipate_pathway isu;Serine-glyoxylate_cycle isu;Leucine_Degradation_and_HMG-CoA_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2070","peg","scaffold2|size1077242_225821_226471",225821,226471,"+","Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9)","FIG00132715","icw(2);Polyhydroxybutyrate_metabolism isu;Lysine_fermentation isu;Acetyl-CoA_fermentation_to_Butyrate"]
["scaffold2|size1077242","fig|6666666.156949.peg.2071","peg","scaffold2|size1077242_226488_227261",226488,227261,"+","D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)","FIG01151414","isu;Polyhydroxybutyrate_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2072","peg","scaffold2|size1077242_228521_227313",228521,227313,"-","Methionine synthase II (cobalamin-independent)","FIG01338335","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2073","peg","scaffold2|size1077242_229868_228702",229868,228702,"-","Methionine synthase II (cobalamin-independent)","FIG01338335","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2074","peg","scaffold2|size1077242_230579_230091",230579,230091,"-","FIG01226666: hypothetical protein","FIG01226665","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2075","peg","scaffold2|size1077242_230878_230708",230878,230708,"-","Uncharacterized protein yxjJ","FIG01388499","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2076","peg","scaffold2|size1077242_231389_231261",231389,231261,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2077","peg","scaffold2|size1077242_232726_231494",232726,231494,"-","Tripeptide aminopeptidase (EC 3.4.11.4)","FIG00554193","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2078","peg","scaffold2|size1077242_233432_232776",233432,232776,"-","two-component system, regulatory protein","FIG01159939","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2079","peg","scaffold2|size1077242_234642_233419",234642,233419,"-","putative two-component system sensor kinase","FIG00868571","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2080","peg","scaffold2|size1077242_235133_234660",235133,234660,"-","FIG01234033: hypothetical protein","FIG01594296","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2081","peg","scaffold2|size1077242_235118_235234",235118,235234,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2082","peg","scaffold2|size1077242_236087_235212",236087,235212,"-","transcriptional regulator, MerR family","FIG00482799","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2083","peg","scaffold2|size1077242_236217_236723",236217,236723,"+","Phospholipid-binding protein","FIG01351068","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2084","peg","scaffold2|size1077242_236838_237857",236838,237857,"+","UDP-glucose 4-epimerase (EC 5.1.3.2)","FIG00022300","idu(3);Rhamnose_containing_glycans idu(3);Lactose_and_Galactose_Uptake_and_Utilization idu(3);N-linked_Glycosylation_in_Bacteria idu(3);Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway"]
["scaffold2|size1077242","fig|6666666.156949.peg.2085","peg","scaffold2|size1077242_238573_237932",238573,237932,"-","FIG01236936: hypothetical protein","FIG01370908","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2086","peg","scaffold2|size1077242_239042_239878",239042,239878,"+","membrane protein, putative","FIG00439698","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2087","peg","scaffold2|size1077242_241377_239920",241377,239920,"-","Aldehyde dehydrogenase (EC 1.2.1.3)","FIG01292786","idu(4);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate idu(4);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(4);Methylglyoxal_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2088","peg","scaffold2|size1077242_241561_242454",241561,242454,"+","Fis-type helix-turn-helix domain protein","FIG01235203","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2089","peg","scaffold2|size1077242_242575_243672",242575,243672,"+","Multiple sugar ABC transporter, ATP-binding protein","FIG00007025","idu(1);Fructooligosaccharides(FOS)_and_Raffinose_Utilization idu(1);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2090","peg","scaffold2|size1077242_243748_243885",243748,243885,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2091","peg","scaffold2|size1077242_243882_244007",243882,244007,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2092","peg","scaffold2|size1077242_244417_244052",244417,244052,"-","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2093","peg","scaffold2|size1077242_244598_245437",244598,245437,"+","Polysaccharide deacetylase","FIG00004655","idu(1);Polysaccharide_deacetylases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2094","peg","scaffold2|size1077242_245651_245451",245651,245451,"-","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2095","peg","scaffold2|size1077242_247391_245709",247391,245709,"-","FIG01225828: hypothetical protein","FIG01225827","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2096","peg","scaffold2|size1077242_248872_247520",248872,247520,"-","Malate Na(+) symporter","FIG01304383","idu(2);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold2|size1077242","fig|6666666.156949.peg.2097","peg","scaffold2|size1077242_249426_250832",249426,250832,"+","Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)","FIG00096593","idu(1);Terminal_cytochrome_d_ubiquinol_oxidases idu(1);Terminal_cytochrome_oxidases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2098","peg","scaffold2|size1077242_250816_251832",250816,251832,"+","Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)","FIG00000390","idu(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase icw(1);Terminal_cytochrome_d_ubiquinol_oxidases icw(1);Terminal_cytochrome_oxidases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2099","peg","scaffold2|size1077242_251832_253526",251832,253526,"+","Transport ATP-binding protein CydC","FIG00046358","icw(3);Terminal_cytochrome_d_ubiquinol_oxidases icw(3);Terminal_cytochrome_oxidases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2100","peg","scaffold2|size1077242_253523_255250",253523,255250,"+","Transport ATP-binding protein CydD","FIG01010650","icw(2);Terminal_cytochrome_d_ubiquinol_oxidases icw(2);Terminal_cytochrome_oxidases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2101","peg","scaffold2|size1077242_255376_255260",255376,255260,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2102","peg","scaffold2|size1077242_255336_256166",255336,256166,"+","NAD(P)HX dehydratase","FIG00001859","isu;YjeE"]
["scaffold2|size1077242","fig|6666666.156949.peg.2103","peg","scaffold2|size1077242_257554_256181",257554,256181,"-","Cytosine/purine/uracil/thiamine/allantoin permease family protein","FIG00003506","idu(1);Purine_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2104","peg","scaffold2|size1077242_257766_258302",257766,258302,"+","RNA polymerase sigma-70 factor","FIG01303902","idu(2);CBSS-316057.3.peg.1308 idu(2);Transcription_initiation,_bacterial_sigma_factors"]
["scaffold2|size1077242","fig|6666666.156949.peg.2105","peg","scaffold2|size1077242_258295_258615",258295,258615,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2106","peg","scaffold2|size1077242_258612_258818",258612,258818,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2107","peg","scaffold2|size1077242_258815_259003",258815,259003,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2108","peg","scaffold2|size1077242_259010_259897",259010,259897,"+","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2109","peg","scaffold2|size1077242_259894_260499,scaffold2|size1077242_260501_260674",259894,260674,"+","FIG01229594: hypothetical protein","FIG01229592","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2110","peg","scaffold2|size1077242_261869_260667",261869,260667,"-","putative transport protein","FIG01046362","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2111","peg","scaffold2|size1077242_263617_261974",263617,261974,"-","Catalase (EC 1.11.1.6)","FIG00000313","idu(4);Oxidative_stress idu(4);Protection_from_Reactive_Oxygen_Species"]
["scaffold2|size1077242","fig|6666666.156949.peg.2112","peg","scaffold2|size1077242_263746_264336",263746,264336,"+","DNA-3-methyladenine glycosylase II (EC 3.2.2.21)","FIG00001134","idu(2);DNA_Repair_Base_Excision"]
["scaffold2|size1077242","fig|6666666.156949.peg.2113","peg","scaffold2|size1077242_264338_264523",264338,264523,"+","Uncharacterized protein yxzF","FIG01234313","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2114","peg","scaffold2|size1077242_264685_266610",264685,266610,"+","Transcriptional antiterminator of lichenan operon, BglG family","FIG00006336","icw(2);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2115","peg","scaffold2|size1077242_266796_267047",266796,267047,"+","PTS system, lichenan-, cellobiose-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)","FIG01287890","idu(1);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2116","peg","scaffold2|size1077242_267063_268421",267063,268421,"+","PTS system, cellobiose-specific IIC component (EC 2.7.1.69)","FIG00029916","icw(3);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2117","peg","scaffold2|size1077242_268440_268772",268440,268772,"+","PTS system, cellobiose-specific IIA component (EC 2.7.1.69)","FIG00011115","icw(4);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2118","peg","scaffold2|size1077242_268769_270097",268769,270097,"+","6-phospho-beta-glucosidase (EC 3.2.1.86)","FIG00001882","icw(1);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2119","peg","scaffold2|size1077242_271222_270131",271222,270131,"-","Branched-chain amino acid aminotransferase (EC 2.6.1.42)","FIG00050603","idu(1);Isoleucine_degradation idu(1);Branched-Chain_Amino_Acid_Biosynthesis idu(1);Pyruvate_Alanine_Serine_Interconversions idu(1);Alanine_biosynthesis idu(1);Leucine_Degradation_and_HMG-CoA_Metabolism idu(1);Valine_degradation idu(1);Leucine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2120","peg","scaffold2|size1077242_272122_271364",272122,271364,"-","DltE","FIG01328952","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2121","peg","scaffold2|size1077242_273389_272211",273389,272211,"-","Poly(glycerophosphate chain) D-alanine transfer protein DltD","FIG00001546","isu;D-Alanyl_Lipoteichoic_Acid_Biosynthesis isu;Methicillin_resistance_in_Staphylococci isu;Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2122","peg","scaffold2|size1077242_273625_273389",273625,273389,"-","D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)","FIG00061715","icw(3);D-Alanyl_Lipoteichoic_Acid_Biosynthesis icw(1);Methicillin_resistance_in_Staphylococci icw(1);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2123","peg","scaffold2|size1077242_274829_273642",274829,273642,"-","D-alanyl transfer protein DltB","FIG00001531","icw(1);D-Alanyl_Lipoteichoic_Acid_Biosynthesis icw(2);Methicillin_resistance_in_Staphylococci icw(2);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2124","peg","scaffold2|size1077242_276337_274826",276337,274826,"-","D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)","FIG00001579","icw(2);D-Alanyl_Lipoteichoic_Acid_Biosynthesis icw(3);Methicillin_resistance_in_Staphylococci icw(3);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2125","peg","scaffold2|size1077242_276504_276355",276504,276355,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2126","peg","scaffold2|size1077242_276654_276788",276654,276788,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2127","peg","scaffold2|size1077242_277050_276865",277050,276865,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2128","peg","scaffold2|size1077242_277002_277886",277002,277886,"+","1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)","FIG00085608","isu;Menaquinone_and_Phylloquinone_Biosynthesis isu;Menaquinone_and_Phylloquinone_Biosynthesis_--_gjo"]
["scaffold2|size1077242","fig|6666666.156949.peg.2129","peg","scaffold2|size1077242_278028_278660",278028,278660,"+","GTP pyrophosphokinase (EC 2.7.6.5)","FIG01969905","idu(1);CBSS-222523.1.peg.1311"]
["scaffold2|size1077242","fig|6666666.156949.peg.2130","peg","scaffold2|size1077242_278790_279983",278790,279983,"+","Permeases of the major facilitator superfamily","FIG00613966","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2131","peg","scaffold2|size1077242_279990_280370,scaffold2|size1077242_280374_280400",279990,280400,"+","Carboxymuconolactone decarboxylase","FIG00825342","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2132","peg","scaffold2|size1077242_280441_281280",280441,281280,"+","Putative DNA-binding protein in cluster with Type I restriction-modification system","FIG00005283","isu;Restriction-Modification_System"]
["scaffold2|size1077242","fig|6666666.156949.peg.2133","peg","scaffold2|size1077242_282695_281328",282695,281328,"-","Aminopeptidase Y (Arg, Lys, Leu preference) (EC 3.4.11.15)","FIG00004058","isu;Aminopeptidases_(EC_3.4.11.-)"]
["scaffold2|size1077242","fig|6666666.156949.peg.2134","peg","scaffold2|size1077242_284092_282851",284092,282851,"-","Tyrosyl-tRNA synthetase (EC 6.1.1.1)","FIG00346039","idu(1);tRNA_aminoacylation,_Tyr"]
["scaffold2|size1077242","fig|6666666.156949.peg.2135","peg","scaffold2|size1077242_284858_284343",284858,284343,"-","Putative HTH-type transcriptional regulator ywaE","FIG01449381","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2136","peg","scaffold2|size1077242_285052_284930",285052,284930,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2137","peg","scaffold2|size1077242_285008_285721",285008,285721,"+","YwaF","FIG01232655","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2138","peg","scaffold2|size1077242_285831_286691",285831,286691,"+","Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)","FIG00133002","idu(4);Pyridoxin_(Vitamin_B6)_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2139","peg","scaffold2|size1077242_287582_286740",287582,286740,"-","Beta-glucoside bgl operon antiterminator, BglG family","FIG00001011","idu(2);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2140","peg","scaffold2|size1077242_289015_287636",289015,287636,"-","PTS system, sucrose-specific IIB component (EC 2.7.1.69) / PTS system, sucrose-specific IIC component (EC 2.7.1.69)","NA","idu(2);Sucrose_utilization idu(2);Sucrose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2141","peg","scaffold2|size1077242_291385_289448",291385,289448,"-","FIG01236687: hypothetical protein","FIG01236686","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2142","peg","scaffold2|size1077242_291613_292947",291613,292947,"+","PTS system, cellobiose-specific IIC component (EC 2.7.1.69)","FIG00029916","idu(2);Beta-Glucoside_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2143","peg","scaffold2|size1077242_293025_293702",293025,293702,"+","FIG01227362: hypothetical protein","FIG01227359","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2144","peg","scaffold2|size1077242_294121_293741",294121,293741,"-","Lactoylglutathione lyase and related lyases","FIG01248773","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2145","peg","scaffold2|size1077242_294242_295429",294242,295429,"+","LSU m5C1962 methyltransferase RlmI","FIG00004612","isu;RNA_methylation isu;Ribosome_biogenesis_bacterial isu;CBSS-83333.1.peg.946"]
["scaffold2|size1077242","fig|6666666.156949.peg.2146","peg","scaffold2|size1077242_295660_295463",295660,295463,"-","alternate gene name: ipa-20r","FIG01319937","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2147","peg","scaffold2|size1077242_296896_295694",296896,295694,"-","Probable 3-phenylpropionic acid transporter","FIG00109428","isu;Cinnamic_Acid_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2148","peg","scaffold2|size1077242_297676_296999",297676,296999,"-","CidA-associated membrane protein CidB","FIG00001473","icw(1);Murein_hydrolase_regulation_and_cell_death"]
["scaffold2|size1077242","fig|6666666.156949.peg.2149","peg","scaffold2|size1077242_298044_297658",298044,297658,"-","Holin-like protein CidA","FIG00001480","icw(2);Murein_hydrolase_regulation_and_cell_death"]
["scaffold2|size1077242","fig|6666666.156949.peg.2150","peg","scaffold2|size1077242_298150_299055",298150,299055,"+","LysR family regulatory protein CidR","FIG00001569","idu(1);Murein_hydrolase_regulation_and_cell_death"]
["scaffold2|size1077242","fig|6666666.156949.peg.2151","peg","scaffold2|size1077242_299063_299881",299063,299881,"+","Hydroxyethylthiazole kinase (EC 2.7.1.50)","FIG00000957","isu;5-FCL-like_protein isu;Thiamin_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2152","peg","scaffold2|size1077242_299878_300546",299878,300546,"+","Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)","FIG00000407","icw(1);5-FCL-like_protein icw(1);Thiamin_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2153","peg","scaffold2|size1077242_300703_302148",300703,302148,"+","Ferrous iron transport permease EfeU","FIG00002587","icw(1);Ferrous_iron_transporter_EfeUOB,_low-pH-induced"]
["scaffold2|size1077242","fig|6666666.156949.peg.2154","peg","scaffold2|size1077242_302145_303302",302145,303302,"+","Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain","FIG00137588","icw(2);Ferrous_iron_transporter_EfeUOB,_low-pH-induced"]
["scaffold2|size1077242","fig|6666666.156949.peg.2155","peg","scaffold2|size1077242_303321_304571",303321,304571,"+","Ferrous iron transport peroxidase EfeB","FIG00137529","isu;Ferrous_iron_transporter_EfeUOB,_low-pH-induced"]
["scaffold2|size1077242","fig|6666666.156949.peg.2156","peg","scaffold2|size1077242_304855_305475",304855,305475,"+","YwbO","FIG01237004","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2157","peg","scaffold2|size1077242_307029_305488",307029,305488,"-","Putative symporter YjcG","FIG00015314","isu;CBSS-279010.5.peg.3166"]
["scaffold2|size1077242","fig|6666666.156949.peg.2158","peg","scaffold2|size1077242_307334_307026",307334,307026,"-","FIG013268: hypothetical protein","FIG00013268","icw(1);CBSS-279010.5.peg.3166"]
["scaffold2|size1077242","fig|6666666.156949.peg.2159","peg","scaffold2|size1077242_307935_307777",307935,307777,"-","FIG01237391: hypothetical protein","FIG01237389","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2160","peg","scaffold2|size1077242_308290_308961",308290,308961,"+","FIG01231791: hypothetical protein","FIG01231790","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2161","peg","scaffold2|size1077242_308979_309362",308979,309362,"+","cell wall teichoic acid glycosylation protein GtcA","FIG01412561","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2162","peg","scaffold2|size1077242_309443_310615",309443,310615,"+","Galactokinase (EC 2.7.1.6)","FIG00024073","icw(1);Lactose_and_Galactose_Uptake_and_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2163","peg","scaffold2|size1077242_310619_312160",310619,312160,"+","Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)","FIG00623809","isu;Lactose_and_Galactose_Uptake_and_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2164","peg","scaffold2|size1077242_312479_312231",312479,312231,"-","FIG01231110: hypothetical protein","FIG01231108","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2165","peg","scaffold2|size1077242_312822_312935",312822,312935,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2166","peg","scaffold2|size1077242_313001_313957",313001,313957,"+","AA3-600 quinol oxidase subunit II","FIG00003341","icw(1);Terminal_AA3-600_quinol_oxidase icw(1);Terminal_cytochrome_oxidases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2167","peg","scaffold2|size1077242_313985_315934",313985,315934,"+","AA3-600 quinol oxidase subunit I","FIG00003353","icw(3);Terminal_AA3-600_quinol_oxidase icw(3);Terminal_cytochrome_oxidases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2168","peg","scaffold2|size1077242_315948_316562",315948,316562,"+","AA3-600 quinol oxidase subunit IIII","FIG00003152","icw(2);Terminal_AA3-600_quinol_oxidase icw(2);Terminal_cytochrome_oxidases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2169","peg","scaffold2|size1077242_316564_316938",316564,316938,"+","AA3-600 quinol oxidase subunit IV","NA","isu;Terminal_AA3-600_quinol_oxidase isu;Terminal_cytochrome_oxidases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2170","peg","scaffold2|size1077242_317243_316980",317243,316980,"-","FIG01230831: hypothetical protein","FIG01230830","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2171","peg","scaffold2|size1077242_317739_318920",317739,318920,"+","Cell division protein FtsW","FIG00000025","idu(2);Bacterial_Cell_Division idu(2);cell_division_cluster_containing_FtsQ idu(2);Bacterial_Cytoskeleton"]
["scaffold2|size1077242","fig|6666666.156949.peg.2172","peg","scaffold2|size1077242_319038_318910",319038,318910,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2173","peg","scaffold2|size1077242_319026_319775",319026,319775,"+","Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-)","FIG00904859","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2174","peg","scaffold2|size1077242_319949_320950",319949,320950,"+","Coenzyme F420-dependent oxidoreductase","FIG00015014","isu;Anaerobic_respiratory_reductases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2175","peg","scaffold2|size1077242_323408_320988",323408,320988,"-","extracellular serine protease","FIG01386572","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2176","peg","scaffold2|size1077242_323836_324240",323836,324240,"+","Uncharacterized protein ywcI","FIG01233612","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2177","peg","scaffold2|size1077242_324280_325110",324280,325110,"+","SacPA operon antiterminator","FIG00673161","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2178","peg","scaffold2|size1077242_325919_325149",325919,325149,"-","Formate efflux transporter (TC 2.A.44 family)","FIG00010675","idu(1);Fermentations:_Mixed_acid"]
["scaffold2|size1077242","fig|6666666.156949.peg.2179","peg","scaffold2|size1077242_326221_327606",326221,327606,"+","PTS system, sucrose-specific IIB component (EC 2.7.1.69) / PTS system, sucrose-specific IIC component (EC 2.7.1.69)","FIG00081068","idu(2);Sucrose_utilization idu(2);Sucrose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2180","peg","scaffold2|size1077242_327603_329042",327603,329042,"+","Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)","FIG00010392","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2181","peg","scaffold2|size1077242_329136_329384",329136,329384,"+","alternate gene name: ipa-51d","FIG01234166","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2182","peg","scaffold2|size1077242_330289_329474",330289,329474,"-","Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)","FIG01469715","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2183","peg","scaffold2|size1077242_330433_330771",330433,330771,"+","Transcriptional regulator, PadR family","FIG00002474","idu(3);CBSS-1352.1.peg.856"]
["scaffold2|size1077242","fig|6666666.156949.peg.2184","peg","scaffold2|size1077242_330764_331399",330764,331399,"+","FIG01234417: hypothetical protein","FIG01234414","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2185","peg","scaffold2|size1077242_331516_331980",331516,331980,"+","Uncharacterized protein ywdE precursor","FIG01227373","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2186","peg","scaffold2|size1077242_332070_332876",332070,332876,"+","Glycosyl transferase, family 2","FIG00454917","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2187","peg","scaffold2|size1077242_332890_333567",332890,333567,"+","Uracil-DNA glycosylase, family 1","FIG00000538","isu;DNA_Repair_Base_Excision isu;Uracil-DNA_glycosylase"]
["scaffold2|size1077242","fig|6666666.156949.peg.2188","peg","scaffold2|size1077242_334962_333592",334962,333592,"-","Aldehyde dehydrogenase (EC 1.2.1.3)","FIG01292786","idu(4);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate idu(4);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(4);Methylglyoxal_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2189","peg","scaffold2|size1077242_334940_335086",334940,335086,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2190","peg","scaffold2|size1077242_335091_335447",335091,335447,"+","alternate gene name: ipa-59d","FIG01468246","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2191","peg","scaffold2|size1077242_335467_336789",335467,336789,"+","Xanthine permease","NA","idu(3);Xanthine_Metabolism_in_Bacteria idu(3);Purine_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2192","peg","scaffold2|size1077242_336851_337222",336851,337222,"+","COG2363","FIG00018398","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2193","peg","scaffold2|size1077242_337811_337266",337811,337266,"-","alternate gene name: ipa-62r","FIG01233623","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2194","peg","scaffold2|size1077242_338131_338901",338131,338901,"+","spore coat polysaccharide synthesis","FIG01228374","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2195","peg","scaffold2|size1077242_338906_340330",338906,340330,"+","FIG01235117: hypothetical protein","FIG01235116","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2196","peg","scaffold2|size1077242_340351_341520",340351,341520,"+","Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase","FIG00150184","isu;N-linked_Glycosylation_in_Bacteria"]
["scaffold2|size1077242","fig|6666666.156949.peg.2197","peg","scaffold2|size1077242_341521_342390",341521,342390,"+","SpsD","FIG01232125","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2198","peg","scaffold2|size1077242_342390_343511",342390,343511,"+","N-acetylneuraminate synthase (EC 2.5.1.56)","NA","isu;CMP-N-acetylneuraminate_Biosynthesis isu;Sialic_Acid_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2199","peg","scaffold2|size1077242_343504_344226",343504,344226,"+","Spore coat polysaccharide biosynthesis protein SpsF","FIG01228786","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2200","peg","scaffold2|size1077242_344229_345248",344229,345248,"+","N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43)","NA","icw(1);CMP-N-acetylneuraminate_Biosynthesis icw(1);Sialic_Acid_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2201","peg","scaffold2|size1077242_345273_346013",345273,346013,"+","Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)","FIG00000187","icw(1);dTDP-rhamnose_synthesis icw(1);Rhamnose_containing_glycans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2202","peg","scaffold2|size1077242_346013_346960",346013,346960,"+","dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)","NA","isu;dTDP-rhamnose_synthesis isu;Rhamnose_containing_glycans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2203","peg","scaffold2|size1077242_346974_347765,scaffold2|size1077242_347767_348273",346974,348273,"+","dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)","FIG00000368","isu;dTDP-rhamnose_synthesis isu;Rhamnose_containing_glycans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2204","peg","scaffold2|size1077242_348597_349061",348597,349061,"+","FIG01233159: hypothetical protein","FIG01233156","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2205","peg","scaffold2|size1077242_349217_349095",349217,349095,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2206","peg","scaffold2|size1077242_349239_350513",349239,350513,"+","NAD-specific glutamate dehydrogenase (EC 1.4.1.2)","FIG00011402","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(1);Glutamate_dehydrogenases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2207","peg","scaffold2|size1077242_350740_352287",350740,352287,"+","Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)","FIG00043720","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2208","peg","scaffold2|size1077242_352361_354061",352361,354061,"+","Arginine utilization protein RocB","FIG00016187","idu(1);Arginine_and_Ornithine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2209","peg","scaffold2|size1077242_354058_355473",354058,355473,"+","Arginine permease RocE","FIG00011632","icw(1);Arginine_and_Ornithine_Degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2210","peg","scaffold2|size1077242_355683_356921",355683,356921,"+","FIG01240693: hypothetical protein","FIG01240691","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2211","peg","scaffold2|size1077242_357074_356958",357074,356958,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2212","peg","scaffold2|size1077242_357073_357687",357073,357687,"+","Bacilysin biosynthesis protein BacA; Similarities with prephenate dehydratase","FIG01242984","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2213","peg","scaffold2|size1077242_357677_358384",357677,358384,"+","Bacilysin biosynthesis protein BacB","FIG00810442","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2214","peg","scaffold2|size1077242_358381_359148",358381,359148,"+","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)","FIG00621114","idu(6);CBSS-246196.1.peg.364 idu(6);Fatty_Acid_Biosynthesis_FASII"]
["scaffold2|size1077242","fig|6666666.156949.peg.2215","peg","scaffold2|size1077242_359167_360585",359167,360585,"+","Alanine-anticapsin ligase BacD","FIG01229727","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2216","peg","scaffold2|size1077242_360582_361766",360582,361766,"+","Bacilysin exporter protein BacE","FIG01230501","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2217","peg","scaffold2|size1077242_361767_362966",361767,362966,"+","Aspartate aminotransferase (EC 2.6.1.1)","FIG00719736","idu(7);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(7);Threonine_and_Homoserine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2218","peg","scaffold2|size1077242_363760_362981",363760,362981,"-","Dihydro-4-hydroxyphenylpyruvate reductase (NADH)","FIG01246949","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2219","peg","scaffold2|size1077242_364657_363893",364657,363893,"-","Hemoprotein HemQ, essential component of heme biosynthetic pathway in Gram-positive bacteria","FIG00003629","isu;Heme_and_Siroheme_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2220","peg","scaffold2|size1077242_364928_365899",364928,365899,"+","Phosphate acetyltransferase (EC 2.3.1.8)","FIG00000522","isu;Fermentations:_Lactate isu;Propanediol_utilization isu;Threonine_anaerobic_catabolism_gene_cluster isu;Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate isu;Ethanolamine_utilization isu;Fermentations:_Mixed_acid"]
["scaffold2|size1077242","fig|6666666.156949.peg.2221","peg","scaffold2|size1077242_366045_366944",366045,366944,"+","LysR family transcriptional regulator YeiE","FIG00003701","isu;LysR-family_proteins_in_Escherichia_coli"]
["scaffold2|size1077242","fig|6666666.156949.peg.2222","peg","scaffold2|size1077242_366993_367838",366993,367838,"+","Protein:protein lipoyl transferase","NA","isu;Lipoic_acid_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2223","peg","scaffold2|size1077242_367850_368008",367850,368008,"+","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","icw(1);Queuosine-Archaeosine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2224","peg","scaffold2|size1077242_368005_368895",368005,368895,"+","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","icw(1);Queuosine-Archaeosine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2225","peg","scaffold2|size1077242_369815_369039",369815,369039,"-","Prespore specific transcriptional activator RsfA","FIG01307797","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2226","peg","scaffold2|size1077242_370030_370254",370030,370254,"+","FIG01308914: hypothetical protein YwzC","FIG01308914","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2227","peg","scaffold2|size1077242_370416_371717",370416,371717,"+","dNTP triphosphohydrolase, putative","NA","isu;Purine_conversions isu;dNTP_triphosphohydrolase_protein_family"]
["scaffold2|size1077242","fig|6666666.156949.peg.2228","peg","scaffold2|size1077242_371753_372253",371753,372253,"+","unknown","FIG01966188","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2229","peg","scaffold2|size1077242_372365_372841",372365,372841,"+","Rrf2 family transcriptional regulator","FIG00001408","isu;Rrf2_family_transcriptional_regulators isu;Flagellar_motility"]
["scaffold2|size1077242","fig|6666666.156949.peg.2230","peg","scaffold2|size1077242_372841_374241",372841,374241,"+","Permeases of the major facilitator superfamily","FIG00613966","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2231","peg","scaffold2|size1077242_374321_374476",374321,374476,"+","FIG01228554: hypothetical protein","FIG01449382","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2232","peg","scaffold2|size1077242_375086_377002",375086,377002,"+","Threonyl-tRNA synthetase (EC 6.1.1.3)","FIG00000101","idu(1);tRNA_aminoacylation,_Thr"]
["scaffold2|size1077242","fig|6666666.156949.peg.2233","peg","scaffold2|size1077242_377122_377541",377122,377541,"+","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2234","peg","scaffold2|size1077242_377772_377584",377772,377584,"-","4-oxalocrotonate tautomerase (EC 5.3.2.-)","FIG00010453","isu;Central_meta-cleavage_pathway_of_aromatic_compound_degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2235","peg","scaffold2|size1077242_377881_378540",377881,378540,"+","FIG004556: membrane metalloprotease","FIG00004556","isu;A_cluster_relating_to_Tryptophanyl-tRNA_synthetase"]
["scaffold2|size1077242","fig|6666666.156949.peg.2236","peg","scaffold2|size1077242_378554_379072",378554,379072,"+","hypothetical fig|282458.1.peg.581 homolog","FIG00009692","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2237","peg","scaffold2|size1077242_381441_379366",381441,379366,"-","Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-)","FIG00899307","isu;Peptidoglycan_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2238","peg","scaffold2|size1077242_381644_382474",381644,382474,"+","Spermidine synthase (EC 2.5.1.16)","FIG00000642","isu;Polyamine_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2239","peg","scaffold2|size1077242_382535_383407",382535,383407,"+","Agmatinase (EC 3.5.3.11)","FIG00052802","isu;Arginine_and_Ornithine_Degradation icw(1);Polyamine_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2240","peg","scaffold2|size1077242_383911_383603,scaffold2|size1077242_383599_383438",383911,383438,"-","tRNA proofreading protein STM4549","FIG00009294","isu;tRNA_aminoacylation,_Pro"]
["scaffold2|size1077242","fig|6666666.156949.peg.2241","peg","scaffold2|size1077242_385257_384112",385257,384112,"-","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2242","peg","scaffold2|size1077242_385419_385306",385419,385306,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2243","peg","scaffold2|size1077242_385487_386842",385487,386842,"+","YwhL","FIG01228297","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2244","peg","scaffold2|size1077242_386881_388257",386881,388257,"+","YwhL","FIG01228297","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2245","peg","scaffold2|size1077242_388964_388263",388964,388263,"-","Antilisterial bacteriocin subtilosin biosynthesis protein albG","FIG01229410","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2246","peg","scaffold2|size1077242_390241_388961",390241,388961,"-","FIG009210: peptidase, M16 family","FIG00009210","idu(1);Unspecified_monosaccharide_transport_cluster idu(1);CBSS-257314.1.peg.676"]
["scaffold2|size1077242","fig|6666666.156949.peg.2247","peg","scaffold2|size1077242_391430_390246",391430,390246,"-","FIG01232828: hypothetical protein","FIG01335241","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2248","peg","scaffold2|size1077242_392706_391396",392706,391396,"-","antilisterial bacteriocin (subtilosin) production","FIG01233117","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2249","peg","scaffold2|size1077242_393418_392699",393418,392699,"-","probable transport ATP-binding protein","FIG01229971","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2250","peg","scaffold2|size1077242_393576_393415",393576,393415,"-","antilisterial bacteriocin (subtilosin) production","FIG01233117","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2251","peg","scaffold2|size1077242_394935_393589",394935,393589,"-","Radical SAM domain heme biosynthesis protein","FIG00003587","isu;Heme_biosynthesis_orphans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2252","peg","scaffold2|size1077242_395200_395069",395200,395069,"-","subtilosin A","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2253","peg","scaffold2|size1077242_395512_395940",395512,395940,"+","YwiB","FIG01229925","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2254","peg","scaffold2|size1077242_395937_397607",395937,397607,"+","Arginyl-tRNA synthetase (EC 6.1.1.19)","FIG00000088","isu;tRNA_aminoacylation,_Arg"]
["scaffold2|size1077242","fig|6666666.156949.peg.2255","peg","scaffold2|size1077242_397701_398930",397701,398930,"+","Nitrate/nitrite transporter","FIG00005529","icw(1);Nitrate_and_nitrite_ammonification"]
["scaffold2|size1077242","fig|6666666.156949.peg.2256","peg","scaffold2|size1077242_399029_399745",399029,399745,"+","transcriptional regulator, Crp/Fnr family","FIG00007339","isu;Oxidative_stress"]
["scaffold2|size1077242","fig|6666666.156949.peg.2257","peg","scaffold2|size1077242_400496_399777",400496,399777,"-","membrane protein, putative","FIG00439698","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2258","peg","scaffold2|size1077242_400640_401116",400640,401116,"+","Probable transcription regulator arfM","FIG01337669","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2259","peg","scaffold2|size1077242_401312_404998",401312,404998,"+","Respiratory nitrate reductase alpha chain (EC 1.7.99.4)","FIG00001044","isu;Nitrate_and_nitrite_ammonification isu;Denitrifying_reductase_gene_clusters"]
["scaffold2|size1077242","fig|6666666.156949.peg.2260","peg","scaffold2|size1077242_404988_406451",404988,406451,"+","Respiratory nitrate reductase beta chain (EC 1.7.99.4)","FIG00001035","icw(2);Nitrate_and_nitrite_ammonification icw(3);Denitrifying_reductase_gene_clusters"]
["scaffold2|size1077242","fig|6666666.156949.peg.2261","peg","scaffold2|size1077242_406477_407031",406477,407031,"+","Respiratory nitrate reductase delta chain (EC 1.7.99.4)","FIG00001138","icw(3);Nitrate_and_nitrite_ammonification icw(2);Denitrifying_reductase_gene_clusters"]
["scaffold2|size1077242","fig|6666666.156949.peg.2262","peg","scaffold2|size1077242_407028_407699",407028,407699,"+","Respiratory nitrate reductase gamma chain (EC 1.7.99.4)","FIG00001079","icw(1);Nitrate_and_nitrite_ammonification icw(1);Denitrifying_reductase_gene_clusters"]
["scaffold2|size1077242","fig|6666666.156949.peg.2263","peg","scaffold2|size1077242_408222_409724",408222,409724,"+","Cardiolipin synthetase (EC 2.7.8.-)","FIG00052605","idu(2);Cardiolipin_synthesis idu(2);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold2|size1077242","fig|6666666.156949.peg.2264","peg","scaffold2|size1077242_409813_411540",409813,411540,"+","Uncharacterized ABC transporter ATP-binding protein ywjA","FIG01322223","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2265","peg","scaffold2|size1077242_411550_412074",411550,412074,"+","Dihydrofolate reductase (EC 1.5.1.3)","FIG00000048","idu(2);5-FCL-like_protein idu(2);Folate_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2266","peg","scaffold2|size1077242_412388_412116",412388,412116,"-","YwjC","FIG01236327","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2267","peg","scaffold2|size1077242_413431_412469",413431,412469,"-","UV DNA damage endonuclease (EC 3.-.-.-)","FIG01335423","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2268","peg","scaffold2|size1077242_414640_413444",414640,413444,"-","Cardiolipin synthetase (EC 2.7.8.-)","FIG00052605","idu(2);Cardiolipin_synthesis idu(2);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold2|size1077242","fig|6666666.156949.peg.2269","peg","scaffold2|size1077242_414795_416912",414795,416912,"+","Fe-S oxidoreductase","FIG00687982","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2270","peg","scaffold2|size1077242_416909_418048",416909,418048,"+","Butyryl-CoA dehydrogenase (EC 1.3.99.2)","FIG00009149","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2271","peg","scaffold2|size1077242_418182_418045",418182,418045,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2272","peg","scaffold2|size1077242_418231_418752",418231,418752,"+","DNA-directed RNA polymerase delta subunit (EC 2.7.7.6)","FIG00001543","isu;RNA_polymerase_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2273","peg","scaffold2|size1077242_418994_420601",418994,420601,"+","CTP synthase (EC 6.3.4.2)","FIG00000176","isu;Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster isu;pyrimidine_conversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2274","peg","scaffold2|size1077242_421204_420683",421204,420683,"-","FIG01225390: hypothetical protein","FIG01225389","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2275","peg","scaffold2|size1077242_421370_421744",421370,421744,"+","Sporulation initiation phosphotransferase (Spo0F)","FIG00007369","isu;Sporulation_gene_orphans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2276","peg","scaffold2|size1077242_421925_422782",421925,422782,"+","Fructose-bisphosphate aldolase class II (EC 4.1.2.13)","FIG00000370","icw(1);Calvin-Benson_cycle icw(1);Glycolysis_and_Gluconeogenesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2277","peg","scaffold2|size1077242_422902_423540",422902,423540,"+","Transaldolase (EC 2.2.1.2)","FIG00000023","isu;Pentose_phosphate_pathway isu;Fructose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2278","peg","scaffold2|size1077242_423918_425207",423918,425207,"+","UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)","FIG00034392","idu(1);UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis idu(1);Peptidoglycan_Biosynthesis idu(1);Sporulation-related_Hypotheticals"]
["scaffold2|size1077242","fig|6666666.156949.peg.2279","peg","scaffold2|size1077242_425238_426203",425238,426203,"+","Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)","FIG00138413","isu;Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes isu;Calvin-Benson_cycle isu;Glycolysis_and_Gluconeogenesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2280","peg","scaffold2|size1077242_426418_426579",426418,426579,"+","FIG01239508: hypothetical protein","FIG01239507","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2281","peg","scaffold2|size1077242_426610_427893",426610,427893,"+","Transcription termination factor Rho","FIG00000392","isu;Transcription_factors_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2282","peg","scaffold2|size1077242_428012_428212",428012,428212,"+","LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent","FIG01956156","isu;Ribosome_LSU_bacterial isu;Ribosome_LSU_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2283","peg","scaffold2|size1077242_428301_428888",428301,428888,"+","Thymidine kinase (EC 2.7.1.21)","FIG00000655","idu(1);pyrimidine_conversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2284","peg","scaffold2|size1077242_429178_430875",429178,430875,"+","NAD-dependent malic enzyme (EC 1.1.1.38)","FIG00000835","icw(1);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold2|size1077242","fig|6666666.156949.peg.2285","peg","scaffold2|size1077242_430957_431916",430957,431916,"+","Malate permease","FIG00121768","isu;Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold2|size1077242","fig|6666666.156949.peg.2286","peg","scaffold2|size1077242_432505_431951",432505,431951,"-","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2287","peg","scaffold2|size1077242_433013_432627",433013,432627,"-","FIG01280259: hypothetical protein","FIG01280248","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2288","peg","scaffold2|size1077242_433139_434209",433139,434209,"+","Peptide chain release factor 1","FIG00000188","icw(1);A_Gammaproteobacteria_Cluster_Relating_to_Translation icw(1);CBSS-216600.3.peg.802 icw(1);Translation_termination_factors_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2289","peg","scaffold2|size1077242_434211_435077",434211,435077,"+","Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2","FIG00003217","isu;A_Gammaproteobacteria_Cluster_Relating_to_Translation isu;CBSS-216600.3.peg.802 isu;Translation_termination_factors_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2290","peg","scaffold2|size1077242_435137_435424",435137,435424,"+","Uncharacterized protein ywkF","FIG01227094","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2291","peg","scaffold2|size1077242_435803_435441",435803,435441,"-","FIG01241420: hypothetical protein","FIG01241410","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2292","peg","scaffold2|size1077242_435944_436618",435944,436618,"+","Stage II sporulation protein required for processing of pro-sigma-E (SpoIIR)","FIG00006264","isu;Sporulation_gene_orphans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2293","peg","scaffold2|size1077242_436685_437128",436685,437128,"+","Hypothetical protein ywlB","FIG01321262","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2294","peg","scaffold2|size1077242_437285_438325",437285,438325,"+","TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA","FIG01962633","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2295","peg","scaffold2|size1077242_438404_438961",438404,438961,"+","Hypothetical transmembrane protein ywlD","FIG00140113","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2296","peg","scaffold2|size1077242_439037_439489",439037,439489,"+","Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)","FIG00059124","idu(1);LMPTP_YfkJ_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.2297","peg","scaffold2|size1077242_439491_439649",439491,439649,"+","Ribose 5-phosphate isomerase B (EC 5.3.1.6)","FIG00134342","icw(1);D-ribose_utilization icw(1);Pentose_phosphate_pathway icw(1);Calvin-Benson_cycle"]
["scaffold2|size1077242","fig|6666666.156949.peg.2298","peg","scaffold2|size1077242_439646_440095",439646,440095,"+","Ribose 5-phosphate isomerase B (EC 5.3.1.6)","FIG00134342","icw(1);D-ribose_utilization icw(1);Pentose_phosphate_pathway icw(1);Calvin-Benson_cycle"]
["scaffold2|size1077242","fig|6666666.156949.peg.2299","peg","scaffold2|size1077242_440108_440650",440108,440650,"+","Hypothetical protein ywlG","FIG00121614","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2300","peg","scaffold2|size1077242_440857_442104",440857,442104,"+","Serine hydroxymethyltransferase (EC 2.1.2.1)","FIG00000040","isu;Glycine_Biosynthesis isu;5-FCL-like_protein isu;Serine-glyoxylate_cycle isu;Glycine_and_Serine_Utilization isu;Serine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2301","peg","scaffold2|size1077242_442239_442868",442239,442868,"+","Uracil phosphoribosyltransferase (EC 2.4.2.9)","FIG00000396","idu(1);De_Novo_Pyrimidine_Synthesis idu(1);pyrimidine_conversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2302","peg","scaffold2|size1077242_443291_443674",443291,443674,"+","FIG048548: ATP synthase protein I2","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2303","peg","scaffold2|size1077242_443682_444416",443682,444416,"+","ATP synthase F0 sector subunit a","FIG01959520","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2304","peg","scaffold2|size1077242_444462_444674",444462,444674,"+","ATP synthase F0 sector subunit c (EC 3.6.3.14)","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2305","peg","scaffold2|size1077242_444906_445349",444906,445349,"+","ATP synthase F0 sector subunit b","FIG00000186","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2306","peg","scaffold2|size1077242_445346_445891",445346,445891,"+","ATP synthase delta chain (EC 3.6.3.14)","FIG00000262","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2307","peg","scaffold2|size1077242_445908_447416",445908,447416,"+","ATP synthase alpha chain (EC 3.6.3.14)","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2308","peg","scaffold2|size1077242_447493_448356",447493,448356,"+","ATP synthase gamma chain (EC 3.6.3.14)","FIG00023994","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2309","peg","scaffold2|size1077242_448382_449803",448382,449803,"+","ATP synthase beta chain (EC 3.6.3.14)","FIG00040241","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2310","peg","scaffold2|size1077242_449827_450225",449827,450225,"+","ATP synthase epsilon chain (EC 3.6.3.14)","FIG00000249","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2311","peg","scaffold2|size1077242_450764_450258",450764,450258,"-","Uncharacterized protein ywmA","FIG01231132","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2312","peg","scaffold2|size1077242_450901_451131",450901,451131,"+","FIG01225921: hypothetical protein","FIG01225920","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2313","peg","scaffold2|size1077242_451260_452006",451260,452006,"+","FIG013354: hypothetical protein","FIG00013354","isu;Sporulation-related_Hypotheticals"]
["scaffold2|size1077242","fig|6666666.156949.peg.2314","peg","scaffold2|size1077242_452040_453350",452040,453350,"+","UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)","FIG00034392","idu(1);UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis idu(1);Peptidoglycan_Biosynthesis icw(1);Sporulation-related_Hypotheticals"]
["scaffold2|size1077242","fig|6666666.156949.peg.2315","peg","scaffold2|size1077242_453546_454577",453546,454577,"+","Stage II sporulation protein D (SpoIID)","FIG00014027","isu;Sporulation_Cluster isu;Sporulation_gene_orphans icw(2);Sporulation-related_Hypotheticals"]
["scaffold2|size1077242","fig|6666666.156949.peg.2316","peg","scaffold2|size1077242_454805_454966",454805,454966,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2317","peg","scaffold2|size1077242_454963_455646",454963,455646,"+","D-amino acid dehydrogenase large subunit (EC 1.4.99.1)","FIG00108813","icw(1);Respiratory_dehydrogenases_1"]
["scaffold2|size1077242","fig|6666666.156949.peg.2318","peg","scaffold2|size1077242_455777_455917",455777,455917,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2319","peg","scaffold2|size1077242_455937_456644",455937,456644,"+","D-amino acid dehydrogenase large subunit (EC 1.4.99.1)","FIG00108813","icw(1);Respiratory_dehydrogenases_1"]
["scaffold2|size1077242","fig|6666666.156949.peg.2320","peg","scaffold2|size1077242_456739_456900",456739,456900,"+","Uncharacterized protein ywmE","FIG01236456","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2321","peg","scaffold2|size1077242_457146_457934",457146,457934,"+","Formate dehydrogenase chain D (EC 1.2.1.2)","FIG00000529","isu;Formate_hydrogenase"]
["scaffold2|size1077242","fig|6666666.156949.peg.2322","peg","scaffold2|size1077242_457950_458975",457950,458975,"+","Molybdenum cofactor biosynthesis protein MoaA","FIG00002018","isu;ar-104-EC_Molybdenum_cofactor_biosynthesis_moaABCDE isu;Molybdenum_cofactor_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2323","peg","scaffold2|size1077242_459120_458983",459120,458983,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2324","peg","scaffold2|size1077242_459168_460301",459168,460301,"+","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2325","peg","scaffold2|size1077242_460335_460466",460335,460466,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2326","peg","scaffold2|size1077242_460453_460932",460453,460932,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2327","peg","scaffold2|size1077242_461005_461193",461005,461193,"+","CsbD","FIG01229461","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2328","peg","scaffold2|size1077242_461851_462087",461851,462087,"+","Urea ABC transporter, ATPase protein UrtE","FIG00014348","icw(1);Urea_decomposition"]
["scaffold2|size1077242","fig|6666666.156949.peg.2329","peg","scaffold2|size1077242_462207_462524",462207,462524,"+","Urease gamma subunit (EC 3.5.1.5)","FIG00010604","icw(1);Urease_subunits icw(1);G3E_family_of_P-loop_GTPases_(metallocenter_biosynthesis) icw(2);Urea_decomposition"]
["scaffold2|size1077242","fig|6666666.156949.peg.2330","peg","scaffold2|size1077242_462521_462895",462521,462895,"+","Urease beta subunit (EC 3.5.1.5)","FIG00001042","isu;Urease_subunits isu;G3E_family_of_P-loop_GTPases_(metallocenter_biosynthesis) isu;Urea_decomposition"]
["scaffold2|size1077242","fig|6666666.156949.peg.2331","peg","scaffold2|size1077242_462892_464601",462892,464601,"+","Urease alpha subunit (EC 3.5.1.5)","FIG00002050","icw(2);Urease_subunits icw(2);G3E_family_of_P-loop_GTPases_(metallocenter_biosynthesis) icw(3);Urea_decomposition"]
["scaffold2|size1077242","fig|6666666.156949.peg.2332","peg","scaffold2|size1077242_464736_465137",464736,465137,"+","Rrf2 family transcriptional regulator, group III","FIG00001194","idu(1);Rrf2_family_transcriptional_regulators"]
["scaffold2|size1077242","fig|6666666.156949.peg.2333","peg","scaffold2|size1077242_465205_465846",465205,465846,"+","Rrf2-linked NADH-flavin reductase","FIG01308892","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2334","peg","scaffold2|size1077242_466264_465881",466264,465881,"-","FIG01234579: hypothetical protein","FIG01463526","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2335","peg","scaffold2|size1077242_466409_467182",466409,467182,"+","MerR-family transcriptional regulator","FIG00945261","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2336","peg","scaffold2|size1077242_468654_467206",468654,467206,"-","Cardiolipin synthetase (EC 2.7.8.-)","FIG00052605","idu(2);Cardiolipin_synthesis idu(2);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold2|size1077242","fig|6666666.156949.peg.2337","peg","scaffold2|size1077242_468875_468747",468875,468747,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2338","peg","scaffold2|size1077242_468897_469331",468897,469331,"+","BH1886 unknown conserved protein in B. subtilis","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2339","peg","scaffold2|size1077242_469459_469328",469459,469328,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2340","peg","scaffold2|size1077242_470136_469618",470136,469618,"-","FIG01233216: hypothetical protein","FIG01233211","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2341","peg","scaffold2|size1077242_470630_470133",470630,470133,"-","Phosphinothricin N-acetyltransferase (EC 2.3.1.-)","FIG01325497","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2342","peg","scaffold2|size1077242_470765_471637",470765,471637,"+","Stage II sporulation protein related to metaloproteases (SpoIIQ)","FIG00013347","isu;Sporulation_gene_orphans isu;Sporulation-related_Hypotheticals"]
["scaffold2|size1077242","fig|6666666.156949.peg.2343","peg","scaffold2|size1077242_471748_472170",471748,472170,"+","YwnJ","FIG01234747","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2344","peg","scaffold2|size1077242_472792_472211",472792,472211,"-","Uncharacterized protein ywoA","FIG01243434","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2345","peg","scaffold2|size1077242_473324_472974",473324,472974,"-","Nitrogen regulatory protein P-II","FIG00005111","idu(1);Ammonia_assimilation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2346","peg","scaffold2|size1077242_474550_473336",474550,473336,"-","Ammonium transporter","FIG00004764","icw(1);Ammonia_assimilation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2347","peg","scaffold2|size1077242_474832_475296",474832,475296,"+","FIG01242959: hypothetical protein","FIG01242957","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2348","peg","scaffold2|size1077242_475480_476049",475480,476049,"+","Nicotinamidase/isochorismatase family protein","FIG00025209","isu;NAD_and_NADP_cofactor_biosynthesis_global"]
["scaffold2|size1077242","fig|6666666.156949.peg.2349","peg","scaffold2|size1077242_476049_477407",476049,477407,"+","FIG01236435: hypothetical protein","FIG01236426","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2350","peg","scaffold2|size1077242_477588_479060",477588,479060,"+","Cytosine/purine/uracil/thiamine/allantoin permease family protein","FIG00003506","idu(1);Purine_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2351","peg","scaffold2|size1077242_479164_480570",479164,480570,"+","Pectin lyase like protein","FIG01451709","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2352","peg","scaffold2|size1077242_481842_480652",481842,480652,"-","L-Proline/Glycine betaine transporter ProP","FIG00061305","idu(4);Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2353","peg","scaffold2|size1077242_482277_481864",482277,481864,"-","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2354","peg","scaffold2|size1077242_482627_482908",482627,482908,"+","Stage III sporulation protein D","FIG00015476","isu;Sporulation_gene_orphans isu;Sporulation-related_Hypotheticals"]
["scaffold2|size1077242","fig|6666666.156949.peg.2355","peg","scaffold2|size1077242_483074_484075",483074,484075,"+","MreB-like protein (Mbl protein)","FIG01304734","isu;Bacterial_Cytoskeleton icw(1);Sporulation-related_Hypotheticals"]
["scaffold2|size1077242","fig|6666666.156949.peg.2356","peg","scaffold2|size1077242_484238_485050",484238,485050,"+","Flagellar basal-body rod protein FlgF","FIG00000767","isu;Flagellum"]
["scaffold2|size1077242","fig|6666666.156949.peg.2357","peg","scaffold2|size1077242_485083_485892",485083,485892,"+","Flagellar basal-body rod protein FlgG","FIG00119690","icw(1);Flagellum"]
["scaffold2|size1077242","fig|6666666.156949.peg.2358","peg","scaffold2|size1077242_486979_485915",486979,485915,"-","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2359","peg","scaffold2|size1077242_487171_487596",487171,487596,"+","3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)","FIG00000393","idu(1);Fatty_Acid_Biosynthesis_FASII"]
["scaffold2|size1077242","fig|6666666.156949.peg.2360","peg","scaffold2|size1077242_487597_488064",487597,488064,"+","Large-conductance mechanosensitive channel","FIG00000518","isu;Potassium_homeostasis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2361","peg","scaffold2|size1077242_491197_488111",491197,488111,"-","FIG01228993: hypothetical protein","FIG01228992","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2362","peg","scaffold2|size1077242_491380_492456",491380,492456,"+","two-component response regulator","FIG00627566","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2363","peg","scaffold2|size1077242_492774_498737",492774,498737,"+","Collagen adhesion protein","FIG01225332","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2364","peg","scaffold2|size1077242_498841_499479",498841,499479,"+","Sortase A, LPXTG specific","FIG00007328","isu;Heme,_hemin_uptake_and_utilization_systems_in_GramPositives isu;Sortase"]
["scaffold2|size1077242","fig|6666666.156949.peg.2365","peg","scaffold2|size1077242_499454_499624",499454,499624,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2366","peg","scaffold2|size1077242_500029_499619",500029,499619,"-","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2367","peg","scaffold2|size1077242_500204_500587",500204,500587,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2368","peg","scaffold2|size1077242_500664_501005",500664,501005,"+","Single-stranded DNA-binding protein","FIG00077620","idu(2);DNA_repair,_bacterial idu(2);DNA_repair,_bacterial_RecFOR_pathway idu(2);pVir_Plasmid_of_Campylobacter"]
["scaffold2|size1077242","fig|6666666.156949.peg.2369","peg","scaffold2|size1077242_501350_502006",501350,502006,"+","Glucitol operon repressor","FIG00003289","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2370","peg","scaffold2|size1077242_502012_502869",502012,502869,"+","FIG002540: Haloacid dehalogenase-like hydrolase","FIG01228392","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2371","peg","scaffold2|size1077242_505763_502995",505763,502995,"-","Helicase, SNF2/RAD54 family","FIG01313191","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2372","peg","scaffold2|size1077242_507360_505750",507360,505750,"-","FIG01230320: hypothetical protein","FIG01230318","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2373","peg","scaffold2|size1077242_507471_507500,scaffold2|size1077242_507507_507707",507471,507707,"+","FIG01235110: hypothetical protein","FIG01235107","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2374","peg","scaffold2|size1077242_507941_508687",507941,508687,"+","Tyrosine-protein kinase transmembrane modulator EpsC","FIG00002620","icw(1);Exopolysaccharide_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2375","peg","scaffold2|size1077242_508677_509390",508677,509390,"+","Tyrosine-protein kinase EpsD (EC 2.7.10.2)","FIG00035701","icw(2);Exopolysaccharide_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2376","peg","scaffold2|size1077242_509443_510207",509443,510207,"+","Manganese-dependent protein-tyrosine phosphatase (EC 3.1.3.48)","FIG00002449","isu;Exopolysaccharide_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2377","peg","scaffold2|size1077242_510402_511724",510402,511724,"+","UDP-glucose dehydrogenase (EC 1.1.1.22)","FIG00000532","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2378","peg","scaffold2|size1077242_511924_512709",511924,512709,"+","FIG01228721: hypothetical protein","FIG01228719","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2379","peg","scaffold2|size1077242_512837_512706",512837,512706,"-","FIG01237617: hypothetical protein","FIG01330097","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2380","peg","scaffold2|size1077242_513082_513504",513082,513504,"+","YwqH","FIG01232779","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2381","peg","scaffold2|size1077242_513514_513774",513514,513774,"+","FIG01233922: hypothetical protein","FIG01339156","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2382","peg","scaffold2|size1077242_513793_515658",513793,515658,"+","Putative toxin component near putative ESAT-related proteins, repetitive / Repetitive hypothetical protein near ESAT cluster, SA0282 homolog","FIG00149320","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2383","peg","scaffold2|size1077242_515671_516024",515671,516024,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2384","peg","scaffold2|size1077242_516145_516858",516145,516858,"+","Endonuclease V (EC 3.1.21.7)","FIG00001836","isu;DNA_repair,_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2385","peg","scaffold2|size1077242_517528_516992",517528,516992,"-","Chromate transport protein","FIG00937496","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2386","peg","scaffold2|size1077242_518118_517525",518118,517525,"-","Chromate transport protein","FIG00937496","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2387","peg","scaffold2|size1077242_518608_518132",518608,518132,"-","Transcriptional regulator, AsnC family","FIG01956023","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2388","peg","scaffold2|size1077242_518822_520399",518822,520399,"+","Gamma-glutamyltranspeptidase (EC 2.3.2.2)","FIG00005992","idu(1);Utilization_of_glutathione_as_a_sulphur_source idu(1);Poly-gamma-glutamate_biosynthesis idu(1);Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle"]
["scaffold2|size1077242","fig|6666666.156949.peg.2389","peg","scaffold2|size1077242_520739_520404",520739,520404,"-","FIG01237270: hypothetical protein","FIG01237268","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2390","peg","scaffold2|size1077242_521534_520917",521534,520917,"-","Nitrilotriacetate monooxygenase component B (EC 1.14.13.-)","FIG00039067","isu;Aromatic_Amin_Catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2391","peg","scaffold2|size1077242_522207_521728",522207,521728,"-","Protease III precursor (EC 3.4.24.55)","FIG00002671","isu;DNA_repair,_bacterial_RecBCD_pathway"]
["scaffold2|size1077242","fig|6666666.156949.peg.2392","peg","scaffold2|size1077242_522437_523525",522437,523525,"+","Inner spore coat protein H","FIG00013878","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2393","peg","scaffold2|size1077242_523654_524751",523654,524751,"+","Spore coat protein B","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2394","peg","scaffold2|size1077242_524811_525488",524811,525488,"+","FIG01238299: hypothetical protein","FIG01238295","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2395","peg","scaffold2|size1077242_526852_525545",526852,525545,"-","Arsenic efflux pump protein","FIG00081580","idu(1);Arsenic_resistance"]
["scaffold2|size1077242","fig|6666666.156949.peg.2396","peg","scaffold2|size1077242_527992_527084",527992,527084,"-","LysR family regulatory protein CidR","FIG00001569","idu(1);Murein_hydrolase_regulation_and_cell_death"]
["scaffold2|size1077242","fig|6666666.156949.peg.2397","peg","scaffold2|size1077242_528147_529862",528147,529862,"+","Acetolactate synthase, catabolic (EC 2.2.1.6)","FIG00074916","icw(1);Alpha-acetolactate_operon isu;Acetoin,_butanediol_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2398","peg","scaffold2|size1077242_529924_530691",529924,530691,"+","Alpha-acetolactate decarboxylase (EC 4.1.1.5)","FIG00001396","isu;Alpha-acetolactate_operon icw(1);Acetoin,_butanediol_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2399","peg","scaffold2|size1077242_530790_531317",530790,531317,"+","NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2","FIG00024510","isu;Flavodoxin isu;Flavodoxin"]
["scaffold2|size1077242","fig|6666666.156949.peg.2400","peg","scaffold2|size1077242_531653_531357",531653,531357,"-","FIG01229396: hypothetical protein","FIG01229395","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2401","peg","scaffold2|size1077242_532345_531809",532345,531809,"-","YwsB","FIG01238953","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2402","peg","scaffold2|size1077242_533344_532427",533344,532427,"-","Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)","FIG01962537","isu;D-ribose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2403","peg","scaffold2|size1077242_535808_534330,scaffold2|size1077242_534326_534195",535808,534195,"-","Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)","FIG00018457","isu;D-ribose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2404","peg","scaffold2|size1077242_536219_535824",536219,535824,"-","Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)","FIG00023042","icw(3);D-ribose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2405","peg","scaffold2|size1077242_537064_536216",537064,536216,"-","Ribokinase (EC 2.7.1.15)","FIG00028476","icw(2);D-ribose_utilization isu;Deoxyribose_and_Deoxynucleoside_Catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2406","peg","scaffold2|size1077242_538079_537099",538079,537099,"-","Ribose operon repressor","FIG00024226","icw(1);D-ribose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2407","peg","scaffold2|size1077242_538863_540044",538863,540044,"+","Poly-gamma-glutamate synthase subunit PgsB/CapB (EC 6.3.2.-)","FIG00026758","icw(2);Poly-gamma-glutamate_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2408","peg","scaffold2|size1077242_540059_540508",540059,540508,"+","Poly-gamma-glutamate synthase subunit PgsC/CapC (EC 6.3.2.-)","FIG00030042","isu;Poly-gamma-glutamate_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2409","peg","scaffold2|size1077242_540527_541669",540527,541669,"+","Poly-gamma-glutamate synthase subunit PgsA/CapA (EC 6.3.2.-)","FIG00029792","icw(1);Poly-gamma-glutamate_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2410","peg","scaffold2|size1077242_541684_541851",541684,541851,"+","Poly-gamma-glutamate synthase subunit PgsE/CapE (EC 6.3.2.-)","FIG00028564","icw(4);Poly-gamma-glutamate_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2411","peg","scaffold2|size1077242_541992_543233",541992,543233,"+","Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-), catalyzes PGA release","FIG00144554","icw(3);Poly-gamma-glutamate_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2412","peg","scaffold2|size1077242_544127_543267",544127,543267,"-","hydrolase, haloacid dehalogenase-like family","FIG00672005","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2413","peg","scaffold2|size1077242_545251_544283",545251,544283,"-","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)","FIG00003844","idu(3);Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators"]
["scaffold2|size1077242","fig|6666666.156949.peg.2414","peg","scaffold2|size1077242_545584_546957",545584,546957,"+","Major myo-inositol transporter IolT","FIG00080381","idu(4);Inositol_catabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2415","peg","scaffold2|size1077242_548118_546994",548118,546994,"-","Spore germination protein GerAC, germination response to L-alanine and related amino acids (earliest stage)","FIG00023485","icw(1);Spore_germination"]
["scaffold2|size1077242","fig|6666666.156949.peg.2416","peg","scaffold2|size1077242_549221_548115",549221,548115,"-","probable component of a germinant receptor","FIG01239066","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2417","peg","scaffold2|size1077242_550678_549227",550678,549227,"-","Spore germination protein GerKA","FIG00002489","idu(2);Spore_germination"]
["scaffold2|size1077242","fig|6666666.156949.peg.2418","peg","scaffold2|size1077242_550945_551895",550945,551895,"+","Mannose-6-phosphate isomerase (EC 5.3.1.8)","FIG00598409","idu(2);Mannose_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2419","peg","scaffold2|size1077242_552024_554666",552024,554666,"+","Bifunctional autolysin Atl / N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)/ endo-beta-N-acetylglucosaminidase (EC 3.2.1.96)","FIG01969981","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2420","peg","scaffold2|size1077242_556576_554705",556576,554705,"-","Putative polyribitolphosphotransferase","FIG00016818","isu;Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2421","peg","scaffold2|size1077242_557752_556583",557752,556583,"-","Putative ribitolphosphotransferase (EC 2.7.8.-)","FIG01531582","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2422","peg","scaffold2|size1077242_558781_557756",558781,557756,"-","Xylitol dehydrogenase","FIG01318161","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2423","peg","scaffold2|size1077242_559491_558778",559491,558778,"-","ribitol-5-phosphate cytidylyltransferase (EC 2.7.7.40)","FIG01955557","icw(2);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2424","peg","scaffold2|size1077242_560647_559580",560647,559580,"-","CDP-glycerol: N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenyl glycerophosphotransferase","FIG00002652","icw(4);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2425","peg","scaffold2|size1077242_560648_560845",560648,560845,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2426","peg","scaffold2|size1077242_561600_560827",561600,560827,"-","N-acetylmannosaminyltransferase (EC 2.4.1.187)","FIG00001834","icw(1);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2427","peg","scaffold2|size1077242_562108_562497",562108,562497,"+","Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39)","FIG00035627","isu;Rhamnose_containing_glycans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2428","peg","scaffold2|size1077242_562591_563775",562591,563775,"+","CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)","FIG01955844","icw(5);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2429","peg","scaffold2|size1077242_563799_565139",563799,565139,"+","Minor teichoic acid biosynthesis protein GgaA","FIG00031560","isu;Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2430","peg","scaffold2|size1077242_565265_567967",565265,567967,"+","Minor teichoic acid biosynthesis protein GgaB","FIG00143364","icw(2);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2431","peg","scaffold2|size1077242_568141_568968",568141,568968,"+","Teichoic acid translocation permease protein TagG","FIG00125395","icw(2);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2432","peg","scaffold2|size1077242_568988_570571",568988,570571,"+","Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)","FIG00001824","isu;Rhamnose_containing_glycans icw(4);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2433","peg","scaffold2|size1077242_571494_570610",571494,570610,"-","UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)","FIG00000108","idu(2);Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.2434","peg","scaffold2|size1077242_571829_573196",571829,573196,"+","Poly(glycerol-phosphate) alpha-glucosyltransferase (EC 2.4.1.52)","FIG00139262","icw(1);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2435","peg","scaffold2|size1077242_573231_574751",573231,574751,"+","Poly(glycerol-phosphate) alpha-glucosyltransferase (EC 2.4.1.52)","FIG00139262","icw(1);Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2436","peg","scaffold2|size1077242_574791_576737",574791,576737,"+","glycosyl transferase, family 2","FIG00524602","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2437","peg","scaffold2|size1077242_576760_577902",576760,577902,"+","UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)","FIG00000482","isu;CMP-N-acetylneuraminate_Biosynthesis isu;Sialic_Acid_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2438","peg","scaffold2|size1077242_578862_577942",578862,577942,"-","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)","FIG00003844","idu(3);Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators"]
["scaffold2|size1077242","fig|6666666.156949.peg.2439","peg","scaffold2|size1077242_579075_579398",579075,579398,"+","membrane bound lipoprotein","FIG01231314","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2440","peg","scaffold2|size1077242_579426_581579",579426,581579,"+","N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)","FIG00001385","icw(1);Murein_Hydrolases icw(1);Zinc_regulated_enzymes icw(1);Recycling_of_Peptidoglycan_Amino_Acids"]
["scaffold2|size1077242","fig|6666666.156949.peg.2441","peg","scaffold2|size1077242_581667_583154",581667,583154,"+","N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)","FIG00001385","icw(1);Murein_Hydrolases icw(1);Zinc_regulated_enzymes icw(1);Recycling_of_Peptidoglycan_Amino_Acids"]
["scaffold2|size1077242","fig|6666666.156949.peg.2442","peg","scaffold2|size1077242_583374_585278",583374,585278,"+","glycosyl transferase, family 2","FIG00524602","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2443","peg","scaffold2|size1077242_585513_586172",585513,586172,"+","Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)","FIG00002968","isu;Exopolysaccharide_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2444","peg","scaffold2|size1077242_586228_587679",586228,587679,"+","Teichuronic acid biosynthesis protein TuaB","FIG00136813","icw(1);Teichuronic_acid_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2445","peg","scaffold2|size1077242_587676_588845",587676,588845,"+","Putative teichuronic acid biosynthesis glycosyl transferase TuaC","FIG00119516","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2446","peg","scaffold2|size1077242_588898_590292",588898,590292,"+","UDP-glucose dehydrogenase (EC 1.1.1.22)","FIG00000532","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2447","peg","scaffold2|size1077242_590446_591843",590446,591843,"+","Teichuronic acid biosynthesis protein TuaE, putative secreted polysaccharide polymerase","FIG00405688","icw(1);Teichuronic_acid_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2448","peg","scaffold2|size1077242_591872_592552",591872,592552,"+","Teichuronic acid biosynthesis protein TuaF","FIG00135837","isu;Teichuronic_acid_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2449","peg","scaffold2|size1077242_592576_593334",592576,593334,"+","Putative N-acetylgalactosaminyl-diphosphoundecaprenol glucuronosyltransferase","FIG00106349","icw(2);Teichuronic_acid_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2450","peg","scaffold2|size1077242_593363_594553,scaffold2|size1077242_594557_594640",593363,594640,"+","Putative teichuronic acid biosynthesis glycosyl transferase TuaH","FIG00136725","isu;Teichuronic_acid_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2451","peg","scaffold2|size1077242_594701_595777",594701,595777,"+","Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)","FIG00662416","isu;Methicillin_resistance_in_Staphylococci isu;Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2452","peg","scaffold2|size1077242_597016_595850",597016,595850,"-","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)","FIG00003844","idu(3);Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators"]
["scaffold2|size1077242","fig|6666666.156949.peg.2453","peg","scaffold2|size1077242_597669_597016",597669,597016,"-","FIG000605: protein co-occurring with transport systems (COG1739)","FIG00000605","icw(1);CBSS-224308.1.peg.3555 isu;Transport_system_clustering_with_HemG"]
["scaffold2|size1077242","fig|6666666.156949.peg.2454","peg","scaffold2|size1077242_597886_599043",597886,599043,"+","Sensor protein DegS","FIG00003049","isu;CBSS-224308.1.peg.3555"]
["scaffold2|size1077242","fig|6666666.156949.peg.2455","peg","scaffold2|size1077242_599126_599815",599126,599815,"+","Transcriptional regulator DegU, LuxR family","FIG00007205","icw(2);CBSS-224308.1.peg.3555"]
["scaffold2|size1077242","fig|6666666.156949.peg.2456","peg","scaffold2|size1077242_599913_600758",599913,600758,"+","FIG005590: DegV family protein","FIG00002428","icw(3);CBSS-224308.1.peg.3555"]
["scaffold2|size1077242","fig|6666666.156949.peg.2457","peg","scaffold2|size1077242_600864_602255",600864,602255,"+","ComF operon protein A, DNA transporter ATPase","FIG00010414","isu;Gram_Positive_Competence"]
["scaffold2|size1077242","fig|6666666.156949.peg.2458","peg","scaffold2|size1077242_602315_602611",602315,602611,"+","competence protein FB","FIG01230138","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2459","peg","scaffold2|size1077242_602575_603297",602575,603297,"+","ComF operon protein C","FIG00008752","icw(1);Gram_Positive_Competence"]
["scaffold2|size1077242","fig|6666666.156949.peg.2460","peg","scaffold2|size1077242_603370_603789",603370,603789,"+","flagellar protein","FIG00895279","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2461","peg","scaffold2|size1077242_603870_604136",603870,604136,"+","Negative regulator of flagellin synthesis","FIG00009641","icw(1);Flagellum"]
["scaffold2|size1077242","fig|6666666.156949.peg.2462","peg","scaffold2|size1077242_604152_604634",604152,604634,"+","FIG00672739: hypothetical protein","FIG01227915","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2463","peg","scaffold2|size1077242_604653_606176",604653,606176,"+","Flagellar hook-associated protein FlgK","FIG00000650","isu;Flagellum"]
["scaffold2|size1077242","fig|6666666.156949.peg.2464","peg","scaffold2|size1077242_606205_607083",606205,607083,"+","Flagellar hook-associated protein FlgL","FIG00009398","icw(4);Flagellum"]
["scaffold2|size1077242","fig|6666666.156949.peg.2465","peg","scaffold2|size1077242_607130_607705",607130,607705,"+","FIG01234422: hypothetical protein","FIG01234421","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2466","peg","scaffold2|size1077242_607726_608157",607726,608157,"+","Flagellar assembly factor FliW","FIG00004895","isu;Carbon_storage_regulator"]
["scaffold2|size1077242","fig|6666666.156949.peg.2467","peg","scaffold2|size1077242_608151_608375",608151,608375,"+","Carbon storage regulator","FIG00002453","icw(1);Carbon_storage_regulator isu;Carbon_Starvation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2468","peg","scaffold2|size1077242_608520_609374",608520,609374,"+","Flagellin protein FlaA","FIG00000816","icw(4);Flagellum idu(1);Flagellum_in_Campylobacter"]
["scaffold2|size1077242","fig|6666666.156949.peg.2469","peg","scaffold2|size1077242_609733_609936",609733,609936,"+","Flagellin","FIG00003668","idu(1);Flagellar_motility"]
["scaffold2|size1077242","fig|6666666.156949.peg.2470","peg","scaffold2|size1077242_609954_611450",609954,611450,"+","Flagellar hook-associated protein FliD","FIG00000668","isu;Flagellum"]
["scaffold2|size1077242","fig|6666666.156949.peg.2471","peg","scaffold2|size1077242_611472_611873",611472,611873,"+","Flagellar biosynthesis protein FliS","FIG00000784","icw(1);Flagellum"]
["scaffold2|size1077242","fig|6666666.156949.peg.2472","peg","scaffold2|size1077242_611870_612211",611870,612211,"+","flagellar protein","FIG00895279","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2473","peg","scaffold2|size1077242_612221_612598",612221,612598,"+","FIG01236628: hypothetical protein","FIG01236627","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2474","peg","scaffold2|size1077242_612789_613358",612789,613358,"+","Ribosomal subunit interface protein","FIG00001306","isu;Ribosome_activity_modulation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2475","peg","scaffold2|size1077242_613526_616051",613526,616051,"+","Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)","FIG00034293","icw(2);CBSS-393121.3.peg.2760"]
["scaffold2|size1077242","fig|6666666.156949.peg.2476","peg","scaffold2|size1077242_616239_617222",616239,617222,"+","Peptide chain release factor 2; programmed frameshift-containing","FIG00624891","isu;Programmed_frameshift isu;Programmed_frameshift icw(4);CBSS-393121.3.peg.2760 isu;Translation_termination_factors_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2477","peg","scaffold2|size1077242_617385_618233",617385,618233,"+","hypothetical protein BH3604","FIG00006868","icw(2);CBSS-393121.3.peg.2760"]
["scaffold2|size1077242","fig|6666666.156949.peg.2478","peg","scaffold2|size1077242_618282_618620",618282,618620,"+","Membrane-attached cytochrome c550","FIG00007793","idu(1);Soluble_cytochromes_and_functionally_related_electron_carriers"]
["scaffold2|size1077242","fig|6666666.156949.peg.2479","peg","scaffold2|size1077242_618845_619531",618845,619531,"+","Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)","FIG00002914","idu(1);Bacterial_Cell_Division idu(1);CBSS-393121.3.peg.2760"]
["scaffold2|size1077242","fig|6666666.156949.peg.2480","peg","scaffold2|size1077242_619587_620414",619587,620414,"+","Cell division protein FtsX","FIG00000552","icw(1);Bacterial_Cell_Division icw(1);CBSS-393121.3.peg.2760"]
["scaffold2|size1077242","fig|6666666.156949.peg.2481","peg","scaffold2|size1077242_620554_621996",620554,621996,"+","Carboxyl-terminal protease (EC 3.4.21.102)","FIG00000946","idu(1);CBSS-224911.1.peg.435 idu(1);Phosphoglycerate_mutase_protein_family"]
["scaffold2|size1077242","fig|6666666.156949.peg.2482","peg","scaffold2|size1077242_622398_622733",622398,622733,"+","Swarming motility protein SwrA","FIG01489454","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2483","peg","scaffold2|size1077242_622812_624005",622812,624005,"+","Cell division topological determinant MinJ","FIG00515587","isu;Bacillus_subtilis_scratch_-_gjo"]
["scaffold2|size1077242","fig|6666666.156949.peg.2484","peg","scaffold2|size1077242_625387_624053",625387,624053,"-","putative transmembrane efflux protein","FIG01336429","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2485","peg","scaffold2|size1077242_625987_625418",625987,625418,"-","Transcriptional regulator, TetR family","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2486","peg","scaffold2|size1077242_628558_626066,scaffold2|size1077242_626062_625994",628558,625994,"-","Phosphoenolpyruvate synthase (EC 2.7.9.2)","FIG00000789","idu(1);Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes idu(1);Glycolysis_and_Gluconeogenesis idu(1);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold2|size1077242","fig|6666666.156949.peg.2487","peg","scaffold2|size1077242_629004_629234",629004,629234,"+","FIG01234643: hypothetical protein","FIG01234642","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2488","peg","scaffold2|size1077242_629420_631405",629420,631405,"+","Excinuclease ABC subunit B","FIG00000146","icw(1);DNA_repair,_UvrABC_system"]
["scaffold2|size1077242","fig|6666666.156949.peg.2489","peg","scaffold2|size1077242_631413_634286",631413,634286,"+","Excinuclease ABC subunit A","FIG00000147","isu;DNA_repair,_UvrABC_system"]
["scaffold2|size1077242","fig|6666666.156949.peg.2490","peg","scaffold2|size1077242_634448_634930",634448,634930,"+","Flagellin","FIG00003668","idu(1);Flagellar_motility"]
["scaffold2|size1077242","fig|6666666.156949.peg.2491","peg","scaffold2|size1077242_635359_635129",635359,635129,"-","YvkN","FIG01226908","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2492","peg","scaffold2|size1077242_635577_635903",635577,635903,"+","FIG01231385: hypothetical protein","FIG01231383","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2493","peg","scaffold2|size1077242_635928_637025",635928,637025,"+","Hypothetical protein, homolog of fig|393130.3.peg.2627","FIG00695810","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2494","peg","scaffold2|size1077242_637030_637227",637030,637227,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2495","peg","scaffold2|size1077242_637229_637588",637229,637588,"+","Arginine/ornithine antiporter ArcD","FIG00001166","idu(4);Arginine_and_Ornithine_Degradation idu(4);Arginine_Deiminase_Pathway idu(4);Polyamine_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2496","peg","scaffold2|size1077242_638827_637616",638827,637616,"-","L-Proline/Glycine betaine transporter ProP","FIG00061305","idu(4);Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2497","peg","scaffold2|size1077242_639357_638848",639357,638848,"-","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2498","peg","scaffold2|size1077242_639480_639596",639480,639596,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2499","peg","scaffold2|size1077242_639783_640529",639783,640529,"+","YVMC","FIG01525260","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2500","peg","scaffold2|size1077242_640545_641762",640545,641762,"+","putative cytochrome P450","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2501","peg","scaffold2|size1077242_642262_641801",642262,641801,"-","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2502","peg","scaffold2|size1077242_642427_646296",642427,646296,"+","FIG01229499: hypothetical protein","FIG01229498","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2503","peg","scaffold2|size1077242_647047_646316",647047,646316,"-","Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family","FIG00008348","icw(2);Chitin_and_N-acetylglucosamine_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2504","peg","scaffold2|size1077242_647793_647065",647793,647065,"-","Glucosamine-6-phosphate deaminase (EC 3.5.99.6)","FIG00000645","idu(1);Chitin_and_N-acetylglucosamine_utilization idu(1);Sialic_Acid_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2505","peg","scaffold2|size1077242_648980_647790",648980,647790,"-","N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)","FIG00076542","icw(1);Chitin_and_N-acetylglucosamine_utilization icw(1);Sialic_Acid_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2506","peg","scaffold2|size1077242_649162_650094",649162,650094,"+","HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-)","FIG00004170","isu;HPr_catabolite_repression_system isu;Mannitol_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2507","peg","scaffold2|size1077242_650108_650917",650108,650917,"+","Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)","FIG00000985","isu;Lipoprotein_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2508","peg","scaffold2|size1077242_650941_651879",650941,651879,"+","Nucleoside binding-domain containing protein","FIG00041974","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2509","peg","scaffold2|size1077242_651876_652526",651876,652526,"+","Inorganic pyrophospatase PpaX (EC 3.1.3.18)","FIG01307208","isu;Phosphate_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2510","peg","scaffold2|size1077242_652530_653048",652530,653048,"+","bacterial transferase hexapeptide domain protein","FIG00008566","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2511","peg","scaffold2|size1077242_653733_653068",653733,653068,"-","Secreted pectate lyase HrpW","FIG01383585","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2512","peg","scaffold2|size1077242_654725_653973",654725,653973,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2513","peg","scaffold2|size1077242_654976_656151",654976,656151,"+","ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)","FIG00000865","icw(3);Histidine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2514","peg","scaffold2|size1077242_656144_656785",656144,656785,"+","ATP phosphoribosyltransferase (EC 2.4.2.17)","FIG00000811","icw(6);Histidine_Biosynthesis icw(1);Riboflavin_synthesis_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.2515","peg","scaffold2|size1077242_656782_658065",656782,658065,"+","Histidinol dehydrogenase (EC 1.1.1.23)","FIG00000303","icw(7);Histidine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2516","peg","scaffold2|size1077242_658062_658646",658062,658646,"+","Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)","FIG00000601","icw(3);Histidine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2517","peg","scaffold2|size1077242_658647_659285",658647,659285,"+","Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)","FIG00010738","icw(2);Histidine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2518","peg","scaffold2|size1077242_659282_660019",659282,660019,"+","Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)","FIG00044478","isu;Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. isu;Histidine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2519","peg","scaffold2|size1077242_660016_660774",660016,660774,"+","Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)","FIG00000258","icw(5);Histidine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2520","peg","scaffold2|size1077242_660771_661400",660771,661400,"+","Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)","FIG00000862","icw(1);Histidine_Biosynthesis icw(4);Histidine_Biosynthesis isu;Zinc_regulated_enzymes isu;Riboflavin_synthesis_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.2521","peg","scaffold2|size1077242_661646_662368",661646,662368,"+","FIG01227307: hypothetical protein","FIG01227304","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2522","peg","scaffold2|size1077242_662374_664281",662374,664281,"+","FIG01226220: hypothetical protein","FIG01226218","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2523","peg","scaffold2|size1077242_664296_664655",664296,664655,"+","FIG01248773: hypothetical protein","FIG01248769","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2524","peg","scaffold2|size1077242_664821_666590",664821,666590,"+","Lipid A export ATP-binding/permease protein MsbA","FIG00017059","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2525","peg","scaffold2|size1077242_666716_668170",666716,668170,"+","TPR domain protein","FIG00774028","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2526","peg","scaffold2|size1077242_668551_669960",668551,669960,"+","FIG01230323: hypothetical protein","FIG01230322","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2527","peg","scaffold2|size1077242_670165_671115",670165,671115,"+","Thioredoxin reductase (EC 1.8.1.9)","NA","idu(3);pyrimidine_conversions idu(3);Glycine_reductase,_sarcosine_reductase_and_betaine_reductase idu(3);Thioredoxin-disulfide_reductase"]
["scaffold2|size1077242","fig|6666666.156949.peg.2528","peg","scaffold2|size1077242_671443_671910",671443,671910,"+","Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)","FIG00000892","isu;Nudix_proteins_(nucleoside_triphosphate_hydrolases)"]
["scaffold2|size1077242","fig|6666666.156949.peg.2529","peg","scaffold2|size1077242_671935_672822",671935,672822,"+","Hypothetical ATP-binding protein UPF0042, contains P-loop","FIG00229225","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2530","peg","scaffold2|size1077242_672782_673777",672782,673777,"+","FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like","FIG00002813","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2531","peg","scaffold2|size1077242_673800_674750",673800,674750,"+","FIG001886: Cytoplasmic hypothetical protein","FIG00629453","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2532","peg","scaffold2|size1077242_674774_675031",674774,675031,"+","Catabolite repression HPr-like protein Crh","FIG00005308","isu;HPr_catabolite_repression_system"]
["scaffold2|size1077242","fig|6666666.156949.peg.2533","peg","scaffold2|size1077242_675041_675796",675041,675796,"+","N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118)","FIG01308494","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2534","peg","scaffold2|size1077242_676041_675832",676041,675832,"-","FIG01240226: hypothetical protein","FIG01240225","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2535","peg","scaffold2|size1077242_676188_676901",676188,676901,"+","Two-component response regulator YvcP","FIG00147825","idu(1);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2536","peg","scaffold2|size1077242_676895_677965",676895,677965,"+","Two-component sensor kinase YvcQ","FIG00032907","icw(2);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2537","peg","scaffold2|size1077242_678048_678827",678048,678827,"+","ABC transporter ATP-binding protein YvcR","FIG00007923","icw(1);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2538","peg","scaffold2|size1077242_678802_680742",678802,680742,"+","ABC transporter permease protein YvcS","FIG00011613","icw(3);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2539","peg","scaffold2|size1077242_681754_680780",681754,680780,"-","Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81)","FIG00133864","isu;Glycolate,_glyoxylate_interconversions isu;Glycolate,_glyoxylate_interconversions isu;Glycolate,_glyoxylate_interconversions idu(1);Glycerate_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2540","peg","scaffold2|size1077242_682150_682734",682150,682734,"+","Carbonic anhydrase (EC 4.2.1.1)","FIG00023019","idu(2);Zinc_regulated_enzymes"]
["scaffold2|size1077242","fig|6666666.156949.peg.2541","peg","scaffold2|size1077242_682753_684345",682753,684345,"+","Sulfate permease","FIG00005216","idu(1);Cysteine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2542","peg","scaffold2|size1077242_684692_684372",684692,684372,"-","MazG related NTP pyrophosphohydrolase","FIG01309353","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2543","peg","scaffold2|size1077242_684809_685384",684809,685384,"+","Lysine decarboxylase family","FIG01349038","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2544","peg","scaffold2|size1077242_685589_686539",685589,686539,"+","Maltose operon transcriptional repressor MalR, LacI family","FIG00008778","isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2545","peg","scaffold2|size1077242_686652_688421",686652,688421,"+","Neopullulanase (EC 3.2.1.135)","FIG00066643","icw(4);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2546","peg","scaffold2|size1077242_688517_689770",688517,689770,"+","Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE","FIG00002265","icw(3);Maltose_and_Maltodextrin_Utilization idu(1);Alpha-Amylase_locus_in_Streptocococcus idu(1);Bacterial_Chemotaxis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2547","peg","scaffold2|size1077242_689810_691117",689810,691117,"+","Maltose/maltodextrin ABC transporter, permease protein MalF","FIG00019868","icw(2);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2548","peg","scaffold2|size1077242_691118_691954",691118,691954,"+","Maltose/maltodextrin ABC transporter, permease protein MalG","FIG00007714","icw(6);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2549","peg","scaffold2|size1077242_691960_692844",691960,692844,"+","Maltodextrose utilization protein MalA","FIG00003824","isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2550","peg","scaffold2|size1077242_692822_695095",692822,695095,"+","Maltose phosphorylase (EC 2.4.1.8)","FIG00136138","icw(4);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2551","peg","scaffold2|size1077242_695088_696773",695088,696773,"+","Neopullulanase (EC 3.2.1.135)","FIG00066643","icw(1);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2552","peg","scaffold2|size1077242_696770_697444",696770,697444,"+","Beta-phosphoglucomutase (EC 5.4.2.6)","FIG01960938","isu;N-Acetyl-Galactosamine_and_Galactosamine_Utilization isu;Trehalose_Uptake_and_Utilization icw(3);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2553","peg","scaffold2|size1077242_698082_697489",698082,697489,"-","ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)","FIG00000028","isu;Proteolysis_in_bacteria,_ATP-dependent isu;cAMP_signaling_in_bacteria isu;Proteasome_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.rna.49","rna","scaffold2|size1077242_698353_698428",698353,698428,"+","tRNA-Arg-CCG","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2554","peg","scaffold2|size1077242_698584_699096",698584,699096,"+","FIG01243825: hypothetical protein","FIG01547865","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2555","peg","scaffold2|size1077242_699452_699132",699452,699132,"-","Quaternary ammonium compound-resistance protein SugE","FIG00948922","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2556","peg","scaffold2|size1077242_699787_699452",699787,699452,"-","Quaternary ammonium compound-resistance protein SugE","FIG00948922","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2557","peg","scaffold2|size1077242_700454_699870",700454,699870,"-","TetR family transcriptional regulator Bsu YvdT","FIG01968118","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2558","peg","scaffold2|size1077242_702111_700549",702111,700549,"-","Amino acid permease in 4-hydroxyproline catabolic gene cluster","NA","isu;Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2559","peg","scaffold2|size1077242_703769_702219",703769,702219,"-","Levanase (EC 3.2.1.65)","FIG01243735","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2560","peg","scaffold2|size1077242_705264_703843",705264,703843,"-","Levansucrase (EC 2.4.1.10)","FIG01397144","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2561","peg","scaffold2|size1077242_705766_705894",705766,705894,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2562","peg","scaffold2|size1077242_706060_706494",706060,706494,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2563","peg","scaffold2|size1077242_706643_707998",706643,707998,"+","D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","FIG00561498","idu(5);Murein_Hydrolases idu(5);Peptidoglycan_Biosynthesis idu(5);CBSS-84588.1.peg.1247 idu(5);Metallocarboxypeptidases_(EC_3.4.17.-)"]
["scaffold2|size1077242","fig|6666666.156949.peg.2564","peg","scaffold2|size1077242_708014_708697",708014,708697,"+","Amino acid racemase RacX","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2565","peg","scaffold2|size1077242_708829_709284",708829,709284,"+","UPF0311 protein BSU34410","FIG01247064","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2566","peg","scaffold2|size1077242_709307_709792",709307,709792,"+","Phenolic acid decarboxylase (EC 4.1.1.-)","FIG00023936","isu;CBSS-1352.1.peg.856"]
["scaffold2|size1077242","fig|6666666.156949.peg.2567","peg","scaffold2|size1077242_710010_709819",710010,709819,"-","FIG01227816: hypothetical protein","FIG01227814","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2568","peg","scaffold2|size1077242_711482_710013",711482,710013,"-","para-nitrobenzyl esterase (intracellular esterase B)","FIG01434961","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2569","peg","scaffold2|size1077242_712016_711558",712016,711558,"-","Slr, positive regulator of the extracellular matrix biosynthesis operon yqxM-sipW-tasA","FIG00144499","isu;Bacillus_biofilm_matrix_protein_component_TasA_and_homologs"]
["scaffold2|size1077242","fig|6666666.156949.peg.2570","peg","scaffold2|size1077242_712262_712966",712262,712966,"+","Tyrosine-protein kinase transmembrane modulator EpsC","FIG00002620","idu(1);Exopolysaccharide_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2571","peg","scaffold2|size1077242_712972_713652",712972,713652,"+","Tyrosine-protein kinase EpsD (EC 2.7.10.2)","FIG00035701","icw(1);Exopolysaccharide_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2572","peg","scaffold2|size1077242_713911_715707",713911,715707,"+","UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)","FIG00003715","idu(1);N-linked_Glycosylation_in_Bacteria"]
["scaffold2|size1077242","fig|6666666.156949.peg.2573","peg","scaffold2|size1077242_715719_716864",715719,716864,"+","Glycosyltransferase","FIG00007960","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2574","peg","scaffold2|size1077242_716861_717697",716861,717697,"+","glycosyltransferase","FIG01323491","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2575","peg","scaffold2|size1077242_717690_718844",717690,718844,"+","capsular polysaccharide biosynthesis protein","FIG00031969","icw(1);Rhamnose_containing_glycans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2576","peg","scaffold2|size1077242_718841_719944",718841,719944,"+","capsular polysaccharide biosynthesis protein","FIG00031969","icw(1);Rhamnose_containing_glycans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2577","peg","scaffold2|size1077242_719969_721003",719969,721003,"+","Glycosyl transferase, group 2 family protein","FIG00003788","idu(1);Exopolysaccharide_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2578","peg","scaffold2|size1077242_721008_722084",721008,722084,"+","COG5039: Exopolysaccharide biosynthesis protein","FIG01324362","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2579","peg","scaffold2|size1077242_722081_723115",722081,723115,"+","glycosyl transferase, family 2","FIG00524602","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2580","peg","scaffold2|size1077242_723181_724629",723181,724629,"+","Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids","FIG01970683","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2581","peg","scaffold2|size1077242_724626_725234",724626,725234,"+","Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-)","FIG01955850","isu;N-linked_Glycosylation_in_Bacteria"]
["scaffold2|size1077242","fig|6666666.156949.peg.2582","peg","scaffold2|size1077242_725231_725881",725231,725881,"+","PhnO protein","FIG00004587","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2583","peg","scaffold2|size1077242_725886_727052",725886,727052,"+","Lipopolysaccharide biosynthesis protein RffA","FIG00002354","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2584","peg","scaffold2|size1077242_727031_727999",727031,727999,"+","Polysaccharide polymerization protein","FIG01342735","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2585","peg","scaffold2|size1077242_728227_728009",728227,728009,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2586","peg","scaffold2|size1077242_728304_728185",728304,728185,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2587","peg","scaffold2|size1077242_728303_729616",728303,729616,"+","RNA polymerase sigma-54 factor RpoN","FIG00006092","isu;CBSS-316057.3.peg.1308 isu;Flagellar_motility isu;Flagellum isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold2|size1077242","fig|6666666.156949.peg.2588","peg","scaffold2|size1077242_731334_729643",731334,729643,"-","L-lactate permease","FIG00016061","idu(1);Lactate_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2589","peg","scaffold2|size1077242_731562_732284",731562,732284,"+","Lactate-responsive regulator LldR in Firmicutes, GntR family","FIG00012468","icw(1);Lactate_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2590","peg","scaffold2|size1077242_732464_733462",732464,733462,"+","Galactose operon repressor, GalR-LacI family of transcriptional regulators","FIG00003129","isu;Lactose_and_Galactose_Uptake_and_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2591","peg","scaffold2|size1077242_733598_734863",733598,734863,"+","Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE","FIG00002265","icw(1);Maltose_and_Maltodextrin_Utilization idu(1);Alpha-Amylase_locus_in_Streptocococcus idu(1);Bacterial_Chemotaxis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2592","peg","scaffold2|size1077242_734903_736159",734903,736159,"+","Maltose/maltodextrin ABC transporter, permease protein MalF","FIG00019868","idu(1);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2593","peg","scaffold2|size1077242_736163_737014",736163,737014,"+","Maltose/maltodextrin ABC transporter, permease protein MalG","FIG00007714","icw(2);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2594","peg","scaffold2|size1077242_737036_739096",737036,739096,"+","Beta-galactosidase (EC 3.2.1.23)","FIG00001548","idu(1);Lactose_and_Galactose_Uptake_and_Utilization idu(1);Galactosylceramide_and_Sulfatide_metabolism idu(1);Lactose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2595","peg","scaffold2|size1077242_739101_740465",739101,740465,"+","Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)","FIG00013499","icw(1);Lactose_and_Galactose_Uptake_and_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2596","peg","scaffold2|size1077242_741730_740519",741730,740519,"-","Serine phosphatase RsbU, regulator of sigma subunit","FIG00017431","idu(1);SigmaB_stress_responce_regulation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2597","peg","scaffold2|size1077242_742575_741766",742575,741766,"-","alpha/beta hydrolase fold","FIG00945144","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2598","peg","scaffold2|size1077242_742863_743765",742863,743765,"+","Methionine ABC transporter ATP-binding protein","FIG00006151","idu(2);Methionine_Degradation idu(2);Methionine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2599","peg","scaffold2|size1077242_743766_744503",743766,744503,"+","ABC-type multidrug transport system, permease component","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2600","peg","scaffold2|size1077242_744507_745622",744507,745622,"+","sensor histidine kinase","FIG00431356","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2601","peg","scaffold2|size1077242_745639_746241",745639,746241,"+","Two-component response regulator","FIG01962128","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2602","peg","scaffold2|size1077242_746416_747132",746416,747132,"+","Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE","FIG00000926","icw(2);Lactate_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2603","peg","scaffold2|size1077242_747159_748598",747159,748598,"+","Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF","FIG00138298","isu;Lactate_utilization isu;L-rhamnose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2604","peg","scaffold2|size1077242_748598_749320",748598,749320,"+","Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG","FIG00138308","icw(1);Lactate_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2605","peg","scaffold2|size1077242_749428_750462",749428,750462,"+","Putative peptidoglycan hydrolase YvbX, NOT involved in spore germination","FIG00144020","isu;Spore_germination"]
["scaffold2|size1077242","fig|6666666.156949.peg.2606","peg","scaffold2|size1077242_750864_752207",750864,752207,"+","D-serine/D-alanine/glycine transporter","FIG00003984","idu(2);Glycine_and_Serine_Utilization idu(2);Pyruvate_Alanine_Serine_Interconversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2607","peg","scaffold2|size1077242_753165_752248",753165,752248,"-","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","idu(11);Queuosine-Archaeosine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2608","peg","scaffold2|size1077242_753265_754143",753265,754143,"+","LysR family transcriptional regulator STM2281","FIG00011906","idu(1);LysR-family_proteins_in_Salmonella_enterica_Typhimurium"]
["scaffold2|size1077242","fig|6666666.156949.peg.2609","peg","scaffold2|size1077242_754300_755310",754300,755310,"+","Luciferase-like monooxygenase (EC 1.14.-.-)","FIG00554275","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2610","peg","scaffold2|size1077242_756447_755359",756447,755359,"-","Transcriptional repressor of arabinoside utilization operon, GntR family","FIG00011814","icw(1);L-Arabinose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2611","peg","scaffold2|size1077242_756651_758045",756651,758045,"+","Arabinose-proton symporter","FIG00002070","isu;L-Arabinose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2612","peg","scaffold2|size1077242_758343_759365",758343,759365,"+","Central glycolytic genes regulator","FIG00630356","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2613","peg","scaffold2|size1077242_759412_760419",759412,760419,"+","NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)","FIG00132586","isu;Pyridoxin_(Vitamin_B6)_Biosynthesis icw(2);Entner-Doudoroff_Pathway icw(1);Calvin-Benson_cycle isu;Redox-dependent_regulation_of_nucleus_processes icw(3);Glycolysis_and_Gluconeogenesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2614","peg","scaffold2|size1077242_760736_761920",760736,761920,"+","Phosphoglycerate kinase (EC 2.7.2.3)","FIG00054459","icw(3);Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes icw(1);Entner-Doudoroff_Pathway icw(2);Calvin-Benson_cycle icw(2);Glycolysis_and_Gluconeogenesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2615","peg","scaffold2|size1077242_761951_762712",761951,762712,"+","Triosephosphate isomerase (EC 5.3.1.1)","FIG00000076","isu;Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes isu;Calvin-Benson_cycle isu;Glycolysis_and_Gluconeogenesis isu;CBSS-331978.3.peg.2915"]
["scaffold2|size1077242","fig|6666666.156949.peg.2616","peg","scaffold2|size1077242_762705_764240",762705,764240,"+","2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)","FIG00000624","icw(1);Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes isu;Entner-Doudoroff_Pathway isu;Phosphoglycerate_mutase_protein_family icw(1);Glycolysis_and_Gluconeogenesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2617","peg","scaffold2|size1077242_764270_765562",764270,765562,"+","Enolase (EC 4.2.1.11)","FIG00000118","icw(2);Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes isu;Serine-glyoxylate_cycle icw(2);Entner-Doudoroff_Pathway icw(3);Glycolysis_and_Gluconeogenesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2618","peg","scaffold2|size1077242_766066_765605",766066,765605,"-","FIG01230958: hypothetical protein","FIG01230956","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2619","peg","scaffold2|size1077242_766192_768009",766192,768009,"+","FIG01230239: hypothetical protein","FIG01230238","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2620","peg","scaffold2|size1077242_768743_768045",768743,768045,"-","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2621","peg","scaffold2|size1077242_769489_768875",769489,768875,"-","FIG017263: hypothetical protein","FIG01249358","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2622","peg","scaffold2|size1077242_769642_770274",769642,770274,"+","Multiple antibiotic resistance protein marC","FIG01067880","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2623","peg","scaffold2|size1077242_770849_770292",770849,770292,"-","portion of orf between proU operon and 181 operon","FIG01229794","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2624","peg","scaffold2|size1077242_771104_772255",771104,772255,"+","Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA","FIG00008286","icw(1);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2625","peg","scaffold2|size1077242_772278_772931",772278,772931,"+","Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB","FIG00008161","icw(1);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2626","peg","scaffold2|size1077242_772945_773862",772945,773862,"+","Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC","FIG00008264","icw(5);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2627","peg","scaffold2|size1077242_773880_774554",773880,774554,"+","Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD","NA","icw(4);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2628","peg","scaffold2|size1077242_775119_774586",775119,774586,"-","portion of orf between proU operon and 181 operon","FIG01229794","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2629","peg","scaffold2|size1077242_775403_776548",775403,776548,"+","Choline ABC transport system, ATP-binding protein OpuBA","FIG00145874","icw(7);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2630","peg","scaffold2|size1077242_776565_777218",776565,777218,"+","Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB","FIG00008161","icw(1);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2631","peg","scaffold2|size1077242_777230_778150",777230,778150,"+","Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC","FIG00008264","icw(4);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2632","peg","scaffold2|size1077242_778167_778844",778167,778844,"+","Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD","FIG01961615","icw(2);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2633","peg","scaffold2|size1077242_779058_782150",779058,782150,"+","Lanthionine biosynthesis protein LanB","FIG00479660","icw(1);Lanthionine_Synthetases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2634","peg","scaffold2|size1077242_782141_783985",782141,783985,"+","Subtilin transport ATP-binding protein spaT","FIG01343993","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2635","peg","scaffold2|size1077242_783958_785283",783958,785283,"+","Lanthionine biosynthesis cyclase LanC","FIG00661942","isu;Lanthionine_Synthetases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2636","peg","scaffold2|size1077242_786045_786536",786045,786536,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2637","peg","scaffold2|size1077242_786550_787266",786550,787266,"+","putative ABC transporter, ATP-binding protein MutF","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2638","peg","scaffold2|size1077242_787263_788018",787263,788018,"+","Lantibiotic ABC transporter","FIG01227167","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2639","peg","scaffold2|size1077242_788020_788784",788020,788784,"+","Lantibiotic transport permease protein","FIG00514233","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2640","peg","scaffold2|size1077242_788802_789464",788802,789464,"+","Two-component response regulator","FIG01962128","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2641","peg","scaffold2|size1077242_789455_790837",789455,790837,"+","two-component sensor histidine kinase","FIG00516172","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2642","peg","scaffold2|size1077242_792568_790868",792568,790868,"-","methyl-accepting chemotaxis protein","FIG01251342","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2643","peg","scaffold2|size1077242_793023_792697",793023,792697,"-","Transcriptional regulator, HxlR family","FIG00906075","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2644","peg","scaffold2|size1077242_793534_793115",793534,793115,"-","YVAO protein","FIG01226406","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2645","peg","scaffold2|size1077242_793971_793564",793971,793564,"-","YVAO protein","FIG01226406","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2646","peg","scaffold2|size1077242_794171_794356",794171,794356,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2647","peg","scaffold2|size1077242_795166_794396",795166,794396,"-","alpha/beta hydrolase fold","FIG00945144","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2648","peg","scaffold2|size1077242_795315_795545",795315,795545,"+","Preprotein translocase subunit SecG (TC 3.A.5.1.1)","FIG00001563","isu;Murein_hydrolase_regulation_and_cell_death isu;CBSS-331978.3.peg.2915"]
["scaffold2|size1077242","fig|6666666.156949.peg.2649","peg","scaffold2|size1077242_795677_796417",795677,796417,"+","Carboxylesterase (EC 3.1.1.1)","FIG01225679","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2650","peg","scaffold2|size1077242_796436_798775",796436,798775,"+","3'-to-5' exoribonuclease RNase R","FIG00000308","isu;RNA_processing_and_degradation,_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2651","peg","scaffold2|size1077242_798920_799390",798920,799390,"+","tmRNA-binding protein SmpB","FIG00000194","isu;Heat_shock_dnaK_gene_cluster_extended isu;Staphylococcal_pathogenicity_islands_SaPI isu;Translation_termination_factors_bacterial"]
["scaffold2|size1077242","fig|6666666.156949.peg.2652","peg","scaffold2|size1077242_800551_801030",800551,801030,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2653","peg","scaffold2|size1077242_801294_801064",801294,801064,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2654","peg","scaffold2|size1077242_801790_801912",801790,801912,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2655","peg","scaffold2|size1077242_802379_803173",802379,803173,"+","oxidoreductase, short chain dehydrogenase/reductase family","FIG01345757","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2656","peg","scaffold2|size1077242_803283_803855",803283,803855,"+","Transcriptional regulator, TetR family","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2657","peg","scaffold2|size1077242_803852_804211",803852,804211,"+","Ethidium bromide-methyl viologen resistance protein EmrE","FIG01312131","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2658","peg","scaffold2|size1077242_804208_804609",804208,804609,"+","conserved hypothetical protein","FIG00629156","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2659","peg","scaffold2|size1077242_804775_806670",804775,806670,"+","putative integral membrane protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2660","peg","scaffold2|size1077242_806829_807464",806829,807464,"+","FMN-dependent NADH-azoreductase","FIG00553659","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2661","peg","scaffold2|size1077242_808547_807501",808547,807501,"-","Nucleoside-diphosphate-sugar epimerases","FIG00002924","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2662","peg","scaffold2|size1077242_808705_809010",808705,809010,"+","Repressor CsoR of the copZA operon","FIG00542498","icw(3);Copper_Transport_System"]
["scaffold2|size1077242","fig|6666666.156949.peg.2663","peg","scaffold2|size1077242_809086_809295",809086,809295,"+","Copper(I) chaperone CopZ","FIG00010851","isu;Copper_Transport_System"]
["scaffold2|size1077242","fig|6666666.156949.peg.2664","peg","scaffold2|size1077242_809376_811994",809376,811994,"+","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)","NA","icw(1);Copper_homeostasis icw(2);Copper_Transport_System"]
["scaffold2|size1077242","fig|6666666.156949.peg.2665","peg","scaffold2|size1077242_812164_814263",812164,814263,"+","Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)","NA","icw(1);Copper_homeostasis icw(2);Copper_Transport_System"]
["scaffold2|size1077242","fig|6666666.156949.peg.2666","peg","scaffold2|size1077242_814383_815051",814383,815051,"+","Periplasmic thiol:disulfide interchange protein DsbA","FIG00013811","isu;Biogenesis_of_c-type_cytochromes isu;Periplasmic_disulfide_interchange"]
["scaffold2|size1077242","fig|6666666.156949.peg.2667","peg","scaffold2|size1077242_815058_815474",815058,815474,"+","Disulfide bond formation protein BdbC, competence-related","FIG01352920","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2668","peg","scaffold2|size1077242_815574_815440",815574,815440,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2669","peg","scaffold2|size1077242_815661_816272",815661,816272,"+","membrane protein, putative","FIG00439698","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2670","peg","scaffold2|size1077242_816597_816376",816597,816376,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2671","peg","scaffold2|size1077242_817072_817197",817072,817197,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2672","peg","scaffold2|size1077242_817389_819713",817389,819713,"+","ATP-dependent DNA helicase rep (EC 3.6.1.-)","FIG01321766","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2673","peg","scaffold2|size1077242_819884_821701",819884,821701,"+","Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)","FIG00001318","icw(1);Cysteine_Biosynthesis icw(1);Inorganic_Sulfur_Assimilation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2674","peg","scaffold2|size1077242_821727_823442",821727,823442,"+","Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)","FIG00000760","isu;Cysteine_Biosynthesis isu;Inorganic_Sulfur_Assimilation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2675","peg","scaffold2|size1077242_823697_825709",823697,825709,"+","Na+/H+ antiporter","FIG00008246","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2676","peg","scaffold2|size1077242_826238_825753",826238,825753,"-","FIG01232426: hypothetical protein","FIG01232425","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2677","peg","scaffold2|size1077242_826509_827291",826509,827291,"+","oxidoreductase of aldo/keto reductase family, subgroup 1","FIG01239241","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2678","peg","scaffold2|size1077242_828005_827322",828005,827322,"-","Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)","FIG00002718","isu;Molybdenum_cofactor_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2679","peg","scaffold2|size1077242_828768_827986",828768,827986,"-","Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)","FIG00021644","icw(1);Molybdenum_cofactor_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2680","peg","scaffold2|size1077242_831686_829836,scaffold2|size1077242_829832_829755",831686,829755,"-","Lipoteichoic acid synthase LtaS Type IIIa","FIG00014878","idu(1);Polyglycerolphosphate_lipoteichoic_acid_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2681","peg","scaffold2|size1077242_832270_831788",832270,831788,"-","FIG01225812: hypothetical protein","FIG01225811","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2682","peg","scaffold2|size1077242_832437_832577",832437,832577,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2683","peg","scaffold2|size1077242_832977_834386",832977,834386,"+","Arginine/ornithine antiporter ArcD","FIG00001166","idu(4);Arginine_and_Ornithine_Degradation idu(4);Arginine_Deiminase_Pathway idu(4);Polyamine_Metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2684","peg","scaffold2|size1077242_835537_834593,scaffold2|size1077242_834589_834536",835537,834536,"-","Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)","FIG00513154","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2685","peg","scaffold2|size1077242_835591_836790",835591,836790,"+","ABC-type Fe3+-siderophore transport system, permease component","FIG00696717","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2686","peg","scaffold2|size1077242_836790_837800",836790,837800,"+","ABC-type Fe3+-siderophore transport system, permease 2 component","FIG00007866","idu(1);Flavohaemoglobin"]
["scaffold2|size1077242","fig|6666666.156949.peg.2687","peg","scaffold2|size1077242_837816_838625",837816,838625,"+","Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)","FIG01304275","idu(1);Heme,_hemin_uptake_and_utilization_systems_in_GramNegatives"]
["scaffold2|size1077242","fig|6666666.156949.peg.2688","peg","scaffold2|size1077242_838796_839989",838796,839989,"+","periplasmic component of efflux system","FIG00671350","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2689","peg","scaffold2|size1077242_839973_840662",839973,840662,"+","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2690","peg","scaffold2|size1077242_840655_841884",840655,841884,"+","Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-)","FIG00001667","isu;Multidrug_Resistance_Efflux_Pumps"]
["scaffold2|size1077242","fig|6666666.156949.peg.2691","peg","scaffold2|size1077242_842328_841918",842328,841918,"-","FIG01228327: hypothetical protein","FIG01228326","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2692","peg","scaffold2|size1077242_843546_842389",843546,842389,"-","Oxalate decarboxylase (EC 4.1.1.2)","FIG01323605","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2693","peg","scaffold2|size1077242_843652_843530",843652,843530,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2694","peg","scaffold2|size1077242_843819_843667",843819,843667,"-","FIG01238344: hypothetical protein","FIG01238343","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2695","peg","scaffold2|size1077242_843979_844551",843979,844551,"+","RNA polymerase sigma factor","FIG01970010","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2696","peg","scaffold2|size1077242_844555_844791,scaffold2|size1077242_844795_844893,scaffold2|size1077242_844897_844902,scaffold2|size1077242_844912_844917,scaffold2|size1077242_844917_845660",844555,845660,"+","Phosphate regulon transcriptional regulatory protein PhoB (SphR)","FIG01290653","isu;PhoR-PhoB_two-component_regulatory_system isu;High_affinity_phosphate_transporter_and_control_of_PHO_regulon isu;Phosphate_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2697","peg","scaffold2|size1077242_845678_847399",845678,847399,"+","sensor histidine kinase","FIG00431356","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2698","peg","scaffold2|size1077242_847471_848349",847471,848349,"+","Gluconolactonase (EC 3.1.1.17)","FIG00127296","isu;Entner-Doudoroff_Pathway"]
["scaffold2|size1077242","fig|6666666.156949.peg.2699","peg","scaffold2|size1077242_849179_848388",849179,848388,"-","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)","FIG00621114","idu(6);CBSS-246196.1.peg.364 idu(6);Fatty_Acid_Biosynthesis_FASII"]
["scaffold2|size1077242","fig|6666666.156949.peg.2700","peg","scaffold2|size1077242_849468_849319",849468,849319,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2701","peg","scaffold2|size1077242_849577_850521",849577,850521,"+","Vitamin B12 ABC transporter, B12-binding component BtuF","FIG00016684","icw(2);Coenzyme_B12_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2702","peg","scaffold2|size1077242_850562_851545",850562,851545,"+","Vitamin B12 ABC transporter, permease component BtuC","FIG00003124","icw(1);Coenzyme_B12_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2703","peg","scaffold2|size1077242_851542_852873",851542,852873,"+","Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90)","FIG00083321","isu;Coenzyme_B12_biosynthesis icw(1);Coenzyme_B12_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2704","peg","scaffold2|size1077242_852896_853477",852896,853477,"+","ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17)","FIG00001045","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2705","peg","scaffold2|size1077242_853481_853612",853481,853612,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2706","peg","scaffold2|size1077242_853653_854921",853653,854921,"+","FIG01229323: hypothetical protein","FIG01229320","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2707","peg","scaffold2|size1077242_855031_854912",855031,854912,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2708","peg","scaffold2|size1077242_855083_855463",855083,855463,"+","Protein LiaI","FIG00012569","icw(5);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2709","peg","scaffold2|size1077242_855490_856167",855490,856167,"+","Protein LiaH, similar to phage shock protein A","FIG00141575","icw(1);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2710","peg","scaffold2|size1077242_856268_857140",856268,857140,"+","Conserved protein LiaG in B. subtilis in Lia cluster","FIG00147949","icw(2);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2711","peg","scaffold2|size1077242_857174_857899",857174,857899,"+","Transporter LiaF","FIG00882948","isu;VraSR_and_LiaSR_two-component_regulatory_systems icw(3);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2712","peg","scaffold2|size1077242_857896_858978",857896,858978,"+","Sensor histidine kinase LiaS","FIG00013423","icw(2);VraSR_and_LiaSR_two-component_regulatory_systems icw(4);Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2713","peg","scaffold2|size1077242_858956_859591",858956,859591,"+","Response regulator LiaR","FIG01304429","icw(1);VraSR_and_LiaSR_two-component_regulatory_systems isu;Bacitracin_Stress_Response"]
["scaffold2|size1077242","fig|6666666.156949.peg.2714","peg","scaffold2|size1077242_860720_859599",860720,859599,"-","Spore germination protein GerAC, germination response to L-alanine and related amino acids (earliest stage)","FIG00023485","icw(2);Spore_germination"]
["scaffold2|size1077242","fig|6666666.156949.peg.2715","peg","scaffold2|size1077242_861748_860717",861748,860717,"-","Spore germination protein GerAB, germination response to L-alanine and related amino acids (earliest stage)","FIG00142936","isu;Spore_germination"]
["scaffold2|size1077242","fig|6666666.156949.peg.2716","peg","scaffold2|size1077242_863231_861783",863231,861783,"-","Spore germination protein GerAA, germination response to L-alanine and related amino acids (earliest stage)","FIG00080700","icw(1);Spore_germination"]
["scaffold2|size1077242","fig|6666666.156949.peg.2717","peg","scaffold2|size1077242_863349_863534",863349,863534,"+","FIG01234467: hypothetical protein","FIG01234461","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2718","peg","scaffold2|size1077242_863601_864989",863601,864989,"+","Fumarate hydratase class II (EC 4.2.1.2)","FIG00000340","isu;TCA_Cycle"]
["scaffold2|size1077242","fig|6666666.156949.peg.2719","peg","scaffold2|size1077242_865904_865029",865904,865029,"-","TetR family transcriptional regulator probably coupled to RND multidrug efflux transporter","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2720","peg","scaffold2|size1077242_866072_866236",866072,866236,"+","FIG01231913: hypothetical protein","FIG01231912","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2721","peg","scaffold2|size1077242_867619_866264",867619,866264,"-","sensor histidine kinase","FIG00431356","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2722","peg","scaffold2|size1077242_868293_867616",868293,867616,"-","Transcriptional regulatory protein cssR","FIG01166874","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2723","peg","scaffold2|size1077242_868495_868361",868495,868361,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2724","peg","scaffold2|size1077242_868571_869947",868571,869947,"+","Serine protease, DegP/HtrA, do-like (EC 3.4.21.-)","FIG00083017","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2725","peg","scaffold2|size1077242_870451_869990",870451,869990,"-","Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1)","FIG00017247","idu(1);Oxidative_stress idu(1);Oxidative_stress idu(1);Oxidative_stress"]
["scaffold2|size1077242","fig|6666666.156949.peg.2726","peg","scaffold2|size1077242_871383_870541",871383,870541,"-","Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)","FIG01306640","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2727","peg","scaffold2|size1077242_871518_873314",871518,873314,"+","Oligoendopeptidase F (EC 3.4.24.-)","FIG00628107","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2728","peg","scaffold2|size1077242_873424_873861",873424,873861,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2729","peg","scaffold2|size1077242_874019_874906",874019,874906,"+","ABC-type Fe3+-siderophore transport system, ATPase component","FIG00069895","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2730","peg","scaffold2|size1077242_874974_875219",874974,875219,"+","FIG01234358: hypothetical protein","FIG01225137","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2731","peg","scaffold2|size1077242_876126_875239",876126,875239,"-","putative transcriptional regulatory protein, LysR family","FIG01230337","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2732","peg","scaffold2|size1077242_876260_877000",876260,877000,"+","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)","FIG00621114","idu(6);CBSS-246196.1.peg.364 idu(6);Fatty_Acid_Biosynthesis_FASII"]
["scaffold2|size1077242","fig|6666666.156949.peg.2733","peg","scaffold2|size1077242_877100_877402",877100,877402,"+","FIG01229721: hypothetical protein","FIG01229719","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2734","peg","scaffold2|size1077242_879063_877438",879063,877438,"-","Multidrug efflux transporter MdtP","FIG00014983","isu;Multidrug_Resistance_Operon_mdtRP_of_Bacillus"]
["scaffold2|size1077242","fig|6666666.156949.peg.2735","peg","scaffold2|size1077242_879527_879060",879527,879060,"-","MdtR transcriptional regulator, MarR family","FIG00013359","icw(1);Multidrug_Resistance_Operon_mdtRP_of_Bacillus"]
["scaffold2|size1077242","fig|6666666.156949.peg.2736","peg","scaffold2|size1077242_880018_879686",880018,879686,"-","Spore coat F-containing protein","FIG01239058","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2737","peg","scaffold2|size1077242_880276_880031",880276,880031,"-","FIG01230825: hypothetical protein","FIG01230824","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2738","peg","scaffold2|size1077242_880370_881278",880370,881278,"+","Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)","FIG00002570","idu(1);Respiratory_dehydrogenases_1 idu(1);Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2739","peg","scaffold2|size1077242_881449_881303",881449,881303,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2740","peg","scaffold2|size1077242_881546_883993",881546,883993,"+","Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)","FIG00002522","icw(1);n-Phenylalkanoic_acid_degradation icw(1);Polyhydroxybutyrate_metabolism isu;Isoleucine_degradation icw(1);Isoleucine_degradation icw(1);Fatty_acid_metabolism_cluster isu;Butyrate_metabolism_cluster icw(1);Acetyl-CoA_fermentation_to_Butyrate isu;Valine_degradation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2741","peg","scaffold2|size1077242_884004_885179",884004,885179,"+","3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)","NA","idu(1);CBSS-246196.1.peg.364 idu(1);n-Phenylalkanoic_acid_degradation idu(1);Ethylmalonyl-CoA_pathway_of_C2_assimilation,_GJO idu(1);Polyhydroxybutyrate_metabolism idu(1);Polyhydroxybutyrate_metabolism icw(1);Isoleucine_degradation idu(1);Fatty_acid_metabolism_cluster idu(1);Biotin_biosynthesis idu(1);Isoprenoid_Biosynthesis icw(1);Butyrate_metabolism_cluster idu(1);Serine-glyoxylate_cycle idu(1);Serine-glyoxylate_cycle idu(1);Lysine_fermentation idu(1);Butanol_Biosynthesis idu(1);Acetyl-CoA_fermentation_to_Butyrate"]
["scaffold2|size1077242","fig|6666666.156949.peg.2742","peg","scaffold2|size1077242_885194_886978",885194,886978,"+","Butyryl-CoA dehydrogenase (EC 1.3.99.2)","FIG00009149","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2743","peg","scaffold2|size1077242_887088_887444",887088,887444,"+","Arsenate reductase (EC 1.20.4.1)","FIG00000770","idu(1);Transcription_repair_cluster icw(4);CBSS-315749.4.peg.3658 idu(1);Arsenic_resistance idu(1);Anaerobic_respiratory_reductases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2744","peg","scaffold2|size1077242_887511_887894",887511,887894,"+","Glycine cleavage system H protein","FIG00000296","icw(3);CBSS-315749.4.peg.3658 isu;Glycine_and_Serine_Utilization isu;Glycine_cleavage_system"]
["scaffold2|size1077242","fig|6666666.156949.peg.2745","peg","scaffold2|size1077242_887950_888186",887950,888186,"+","FIG109201: Hypothetical protein","FIG00014053","icw(5);CBSS-315749.4.peg.3658"]
["scaffold2|size1077242","fig|6666666.156949.peg.2746","peg","scaffold2|size1077242_888258_888626",888258,888626,"+","Toprim domain protein","FIG00011200","isu;CBSS-315749.4.peg.3658"]
["scaffold2|size1077242","fig|6666666.156949.peg.2747","peg","scaffold2|size1077242_888628_888948",888628,888948,"+","Thioredoxin","FIG01970755","icw(1);CBSS-315749.4.peg.3658 idu(4);Glycine_reductase,_sarcosine_reductase_and_betaine_reductase"]
["scaffold2|size1077242","fig|6666666.156949.peg.2748","peg","scaffold2|size1077242_889055_889399",889055,889399,"+","FIG011871: Hypothetical protein","FIG00011871","icw(2);CBSS-315749.4.peg.3658"]
["scaffold2|size1077242","fig|6666666.156949.peg.2749","peg","scaffold2|size1077242_889577_889705",889577,889705,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2750","peg","scaffold2|size1077242_889726_890751",889726,890751,"+","Methionine ABC transporter ATP-binding protein","FIG00006151","icw(1);Methionine_Degradation idu(2);Methionine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2751","peg","scaffold2|size1077242_890744_891412",890744,891412,"+","Methionine ABC transporter permease protein","FIG00045144","icw(2);Methionine_Degradation icw(2);Methionine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2752","peg","scaffold2|size1077242_891426_892250",891426,892250,"+","Methionine ABC transporter substrate-binding protein","FIG00047509","idu(1);Methionine_Degradation idu(1);Staphylococcal_pathogenicity_islands_SaPI icw(1);Methionine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2753","peg","scaffold2|size1077242_892335_892712",892335,892712,"+","YURZ protein","FIG01309505","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2754","peg","scaffold2|size1077242_892859_892740",892859,892740,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2755","peg","scaffold2|size1077242_892906_893043",892906,893043,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2756","peg","scaffold2|size1077242_893237_894022",893237,894022,"+","Iron-sulfur cluster assembly ATPase protein SufC","FIG00018727","isu;tRNA_modification_Bacteria icw(2);Iron-sulfur_cluster_assembly"]
["scaffold2|size1077242","fig|6666666.156949.peg.2757","peg","scaffold2|size1077242_894040_895353",894040,895353,"+","Iron-sulfur cluster assembly protein SufD","FIG00072797","icw(1);tRNA_modification_Bacteria icw(1);Iron-sulfur_cluster_assembly"]
["scaffold2|size1077242","fig|6666666.156949.peg.2758","peg","scaffold2|size1077242_895353_896573",895353,896573,"+","Cysteine desulfurase (EC 2.8.1.7), SufS subfamily","NA","icw(2);tRNA_modification_Bacteria icw(3);Iron-sulfur_cluster_assembly isu;mnm5U34_biosynthesis_bacteria isu;Alanine_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2759","peg","scaffold2|size1077242_896563_897006",896563,897006,"+","Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2","FIG00000306","isu;Iron-sulfur_cluster_assembly"]
["scaffold2|size1077242","fig|6666666.156949.peg.2760","peg","scaffold2|size1077242_897027_898424",897027,898424,"+","Iron-sulfur cluster assembly protein SufB","FIG00000451","icw(3);tRNA_modification_Bacteria icw(4);Iron-sulfur_cluster_assembly"]
["scaffold2|size1077242","fig|6666666.156949.peg.2761","peg","scaffold2|size1077242_898912_899238",898912,899238,"+","RS21-C6-like protein (RS21-C6 protein)","FIG01234439","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2762","peg","scaffold2|size1077242_899242_900996",899242,900996,"+","Uncharacterized conserved protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2763","peg","scaffold2|size1077242_901617_901342",901617,901342,"-","Uncharacterized protein yurS","FIG01645319","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2764","peg","scaffold2|size1077242_901763_901617",901763,901617,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2765","peg","scaffold2|size1077242_901922_903040",901922,903040,"+","D-amino acid dehydrogenase small subunit (EC 1.4.99.1)","FIG00054875","isu;Respiratory_dehydrogenases_1 isu;Pyruvate_Alanine_Serine_Interconversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2766","peg","scaffold2|size1077242_903284_903517",903284,903517,"+","Endo/excinuclease amino terminal domain protein","FIG01229470","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2767","peg","scaffold2|size1077242_903733_904719",903733,904719,"+","Fructoselysine 6-phosphate deglycase (EC 3.5.-.-)","FIG00142855","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2768","peg","scaffold2|size1077242_904800_906068",904800,906068,"+","N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein","FIG00013626","isu;Chitin_and_N-acetylglucosamine_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2769","peg","scaffold2|size1077242_906126_907004",906126,907004,"+","N-Acetyl-D-glucosamine ABC transport system, permease protein 1","FIG00008591","icw(1);Chitin_and_N-acetylglucosamine_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2770","peg","scaffold2|size1077242_907008_907910",907008,907910,"+","ABC sugar transporter, inner membrane subunit","FIG00883327","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2771","peg","scaffold2|size1077242_907924_908778",907924,908778,"+","Carbohydrate kinase, PfkB","FIG00531215","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2772","peg","scaffold2|size1077242_909531_908803",909531,908803,"-","Uncharacterized HTH-type transcriptional regulator yurK","FIG01244669","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2773","peg","scaffold2|size1077242_909713_910816",909713,910816,"+","Multiple sugar ABC transporter, ATP-binding protein","FIG00007025","idu(1);Fructooligosaccharides(FOS)_and_Raffinose_Utilization idu(1);Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2774","peg","scaffold2|size1077242_911716_910850",911716,910850,"-","Extracellular ribonuclease Bsn","FIG00020309","isu;Ribonucleases_in_Bacillus isu;External_and_Outer_Membrane_Nucleases"]
["scaffold2|size1077242","fig|6666666.156949.peg.2775","peg","scaffold2|size1077242_912162_913400",912162,913400,"+","Allantoate amidohydrolase (EC 3.5.3.9)","FIG01304617","isu;Allantoin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2776","peg","scaffold2|size1077242_913417_914667",913417,914667,"+","Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)","FIG00001757","isu;Serine-glyoxylate_cycle isu;Pyruvate_Alanine_Serine_Interconversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2777","peg","scaffold2|size1077242_914810_914697",914810,914697,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2778","peg","scaffold2|size1077242_914894_915886",914894,915886,"+","XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)","FIG01304011","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2779","peg","scaffold2|size1077242_915883_916500",915883,916500,"+","CTP:molybdopterin cytidylyltransferase","FIG00007638","isu;Molybdopterin_cytosine_dinucleotide icw(2);Xanthine_dehydrogenase_subunits isu;Carbon_monoxide_oxidation"]
["scaffold2|size1077242","fig|6666666.156949.peg.2780","peg","scaffold2|size1077242_916497_917330",916497,917330,"+","Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)","FIG01176807","icw(1);Purine_Utilization icw(1);Xanthine_dehydrogenase_subunits"]
["scaffold2|size1077242","fig|6666666.156949.peg.2781","peg","scaffold2|size1077242_917331_919568",917331,919568,"+","Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)","FIG00000962","icw(1);Purine_Utilization isu;Xanthine_dehydrogenase_subunits"]
["scaffold2|size1077242","fig|6666666.156949.peg.2782","peg","scaffold2|size1077242_919559_920080",919559,920080,"+","Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)","FIG00149566","icw(4);Purine_Utilization icw(3);Xanthine_dehydrogenase_subunits"]
["scaffold2|size1077242","fig|6666666.156949.peg.2783","peg","scaffold2|size1077242_920453_920578",920453,920578,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2784","peg","scaffold2|size1077242_921186_920842",921186,920842,"-","5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17)","FIG00994100","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2785","peg","scaffold2|size1077242_922670_921186",922670,921186,"-","2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2786","peg","scaffold2|size1077242_923975_922683",923975,922683,"-","Xanthine permease","FIG01291334","icw(1);Xanthine_Metabolism_in_Bacteria icw(1);Purine_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2787","peg","scaffold2|size1077242_925330_923981",925330,923981,"-","Xanthine permease","NA","icw(1);Xanthine_Metabolism_in_Bacteria icw(1);Purine_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2788","peg","scaffold2|size1077242_927070_925475",927070,925475,"-","Purine catabolism regulatory protein","FIG01389718","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2789","peg","scaffold2|size1077242_927245_928585",927245,928585,"+","Allantoinase (EC 3.5.2.5)","FIG00002008","isu;Allantoin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2790","peg","scaffold2|size1077242_928682_929029",928682,929029,"+","FIG01228826: hypothetical protein","FIG01228825","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2791","peg","scaffold2|size1077242_929067_929915",929067,929915,"+","FIG003003: hypothetical protein","FIG00634249","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2792","peg","scaffold2|size1077242_929933_930754",929933,930754,"+","FIG01228566: hypothetical protein","FIG01108301","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2793","peg","scaffold2|size1077242_930774_932162",930774,932162,"+","5'-nucleotidase family protein in cluster with NagD-like phosphatase","FIG00078083","isu;Purine_conversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2794","peg","scaffold2|size1077242_932227_932532",932227,932532,"+","DUF1805 domain-containing protein","FIG01308241","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2795","peg","scaffold2|size1077242_932644_933372",932644,933372,"+","FIG01225377: hypothetical protein","FIG01225376","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2796","peg","scaffold2|size1077242_934398_933400",934398,933400,"-","Cell wall endopeptidase, family M23/M37","FIG00095288","isu;Glutaredoxins"]
["scaffold2|size1077242","fig|6666666.156949.peg.2797","peg","scaffold2|size1077242_934615_935511",934615,935511,"+","Lipoate synthase","FIG00000362","isu;Lipoic_acid_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2798","peg","scaffold2|size1077242_936159_935527",936159,935527,"-","Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)","FIG00014764","idu(2);ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)"]
["scaffold2|size1077242","fig|6666666.156949.peg.2799","peg","scaffold2|size1077242_936273_936548",936273,936548,"+","Hypothetical DUF1027 domain protein","FIG01328967","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2800","peg","scaffold2|size1077242_936572_937006",936572,937006,"+","BH3430 unknown conserved protein","FIG01307853","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2801","peg","scaffold2|size1077242_937035_937805",937035,937805,"+","Hypothetical NagD-like phosphatase","FIG01969867","isu;Pyridoxin(Vitamin_B6)_Degradation_Pathway"]
["scaffold2|size1077242","fig|6666666.156949.peg.2802","peg","scaffold2|size1077242_938332_937832",938332,937832,"-","Low temperature requirement C protein","FIG01350066","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2803","peg","scaffold2|size1077242_938369_938482",938369,938482,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2804","peg","scaffold2|size1077242_938488_939504",938488,939504,"+","Spore coat protein S","FIG00012565","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2805","peg","scaffold2|size1077242_939705_941006",939705,941006,"+","Homoserine dehydrogenase (EC 1.1.1.3)","FIG00000434","isu;Threonine_and_Homoserine_Biosynthesis icw(1);Methionine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2806","peg","scaffold2|size1077242_941006_942064",941006,942064,"+","Threonine synthase (EC 4.2.3.1)","FIG00000134","icw(1);Threonine_and_Homoserine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2807","peg","scaffold2|size1077242_942061_942990",942061,942990,"+","Homoserine kinase (EC 2.7.1.39)","FIG00000582","idu(1);CBSS-269482.1.peg.1294 icw(2);Threonine_and_Homoserine_Biosynthesis idu(1);Methionine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2808","peg","scaffold2|size1077242_943098_945071",943098,945071,"+","Acylamino-acid-releasing enzyme (EC 3.4.19.1)","FIG01955798","isu;Omega_peptidases_(EC_3.4.19.-)"]
["scaffold2|size1077242","fig|6666666.156949.peg.2809","peg","scaffold2|size1077242_945350_945114",945350,945114,"-","NifU-like domain protein","FIG00006109","isu;CBSS-101031.3.peg.1876"]
["scaffold2|size1077242","fig|6666666.156949.peg.2810","peg","scaffold2|size1077242_945544_945870",945544,945870,"+","YuzD-like protein","FIG00009537","icw(1);CBSS-101031.3.peg.1876"]
["scaffold2|size1077242","fig|6666666.156949.peg.2811","peg","scaffold2|size1077242_946963_945896",946963,945896,"-","NADH dehydrogenase (EC 1.6.99.3)","FIG00008708","idu(2);Respiratory_dehydrogenases_1 idu(2);Riboflavin_synthesis_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.2812","peg","scaffold2|size1077242_947226_947462",947226,947462,"+","FIG01108150: hypothetical protein","FIG01225734","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2813","peg","scaffold2|size1077242_947598_948812",947598,948812,"+","Na+ dependent nucleoside transporter NupC","NA","isu;Deoxyribose_and_Deoxynucleoside_Catabolism isu;Xanthine_Metabolism_in_Bacteria"]
["scaffold2|size1077242","fig|6666666.156949.peg.2814","peg","scaffold2|size1077242_948935_949789",948935,949789,"+","Diaminopimelate epimerase (EC 5.1.1.7)","FIG00000421","isu;CBSS-323850.3.peg.3269 isu;Lysine_Biosynthesis_DAP_Pathway isu;CBSS-84588.1.peg.1247 isu;Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch"]
["scaffold2|size1077242","fig|6666666.156949.peg.2815","peg","scaffold2|size1077242_949865_950230",949865,950230,"+","probable iron binding protein from the HesB_IscA_SufA family","FIG00000502","isu;Iron-sulfur_cluster_assembly"]
["scaffold2|size1077242","fig|6666666.156949.peg.2816","peg","scaffold2|size1077242_950571_951089",950571,951089,"+","negative regulation of sporulation, septation and degradative enzyme genes (aprE, nprE, phoA, sacB)","FIG01229212","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2817","peg","scaffold2|size1077242_951113_951736",951113,951736,"+","protease synthase and sporulation negative regulatory protein PAI 2","FIG01326045","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2818","peg","scaffold2|size1077242_952790_951810",952790,951810,"-","GMP reductase (EC 1.7.1.7)","FIG00001278","isu;Purine_conversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2819","peg","scaffold2|size1077242_953069_953209",953069,953209,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2820","peg","scaffold2|size1077242_954245_953247",954245,953247,"-","Thioredoxin reductase (EC 1.8.1.9)","NA","idu(3);pyrimidine_conversions idu(3);Glycine_reductase,_sarcosine_reductase_and_betaine_reductase idu(3);Thioredoxin-disulfide_reductase"]
["scaffold2|size1077242","fig|6666666.156949.peg.2821","peg","scaffold2|size1077242_954538_955797",954538,955797,"+","NADH dehydrogenase (EC 1.6.99.3)","FIG00008708","idu(2);Respiratory_dehydrogenases_1 idu(2);Riboflavin_synthesis_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.2822","peg","scaffold2|size1077242_955970_956113",955970,956113,"+","FIG01236376: hypothetical protein","FIG01236375","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2823","peg","scaffold2|size1077242_956167_956487",956167,956487,"+","FIG01225718: hypothetical protein","FIG01225716","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2824","peg","scaffold2|size1077242_956596_957246",956596,957246,"+","FIG01227382: hypothetical protein","FIG01227381","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2825","peg","scaffold2|size1077242_957752_957276",957752,957276,"-","YuiD","FIG01964444","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2826","peg","scaffold2|size1077242_957910_959412",957910,959412,"+","Cytosol aminopeptidase PepA (EC 3.4.11.1)","FIG00000336","isu;Aminopeptidases_(EC_3.4.11.-) isu;Dehydrogenase_complexes"]
["scaffold2|size1077242","fig|6666666.156949.peg.2827","peg","scaffold2|size1077242_959560_960888",959560,960888,"+","Histidine permease YuiF","FIG00622714","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2828","peg","scaffold2|size1077242_961544_960942",961544,960942,"-","Substrate-specific component BioY of biotin ECF transporter","FIG00012067","idu(1);ECF_class_transporters idu(1);Biotin_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2829","peg","scaffold2|size1077242_961645_962241",961645,962241,"+","Sulfite oxidase and related enzymes","FIG01169552","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2830","peg","scaffold2|size1077242_962455_963324",962455,963324,"+","Trilactone hydrolase [bacillibactin] siderophore","FIG00012700","isu;Bacillibactin_Siderophore"]
["scaffold2|size1077242","fig|6666666.156949.peg.2831","peg","scaffold2|size1077242_963399_964304",963399,964304,"+","2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) [bacillibactin] siderophore @ 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) of siderophore biosynthesis","FIG00148885","icw(3);Bacillibactin_Siderophore"]
["scaffold2|size1077242","fig|6666666.156949.peg.2832","peg","scaffold2|size1077242_964330_965526",964330,965526,"+","Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis","NA","icw(1);Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more."]
["scaffold2|size1077242","fig|6666666.156949.peg.2833","peg","scaffold2|size1077242_965555_967174",965555,967174,"+","2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [bacillibactin] siderophore","FIG00148923","icw(2);Bacillibactin_Siderophore"]
["scaffold2|size1077242","fig|6666666.156949.peg.2834","peg","scaffold2|size1077242_967202_968140",967202,968140,"+","Isochorismatase (EC 3.3.2.1) [bacillibactin] siderophore @ Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis","FIG00148890","isu;NAD_and_NADP_cofactor_biosynthesis_global isu;Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. icw(1);Bacillibactin_Siderophore"]
["scaffold2|size1077242","fig|6666666.156949.peg.2835","peg","scaffold2|size1077242_968160_975296",968160,975296,"+","Siderophore biosynthesis non-ribosomal peptide synthetase modules @ Bacillibactin synthetase component F (EC 2.7.7.-)","FIG01954413","icw(1);Bacillibactin_Siderophore"]
["scaffold2|size1077242","fig|6666666.156949.peg.2836","peg","scaffold2|size1077242_975312_975521",975312,975521,"+","Polymyxin synthetase PmxB","FIG00013207","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2837","peg","scaffold2|size1077242_976243_975566",976243,975566,"-","alternate gene name: yukI","FIG01344439","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2838","peg","scaffold2|size1077242_977491_976355",977491,976355,"-","Alanine dehydrogenase (EC 1.4.1.1)","FIG00000895","isu;CBSS-269801.1.peg.809 isu;Pyruvate_Alanine_Serine_Interconversions"]
["scaffold2|size1077242","fig|6666666.156949.peg.2839","peg","scaffold2|size1077242_978816_977593",978816,977593,"-","Regulator of polyketide synthase expression","FIG00056421","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2840","peg","scaffold2|size1077242_978840_979082",978840,979082,"+","FIG01247936: hypothetical protein","FIG01542100","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2841","peg","scaffold2|size1077242_979381_979674",979381,979674,"+","6 kDa early secretory antigenic target ESAT-6 (EsxA)","FIG00002402","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2842","peg","scaffold2|size1077242_979744_979983",979744,979983,"+","Putative secretion accessory protein EsaB/YukD","FIG00003292","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2843","peg","scaffold2|size1077242_979998_981338",979998,981338,"+","Putative secretion system component EssB/YukC","FIG00016028","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2844","peg","scaffold2|size1077242_981399_985886",981399,985886,"+","FtsK/SpoIIIE family protein, putative EssC component of Type VII secretion system","FIG00002681","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2845","peg","scaffold2|size1077242_985883_989089",985883,989089,"+","Putative secretion accessory protein EsaA/YueB / Bacteriophage SPP1 receptor","FIG00076381","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2846","peg","scaffold2|size1077242_989097_989576",989097,989576,"+","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2847","peg","scaffold2|size1077242_989639_990370",989639,990370,"+","Short-chain dehydrogenase/reductase SDR","FIG00440067","idu(1);Transcription_repair_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.2848","peg","scaffold2|size1077242_990568_991098",990568,991098,"+","BH2866 unknown conserved protein in B. subtilis","FIG01241489","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2849","peg","scaffold2|size1077242_991230_991057",991230,991057,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2850","peg","scaffold2|size1077242_991276_991512",991276,991512,"+","FIG01231037: hypothetical protein","FIG01231033","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2851","peg","scaffold2|size1077242_991942_991553",991942,991553,"-","A2-5a orf4","FIG01313560","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2852","peg","scaffold2|size1077242_992057_993166",992057,993166,"+","UPF0118 membrane protein YrrI","FIG00009731","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2853","peg","scaffold2|size1077242_993226_993447",993226,993447,"+","Similar to proteins GerPF and GerPA","FIG01231890","isu;Spore_germination"]
["scaffold2|size1077242","fig|6666666.156949.peg.2854","peg","scaffold2|size1077242_993520_993768",993520,993768,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2855","peg","scaffold2|size1077242_993840_994238",993840,994238,"+","FIG00743012: hypothetical protein","FIG01318053","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2856","peg","scaffold2|size1077242_994335_994886",994335,994886,"+","Nicotinamidase (EC 3.5.1.19)","FIG00067300","icw(1);NAD_and_NADP_cofactor_biosynthesis_global idu(1);Niacin-Choline_transport_and_metabolism icw(1);Redox-dependent_regulation_of_nucleus_processes"]
["scaffold2|size1077242","fig|6666666.156949.peg.2857","peg","scaffold2|size1077242_994902_996374",994902,996374,"+","Nicotinate phosphoribosyltransferase (EC 2.4.2.11)","FIG00000387","isu;NAD_and_NADP_cofactor_biosynthesis_global isu;Redox-dependent_regulation_of_nucleus_processes"]
["scaffold2|size1077242","fig|6666666.156949.peg.2858","peg","scaffold2|size1077242_996511_997740",996511,997740,"+","alternate gene name: comB, yufA","FIG01228054","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2859","peg","scaffold2|size1077242_998084_997716",998084,997716,"-","unknown","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2860","peg","scaffold2|size1077242_998547_998687",998547,998687,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2861","peg","scaffold2|size1077242_998872_999771",998872,999771,"+","pre-ComX modifying enzyme","FIG01237116","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2862","peg","scaffold2|size1077242_999759_999926",999759,999926,"+","ComX pheromone precursor","FIG01500914","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2863","peg","scaffold2|size1077242_999941_1002250",999941,1002250,"+","ComP","FIG01232985","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2864","peg","scaffold2|size1077242_1002331_1002975",1002331,1002975,"+","Transcriptional regulatory protein ComA (Bsu)","FIG01332321","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2865","peg","scaffold2|size1077242_1002991_1003374",1002991,1003374,"+","ComA operon protein 2","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2866","peg","scaffold2|size1077242_1003787_1003413",1003787,1003413,"-","Na(+) H(+) antiporter subunit G","FIG00007690","icw(6);Multi-subunit_cation_antiporter"]
["scaffold2|size1077242","fig|6666666.156949.peg.2867","peg","scaffold2|size1077242_1004055_1003771",1004055,1003771,"-","Na(+) H(+) antiporter subunit F","FIG00001466","isu;Multi-subunit_cation_antiporter"]
["scaffold2|size1077242","fig|6666666.156949.peg.2868","peg","scaffold2|size1077242_1004531_1004055",1004531,1004055,"-","Na(+) H(+) antiporter subunit E","FIG00001451","icw(1);Multi-subunit_cation_antiporter"]
["scaffold2|size1077242","fig|6666666.156949.peg.2869","peg","scaffold2|size1077242_1006018_1004537",1006018,1004537,"-","Na(+) H(+) antiporter subunit D","FIG00001443","icw(5);Multi-subunit_cation_antiporter"]
["scaffold2|size1077242","fig|6666666.156949.peg.2870","peg","scaffold2|size1077242_1006352_1006011",1006352,1006011,"-","Na(+) H(+) antiporter subunit C","FIG00001398","icw(4);Multi-subunit_cation_antiporter"]
["scaffold2|size1077242","fig|6666666.156949.peg.2871","peg","scaffold2|size1077242_1006783_1006352",1006783,1006352,"-","Na(+) H(+) antiporter subunit B","NA","icw(2);Multi-subunit_cation_antiporter"]
["scaffold2|size1077242","fig|6666666.156949.peg.2872","peg","scaffold2|size1077242_1009181_1006776",1009181,1006776,"-","Na(+) H(+) antiporter subunit A","FIG01304066","icw(3);Multi-subunit_cation_antiporter"]
["scaffold2|size1077242","fig|6666666.156949.peg.2873","peg","scaffold2|size1077242_1009412_1009627",1009412,1009627,"+","FIG01228471: hypothetical protein","FIG01228469","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2874","peg","scaffold2|size1077242_1011009_1009663",1011009,1009663,"-","Malate Na(+) symporter","FIG01304383","idu(2);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold2|size1077242","fig|6666666.156949.peg.2875","peg","scaffold2|size1077242_1012123_1011164",1012123,1011164,"-","Unspecified monosaccharide ABC transport system, permease component 2","FIG00008796","icw(1);Unspecified_monosaccharide_transport_cluster icw(1);CBSS-257314.1.peg.676"]
["scaffold2|size1077242","fig|6666666.156949.peg.2876","peg","scaffold2|size1077242_1013170_1012124",1013170,1012124,"-","Unspecified monosaccharide ABC transport system, permease component Ia (FIG025991) / Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)","NA","isu;Unspecified_monosaccharide_transport_cluster icw(3);Unspecified_monosaccharide_transport_cluster isu;CBSS-257314.1.peg.676 icw(2);CBSS-257314.1.peg.676"]
["scaffold2|size1077242","fig|6666666.156949.peg.2877","peg","scaffold2|size1077242_1014695_1013163",1014695,1013163,"-","Unspecified monosaccharide ABC transport system, ATP-binding protein","NA","icw(2);Unspecified_monosaccharide_transport_cluster icw(2);CBSS-257314.1.peg.676"]
["scaffold2|size1077242","fig|6666666.156949.peg.2878","peg","scaffold2|size1077242_1015850_1014771",1015850,1014771,"-","Unspecified monosaccharide ABC transport system, substrate-binding component","NA","icw(3);Unspecified_monosaccharide_transport_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.2879","peg","scaffold2|size1077242_1017031_1016324",1017031,1016324,"-","Two-component response regulator, malate (EC 2.7.3.-)","FIG00002827","isu;Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold2|size1077242","fig|6666666.156949.peg.2880","peg","scaffold2|size1077242_1018625_1017024",1018625,1017024,"-","Two-component sensor histidine kinase, malate (EC 2.7.3.-)","FIG00002133","icw(1);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold2|size1077242","fig|6666666.156949.peg.2881","peg","scaffold2|size1077242_1018803_1019360",1018803,1019360,"+","putative membrane protein","FIG00092051","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2882","peg","scaffold2|size1077242_1019997_1019584",1019997,1019584,"-","FIG01236000: hypothetical protein","FIG01235999","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2883","peg","scaffold2|size1077242_1021892_1020018",1021892,1020018,"-","Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)","FIG00000011","idu(2);Peptidoglycan_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2884","peg","scaffold2|size1077242_1023043_1021985",1023043,1021985,"-","FIG01228594: hypothetical protein","FIG01228593","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2885","peg","scaffold2|size1077242_1023096_1023299",1023096,1023299,"+","FIG01225534: hypothetical protein","FIG01225533","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2886","peg","scaffold2|size1077242_1023375_1023992",1023375,1023992,"+","KapD, inhibitor of KinA pathway to sporulation","FIG00013322","icw(2);Sporulation_gene_orphans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2887","peg","scaffold2|size1077242_1024405_1024019",1024405,1024019,"-","KapB, lipoprotein required for KinB pathway to sporulation","FIG00015495","isu;Sporulation_gene_orphans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2888","peg","scaffold2|size1077242_1025737_1024451",1025737,1024451,"-","Sporulation kinase B (EC 2.7.13.3)","FIG00012307","icw(1);Sporulation_gene_orphans"]
["scaffold2|size1077242","fig|6666666.156949.peg.2889","peg","scaffold2|size1077242_1027026_1025863",1027026,1025863,"-","Cystathionine beta-lyase, Bsu PatB (EC 4.4.1.8)","FIG01354028","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2890","peg","scaffold2|size1077242_1027113_1027373",1027113,1027373,"+","DUF1871 domain-containing protein","FIG01318506","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2891","peg","scaffold2|size1077242_1028220_1027399",1028220,1027399,"-","Alpha/beta hydrolase fold (EC 3.8.1.5)","FIG01336432","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2892","peg","scaffold2|size1077242_1028368_1028868",1028368,1028868,"+","Transcriptional regulator, AsnC family","FIG01956023","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2893","peg","scaffold2|size1077242_1028869_1030029",1028869,1030029,"+","Aspartate aminotransferase (EC 2.6.1.1)","FIG00719736","idu(7);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(7);Threonine_and_Homoserine_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2894","peg","scaffold2|size1077242_1030231_1030623",1030231,1030623,"+","SSU ribosomal protein S1p","FIG00000210","idu(1);Cell_division-ribosomal_stress_proteins_cluster"]
["scaffold2|size1077242","fig|6666666.156949.peg.2895","peg","scaffold2|size1077242_1030938_1030702",1030938,1030702,"-","DUF378 domain-containing protein","FIG01316596","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2896","peg","scaffold2|size1077242_1031168_1032331",1031168,1032331,"+","NADH-dependent butanol dehydrogenase A (EC 1.1.1.-)","FIG01304636","isu;Butanol_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2897","peg","scaffold2|size1077242_1032435_1033607",1032435,1033607,"+","NADH-dependent butanol dehydrogenase B (EC 1.1.1.-)","FIG00160238","icw(1);Butanol_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2898","peg","scaffold2|size1077242_1033719_1035071",1033719,1035071,"+","Glucose-6-phosphate isomerase (EC 5.3.1.9)","FIG00000245","isu;Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes isu;Glycolysis_and_Gluconeogenesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2899","peg","scaffold2|size1077242_1035073_1035501",1035073,1035501,"+","Uncharacterized protein yugM","FIG01231414","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2900","peg","scaffold2|size1077242_1035561_1035965",1035561,1035965,"+","FIG01228800: hypothetical protein","FIG01228798","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2901","peg","scaffold2|size1077242_1036948_1035962",1036948,1035962,"-","YugO","FIG01233009","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2902","peg","scaffold2|size1077242_1037277_1036945",1037277,1036945,"-","FIG01236923: hypothetical protein","FIG01236921","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2903","peg","scaffold2|size1077242_1037324_1037587",1037324,1037587,"+","FIG01227748: hypothetical protein","FIG01227746","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2904","peg","scaffold2|size1077242_1037629_1038306",1037629,1038306,"+","probable metal-dependent peptidase","FIG01330402","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2905","peg","scaffold2|size1077242_1038350_1039639",1038350,1039639,"+","Magnesium and cobalt efflux protein CorC","FIG00042627","idu(4);Magnesium_transport idu(4);Glycyl-tRNA_synthetase_containing_cluster idu(4);CBSS-56780.10.peg.1536"]
["scaffold2|size1077242","fig|6666666.156949.peg.2906","peg","scaffold2|size1077242_1039766_1041430",1039766,1041430,"+","Alpha-glucosidase (EC 3.2.1.20)","FIG00745599","isu;D-Galacturonate_and_D-Glucuronate_Utilization isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2907","peg","scaffold2|size1077242_1041456_1041590",1041456,1041590,"+","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2908","peg","scaffold2|size1077242_1041550_1041948",1041550,1041948,"+","UPF0047 protein Bsu YugU","FIG00208126","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2909","peg","scaffold2|size1077242_1042096_1041932",1042096,1041932,"-","FIG01245991: hypothetical protein","FIG01417550","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2910","peg","scaffold2|size1077242_1042205_1042459",1042205,1042459,"+","FIG01233903: hypothetical protein","FIG01233902","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2911","peg","scaffold2|size1077242_1043210_1042473",1043210,1042473,"-","Protein-glutamine gamma-glutamyltransferase (EC 2.3.2.13)","FIG00009396","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2912","peg","scaffold2|size1077242_1043368_1045356",1043368,1045356,"+","methyl-accepting chemotaxis protein","FIG01251342","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2913","peg","scaffold2|size1077242_1045533_1047521",1045533,1047521,"+","methyl-accepting chemotaxis protein","FIG01251342","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2914","peg","scaffold2|size1077242_1047644_1049632",1047644,1049632,"+","methyl-accepting chemotaxis protein","FIG01251342","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2915","peg","scaffold2|size1077242_1049746_1051734",1049746,1051734,"+","methyl-accepting chemotaxis protein","FIG01251342","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2916","peg","scaffold2|size1077242_1051867_1051718",1051867,1051718,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2917","peg","scaffold2|size1077242_1051870_1053939",1051870,1053939,"+","Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)","FIG00111198","icw(2);L-rhamnose_utilization icw(4);L-rhamnose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2918","peg","scaffold2|size1077242_1053996_1054772",1053996,1054772,"+","Transcriptional regulator of rhamnose utilization, DeoR family","FIG00006496","icw(4);L-rhamnose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2919","peg","scaffold2|size1077242_1054777_1056234",1054777,1056234,"+","Rhamnulokinase (EC 2.7.1.5)","FIG00001865","icw(1);L-rhamnose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2920","peg","scaffold2|size1077242_1056252_1056566",1056252,1056566,"+","L-rhamnose mutarotase","FIG00001862","icw(3);L-rhamnose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2921","peg","scaffold2|size1077242_1056592_1057866",1056592,1057866,"+","L-rhamnose isomerase (EC 5.3.1.14)","FIG00006889","isu;L-rhamnose_utilization"]
["scaffold2|size1077242","fig|6666666.156949.peg.2922","peg","scaffold2|size1077242_1058893_1057907",1058893,1057907,"-","Possible oxidoreductase","FIG00553614","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2923","peg","scaffold2|size1077242_1059075_1060241",1059075,1060241,"+","FIG00774156: hypothetical protein","FIG00774155","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2924","peg","scaffold2|size1077242_1060334_1061164",1060334,1061164,"+","Undecaprenyl-diphosphatase (EC 3.6.1.27)","FIG00000555","NA"]
["scaffold2|size1077242","fig|6666666.156949.rna.50","rna","scaffold2|size1077242_1061271_1061343",1061271,1061343,"+","tRNA-Ala-GGC","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2925","peg","scaffold2|size1077242_1061935_1061450",1061935,1061450,"-","Cysteine dioxygenase (EC 1.13.11.20)","FIG00018621","isu;Aromatic_dioxygenase_mess isu;Dioxygenases_(EC_1.13.11.-)"]
["scaffold2|size1077242","fig|6666666.156949.peg.2926","peg","scaffold2|size1077242_1062410_1062276",1062410,1062276,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2927","peg","scaffold2|size1077242_1062429_1063964",1062429,1063964,"+","FIG01227699: hypothetical protein","FIG01227698","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2928","peg","scaffold2|size1077242_1064125_1064973",1064125,1064973,"+","N-acetylmuramoyl-L-alanine amidase, family 4","FIG01351180","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2929","peg","scaffold2|size1077242_1065082_1065345",1065082,1065345,"+","FIG01232024: hypothetical protein","FIG01232023","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2930","peg","scaffold2|size1077242_1066718_1065381",1066718,1065381,"-","Potassium uptake protein TrkH","NA","icw(1);Hyperosmotic_potassium_uptake icw(1);Potassium_homeostasis isu;Transport_system_clustering_with_HemG"]
["scaffold2|size1077242","fig|6666666.156949.peg.2931","peg","scaffold2|size1077242_1067393_1066725",1067393,1066725,"-","Trk system potassium uptake protein TrkA","NA","idu(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);Hyperosmotic_potassium_uptake idu(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase idu(1);Potassium_homeostasis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2932","peg","scaffold2|size1077242_1068305_1067760",1068305,1067760,"-","FIG01228574: hypothetical protein","FIG01228571","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2933","peg","scaffold2|size1077242_1069044_1068502",1069044,1068502,"-","FIG009707: Betaine operon transcriptional regulator","FIG01107912","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2934","peg","scaffold2|size1077242_1069243_1070715",1069243,1070715,"+","Betaine aldehyde dehydrogenase (EC 1.2.1.8)","FIG01269316","isu;Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis isu;Niacin-Choline_transport_and_metabolism"]
["scaffold2|size1077242","fig|6666666.156949.peg.2935","peg","scaffold2|size1077242_1070729_1071940",1070729,1071940,"+","Alcohol dehydrogenase (EC 1.1.1.1)","FIG01007502","idu(2);5-FCL-like_protein idu(2);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(2);Fermentations:_Mixed_acid idu(2);Butanol_Biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2936","peg","scaffold2|size1077242_1072028_1072606",1072028,1072606,"+","FIG060329: MOSC domain protein","FIG00149366","isu;Molybdenum_cofactor_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.peg.2937","peg","scaffold2|size1077242_1073103_1072612",1073103,1072612,"-","hypothetical protein","NA","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2938","peg","scaffold2|size1077242_1073217_1073792",1073217,1073792,"+","putative membrane protein","FIG00092051","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2939","peg","scaffold2|size1077242_1073813_1075342",1073813,1075342,"+","FIG01232284: hypothetical protein","FIG01232282","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2940","peg","scaffold2|size1077242_1075360_1075881",1075360,1075881,"+","FIG01240233: hypothetical protein","FIG01240232","NA"]
["scaffold2|size1077242","fig|6666666.156949.peg.2941","peg","scaffold2|size1077242_1076501_1075923",1076501,1075923,"-","Substrate-specific component ThiT of thiamin ECF transporter","FIG00011622","isu;ECF_class_transporters isu;Thiamin_biosynthesis"]
["scaffold2|size1077242","fig|6666666.156949.rna.51","rna","scaffold2|size1077242_1077165_1077242",1077165,1077242,"+","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold302|size577","fig|6666666.156949.peg.2942","peg","scaffold302|size577_128_373",128,373,"+","hypothetical protein","NA","NA"]
["scaffold307|size574","fig|6666666.156949.peg.2943","peg","scaffold307|size574_246_127",246,127,"-","hypothetical protein","NA","NA"]
["scaffold309|size574","fig|6666666.156949.rna.52","rna","scaffold309|size574_574_92",574,92,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold30|size1779","fig|6666666.156949.peg.2944","peg","scaffold30|size1779_7_1209",7,1209,"+","hypothetical protein","NA","NA"]
["scaffold315|size571","fig|6666666.156949.peg.2945","peg","scaffold315|size571_367_227",367,227,"-","hypothetical protein","NA","NA"]
["scaffold316|size571","fig|6666666.156949.peg.2946","peg","scaffold316|size571_477_4",477,4,"-","FIG00512199: hypothetical protein","FIG01657918","NA"]
["scaffold318|size569","fig|6666666.156949.peg.2947","peg","scaffold318|size569_167_307",167,307,"+","hypothetical protein","NA","NA"]
["scaffold31|size1771","fig|6666666.156949.peg.2948","peg","scaffold31|size1771_91_1044",91,1044,"+","Single-stranded DNA-binding protein","FIG00077620","idu(2);DNA_repair,_bacterial idu(2);DNA_repair,_bacterial_RecFOR_pathway idu(2);pVir_Plasmid_of_Campylobacter"]
["scaffold31|size1771","fig|6666666.156949.peg.2949","peg","scaffold31|size1771_1056_1316",1056,1316,"+","hypothetical protein","NA","NA"]
["scaffold31|size1771","fig|6666666.156949.peg.2950","peg","scaffold31|size1771_1309_1461",1309,1461,"+","hypothetical protein","NA","NA"]
["scaffold31|size1771","fig|6666666.156949.peg.2951","peg","scaffold31|size1771_1534_1647",1534,1647,"+","hypothetical protein","NA","NA"]
["scaffold321|size568","fig|6666666.156949.peg.2952","peg","scaffold321|size568_499_197",499,197,"-","Ferric iron ABC transporter, iron-binding protein","FIG00002011","isu;Campylobacter_Iron_Metabolism"]
["scaffold323|size567","fig|6666666.156949.peg.2953","peg","scaffold323|size567_526_347",526,347,"-","possible Histidinol-phosphatase (EC 3.1.3.15)","NA","NA"]
["scaffold324|size567","fig|6666666.156949.peg.2954","peg","scaffold324|size567_295_492",295,492,"+","hypothetical protein","NA","NA"]
["scaffold327|size566","fig|6666666.156949.peg.2955","peg","scaffold327|size566_347_96",347,96,"-","Cytochrome b6-f complex subunit, apocytochrome f","FIG00017385","NA"]
["scaffold329|size564","fig|6666666.156949.peg.2956","peg","scaffold329|size564_303_97",303,97,"-","hypothetical protein","NA","NA"]
["scaffold332|size563","fig|6666666.156949.peg.2957","peg","scaffold332|size563_179_334",179,334,"+","Mobile element protein","FIG01306568","NA"]
["scaffold339|size560","fig|6666666.156949.peg.2958","peg","scaffold339|size560_493_206",493,206,"-","hypothetical protein","NA","NA"]
["scaffold33|size1716","fig|6666666.156949.peg.2959","peg","scaffold33|size1716_369_1112",369,1112,"+","hypothetical protein","NA","NA"]
["scaffold341|size559","fig|6666666.156949.peg.2960","peg","scaffold341|size559_299_478",299,478,"+","Phosphoheptose isomerase (EC 5.3.1.-)","NA","isu;Capsular_heptose_biosynthesis"]
["scaffold347|size557","fig|6666666.156949.peg.2961","peg","scaffold347|size557_249_64",249,64,"-","hypothetical protein sometimes fused to ribosomal protein S6 glutaminyl transferase","FIG00086487","isu;Ribosome_biogenesis_bacterial"]
["scaffold356|size555","fig|6666666.156949.peg.2962","peg","scaffold356|size555_109_432",109,432,"+","Thioredoxin","FIG01318274","idu(4);CBSS-315749.4.peg.3658 idu(4);Glycine_reductase,_sarcosine_reductase_and_betaine_reductase"]
["scaffold35|size1512","fig|6666666.156949.peg.2963","peg","scaffold35|size1512_931_311",931,311,"-","hypothetical protein","NA","NA"]
["scaffold363|size553","fig|6666666.156949.peg.2964","peg","scaffold363|size553_500_372",500,372,"-","FIG01111237: hypothetical protein","FIG01111236","NA"]
["scaffold36|size1502","fig|6666666.156949.peg.2965","peg","scaffold36|size1502_1445_855",1445,855,"-","hypothetical protein","NA","NA"]
["scaffold372|size549","fig|6666666.156949.peg.2966","peg","scaffold372|size549_53_505",53,505,"+","FIG01122858: hypothetical protein","FIG01122857","NA"]
["scaffold378|size545","fig|6666666.156949.peg.2967","peg","scaffold378|size545_417_304",417,304,"-","hypothetical protein","NA","NA"]
["scaffold379|size545","fig|6666666.156949.peg.2968","peg","scaffold379|size545_160_480",160,480,"+","putative transcriptional regulator, LysR family","NA","NA"]
["scaffold37|size1475","fig|6666666.156949.rna.53","rna","scaffold37|size1475_162_233",162,233,"+","tRNA-Val-GAC","NA","NA"]
["scaffold37|size1475","fig|6666666.156949.rna.54","rna","scaffold37|size1475_424_1475",424,1475,"+","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold389|size543","fig|6666666.156949.peg.2969","peg","scaffold389|size543_528_25",528,25,"-","Outer membrane protein","NA","NA"]
["scaffold38|size1423","fig|6666666.156949.peg.2970","peg","scaffold38|size1423_27_149",27,149,"+","hypothetical protein","NA","NA"]
["scaffold391|size542","fig|6666666.156949.peg.2971","peg","scaffold391|size542_422_306",422,306,"-","hypothetical protein","NA","NA"]
["scaffold393|size542","fig|6666666.156949.peg.2972","peg","scaffold393|size542_418_251",418,251,"-","hypothetical protein","NA","NA"]
["scaffold398|size540","fig|6666666.156949.peg.2973","peg","scaffold398|size540_237_106",237,106,"-","hypothetical protein","NA","NA"]
["scaffold399|size540","fig|6666666.156949.peg.2974","peg","scaffold399|size540_506_279",506,279,"-","FAD dependent oxidoreductase","FIG00453665","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.55","rna","scaffold3|size428649_285_1",285,1,"-","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.56","rna","scaffold3|size428649_517_447",517,447,"-","tRNA-Gly-TCC","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.57","rna","scaffold3|size428649_607_534",607,534,"-","tRNA-Arg-ACG","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2975","peg","scaffold3|size428649_934_1788",934,1788,"+","catalase, Mn-containing","FIG01391359","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2976","peg","scaffold3|size428649_2935_1847",2935,1847,"-","Mannan endo-1,4-beta-mannosidase precursor (EC 3.2.1.78)","FIG01962402","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2977","peg","scaffold3|size428649_3901_2954",3901,2954,"-","Mannose-6-phosphate isomerase (EC 5.3.1.8)","FIG00598409","idu(2);Mannose_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.2978","peg","scaffold3|size428649_4797_3898",4797,3898,"-","Fructokinase (EC 2.7.1.4)","FIG00001653","idu(1);Sucrose_utilization idu(1);Fructose_utilization idu(1);Mannitol_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.2979","peg","scaffold3|size428649_5539_4826",5539,4826,"-","Transcriptional regulator, GntR family","FIG00621925","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2980","peg","scaffold3|size428649_7085_5688",7085,5688,"-","Beta-glucosidase (EC 3.2.1.21)","FIG00001469","idu(1);Fructooligosaccharides(FOS)_and_Raffinose_Utilization icw(3);Beta-Glucoside_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.2981","peg","scaffold3|size428649_8431_7103",8431,7103,"-","PTS system, cellobiose-specific IIC component (EC 2.7.1.69)","FIG00029916","icw(1);Beta-Glucoside_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.2982","peg","scaffold3|size428649_8782_8450",8782,8450,"-","PTS system, cellobiose-specific IIA component (EC 2.7.1.69)","FIG00011115","icw(2);Beta-Glucoside_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.2983","peg","scaffold3|size428649_9093_8782",9093,8782,"-","PTS system, cellobiose-specific IIB component (EC 2.7.1.69)","FIG00000704","idu(1);Beta-Glucoside_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.2984","peg","scaffold3|size428649_9426_10592",9426,10592,"+","L-Proline/Glycine betaine transporter ProP","FIG00061305","idu(4);Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.2985","peg","scaffold3|size428649_11174_10605",11174,10605,"-","DUF1541 domain-containing protein","FIG01372349","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2986","peg","scaffold3|size428649_12345_11368",12345,11368,"-","Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1)","FIG00023004","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2987","peg","scaffold3|size428649_12432_12911",12432,12911,"+","acetyltransferase, GNAT family","FIG01315364","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2988","peg","scaffold3|size428649_12930_13427",12930,13427,"+","FIG01228614: hypothetical protein","FIG01228611","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2989","peg","scaffold3|size428649_13874_13503",13874,13503,"-","FIG01239131: hypothetical protein","FIG01239128","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2990","peg","scaffold3|size428649_14206_15594",14206,15594,"+","Alkaline phosphatase (EC 3.1.3.1)","FIG00000766","idu(1);Phosphate_metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.2991","peg","scaffold3|size428649_15618_16370",15618,16370,"+","Uncharacterized protein ydhF precursor","FIG01234945","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2992","peg","scaffold3|size428649_17596_16409",17596,16409,"-","glycosyl transferase, putative","FIG01226397","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2993","peg","scaffold3|size428649_19020_17758",19020,17758,"-","Spore protein YdhD, not involved in spore germination","FIG00144674","isu;Spore_germination"]
["scaffold3|size428649","fig|6666666.156949.peg.2994","peg","scaffold3|size428649_19821_19147",19821,19147,"-","predicted biotin regulatory protein BioR (GntR family)","FIG00079247","isu;Biotin_biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.2995","peg","scaffold3|size428649_20070_20807",20070,20807,"+","FIG01231844: hypothetical protein","FIG01231842","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2996","peg","scaffold3|size428649_22052_20844",22052,20844,"-","Bicyclomycin resistance protein","FIG00452786","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2997","peg","scaffold3|size428649_22423_22857",22423,22857,"+","Uncharacterized HTH-type transcriptional regulator ydgJ","FIG01234198","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2998","peg","scaffold3|size428649_22873_23502",22873,23502,"+","Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34)","FIG00731724","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.2999","peg","scaffold3|size428649_26303_23631",26303,23631,"-","MMPL","FIG01710832","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3000","peg","scaffold3|size428649_26758_26300",26758,26300,"-","regulatory protein, MarR","FIG00512921","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3001","peg","scaffold3|size428649_26927_27445",26927,27445,"+","DNA polymerase, DinB family","FIG01318574","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3002","peg","scaffold3|size428649_27613_27494",27613,27494,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3003","peg","scaffold3|size428649_27617_28993",27617,28993,"+","D-serine/D-alanine/glycine transporter","FIG00003984","idu(2);Glycine_and_Serine_Utilization idu(2);Pyruvate_Alanine_Serine_Interconversions"]
["scaffold3|size428649","fig|6666666.156949.peg.3004","peg","scaffold3|size428649_29313_30959",29313,30959,"+","ABC transporter, ATP-binding protein, putative","FIG01228035","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3005","peg","scaffold3|size428649_31593_31120",31593,31120,"-","YycN","FIG01231135","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3006","peg","scaffold3|size428649_32099_31755",32099,31755,"-","FIG01232202: hypothetical protein","FIG01232200","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3007","peg","scaffold3|size428649_32695_32096",32695,32096,"-","Transcriptional regulator, TetR family","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3008","peg","scaffold3|size428649_33052_33324",33052,33324,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3009","peg","scaffold3|size428649_33338_33580",33338,33580,"+","FIG01253263: hypothetical protein","FIG01347947","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3010","peg","scaffold3|size428649_33593_34024",33593,34024,"+","FIG01225817: hypothetical protein","FIG01225816","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3011","peg","scaffold3|size428649_34747_34544,scaffold3|size428649_34542_34039",34747,34039,"-","YdfS","FIG01582096","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3012","peg","scaffold3|size428649_34920_34744",34920,34744,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3013","peg","scaffold3|size428649_34955_35539",34955,35539,"+","FIG01235956: hypothetical protein","FIG01235953","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3014","peg","scaffold3|size428649_35661_35891",35661,35891,"+","FIG01225445: hypothetical protein","FIG01225443","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3015","peg","scaffold3|size428649_36081_35941",36081,35941,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3016","peg","scaffold3|size428649_36302_36183",36302,36183,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3017","peg","scaffold3|size428649_36422_36658",36422,36658,"+","FIG01245794: hypothetical protein","FIG01695998","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3018","peg","scaffold3|size428649_37048_36710",37048,36710,"-","Thioredoxin","FIG01970755","idu(4);CBSS-315749.4.peg.3658 idu(4);Glycine_reductase,_sarcosine_reductase_and_betaine_reductase"]
["scaffold3|size428649","fig|6666666.156949.peg.3019","peg","scaffold3|size428649_37079_37237",37079,37237,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3020","peg","scaffold3|size428649_37623_37234",37623,37234,"-","Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD","FIG00002298","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3021","peg","scaffold3|size428649_38660_37722",38660,37722,"-","Glyoxalase family protein","FIG00007915","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3022","peg","scaffold3|size428649_39296_38676",39296,38676,"-","Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34)","FIG00731724","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3023","peg","scaffold3|size428649_39771_40664",39771,40664,"+","Cobalt-zinc-cadmium resistance protein","FIG00000207","idu(1);Cobalt-zinc-cadmium_resistance"]
["scaffold3|size428649","fig|6666666.156949.peg.3024","peg","scaffold3|size428649_40776_41588",40776,41588,"+","transcriptional regulator, MerR family","FIG00482799","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3025","peg","scaffold3|size428649_41678_42367",41678,42367,"+","putative transport protein","FIG01046362","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3026","peg","scaffold3|size428649_42570_43472",42570,43472,"+","carboxylesterase (EC 3.1.1.1) NP","FIG01340524","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3027","peg","scaffold3|size428649_46055_43884",46055,43884,"-","Putative antibiotic transport-associated protein","FIG00016917","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3028","peg","scaffold3|size428649_46812_46171",46812,46171,"-","DNA-binding response regulator","FIG01031438","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3029","peg","scaffold3|size428649_47968_46805",47968,46805,"-","sensor histidine kinase, putative","FIG01225528","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3030","peg","scaffold3|size428649_48296_48439",48296,48439,"+","FIG01241264: hypothetical protein","FIG01241262","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3031","peg","scaffold3|size428649_48701_49144",48701,49144,"+","4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein","FIG01339293","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3032","peg","scaffold3|size428649_49905_49225",49905,49225,"-","Transcriptional regulator, ArsR family","FIG00003845","idu(4);CBSS-1085.1.peg.1363"]
["scaffold3|size428649","fig|6666666.156949.peg.3033","peg","scaffold3|size428649_49995_50618",49995,50618,"+","BH0392 unknown conserved protein in B. subtilis","FIG01239279","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3034","peg","scaffold3|size428649_51174_52181",51174,52181,"+","Glutamate decarboxylase, eukaryotic type (EC 4.1.1.15)","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3035","peg","scaffold3|size428649_53697_52249",53697,52249,"-","Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)","FIG00005520","idu(7);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(7);Threonine_and_Homoserine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3036","peg","scaffold3|size428649_53830_54732",53830,54732,"+","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","idu(11);Queuosine-Archaeosine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3037","peg","scaffold3|size428649_54907_55677",54907,55677,"+","Alkaline phosphatase synthesis transcriptional regulatory protein PhoP","FIG00009996","icw(1);High_affinity_phosphate_transporter_and_control_of_PHO_regulon idu(1);Phosphate_metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3038","peg","scaffold3|size428649_55681_57129",55681,57129,"+","Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)","FIG00073301","idu(1);PhoR-PhoB_two-component_regulatory_system idu(1);High_affinity_phosphate_transporter_and_control_of_PHO_regulon icw(1);Phosphate_metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3039","peg","scaffold3|size428649_57126_58265",57126,58265,"+","FIG01244194: hypothetical protein","FIG01866520","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3040","peg","scaffold3|size428649_58542_59339",58542,59339,"+","Peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-)","FIG00009450","idu(2);Polysaccharide_deacetylases"]
["scaffold3|size428649","fig|6666666.156949.peg.3041","peg","scaffold3|size428649_59467_60381",59467,60381,"+","Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)","FIG00003844","idu(3);Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators"]
["scaffold3|size428649","fig|6666666.156949.peg.3042","peg","scaffold3|size428649_61233_60451",61233,60451,"-","FIG01238978: hypothetical protein","FIG01238977","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3043","peg","scaffold3|size428649_61164_61313",61164,61313,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3044","peg","scaffold3|size428649_61607_61479",61607,61479,"-","Arsenate reductase (EC 1.20.4.1)","FIG00000770","idu(1);Transcription_repair_cluster idu(1);CBSS-315749.4.peg.3658 icw(2);Arsenic_resistance idu(1);Anaerobic_respiratory_reductases"]
["scaffold3|size428649","fig|6666666.156949.peg.3045","peg","scaffold3|size428649_63047_61740",63047,61740,"-","Arsenic efflux pump protein","FIG00081580","icw(1);Arsenic_resistance"]
["scaffold3|size428649","fig|6666666.156949.peg.3046","peg","scaffold3|size428649_63395_63060",63395,63060,"-","Arsenical resistance operon repressor","FIG01124301","isu;Arsenic_resistance"]
["scaffold3|size428649","fig|6666666.156949.peg.3047","peg","scaffold3|size428649_64841_63969",64841,63969,"-","membrane protein, putative","FIG00439698","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3048","peg","scaffold3|size428649_65096_65425",65096,65425,"+","Transcriptional regulator, MarR family; Cinnamoyl ester hydrolase","FIG01372763","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3049","peg","scaffold3|size428649_65481_66080",65481,66080,"+","FIG01233850: hypothetical protein","FIG01233848","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3050","peg","scaffold3|size428649_66558_66133",66558,66133,"-","FIG01238107: hypothetical protein","FIG01371342","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3051","peg","scaffold3|size428649_68149_66752",68149,66752,"-","Predicted transcriptional regulator of pyridoxine metabolism","FIG00008736","idu(1);Pyridoxin_(Vitamin_B6)_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3052","peg","scaffold3|size428649_68298_69161",68298,69161,"+","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","idu(11);Queuosine-Archaeosine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3053","peg","scaffold3|size428649_69427_69305",69427,69305,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3054","peg","scaffold3|size428649_69575_70246",69575,70246,"+","FIG01238735: hypothetical protein","FIG01238734","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3055","peg","scaffold3|size428649_71191_70598",71191,70598,"-","DUF1801 domain-containing protein","FIG00007327","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3056","peg","scaffold3|size428649_71802_71428",71802,71428,"-","unknown","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3057","peg","scaffold3|size428649_73322_72033",73322,72033,"-","Tetracycline resistance protein","FIG01238557","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3058","peg","scaffold3|size428649_74823_73435",74823,73435,"-","Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)","FIG00005520","idu(7);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(7);Threonine_and_Homoserine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3059","peg","scaffold3|size428649_75050_75922",75050,75922,"+","Transcriptional regulator, AraC family","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3060","peg","scaffold3|size428649_77035_76076",77035,76076,"-","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","icw(1);Queuosine-Archaeosine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3061","peg","scaffold3|size428649_77148_78029",77148,78029,"+","Transcriptional regulator, AraC family","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3062","peg","scaffold3|size428649_78267_79130",78267,79130,"+","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","icw(1);Queuosine-Archaeosine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3063","peg","scaffold3|size428649_79330_79539",79330,79539,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3064","peg","scaffold3|size428649_79775_80251",79775,80251,"+","CarD-like transcriptional regulator","FIG00648631","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3065","peg","scaffold3|size428649_81133_80933",81133,80933,"-","Cold shock protein CspA","NA","isu;Cold_shock,_CspA_family_of_proteins"]
["scaffold3|size428649","fig|6666666.156949.peg.3066","peg","scaffold3|size428649_81842_82870",81842,82870,"+","Delta5 acyl-lipid desaturase (EC 1.14.99.-)","FIG01236102","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3067","peg","scaffold3|size428649_83441_83265",83441,83265,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3068","peg","scaffold3|size428649_85546_84371",85546,84371,"-","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3069","peg","scaffold3|size428649_87164_85773",87164,85773,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3070","peg","scaffold3|size428649_88257_87157",88257,87157,"-","serine/threonine kinase","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3071","peg","scaffold3|size428649_88948_88556",88948,88556,"-","FIG01240560: hypothetical protein","FIG01315413","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3072","peg","scaffold3|size428649_89501_89274,scaffold3|size428649_89274_89002",89501,89002,"-","Uncharacterized protein yddI","FIG01348390","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3073","peg","scaffold3|size428649_90376_89516",90376,89516,"-","Uncharacterized protein yddH precursor","FIG01232267","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.58","rna","scaffold3|size428649_90760_90677",90760,90677,"-","tRNA-Leu-GAG","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.59","rna","scaffold3|size428649_90923_90842",90923,90842,"-","tRNA-Leu-TAG","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.60","rna","scaffold3|size428649_91010_90938",91010,90938,"-","tRNA-Lys-TTT","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.61","rna","scaffold3|size428649_91112_91041",91112,91041,"-","tRNA-Gln-TTG","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.62","rna","scaffold3|size428649_91195_91124",91195,91124,"-","tRNA-Glu-TTC","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.63","rna","scaffold3|size428649_91315_91228",91315,91228,"-","tRNA-Ser-GCT","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.64","rna","scaffold3|size428649_91394_91323",91394,91323,"-","tRNA-Asn-GTT","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3074","peg","scaffold3|size428649_91969_91517",91969,91517,"-","Putative metallopeptidase (Zinc) SprT family","FIG00001747","icw(1);CBSS-393131.3.peg.612"]
["scaffold3|size428649","fig|6666666.156949.peg.3075","peg","scaffold3|size428649_92073_92186",92073,92186,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3076","peg","scaffold3|size428649_94355_92196",94355,92196,"-","Transcription accessory protein (S1 RNA-binding domain)","FIG00001712","isu;Cell_division-ribosomal_stress_proteins_cluster isu;CBSS-393131.3.peg.612 isu;CBSS-243265.1.peg.198 isu;Transcription_factors_bacterial"]
["scaffold3|size428649","fig|6666666.156949.peg.3077","peg","scaffold3|size428649_95062_94463",95062,94463,"-","Phosphoserine phosphatase RsbX (EC 3.1.3.3)","FIG00501779","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3078","peg","scaffold3|size428649_95850_95062",95850,95062,"-","RNA polymerase sigma factor SigB","FIG00132885","icw(4);SigmaB_stress_responce_regulation isu;Transcription_initiation,_bacterial_sigma_factors isu;Methicillin_resistance_in_Staphylococci"]
["scaffold3|size428649","fig|6666666.156949.peg.3079","peg","scaffold3|size428649_96298_95816",96298,95816,"-","Serine-protein kinase RsbW (EC 2.7.11.1)","FIG01955836","icw(1);SigmaB_stress_responce_regulation"]
["scaffold3|size428649","fig|6666666.156949.peg.3080","peg","scaffold3|size428649_96624_96295",96624,96295,"-","Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV","FIG00103613","icw(5);SigmaB_stress_responce_regulation"]
["scaffold3|size428649","fig|6666666.156949.peg.3081","peg","scaffold3|size428649_97700_96693",97700,96693,"-","Serine phosphatase RsbU, regulator of sigma subunit","FIG00017431","icw(2);SigmaB_stress_responce_regulation"]
["scaffold3|size428649","fig|6666666.156949.peg.3082","peg","scaffold3|size428649_98113_97712",98113,97712,"-","anti-sigma B factor RsbT","FIG00002380","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3083","peg","scaffold3|size428649_98482_98117",98482,98117,"-","RsbS, negative regulator of sigma-B","FIG00002556","isu;SigmaB_stress_responce_regulation"]
["scaffold3|size428649","fig|6666666.156949.peg.3084","peg","scaffold3|size428649_99308_98487",99308,98487,"-","RsbR, positive regulator of sigma-B","FIG00001285","icw(3);SigmaB_stress_responce_regulation"]
["scaffold3|size428649","fig|6666666.156949.peg.3085","peg","scaffold3|size428649_99777_99427",99777,99427,"-","Programmed cell death toxin YdcE","FIG00009628","isu;Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems isu;MazEF_toxin-antitoxing_(programmed_cell_death)_system"]
["scaffold3|size428649","fig|6666666.156949.peg.3086","peg","scaffold3|size428649_100063_99782",100063,99782,"-","Programmed cell death antitoxin YdcD","FIG00008524","icw(1);Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems icw(1);MazEF_toxin-antitoxing_(programmed_cell_death)_system"]
["scaffold3|size428649","fig|6666666.156949.peg.3087","peg","scaffold3|size428649_101348_100179",101348,100179,"-","Alanine racemase (EC 5.1.1.1)","FIG00001642","idu(1);Pyruvate_Alanine_Serine_Interconversions idu(1);Alanine_biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3088","peg","scaffold3|size428649_102584_101463",102584,101463,"-","outer membrane lipoprotein receptor","FIG01315500","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3089","peg","scaffold3|size428649_103010_102645",103010,102645,"-","Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)","FIG00000540","isu;CBSS-176299.4.peg.1292 isu;Fatty_Acid_Biosynthesis_FASII"]
["scaffold3|size428649","fig|6666666.156949.peg.3090","peg","scaffold3|size428649_103105_103704",103105,103704,"+","GlpG protein (membrane protein of glp regulon)","FIG00001436","isu;Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3091","peg","scaffold3|size428649_105179_103701",105179,103701,"-","Hypothetical protein, ydbT homolog","FIG00002009","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3092","peg","scaffold3|size428649_105651_105172",105651,105172,"-","Hypothetical protein, ydbS homolog","FIG00001940","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3093","peg","scaffold3|size428649_107248_105824",107248,105824,"-","DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13)","FIG00001381","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3094","peg","scaffold3|size428649_109153_107708",109153,107708,"-","UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)","FIG00024401","isu;Peptidoglycan_Biosynthesis icw(1);Peptidoglycan_biosynthesis--gjo isu;Methicillin_resistance_in_Staphylococci"]
["scaffold3|size428649","fig|6666666.156949.peg.3095","peg","scaffold3|size428649_110238_109153",110238,109153,"-","D-alanine--D-alanine ligase (EC 6.3.2.4)","FIG00000350","isu;cell_division_cluster_containing_FtsQ icw(1);Peptidoglycan_Biosynthesis isu;Peptidoglycan_biosynthesis--gjo"]
["scaffold3|size428649","fig|6666666.156949.peg.3096","peg","scaffold3|size428649_110392_110712",110392,110712,"+","Thioredoxin","FIG01970755","idu(4);CBSS-315749.4.peg.3658 idu(4);Glycine_reductase,_sarcosine_reductase_and_betaine_reductase"]
["scaffold3|size428649","fig|6666666.156949.peg.3097","peg","scaffold3|size428649_111599_110727",111599,110727,"-","Cobalt-zinc-cadmium resistance protein","FIG00000207","idu(1);Cobalt-zinc-cadmium_resistance"]
["scaffold3|size428649","fig|6666666.156949.peg.3098","peg","scaffold3|size428649_111847_112011",111847,112011,"+","FIG01234611: hypothetical protein","FIG01438391","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3099","peg","scaffold3|size428649_111998_112144",111998,112144,"+","unknown","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3100","peg","scaffold3|size428649_113312_112167",113312,112167,"-","Butyryl-CoA dehydrogenase (EC 1.3.99.2)","FIG00009149","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3101","peg","scaffold3|size428649_113777_113442",113777,113442,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3102","peg","scaffold3|size428649_114639_113872",114639,113872,"-","ABC transporter, permease protein","FIG01288623","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3103","peg","scaffold3|size428649_115558_114632",115558,114632,"-","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3104","peg","scaffold3|size428649_115715_115551",115715,115551,"-","FIG01230322: hypothetical protein","FIG01230321","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3105","peg","scaffold3|size428649_116887_115835",116887,115835,"-","membrane protein, putative","FIG00439698","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3106","peg","scaffold3|size428649_118301_117036",118301,117036,"-","Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate","NA","icw(1);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold3|size428649","fig|6666666.156949.peg.3107","peg","scaffold3|size428649_119102_118422",119102,118422,"-","Fumarate respiration transcriptional regulator DcuR","FIG00004047","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3108","peg","scaffold3|size428649_120699_119092",120699,119092,"-","Two-component sensor histidine kinase, malate (EC 2.7.3.-)","FIG00002133","idu(1);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold3|size428649","fig|6666666.156949.peg.3109","peg","scaffold3|size428649_120769_121821",120769,121821,"+","TRAP-type C4-dicarboxylate transport system, periplasmic component","FIG00016663","isu;TRAP_Transporter_collection"]
["scaffold3|size428649","fig|6666666.156949.peg.3110","peg","scaffold3|size428649_121906_122727",121906,122727,"+","Catalase (EC 1.11.1.6)","FIG00000313","idu(4);Oxidative_stress idu(4);Protection_from_Reactive_Oxygen_Species"]
["scaffold3|size428649","fig|6666666.156949.peg.3111","peg","scaffold3|size428649_123123_122764",123123,122764,"-","FIG01233806: hypothetical protein","FIG01233805","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3112","peg","scaffold3|size428649_123458_123117",123458,123117,"-","FIG01232094: hypothetical protein","FIG01232093","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3113","peg","scaffold3|size428649_123961_123590",123961,123590,"-","Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)","FIG00133002","idu(4);Pyridoxin_(Vitamin_B6)_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3114","peg","scaffold3|size428649_124908_124090",124908,124090,"-","YdbA","FIG01247603","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3115","peg","scaffold3|size428649_124966_125478",124966,125478,"+","unknown","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3116","peg","scaffold3|size428649_125556_125813",125556,125813,"+","Integral membrane protein","FIG01956050","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3117","peg","scaffold3|size428649_126046_127320",126046,127320,"+","Manganese transport protein MntH","FIG00554286","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3118","peg","scaffold3|size428649_127420_127689",127420,127689,"+","FIG01227174: hypothetical protein","FIG01227172","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3119","peg","scaffold3|size428649_129614_127890",129614,127890,"-","Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2)","FIG00001377","isu;Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold3|size428649","fig|6666666.156949.peg.3120","peg","scaffold3|size428649_130130_129681",130130,129681,"-","mutT/nudix family protein","FIG01308524","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3121","peg","scaffold3|size428649_132012_130189",132012,130189,"-","Amino acid permease","FIG01345058","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3122","peg","scaffold3|size428649_134595_132484",134595,132484,"-","FIG01232331: hypothetical protein","FIG01232330","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3123","peg","scaffold3|size428649_135863_134601",135863,134601,"-","Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster","FIG00543846","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3124","peg","scaffold3|size428649_137586_135856",137586,135856,"-","FIG01238801: hypothetical protein","FIG01238800","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3125","peg","scaffold3|size428649_138427_137576",138427,137576,"-","GGDEF domain protein","FIG00450572","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3126","peg","scaffold3|size428649_139496_138408",139496,138408,"-","FIG01227715: hypothetical protein","FIG01227713","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3127","peg","scaffold3|size428649_141882_139699",141882,139699,"-","DNA topoisomerase III (EC 5.99.1.2)","FIG00000578","isu;DNA_topoisomerases,_Type_I,_ATP-independent isu;DNA_processing_cluster"]
["scaffold3|size428649","fig|6666666.156949.peg.3128","peg","scaffold3|size428649_142381_141947",142381,141947,"-","Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system","FIG00003800","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(1);Branched-Chain_Amino_Acid_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3129","peg","scaffold3|size428649_142566_142856",142566,142856,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3130","peg","scaffold3|size428649_143709_142900",143709,142900,"-","ABC-type sugar transport systems, permease components","FIG01124750","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3131","peg","scaffold3|size428649_144637_144215",144637,144215,"-","General stress protein 26","FIG01331054","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3132","peg","scaffold3|size428649_145266_144718,scaffold3|size428649_144714_144694",145266,144694,"-","Ribosomal-protein-L7p-serine acetyltransferase","FIG00054478","isu;Ribosome_biogenesis_bacterial"]
["scaffold3|size428649","fig|6666666.156949.peg.3133","peg","scaffold3|size428649_145857_145354",145857,145354,"-","D-lyxose isomerase (EC 5.3.1.15)","FIG01345843","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3134","peg","scaffold3|size428649_146733_145873",146733,145873,"-","oxidoreductase, short chain dehydrogenase/reductase family","FIG01345757","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3135","peg","scaffold3|size428649_146888_147484",146888,147484,"+","FIG01230639: hypothetical protein","FIG01230638","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3136","peg","scaffold3|size428649_149015_147504",149015,147504,"-","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","NA","idu(2);n-Phenylalkanoic_acid_degradation idu(2);Fatty_acid_metabolism_cluster idu(2);Biotin_biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3137","peg","scaffold3|size428649_149254_149111",149254,149111,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3138","peg","scaffold3|size428649_151311_149227",151311,149227,"-","Mannitol operon activator, BglG family","FIG00003678","isu;Mannitol_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3139","peg","scaffold3|size428649_152399_151497",152399,151497,"-","oxidoreductase, aldo/keto reductase family","FIG01327425","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3140","peg","scaffold3|size428649_154506_152500",154506,152500,"-","Penicillin-binding protein 3","FIG01955947","isu;CBSS-83331.1.peg.3039 isu;16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold3|size428649","fig|6666666.156949.peg.3141","peg","scaffold3|size428649_154657_154944",154657,154944,"+","Antibiotic biosynthesis monooxygenase","FIG00027695","isu;CBSS-1085.1.peg.1363"]
["scaffold3|size428649","fig|6666666.156949.peg.3142","peg","scaffold3|size428649_155195_154950",155195,154950,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3143","peg","scaffold3|size428649_156009_155368",156009,155368,"-","YcsK","FIG01234395","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3144","peg","scaffold3|size428649_156825_156073",156825,156073,"-","Kip operon repressor, IclR family","FIG01229690","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3145","peg","scaffold3|size428649_158573_157884,scaffold3|size428649_157882_157709,scaffold3|size428649_157707_157330,scaffold3|size428649_157330_157202,scaffold3|size428649_157200_156841",158573,156841,"-","Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) / Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)","FIG00229244","isu;CBSS-279010.5.peg.587 isu;CBSS-279010.5.peg.587 isu;EC699-706 isu;EC699-706"]
["scaffold3|size428649","fig|6666666.156949.peg.3146","peg","scaffold3|size428649_159409_158618",159409,158618,"-","hypothetical protein possibly connected to lactam utilization and allophanate hydrolase","FIG00148988","icw(1);CBSS-279010.5.peg.587"]
["scaffold3|size428649","fig|6666666.156949.peg.3147","peg","scaffold3|size428649_160629_159415",160629,159415,"-","Mn2+/Fe2+ transporter, NRAMP family","FIG00010157","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3148","peg","scaffold3|size428649_161417_160644",161417,160644,"-","Lactam utilization protein LamB","FIG00003076","isu;CBSS-279010.5.peg.587 isu;EC699-706"]
["scaffold3|size428649","fig|6666666.156949.peg.3149","peg","scaffold3|size428649_162372_161626,scaffold3|size428649_161622_161557",162372,161557,"-","HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217)","FIG00002113","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3150","peg","scaffold3|size428649_163094_162864,scaffold3|size428649_162862_162575",163094,162575,"-","3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)","FIG00000393","idu(1);Fatty_Acid_Biosynthesis_FASII"]
["scaffold3|size428649","fig|6666666.156949.peg.3151","peg","scaffold3|size428649_163180_163788",163180,163788,"+","Uncharacterized protein yczH","FIG01238653","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3152","peg","scaffold3|size428649_164282_163857",164282,163857,"-","Signal peptidase I (EC 3.4.21.89)","FIG00000015","idu(3);Signal_peptidase idu(3);CBSS-176299.4.peg.1292"]
["scaffold3|size428649","fig|6666666.156949.peg.3153","peg","scaffold3|size428649_164469_164293",164469,164293,"-","FIG01229419: hypothetical protein","FIG01229418","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3154","peg","scaffold3|size428649_165612_164554",165612,164554,"-","Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83)","FIG00001336","isu;Glycerate_metabolism isu;Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold3|size428649","fig|6666666.156949.peg.3155","peg","scaffold3|size428649_166830_166012,scaffold3|size428649_166012_165998,scaffold3|size428649_165994_165929,scaffold3|size428649_165922_165896,scaffold3|size428649_165894_165709",166830,165709,"-","Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)","FIG00001427","isu;Mannitol_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3156","peg","scaffold3|size428649_168724_167543,scaffold3|size428649_167541_167524,scaffold3|size428649_167524_167291,scaffold3|size428649_167287_166832",168724,166832,"-","PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component","FIG00132803","isu;Mannitol_Utilization isu;Mannitol_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3157","peg","scaffold3|size428649_169250_168897",169250,168897,"-","Reductase or disulfide isomerase in copper uptake, YcnL","FIG01225546","icw(1);Copper_Transport_System"]
["scaffold3|size428649","fig|6666666.156949.peg.3158","peg","scaffold3|size428649_169415_169987",169415,169987,"+","DNA for 25-36 DEGREE region containing the AMYE-SRFA region, complete CDS","FIG01388768","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3159","peg","scaffold3|size428649_170022_171647",170022,171647,"+","Copper resistance protein D","FIG00001556","isu;Copper_homeostasis"]
["scaffold3|size428649","fig|6666666.156949.peg.3160","peg","scaffold3|size428649_171660_172274",171660,172274,"+","Conserved membrane protein in copper uptake, YcnI","FIG00443089","isu;Copper_Transport_System"]
["scaffold3|size428649","fig|6666666.156949.peg.3161","peg","scaffold3|size428649_173103_172318",173103,172318,"-","Glucose 1-dehydrogenase (EC 1.1.1.47)","FIG00009828","idu(2);Entner-Doudoroff_Pathway idu(2);D-gluconate_and_ketogluconates_metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3162","peg","scaffold3|size428649_173986_173123",173986,173123,"-","glucose uptake protein","FIG01308332","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3163","peg","scaffold3|size428649_175496_174108",175496,174108,"-","Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3164","peg","scaffold3|size428649_176875_175565",176875,175565,"-","Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)","FIG01259740","idu(1);Putrescine_utilization_pathways"]
["scaffold3|size428649","fig|6666666.156949.peg.3165","peg","scaffold3|size428649_176982_178421",176982,178421,"+","Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain)","FIG00016055","isu;Threonine_degradation"]
["scaffold3|size428649","fig|6666666.156949.peg.3166","peg","scaffold3|size428649_178737_178423",178737,178423,"-","Transcriptional regulator, ArsR family","FIG00003845","idu(4);CBSS-1085.1.peg.1363"]
["scaffold3|size428649","fig|6666666.156949.peg.3167","peg","scaffold3|size428649_178877_179164",178877,179164,"+","FIG01231880: hypothetical protein","FIG01231878","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3168","peg","scaffold3|size428649_179181_179930",179181,179930,"+","Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-)","FIG00904859","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3169","peg","scaffold3|size428649_180066_180971",180066,180971,"+","Transcriptional regulator, TetR family","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3170","peg","scaffold3|size428649_180991_182409",180991,182409,"+","FIG01240554: hypothetical protein","FIG01581548","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3171","peg","scaffold3|size428649_183409_182456",183409,182456,"-","Uncharacterized iron compound ABC uptake transporter, substrate-binding protein","FIG00148947","isu;Heme,_hemin_uptake_and_utilization_systems_in_GramPositives icw(2);Siderophore_Anthrachelin"]
["scaffold3|size428649","fig|6666666.156949.peg.3172","peg","scaffold3|size428649_184189_183431",184189,183431,"-","Uncharacterized iron compound ABC uptake transporter, ATP-binding protein","FIG00148913","icw(1);Heme,_hemin_uptake_and_utilization_systems_in_GramPositives icw(3);Siderophore_Anthrachelin"]
["scaffold3|size428649","fig|6666666.156949.peg.3173","peg","scaffold3|size428649_185130_184183",185130,184183,"-","Uncharacterized iron compound ABC uptake transporter, permease protein","FIG01117646","icw(3);Heme,_hemin_uptake_and_utilization_systems_in_GramPositives icw(1);Siderophore_Anthrachelin"]
["scaffold3|size428649","fig|6666666.156949.peg.3174","peg","scaffold3|size428649_186073_185123",186073,185123,"-","Uncharacterized iron compound ABC uptake transporter, permease protein","FIG01117646","icw(3);Heme,_hemin_uptake_and_utilization_systems_in_GramPositives icw(1);Siderophore_Anthrachelin"]
["scaffold3|size428649","fig|6666666.156949.peg.3175","peg","scaffold3|size428649_186458_187822",186458,187822,"+","Aspartokinase (EC 2.7.2.4)","FIG00000132","idu(2);Lysine_Biosynthesis_DAP_Pathway idu(2);Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch idu(2);Threonine_and_Homoserine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3176","peg","scaffold3|size428649_187975_188088",187975,188088,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3177","peg","scaffold3|size428649_188137_188259",188137,188259,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3178","peg","scaffold3|size428649_188480_188358",188480,188358,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3179","peg","scaffold3|size428649_189612_188464",189612,188464,"-","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3180","peg","scaffold3|size428649_189643_189795",189643,189795,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3181","peg","scaffold3|size428649_191193_189775",191193,189775,"-","Sensor protein basS/pmrB (EC 2.7.3.-)","FIG00000853","isu;Lipid_A_modifications"]
["scaffold3|size428649","fig|6666666.156949.peg.3182","peg","scaffold3|size428649_191980_191183",191980,191183,"-","DNA-binding response regulator","FIG01031438","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3183","peg","scaffold3|size428649_192079_193533",192079,193533,"+","ABC transporter, permease protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3184","peg","scaffold3|size428649_193549_194229",193549,194229,"+","ABC transporter ATP-binding protein YvcR","FIG00007923","idu(3);Bacitracin_Stress_Response"]
["scaffold3|size428649","fig|6666666.156949.peg.3185","peg","scaffold3|size428649_195455_194334",195455,194334,"-","Spore germination protein GerKB","FIG00001332","icw(2);Spore_germination"]
["scaffold3|size428649","fig|6666666.156949.peg.3186","peg","scaffold3|size428649_196703_195480",196703,195480,"-","Spore germination protein GerKC","FIG00016382","icw(1);Spore_germination"]
["scaffold3|size428649","fig|6666666.156949.peg.3187","peg","scaffold3|size428649_198327_196693",198327,196693,"-","Spore germination protein GerKA","FIG00002489","idu(2);Spore_germination"]
["scaffold3|size428649","fig|6666666.156949.peg.3188","peg","scaffold3|size428649_198453_198674",198453,198674,"+","Uncharacterized protein yczF precursor","FIG01229476","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3189","peg","scaffold3|size428649_200443_198689",200443,198689,"-","FIG01230034: hypothetical protein","FIG01230033","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3190","peg","scaffold3|size428649_200723_202201",200723,202201,"+","Di-/tripeptide transporter","FIG00004528","isu;Proton-dependent_Peptide_Transporters"]
["scaffold3|size428649","fig|6666666.156949.peg.3191","peg","scaffold3|size428649_203087_202242",203087,202242,"-","DNA for 25-36 DEGREE region containing the AMYE-SRFA region, complete CDS","FIG01388768","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3192","peg","scaffold3|size428649_203841_203617,scaffold3|size428649_203617_203153",203841,203153,"-","Hydroxyaromatic non-oxidative decarboxylase protein D (EC 4.1.1.-)","FIG00006766","isu;Hydroxyaromatic_decarboxylase_family"]
["scaffold3|size428649","fig|6666666.156949.peg.3193","peg","scaffold3|size428649_205279_203858",205279,203858,"-","Hydroxyaromatic non-oxidative decarboxylase protein C (EC 4.1.1.-)","FIG00133738","icw(1);Hydroxyaromatic_decarboxylase_family"]
["scaffold3|size428649","fig|6666666.156949.peg.3194","peg","scaffold3|size428649_205896_205282",205896,205282,"-","Hydroxyaromatic non-oxidative decarboxylase protein B (EC 4.1.1.-)","FIG01970554","isu;Hydroxyaromatic_decarboxylase_family"]
["scaffold3|size428649","fig|6666666.156949.peg.3195","peg","scaffold3|size428649_205986_206858",205986,206858,"+","Transcriptional regulator, LysR family","FIG01304134","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3196","peg","scaffold3|size428649_206974_207780",206974,207780,"+","L-Cystine ABC transporter, periplasmic cystine-binding protein TcyA","FIG00088537","icw(1);L-Cystine_Uptake_and_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3197","peg","scaffold3|size428649_207767_208471",207767,208471,"+","L-Cystine ABC transporter, permease protein TcyB","FIG00011002","isu;L-Cystine_Uptake_and_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3198","peg","scaffold3|size428649_208485_209228",208485,209228,"+","L-Cystine ABC transporter, ATP-binding protein TcyC","FIG00008533","icw(2);L-Cystine_Uptake_and_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3199","peg","scaffold3|size428649_209408_209524",209408,209524,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3200","peg","scaffold3|size428649_209549_210196",209549,210196,"+","membrane protein, putative","FIG00439698","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3201","peg","scaffold3|size428649_210301_210975",210301,210975,"+","4'-phosphopantetheinyl transferase (EC 2.7.8.-)","FIG00001501","isu;Fatty_Acid_Biosynthesis_FASII"]
["scaffold3|size428649","fig|6666666.156949.peg.3202","peg","scaffold3|size428649_212265_210970",212265,210970,"-","Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)","FIG00005520","idu(7);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(7);Threonine_and_Homoserine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3203","peg","scaffold3|size428649_212428_213366",212428,213366,"+","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","idu(11);Queuosine-Archaeosine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3204","peg","scaffold3|size428649_213420_213977",213420,213977,"+","FIG01236558: hypothetical protein","FIG01236556","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3205","peg","scaffold3|size428649_215200_213992",215200,213992,"-","FIG01228807: hypothetical protein","FIG01228806","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3206","peg","scaffold3|size428649_216048_215320",216048,215320,"-","Thioesterase","FIG01227594","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3207","peg","scaffold3|size428649_219904_216077",219904,216077,"-","FIG01235430: hypothetical protein","FIG01235429","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3208","peg","scaffold3|size428649_230704_219941",230704,219941,"-","FIG01252006: hypothetical protein","FIG01252001","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3209","peg","scaffold3|size428649_230744_230911",230744,230911,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3210","peg","scaffold3|size428649_231123_231007",231123,231007,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3211","peg","scaffold3|size428649_231105_231299",231105,231299,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3212","peg","scaffold3|size428649_231642_231280",231642,231280,"-","Transcriptional regulator HxlR, formaldehyde assimilation","FIG00037139","isu;Formaldehyde_assimilation:_Ribulose_monophosphate_pathway"]
["scaffold3|size428649","fig|6666666.156949.peg.3213","peg","scaffold3|size428649_231874_232506",231874,232506,"+","D-arabino-3-hexulose 6-phosphate formaldehyde-lyase (EC 4.1.2.43)","FIG00010868","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3214","peg","scaffold3|size428649_232512_233069",232512,233069,"+","6-phospho-3-hexuloisomerase","FIG00002519","icw(1);Formaldehyde_assimilation:_Ribulose_monophosphate_pathway"]
["scaffold3|size428649","fig|6666666.156949.peg.3215","peg","scaffold3|size428649_233179_234900",233179,234900,"+","methyl-accepting chemotaxis protein","FIG01251342","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3216","peg","scaffold3|size428649_235068_235517",235068,235517,"+","competence-specific nuclease","FIG01315444","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3217","peg","scaffold3|size428649_235544_235942",235544,235942,"+","Nin","FIG01229907","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3218","peg","scaffold3|size428649_237412_235979",237412,235979,"-","Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)","NA","idu(1);Fructooligosaccharides(FOS)_and_Raffinose_Utilization idu(3);Beta-Glucoside_Metabolism idu(1);Beta-Glucoside_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3219","peg","scaffold3|size428649_237898_237566",237898,237566,"-","YckD","FIG01236538","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3220","peg","scaffold3|size428649_238435_237980",238435,237980,"-","FIG01229669: hypothetical protein","FIG01229668","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3221","peg","scaffold3|size428649_238825_239676",238825,239676,"+","Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)","FIG00046179","isu;Arginine_and_Ornithine_Degradation"]
["scaffold3|size428649","fig|6666666.156949.peg.3222","peg","scaffold3|size428649_239686_240366",239686,240366,"+","Probable amino-acid ABC transporter permease protein yckA","FIG01230225","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3223","peg","scaffold3|size428649_241608_240415",241608,240415,"-","Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family","FIG00017190","isu;Zinc_regulated_enzymes isu;G3E_family_of_P-loop_GTPases_(metallocenter_biosynthesis)"]
["scaffold3|size428649","fig|6666666.156949.peg.3224","peg","scaffold3|size428649_242502_241918",242502,241918,"-","ErfK/YbiS/YcfS/YnhG superfamily","FIG01232593","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3225","peg","scaffold3|size428649_243413_242499",243413,242499,"-","GTP cyclohydrolase I (EC 3.5.4.16) type 2","FIG00001146","icw(1);Zinc_regulated_enzymes isu;Folate_Biosynthesis isu;Queuosine-Archaeosine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3226","peg","scaffold3|size428649_244735_243824,scaffold3|size428649_243824_243792,scaffold3|size428649_243788_243627,scaffold3|size428649_243627_243469",244735,243469,"-","Nitrate/nitrite transporter","FIG00005529","idu(1);Nitrate_and_nitrite_ammonification"]
["scaffold3|size428649","fig|6666666.156949.peg.3227","peg","scaffold3|size428649_244915_247230",244915,247230,"+","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","FIG00000873","icw(2);Nitrate_and_nitrite_ammonification"]
["scaffold3|size428649","fig|6666666.156949.peg.3228","peg","scaffold3|size428649_247237_249369",247237,249369,"+","Assimilatory nitrate reductase large subunit (EC:1.7.99.4)","FIG00059898","isu;Nitrate_and_nitrite_ammonification"]
["scaffold3|size428649","fig|6666666.156949.peg.3229","peg","scaffold3|size428649_249490_251907",249490,251907,"+","Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)","FIG00000873","icw(2);Nitrate_and_nitrite_ammonification"]
["scaffold3|size428649","fig|6666666.156949.peg.3230","peg","scaffold3|size428649_251939_252259",251939,252259,"+","Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)","FIG00138942","icw(2);Nitrate_and_nitrite_ammonification"]
["scaffold3|size428649","fig|6666666.156949.peg.3231","peg","scaffold3|size428649_252326_253771",252326,253771,"+","Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)","FIG00137145","idu(2);Heme_and_Siroheme_Biosynthesis idu(1);Heme_and_Siroheme_Biosynthesis idu(1);Coenzyme_B12_biosynthesis idu(1);Dissimilatory_nitrite_reductase"]
["scaffold3|size428649","fig|6666666.156949.peg.3232","peg","scaffold3|size428649_254813_253803",254813,253803,"-","Thioredoxin reductase (EC 1.8.1.9)","FIG00018396","idu(3);pyrimidine_conversions idu(3);Glycine_reductase,_sarcosine_reductase_and_betaine_reductase idu(3);Thioredoxin-disulfide_reductase"]
["scaffold3|size428649","fig|6666666.156949.peg.3233","peg","scaffold3|size428649_254973_255827",254973,255827,"+","aromatic hydrocarbon catabolism protein","FIG01233362","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3234","peg","scaffold3|size428649_255909_256811",255909,256811,"+","possible permease","FIG01114374","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3235","peg","scaffold3|size428649_256816_257673",256816,257673,"+","DUF1980 domain-containing protein","FIG01388463","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3236","peg","scaffold3|size428649_258945_257710",258945,257710,"-","Regulator of polyketide synthase expression","FIG00056421","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3237","peg","scaffold3|size428649_260447_259098",260447,259098,"-","Sodium/proline symporter","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3238","peg","scaffold3|size428649_262190_260643",262190,260643,"-","Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88)","NA","isu;Arginine_and_Ornithine_Degradation icw(1);Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3239","peg","scaffold3|size428649_263118_262207",263118,262207,"-","Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)","FIG00002570","idu(1);Respiratory_dehydrogenases_1 idu(1);Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3240","peg","scaffold3|size428649_264090_263308",264090,263308,"-","FIG01230579: hypothetical protein","FIG01230578","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3241","peg","scaffold3|size428649_265132_264176",265132,264176,"-","cephalosporin C deacetylase","FIG01333030","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3242","peg","scaffold3|size428649_266178_265204",266178,265204,"-","Chromosome initiation inhibitor","FIG00002895","isu;LysR-family_proteins_in_Escherichia_coli"]
["scaffold3|size428649","fig|6666666.156949.peg.3243","peg","scaffold3|size428649_266296_267057",266296,267057,"+","SAM-dependent methyltransferase YafE (UbiE paralog)","FIG01238125","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3244","peg","scaffold3|size428649_267645_267085",267645,267085,"-","Shikimate kinase I (EC 2.7.1.71)","FIG00000256","isu;Chorismate_Synthesis isu;Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate) isu;Benzoate_transport_and_degradation_cluster"]
["scaffold3|size428649","fig|6666666.156949.peg.3245","peg","scaffold3|size428649_267786_267899",267786,267899,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3246","peg","scaffold3|size428649_267923_268516",267923,268516,"+","ATP-binding membrane protein","FIG01245174","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3247","peg","scaffold3|size428649_269384_268566",269384,268566,"-","NAD synthetase (EC 6.3.1.5)","FIG00000590","isu;NAD_and_NADP_cofactor_biosynthesis_global"]
["scaffold3|size428649","fig|6666666.156949.peg.3248","peg","scaffold3|size428649_270248_269799,scaffold3|size428649_269797_269759,scaffold3|size428649_269755_269693,scaffold3|size428649_269693_269514",270248,269514,"-","FIG01228731: hypothetical protein","FIG01228729","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3249","peg","scaffold3|size428649_270240_271580",270240,271580,"+","S-methylmethionine permease","FIG00954959","isu;S-methylmethionine"]
["scaffold3|size428649","fig|6666666.156949.peg.3250","peg","scaffold3|size428649_272343_271993,scaffold3|size428649_271988_271983,scaffold3|size428649_271979_271830,scaffold3|size428649_271830_271582",272343,271582,"-","FIG01227711: hypothetical protein","FIG01227709","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3251","peg","scaffold3|size428649_273042_272413",273042,272413,"-","FIG01225350: hypothetical protein","FIG01225349","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3252","peg","scaffold3|size428649_273580_273116",273580,273116,"-","FIG01234072: hypothetical protein","FIG01234071","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3253","peg","scaffold3|size428649_273693_275231",273693,275231,"+","drug resistance transporter, EmrB/QacA family","FIG01265370","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3254","peg","scaffold3|size428649_276900_275275",276900,275275,"-","L-lactate permease","FIG00016061","idu(1);Lactate_utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3255","peg","scaffold3|size428649_277897_276932",277897,276932,"-","L-lactate dehydrogenase (EC 1.1.1.27)","FIG00000812","isu;Fermentations:_Lactate isu;Fermentations:_Mixed_acid"]
["scaffold3|size428649","fig|6666666.156949.peg.3256","peg","scaffold3|size428649_280053_278074",280053,278074,"-","Alpha-amylase (EC 3.2.1.1)","FIG00004763","isu;Trehalose_Biosynthesis isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3257","peg","scaffold3|size428649_280803_280312",280803,280312,"-","FIG01226784: hypothetical protein","FIG01226783","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3258","peg","scaffold3|size428649_282352_280919",282352,280919,"-","transporter, putative","FIG01225794","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3259","peg","scaffold3|size428649_282501_283652",282501,283652,"+","amidohydrolase","FIG01338948","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3260","peg","scaffold3|size428649_284571_283690",284571,283690,"-","Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC","NA","isu;Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3261","peg","scaffold3|size428649_285419_284571",285419,284571,"-","Glycine betaine ABC transport system, permease protein OpuAB","FIG00012283","icw(2);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3262","peg","scaffold3|size428649_286677_285421",286677,285421,"-","Glycine betaine ABC transport system, ATP-binding protein OpuAA (EC 3.6.3.32)","FIG00007729","icw(1);Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3263","peg","scaffold3|size428649_286988_287269",286988,287269,"+","Transcriptional regulator, ArsR family","FIG00003845","idu(4);CBSS-1085.1.peg.1363"]
["scaffold3|size428649","fig|6666666.156949.peg.3264","peg","scaffold3|size428649_287338_288510",287338,288510,"+","multidrug resistance protein, putative","FIG01225669","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3265","peg","scaffold3|size428649_290000_288798",290000,288798,"-","Niacin transporter NiaP","FIG00009989","idu(1);NAD_and_NADP_cofactor_biosynthesis_global idu(1);Niacin-Choline_transport_and_metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3266","peg","scaffold3|size428649_291213_290122",291213,290122,"-","Toxic anion resistance protein TelA","FIG01241055","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3267","peg","scaffold3|size428649_292842_291229",292842,291229,"-","FIG013452: putative tellurium resistance protein","FIG00756804","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3268","peg","scaffold3|size428649_293699_292926",293699,292926,"-","TerC-like integral membrane protein","FIG01333072","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3269","peg","scaffold3|size428649_294329_293751",294329,293751,"-","Tellurium resistance protein TerD","FIG01248839","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3270","peg","scaffold3|size428649_294945_294364",294945,294364,"-","Tellurium resistance protein TerD","FIG01248839","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3271","peg","scaffold3|size428649_295566_294967",295566,294967,"-","Tellurium resistance protein TerD","FIG01248839","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3272","peg","scaffold3|size428649_295850_296845",295850,296845,"+","FIG01228740: hypothetical protein","FIG01228739","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3273","peg","scaffold3|size428649_297725_296883",297725,296883,"-","Zinc ABC transporter, inner membrane permease protein ZnuB","FIG00005113","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3274","peg","scaffold3|size428649_298378_297683",298378,297683,"-","Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19)","FIG01955932","isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3275","peg","scaffold3|size428649_299392_298433",299392,298433,"-","Zinc ABC transporter, periplasmic-binding protein ZnuA","FIG00021555","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3276","peg","scaffold3|size428649_301265_299580",301265,299580,"-","Oligo-1,6-glucosidase (EC 3.2.1.10)","FIG00086220","icw(1);Maltose_and_Maltodextrin_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3277","peg","scaffold3|size428649_302066_301290",302066,301290,"-","Glucose 1-dehydrogenase (EC 1.1.1.47)","FIG00009828","idu(2);Entner-Doudoroff_Pathway idu(2);D-gluconate_and_ketogluconates_metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3278","peg","scaffold3|size428649_303296_302175",303296,302175,"-","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3279","peg","scaffold3|size428649_303527_303922",303527,303922,"+","L-alanoyl-D-glutamate peptidase","FIG01316270","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3280","peg","scaffold3|size428649_305429_303930",305429,303930,"-","FIG01233332: hypothetical protein","FIG01452931","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3281","peg","scaffold3|size428649_306899_305478",306899,305478,"-","FIG01233900: hypothetical protein","FIG01233899","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3282","peg","scaffold3|size428649_307226_308290",307226,308290,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3283","peg","scaffold3|size428649_309262_308330",309262,308330,"-","oxidoreductase, aldo/keto reductase family","FIG01327425","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3284","peg","scaffold3|size428649_310558_309398",310558,309398,"-","catalyses ATP-dependent electrogenic Na+ extrusion without mechanistically coupled H+ or K+ uptake","FIG01232498","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3285","peg","scaffold3|size428649_311299_310559",311299,310559,"-","catalyses ATP-dependent electrogenic Na+ extrusion without mechanistically coupled H+ or K+ uptake","FIG01232498","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3286","peg","scaffold3|size428649_311443_312144",311443,312144,"+","Autolysis response regulater LytR","FIG00023143","idu(1);Murein_hydrolase_regulation_and_cell_death"]
["scaffold3|size428649","fig|6666666.156949.peg.3287","peg","scaffold3|size428649_312157_313113",312157,313113,"+","FIG01237063: hypothetical protein","FIG01237061","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3288","peg","scaffold3|size428649_314229_313153",314229,313153,"-","FIG01229641: hypothetical protein","FIG01229639","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3289","peg","scaffold3|size428649_314464_314847",314464,314847,"+","YczC","FIG01233013","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3290","peg","scaffold3|size428649_315523_314885",315523,314885,"-","FIG01235705: hypothetical protein","FIG01235702","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3291","peg","scaffold3|size428649_316812_315685",316812,315685,"-","L-asparaginase (EC 3.5.1.1)","FIG00000376","isu;Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3292","peg","scaffold3|size428649_317029_317595",317029,317595,"+","transcriptional regulator, TetR family","FIG00628138","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3293","peg","scaffold3|size428649_317640_319073",317640,319073,"+","drug resistance transporter, EmrB/QacA family","FIG01265370","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3294","peg","scaffold3|size428649_320228_319116",320228,319116,"-","Cysteine desulfurase (EC 2.8.1.7)","FIG00000001","idu(3);tRNA_modification_Bacteria idu(3);CBSS-84588.1.peg.1247 idu(3);Iron-sulfur_cluster_assembly idu(3);CBSS-393130.3.peg.794 idu(3);mnm5U34_biosynthesis_bacteria idu(3);Alanine_biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3295","peg","scaffold3|size428649_320307_320954",320307,320954,"+","Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)","FIG00008873","isu;Omega_peptidases_(EC_3.4.19.-)"]
["scaffold3|size428649","fig|6666666.156949.peg.3296","peg","scaffold3|size428649_321679_320951",321679,320951,"-","Twin-arginine translocation protein TatC","FIG00000335","idu(2);Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related idu(2);Twin-arginine_translocation_system"]
["scaffold3|size428649","fig|6666666.156949.peg.3297","peg","scaffold3|size428649_321952_321740",321952,321740,"-","Twin-arginine translocation protein TatAd","NA","icw(1);Twin-arginine_translocation_system"]
["scaffold3|size428649","fig|6666666.156949.peg.3298","peg","scaffold3|size428649_323717_321966",323717,321966,"-","phosphodiesterase/alkaline phosphatase D","FIG01486777","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3299","peg","scaffold3|size428649_323912_323736",323912,323736,"-","FIG01240469: hypothetical protein","FIG01240467","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3300","peg","scaffold3|size428649_324723_323992",324723,323992,"-","FIG01231132: hypothetical protein","FIG01231130","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3301","peg","scaffold3|size428649_325257_324829",325257,324829,"-","Spore cortex-lytic enzyme CwlJ","FIG00014013","isu;Spore_germination"]
["scaffold3|size428649","fig|6666666.156949.peg.3302","peg","scaffold3|size428649_325486_325340",325486,325340,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3303","peg","scaffold3|size428649_325571_325957",325571,325957,"+","FIG01228700: hypothetical protein","FIG01228698","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3304","peg","scaffold3|size428649_326701_326012",326701,326012,"-","Bacitracin transport permease protein BCRB","FIG01334869","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3305","peg","scaffold3|size428649_327640_326717",327640,326717,"-","bacitracin ABC transporter, ATP-binding protein","FIG01325226","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3306","peg","scaffold3|size428649_328667_327732",328667,327732,"-","sensor histidine kinase","FIG00431356","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3307","peg","scaffold3|size428649_329361_328669",329361,328669,"-","DNA-binding response regulator","FIG01031438","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3308","peg","scaffold3|size428649_330384_329452",330384,329452,"-","Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)","FIG00000709","isu;Biogenesis_of_c-type_cytochromes isu;Periplasmic_disulfide_interchange"]
["scaffold3|size428649","fig|6666666.156949.peg.3309","peg","scaffold3|size428649_330566_330405",330566,330405,"-","inhibitor of TRAP, regulated by T-BOX (trp) sequence RtpA","FIG01346124","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3310","peg","scaffold3|size428649_331889_330969",331889,330969,"-","putative Macrolide 2'-phosphotransferase","FIG01234045","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3311","peg","scaffold3|size428649_332083_332208",332083,332208,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3312","peg","scaffold3|size428649_333698_332166",333698,332166,"-","D-galactarate dehydratase (EC 4.2.1.42)","FIG00002872","isu;D-Galacturonate_and_D-Glucuronate_Utilization icw(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism icw(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo"]
["scaffold3|size428649","fig|6666666.156949.peg.3313","peg","scaffold3|size428649_334491_333790",334491,333790,"-","Predicted 5-dehydro-4-deoxyglucarate regulator YcbG","FIG00079537","isu;D-galactarate,_D-glucarate_and_D-glycerate_catabolism isu;D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo"]
["scaffold3|size428649","fig|6666666.156949.peg.3314","peg","scaffold3|size428649_335928_334561",335928,334561,"-","Glucarate dehydratase (EC 4.2.1.40)","FIG00066504","isu;L-Talarate_Dehydratase icw(3);D-galactarate,_D-glucarate_and_D-glycerate_catabolism icw(3);D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo"]
["scaffold3|size428649","fig|6666666.156949.peg.3315","peg","scaffold3|size428649_337332_335965",337332,335965,"-","D-glucarate permease","NA","icw(2);D-galactarate,_D-glucarate_and_D-glycerate_catabolism icw(2);D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo"]
["scaffold3|size428649","fig|6666666.156949.peg.3316","peg","scaffold3|size428649_338883_337417",338883,337417,"-","Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)","FIG00132790","icw(1);D-Galacturonate_and_D-Glucuronate_Utilization isu;Xylose_utilization isu;L-Arabinose_utilization isu;Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3317","peg","scaffold3|size428649_339839_338913",339839,338913,"-","5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)","FIG00121763","isu;D-Galacturonate_and_D-Glucuronate_Utilization icw(2);D-galactarate,_D-glucarate_and_D-glycerate_catabolism icw(2);D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo"]
["scaffold3|size428649","fig|6666666.156949.peg.3318","peg","scaffold3|size428649_341011_340067",341011,340067,"-","Two-component response regulator, controling glutamine utilization","FIG01327318","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3319","peg","scaffold3|size428649_342374_341022",342374,341022,"-","Two-component sensor histidine kinase, controling glutamine utilization","FIG01321992","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3320","peg","scaffold3|size428649_342556_343539",342556,343539,"+","Glutaminase (EC 3.5.1.2)","FIG00001174","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3321","peg","scaffold3|size428649_343562_344998",343562,344998,"+","Sodium/glutamine symporter glnT","FIG01954320","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3322","peg","scaffold3|size428649_345123_345010",345123,345010,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3323","peg","scaffold3|size428649_345184_346074",345184,346074,"+","Homocysteine S-methyltransferase (EC 2.1.1.10)","NA","isu;S-methylmethionine isu;Methionine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3324","peg","scaffold3|size428649_346260_347606",346260,347606,"+","Arginine permease RocE","FIG00011632","idu(2);Arginine_and_Ornithine_Degradation"]
["scaffold3|size428649","fig|6666666.156949.peg.3325","peg","scaffold3|size428649_348713_347643",348713,347643,"-","Branched-chain amino acid aminotransferase (EC 2.6.1.42)","FIG00050603","idu(1);Isoleucine_degradation idu(1);Branched-Chain_Amino_Acid_Biosynthesis idu(1);Pyruvate_Alanine_Serine_Interconversions idu(1);Alanine_biosynthesis idu(1);Leucine_Degradation_and_HMG-CoA_Metabolism idu(1);Valine_degradation idu(1);Leucine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3326","peg","scaffold3|size428649_349199_348924",349199,348924,"-","unknown","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3327","peg","scaffold3|size428649_349940_349233",349940,349233,"-","Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family","FIG00008348","icw(1);Chitin_and_N-acetylglucosamine_utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3328","peg","scaffold3|size428649_350159_350908",350159,350908,"+","Glucosamine-6-phosphate deaminase (EC 3.5.99.6)","FIG00000645","idu(1);Chitin_and_N-acetylglucosamine_utilization idu(1);Sialic_Acid_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3329","peg","scaffold3|size428649_350929_352824",350929,352824,"+","PTS system, glucose-specific IIC component / PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIA component","FIG01962672","idu(1);Trehalose_Uptake_and_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3330","peg","scaffold3|size428649_352969_354213",352969,354213,"+","Proton/glutamate symport protein @ Proton/aspartate symport protein","FIG00966705","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3331","peg","scaffold3|size428649_355217_354249",355217,354249,"-","Rhodanese domain protein UPF0176, Firmicutes subgroup","FIG00009035","isu;Single-Rhodanese-domain_proteins"]
["scaffold3|size428649","fig|6666666.156949.peg.3332","peg","scaffold3|size428649_355294_355413",355294,355413,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3333","peg","scaffold3|size428649_356806_355466",356806,355466,"-","Erythromycin esterase","FIG01374811","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3334","peg","scaffold3|size428649_357189_356911",357189,356911,"-","FIG01225691: hypothetical protein","FIG01225690","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3335","peg","scaffold3|size428649_358035_357244",358035,357244,"-","Phosphatidylserine decarboxylase (EC 4.1.1.65)","FIG00001264","icw(1);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold3|size428649","fig|6666666.156949.peg.3336","peg","scaffold3|size428649_358516_358028",358516,358028,"-","Alkaline phosphatase like protein","FIG00006211","idu(1);Phosphate_metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3337","peg","scaffold3|size428649_359022_358507",359022,358507,"-","CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)","FIG00000775","isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold3|size428649","fig|6666666.156949.peg.3338","peg","scaffold3|size428649_360126_359236",360126,359236,"-","FIG01244449: hypothetical protein","FIG01590035","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3339","peg","scaffold3|size428649_360695_360297",360695,360297,"-","YbfJ","FIG01232144","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3340","peg","scaffold3|size428649_361599_360658",361599,360658,"-","Glutamyl endopeptidase precursor (EC 3.4.21.19), blaSE","FIG00019562","isu;Serine_endopeptidase_(EC_3.4.21.-)"]
["scaffold3|size428649","fig|6666666.156949.peg.3341","peg","scaffold3|size428649_362897_361743",362897,361743,"-","Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)","FIG00000909","isu;De_Novo_Purine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3342","peg","scaffold3|size428649_363270_365312",363270,365312,"+","Putative toxin component near putative ESAT-related proteins, repetitive / Repetitive hypothetical protein near ESAT cluster, SA0282 homolog","FIG00149320","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3343","peg","scaffold3|size428649_365325_366350",365325,366350,"+","ADP-ribosylglycohydrolase","FIG01370949","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3344","peg","scaffold3|size428649_366502_367329",366502,367329,"+","AraC-family transcriptional regulator","FIG01346906","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3345","peg","scaffold3|size428649_367326_368246",367326,368246,"+","Permease of the drug/metabolite transporter (DMT) superfamily","FIG00846773","idu(11);Queuosine-Archaeosine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3346","peg","scaffold3|size428649_368321_370510",368321,370510,"+","FIG01249079: hypothetical protein","FIG01397145","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3347","peg","scaffold3|size428649_370585_371010",370585,371010,"+","FIG01237641: hypothetical protein","FIG01445828","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3348","peg","scaffold3|size428649_372313_371045",372313,371045,"-","transporter, putative","FIG01225794","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3349","peg","scaffold3|size428649_373209_372292",373209,372292,"-","Transcriptional regulator, MarR family / Acetyltransferase (GNAT)","FIG00738693","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3350","peg","scaffold3|size428649_373549_373301",373549,373301,"-","YbeF","FIG01235460","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3351","peg","scaffold3|size428649_373846_375180",373846,375180,"+","Glycerol-3-phosphate transporter","FIG00052943","icw(1);Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3352","peg","scaffold3|size428649_375279_376160",375279,376160,"+","Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)","FIG00002245","isu;Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3353","peg","scaffold3|size428649_377826_376207",377826,376207,"-","Amino acid transporter","FIG00745843","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3354","peg","scaffold3|size428649_378094_378354",378094,378354,"+","YbyB","FIG01232783","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3355","peg","scaffold3|size428649_379648_378395",379648,378395,"-","Cytochrome P450 152A1 (EC 1.14.-.-)","FIG01230374","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3356","peg","scaffold3|size428649_379821_380624",379821,380624,"+","Probable beta-lactamase ybxI precursor (EC 3.5.2.6)","FIG00133779","isu;Beta-lactamase"]
["scaffold3|size428649","fig|6666666.156949.peg.3357","peg","scaffold3|size428649_380842_380651",380842,380651,"-","unknown","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3358","peg","scaffold3|size428649_381107_380859",381107,380859,"-","sporulation-specific SASP protein","FIG01241859","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3359","peg","scaffold3|size428649_382607_381219",382607,381219,"-","amino acid permease family protein","FIG01308903","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3360","peg","scaffold3|size428649_384109_382925",384109,382925,"-","conserved hypothetical protein YbdO","FIG01230172","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3361","peg","scaffold3|size428649_384241_385098",384241,385098,"+","FIG01245778: hypothetical protein","FIG01245777","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3362","peg","scaffold3|size428649_385184_385954",385184,385954,"+","serine/threonine protein kinase","FIG00723707","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3363","peg","scaffold3|size428649_386142_385939",386142,385939,"-","FIG01239827: hypothetical protein","FIG01239826","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3364","peg","scaffold3|size428649_386466_386341",386466,386341,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3365","peg","scaffold3|size428649_388063_386891",388063,386891,"-","major facilitator (MFS) superfamily protein","FIG01363141","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3366","peg","scaffold3|size428649_388227_388078",388227,388078,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3367","peg","scaffold3|size428649_388492_388190",388492,388190,"-","Transcriptional regulator, ArsR family","FIG00003845","idu(4);CBSS-1085.1.peg.1363"]
["scaffold3|size428649","fig|6666666.156949.peg.3368","peg","scaffold3|size428649_388569_388724",388569,388724,"+","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3369","peg","scaffold3|size428649_389350_388976",389350,388976,"-","FIG01108316: hypothetical protein","FIG01108315","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3370","peg","scaffold3|size428649_389698_389408",389698,389408,"-","Uncharacterized protein ybcH","FIG01229585","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3371","peg","scaffold3|size428649_390289_389762",390289,389762,"-","Carbonic anhydrase (EC 4.2.1.1)","FIG00023019","idu(2);Zinc_regulated_enzymes"]
["scaffold3|size428649","fig|6666666.156949.peg.3372","peg","scaffold3|size428649_392981_390366",392981,390366,"-","Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase chain 5 homolog","FIG00001964","isu;CO2_uptake,_carboxysome"]
["scaffold3|size428649","fig|6666666.156949.peg.3373","peg","scaffold3|size428649_394513_392996",394513,392996,"-","NADH dehydrogenase, subunit 5","FIG01965206","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3374","peg","scaffold3|size428649_395574_395032",395574,395032,"-","Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)","FIG00000328","icw(1);DNA_repair,_bacterial idu(1);CBSS-393124.3.peg.2657"]
["scaffold3|size428649","fig|6666666.156949.peg.3375","peg","scaffold3|size428649_396196_395558",396196,395558,"-","ADA regulatory protein","FIG00006424","isu;DNA_repair,_bacterial icw(1);CBSS-393124.3.peg.2657"]
["scaffold3|size428649","fig|6666666.156949.peg.3376","peg","scaffold3|size428649_396469_397380",396469,397380,"+","DNA-3-methyladenine glycosylase II (EC 3.2.2.21)","FIG00001134","idu(2);DNA_Repair_Base_Excision"]
["scaffold3|size428649","fig|6666666.156949.peg.3377","peg","scaffold3|size428649_399635_397833",399635,397833,"-","Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)","FIG00000038","isu;UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis isu;Sialic_Acid_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3378","peg","scaffold3|size428649_399841_399710",399841,399710,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3379","peg","scaffold3|size428649_401415_400069",401415,400069,"-","Phosphoglucosamine mutase (EC 5.4.2.10)","FIG00009682","icw(2);Bacterial_checkpoint-control-related_cluster icw(1);UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis icw(1);Sialic_Acid_Metabolism"]
["scaffold3|size428649","fig|6666666.156949.peg.3380","peg","scaffold3|size428649_402888_401434",402888,401434,"-","Uncharacterized secreted protein associated with spyDAC","FIG00137498","icw(1);Bacterial_checkpoint-control-related_cluster"]
["scaffold3|size428649","fig|6666666.156949.peg.3381","peg","scaffold3|size428649_403702_402881",403702,402881,"-","Diadenylate cyclase spyDAC; Bacterial checkpoint controller DisA with nucleotide-binding domain","FIG00006310","idu(1);Bacterial_checkpoint-control-related_cluster icw(2);Bacterial_checkpoint-control-related_cluster"]
["scaffold3|size428649","fig|6666666.156949.peg.3382","peg","scaffold3|size428649_404489_403863",404489,403863,"-","FIG01231938: hypothetical protein","FIG01231934","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3383","peg","scaffold3|size428649_405066_404503",405066,404503,"-","RNA polymerase sigma factor SigW","FIG00102688","isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold3|size428649","fig|6666666.156949.rna.65","rna","scaffold3|size428649_405368_405297",405368,405297,"-","tRNA-Gln-TTG","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.66","rna","scaffold3|size428649_405457_405376",405457,405376,"-","tRNA-Tyr-GTA","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.67","rna","scaffold3|size428649_405552_405480",405552,405480,"-","tRNA-Thr-TGT","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.68","rna","scaffold3|size428649_405632_405560",405632,405560,"-","tRNA-Val-TAC","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.69","rna","scaffold3|size428649_405710_405639",405710,405639,"-","tRNA-Glu-TTC","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3384","peg","scaffold3|size428649_405890_406345",405890,406345,"+","Purine nucleoside phosphorylase (EC 2.4.2.1)","FIG00000659","idu(2);Purine_conversions idu(2);Adenosyl_nucleosidases idu(2);Deoxyribose_and_Deoxynucleoside_Catabolism idu(2);pyrimidine_conversions"]
["scaffold3|size428649","fig|6666666.156949.peg.3385","peg","scaffold3|size428649_406358_406840",406358,406840,"+","GCN5-related N-acetyltransferase","FIG01272034","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3386","peg","scaffold3|size428649_406950_407864",406950,407864,"+","N-acetylmuramic acid 6-phosphate etherase","FIG00001103","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3387","peg","scaffold3|size428649_407881_408732",407881,408732,"+","RpiR family transcriptional regulator YbbH, clustered with N-acetylmuramic acid utilization","FIG01962614","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3388","peg","scaffold3|size428649_408758_409906,scaffold3|size428649_409906_410097",408758,410097,"+","PTS system, sucrose-specific IIB component (EC 2.7.1.69) / PTS system, sucrose-specific IIC component (EC 2.7.1.69) / PTS system, sucrose-specific IIA component (EC 2.7.1.69)","FIG00005650","idu(2);Sucrose_utilization isu;Sucrose_utilization isu;Sucrose_utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3389","peg","scaffold3|size428649_410182_411507",410182,411507,"+","Beta-lactamase class C and other penicillin binding proteins","FIG00000681","isu;Beta-lactamase"]
["scaffold3|size428649","fig|6666666.156949.peg.3390","peg","scaffold3|size428649_411535_413463",411535,413463,"+","Beta-hexosaminidase (EC 3.2.1.52)","FIG00001088","isu;Chitin_and_N-acetylglucosamine_utilization isu;N-Acetyl-Galactosamine_and_Galactosamine_Utilization"]
["scaffold3|size428649","fig|6666666.156949.peg.3391","peg","scaffold3|size428649_413477_414721",413477,414721,"+","alternate gene name: yzbB","FIG00001850","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3392","peg","scaffold3|size428649_414912_416501",414912,416501,"+","DNA-binding response regulator, AraC family","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3393","peg","scaffold3|size428649_416592_417545",416592,417545,"+","Fe-bacillibactin uptake system FeuA, Fe-bacillibactin binding","FIG00148755","icw(1);Bacillibactin_Siderophore"]
["scaffold3|size428649","fig|6666666.156949.peg.3394","peg","scaffold3|size428649_417564_418568",417564,418568,"+","Fe-bacillibactin uptake system FeuB","FIG01304368","isu;Bacillibactin_Siderophore"]
["scaffold3|size428649","fig|6666666.156949.peg.3395","peg","scaffold3|size428649_418561_419493,scaffold3|size428649_419495_419746",418561,419746,"+","Fe-bacillibactin uptake system FeuC","FIG00139182","isu;Bacillibactin_Siderophore"]
["scaffold3|size428649","fig|6666666.156949.peg.3396","peg","scaffold3|size428649_421288_420329",421288,420329,"-","Bile acid sodium symporter","FIG01311968","NA"]
["scaffold3|size428649","fig|6666666.156949.peg.3397","peg","scaffold3|size428649_422831_421395",422831,421395,"-","Sulfate permease","FIG00005216","idu(1);Cysteine_Biosynthesis"]
["scaffold3|size428649","fig|6666666.156949.peg.3398","peg","scaffold3|size428649_423272_423009",423272,423009,"-","hypothetical protein","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.70","rna","scaffold3|size428649_423507_423392",423507,423392,"-","5S RNA","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.71","rna","scaffold3|size428649_426599_423563",426599,423563,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.72","rna","scaffold3|size428649_426755_423827",426755,423827,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold3|size428649","fig|6666666.156949.rna.73","rna","scaffold3|size428649_428649_426923",428649,426923,"-","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold403|size540","fig|6666666.156949.peg.3399","peg","scaffold403|size540_6_272",6,272,"+","Transcriptional regulator, LuxR family","FIG00450061","NA"]
["scaffold403|size540","fig|6666666.156949.peg.3400","peg","scaffold403|size540_426_280",426,280,"-","hypothetical protein","NA","NA"]
["scaffold413|size535","fig|6666666.156949.peg.3401","peg","scaffold413|size535_468_340",468,340,"-","hypothetical protein","NA","NA"]
["scaffold415|size533","fig|6666666.156949.peg.3402","peg","scaffold415|size533_379_149",379,149,"-","UDP-galactopyranose mutase (EC 5.4.99.9)","NA","NA"]
["scaffold417|size531","fig|6666666.156949.peg.3403","peg","scaffold417|size531_167_298",167,298,"+","hypothetical protein","NA","NA"]
["scaffold419|size530","fig|6666666.156949.rna.74","rna","scaffold419|size530_530_1",530,1,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold425|size528","fig|6666666.156949.peg.3404","peg","scaffold425|size528_5_301",5,301,"+","hypothetical protein","NA","NA"]
["scaffold428|size527","fig|6666666.156949.peg.3405","peg","scaffold428|size527_292_20",292,20,"-","hypothetical protein","NA","NA"]
["scaffold438|size523","fig|6666666.156949.peg.3406","peg","scaffold438|size523_406_284",406,284,"-","Undecaprenyl-diphosphatase (EC 3.6.1.27)","FIG00000555","NA"]
["scaffold440|size523","fig|6666666.156949.peg.3407","peg","scaffold440|size523_48_362",48,362,"+","Transcriptional regulator, MarR family","NA","NA"]
["scaffold442|size522","fig|6666666.156949.peg.3408","peg","scaffold442|size522_5_334",5,334,"+","TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA","FIG00134348","idu(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);YgjD_and_YeaZ idu(1);Macromolecular_synthesis_operon idu(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold444|size522","fig|6666666.156949.peg.3409","peg","scaffold444|size522_55_216",55,216,"+","hypothetical protein","NA","NA"]
["scaffold449|size520","fig|6666666.156949.peg.3410","peg","scaffold449|size520_9_242",9,242,"+","hypothetical protein","NA","NA"]
["scaffold44|size1301","fig|6666666.156949.peg.3411","peg","scaffold44|size1301_231_707",231,707,"+","hypothetical protein","NA","NA"]
["scaffold450|size520","fig|6666666.156949.peg.3412","peg","scaffold450|size520_391_272",391,272,"-","hypothetical protein","NA","NA"]
["scaffold453|size519","fig|6666666.156949.peg.3413","peg","scaffold453|size519_301_116",301,116,"-","hypothetical protein","NA","NA"]
["scaffold454|size518","fig|6666666.156949.peg.3414","peg","scaffold454|size518_440_255",440,255,"-","Dephospho-CoA kinase (EC 2.7.1.24)","NA","idu(1);Coenzyme_A_Biosynthesis"]
["scaffold461|size518","fig|6666666.156949.peg.3415","peg","scaffold461|size518_460_158",460,158,"-","Integral membrane protein","NA","NA"]
["scaffold464|size517","fig|6666666.156949.peg.3416","peg","scaffold464|size517_502_302",502,302,"-","Twin-arginine translocation protein TatC","FIG00000335","idu(2);Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related idu(2);Twin-arginine_translocation_system"]
["scaffold465|size516","fig|6666666.156949.peg.3417","peg","scaffold465|size516_274_71",274,71,"-","DNA recombination and repair protein RecF","FIG00000412","idu(1);Cell_Division_Subsystem_including_YidCD idu(1);DNA_repair,_bacterial_RecFOR_pathway idu(1);DNA_replication_cluster_1 idu(1);Hypothetical_Coupled_to_RecF"]
["scaffold466|size516","fig|6666666.156949.peg.3418","peg","scaffold466|size516_27_140",27,140,"+","hypothetical protein","NA","NA"]
["scaffold469|size515","fig|6666666.156949.peg.3419","peg","scaffold469|size515_94_477",94,477,"+","Malto-oligosyltrehalose synthase (EC 5.4.99.15)","FIG00001606","isu;Trehalose_Biosynthesis isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold46|size1221","fig|6666666.156949.peg.3420","peg","scaffold46|size1221_23_256",23,256,"+","hypothetical protein","NA","NA"]
["scaffold46|size1221","fig|6666666.156949.peg.3421","peg","scaffold46|size1221_382_263",382,263,"-","hypothetical protein","NA","NA"]
["scaffold46|size1221","fig|6666666.156949.peg.3422","peg","scaffold46|size1221_835_951",835,951,"+","hypothetical protein","NA","NA"]
["scaffold472|size515","fig|6666666.156949.peg.3423","peg","scaffold472|size515_196_47",196,47,"-","hypothetical protein","NA","NA"]
["scaffold475|size514","fig|6666666.156949.peg.3424","peg","scaffold475|size514_16_453",16,453,"+","hypothetical protein","NA","NA"]
["scaffold488|size510","fig|6666666.156949.peg.3425","peg","scaffold488|size510_285_70",285,70,"-","tRNA dihydrouridine synthase A","FIG00444746","NA"]
["scaffold490|size510","fig|6666666.156949.peg.3426","peg","scaffold490|size510_498_28",498,28,"-","Adenosine deaminase (EC 3.5.4.4)","FIG00000687","isu;Purine_conversions"]
["scaffold491|size509","fig|6666666.156949.peg.3427","peg","scaffold491|size509_62_232",62,232,"+","hypothetical protein","NA","NA"]
["scaffold492|size509","fig|6666666.156949.peg.3428","peg","scaffold492|size509_382_206",382,206,"-","hypothetical protein","NA","NA"]
["scaffold49|size1183","fig|6666666.156949.peg.3429","peg","scaffold49|size1183_945_832",945,832,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3430","peg","scaffold4|size376322_1456_785",1456,785,"-","5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)","NA","isu;Adenosyl_nucleosidases isu;Adenosyl_nucleosidases isu;Methionine_Degradation isu;CBSS-320388.3.peg.3759 isu;CBSS-320388.3.peg.3759 isu;Polyamine_Metabolism isu;Methionine_Salvage icw(1);Methionine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3431","peg","scaffold4|size376322_2142_1501",2142,1501,"-","SAM-dependent methlytransferase YrrT","FIG00007567","isu;Methionine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3432","peg","scaffold4|size376322_2335_2538",2335,2538,"+","FIG01225496: hypothetical protein","FIG01225495","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3433","peg","scaffold4|size376322_3273_2575",3273,2575,"-","Hypothetical protein perhaps functionally coupled to transcription elongation factor GreA","FIG01312561","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3434","peg","scaffold4|size376322_5092_3338",5092,3338,"-","Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)","FIG00046929","idu(3);Bacterial_Cell_Division idu(3);CBSS-83331.1.peg.3039 idu(3);Flagellum_in_Campylobacter idu(3);Bacterial_Cytoskeleton idu(3);Peptidoglycan_Biosynthesis idu(3);16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold4|size376322","fig|6666666.156949.peg.3435","peg","scaffold4|size376322_5619_5146",5619,5146,"-","Transcription elongation factor GreA","FIG00000288","isu;Transcription_factors_bacterial"]
["scaffold4|size376322","fig|6666666.156949.peg.3436","peg","scaffold4|size376322_6505_5870",6505,5870,"-","Uridine kinase (EC 2.7.1.48) [C1]","FIG00001755","isu;pyrimidine_conversions"]
["scaffold4|size376322","fig|6666666.156949.peg.3437","peg","scaffold4|size376322_7780_6512",7780,6512,"-","peptidase, U32 family large subunit [C1]","FIG00645140","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3438","peg","scaffold4|size376322_8728_7799",8728,7799,"-","peptidase, U32 family small subunit [C1]","FIG01317417","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3439","peg","scaffold4|size376322_9387_8734",9387,8734,"-","FIG011945: O-methyltransferase family protein","FIG00628806","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3440","peg","scaffold4|size376322_10621_9539",10621,9539,"-","FIG004453: protein YceG like","FIG00004453","isu;Cluster_containing_Alanyl-tRNA_synthetase isu;tRNA_modification_Bacteria isu;CBSS-323097.3.peg.2594"]
["scaffold4|size376322","fig|6666666.156949.peg.3441","peg","scaffold4|size376322_11033_10752",11033,10752,"-","Ortholog of S. aureus MRSA252 (BX571856) SAR1694","FIG00002555","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3442","peg","scaffold4|size376322_11467_11051",11467,11051,"-","Putative Holliday junction resolvase YggF","FIG00912840","icw(1);Cluster_containing_Alanyl-tRNA_synthetase isu;Cluster_containing_Glutathione_synthetase"]
["scaffold4|size376322","fig|6666666.156949.peg.3443","peg","scaffold4|size376322_11741_11475",11741,11475,"-","FIG01055109: hypothetical protein","FIG00001565","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3444","peg","scaffold4|size376322_14462_11826",14462,11826,"-","Alanyl-tRNA synthetase (EC 6.1.1.7)","FIG00000139","icw(2);Cluster_containing_Alanyl-tRNA_synthetase isu;tRNA_aminoacylation,_Ala"]
["scaffold4|size376322","fig|6666666.156949.peg.3445","peg","scaffold4|size376322_15855_14794",15855,14794,"-","UPF0118 membrane protein YrrI","FIG00009731","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3446","peg","scaffold4|size376322_16012_16740",16012,16740,"+","Glutamate transport ATP-binding protein","FIG01114305","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3447","peg","scaffold4|size376322_16761_17582",16761,17582,"+","Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)","FIG00510038","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3448","peg","scaffold4|size376322_17643_18293",17643,18293,"+","Glutamate transport membrane-spanning protein","FIG00050908","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3449","peg","scaffold4|size376322_18310_18966",18310,18966,"+","Glutamate transport membrane-spanning protein","FIG00050908","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3450","peg","scaffold4|size376322_19132_19001",19132,19001,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3451","peg","scaffold4|size376322_19345_19154",19345,19154,"-","BH1265 unknown","FIG01312341","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3452","peg","scaffold4|size376322_19821_19357",19821,19357,"-","BH1264 unknown conserved protein in B. subtilis","FIG01232682","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3453","peg","scaffold4|size376322_22333_19937",22333,19937,"-","RecD-like DNA helicase YrrC","FIG00059211","isu;DNA_repair,_bacterial_RecBCD_pathway"]
["scaffold4|size376322","fig|6666666.156949.peg.3454","peg","scaffold4|size376322_23008_22358",23008,22358,"-","Tetratricopeptide repeat (TPR) family protein","FIG00774052","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3455","peg","scaffold4|size376322_24179_23064",24179,23064,"-","tRNA-specific 2-thiouridylase MnmA","FIG00000626","isu;RNA_methylation"]
["scaffold4|size376322","fig|6666666.156949.peg.3456","peg","scaffold4|size376322_25349_24210",25349,24210,"-","Cysteine desulfurase (EC 2.8.1.7)","FIG00000001","idu(3);tRNA_modification_Bacteria idu(3);CBSS-84588.1.peg.1247 icw(1);Iron-sulfur_cluster_assembly idu(3);CBSS-393130.3.peg.794 idu(3);mnm5U34_biosynthesis_bacteria idu(3);Alanine_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3457","peg","scaffold4|size376322_25787_25368",25787,25368,"-","Iron-sulfur cluster regulator IscR","FIG00000621","isu;Rrf2_family_transcriptional_regulators isu;Iron-sulfur_cluster_assembly icw(1);Alanine_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3458","peg","scaffold4|size376322_25987_27252",25987,27252,"+","Uncharacterized ATPase (AAA family) associated with cysteine desulfurase","FIG00153566","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3459","peg","scaffold4|size376322_28056_27292",28056,27292,"-","CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway","FIG00431220","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3460","peg","scaffold4|size376322_28298_28086",28298,28086,"-","FIG01242636: hypothetical protein","FIG01242635","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3461","peg","scaffold4|size376322_30169_28391",30169,28391,"-","Aspartyl-tRNA synthetase (EC 6.1.1.12)","FIG00000750","isu;tRNA_aminoacylation,_Asp_and_Asn"]
["scaffold4|size376322","fig|6666666.156949.peg.3462","peg","scaffold4|size376322_31457_30183",31457,30183,"-","Histidyl-tRNA synthetase (EC 6.1.1.21)","FIG00000087","isu;tRNA_aminoacylation,_His"]
["scaffold4|size376322","fig|6666666.156949.peg.3463","peg","scaffold4|size376322_32009_31839",32009,31839,"-","YrzK","FIG01229019","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3464","peg","scaffold4|size376322_32013_33698",32013,33698,"+","N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)","FIG00001385","idu(3);Murein_Hydrolases idu(3);Zinc_regulated_enzymes idu(3);Recycling_of_Peptidoglycan_Amino_Acids"]
["scaffold4|size376322","fig|6666666.156949.peg.3465","peg","scaffold4|size376322_34165_33725",34165,33725,"-","D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1)","FIG00000473","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3466","peg","scaffold4|size376322_36382_34178",36382,34178,"-","GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I","FIG00005237","isu;Stringent_Response,_(p)ppGpp_metabolism isu;CBSS-176299.4.peg.1292"]
["scaffold4|size376322","fig|6666666.156949.peg.3467","peg","scaffold4|size376322_37062_36550",37062,36550,"-","Adenine phosphoribosyltransferase (EC 2.4.2.7)","FIG00000277","isu;Purine_conversions isu;cAMP_signaling_in_bacteria"]
["scaffold4|size376322","fig|6666666.156949.peg.3468","peg","scaffold4|size376322_39428_37068",39428,37068,"-","Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)","FIG00060517","isu;DNA_Repair_Base_Excision isu;DNA-replication isu;DNA_repair,_bacterial_RecFOR_pathway"]
["scaffold4|size376322","fig|6666666.156949.peg.3469","peg","scaffold4|size376322_39818_39495",39818,39495,"-","unknown","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3470","peg","scaffold4|size376322_40391_39894",40391,39894,"-","trkA domain protein","FIG01230583","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3471","peg","scaffold4|size376322_42762_40549",42762,40549,"-","Protein-export membrane protein SecD (TC 3.A.5.1.1) / Protein-export membrane protein SecF (TC 3.A.5.1.1)","FIG00229272","icw(1);CBSS-211586.1.peg.2832 icw(1);CBSS-211586.1.peg.2832"]
["scaffold4|size376322","fig|6666666.156949.peg.3472","peg","scaffold4|size376322_43097_42801",43097,42801,"-","FIG01227478: hypothetical protein","FIG01227477","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3473","peg","scaffold4|size376322_43213_44769",43213,44769,"+","Stage V sporulation protein B","FIG00002090","idu(2);Sporulation_gene_orphans"]
["scaffold4|size376322","fig|6666666.156949.peg.3474","peg","scaffold4|size376322_45429_44773",45429,44773,"-","Ortholog yrbG, yetE, ykjA, ydfS, ydfR B.subtilis","FIG01225222","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3475","peg","scaffold4|size376322_45628_45515",45628,45515,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3476","peg","scaffold4|size376322_45627_46016",45627,46016,"+","FIG01228422: hypothetical protein","FIG01228421","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3477","peg","scaffold4|size376322_46342_46073",46342,46073,"-","Preprotein translocase subunit YajC (TC 3.A.5.1.1)","FIG00051656","isu;CBSS-211586.1.peg.2832"]
["scaffold4|size376322","fig|6666666.156949.peg.3478","peg","scaffold4|size376322_47521_46376",47521,46376,"-","tRNA-guanine transglycosylase (EC 2.4.2.29)","FIG00000274","icw(1);tRNA_modification_Bacteria icw(2);CBSS-211586.1.peg.2832 icw(1);Scaffold_proteins_for_[4Fe-4S]_cluster_assembly_(MRP_family) icw(1);Queuosine-Archaeosine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3479","peg","scaffold4|size376322_48576_47548",48576,47548,"-","S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)","FIG00000334","isu;tRNA_modification_Bacteria icw(1);CBSS-211586.1.peg.2832 isu;Scaffold_proteins_for_[4Fe-4S]_cluster_assembly_(MRP_family) isu;Queuosine-Archaeosine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3480","peg","scaffold4|size376322_48806_48606",48806,48606,"-","FIG01226768: hypothetical protein","FIG01226767","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3481","peg","scaffold4|size376322_49803_48799",49803,48799,"-","Holliday junction DNA helicase RuvB","FIG00000352","icw(1);DNA-replication"]
["scaffold4|size376322","fig|6666666.156949.peg.3482","peg","scaffold4|size376322_50419_49814",50419,49814,"-","Holliday junction DNA helicase RuvA","FIG00000314","isu;DNA-replication"]
["scaffold4|size376322","fig|6666666.156949.peg.3483","peg","scaffold4|size376322_51070_50558",51070,50558,"-","bypass-of-forespore protein C, putative","FIG01227565","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3484","peg","scaffold4|size376322_52425_51118",52425,51118,"-","alpha-ketoglutarate permease","FIG01378565","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3485","peg","scaffold4|size376322_53521_52496",53521,52496,"-","Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)","FIG00043259","idu(2);Inositol_catabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3486","peg","scaffold4|size376322_53759_54406",53759,54406,"+","FIG01233475: hypothetical protein","FIG01233474","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3487","peg","scaffold4|size376322_54574_54452",54574,54452,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3488","peg","scaffold4|size376322_54736_55104",54736,55104,"+","Uncharacterized protein yrzH","FIG01236182","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3489","peg","scaffold4|size376322_55111_55251",55111,55251,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3490","peg","scaffold4|size376322_55415_56869",55415,56869,"+","sodium/alanine symporter family protein","FIG01316725","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3491","peg","scaffold4|size376322_57665_56910",57665,56910,"-","FIG000859: hypothetical protein","FIG01961973","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3492","peg","scaffold4|size376322_58331_57735",58331,57735,"-","Sporulation cortex protein coxA","FIG01450659","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3493","peg","scaffold4|size376322_59642_58479",59642,58479,"-","Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)","NA","idu(1);Putrescine_utilization_pathways"]
["scaffold4|size376322","fig|6666666.156949.peg.3494","peg","scaffold4|size376322_60865_59759",60865,59759,"-","Quinolinate synthetase (EC 2.5.1.72)","FIG00000463","isu;Mycobacterium_virulence_operon_possibly_involved_in_quinolinate_biosynthesis isu;NAD_and_NADP_cofactor_biosynthesis_global"]
["scaffold4|size376322","fig|6666666.156949.peg.3495","peg","scaffold4|size376322_61721_60852",61721,60852,"-","Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)","FIG00000413","icw(1);Mycobacterium_virulence_operon_possibly_involved_in_quinolinate_biosynthesis icw(1);NAD_and_NADP_cofactor_biosynthesis_global"]
["scaffold4|size376322","fig|6666666.156949.peg.3496","peg","scaffold4|size376322_63270_61675",63270,61675,"-","L-aspartate oxidase (EC 1.4.3.16)","FIG00000575","icw(2);Mycobacterium_virulence_operon_possibly_involved_in_quinolinate_biosynthesis icw(3);NAD_and_NADP_cofactor_biosynthesis_global"]
["scaffold4|size376322","fig|6666666.156949.peg.3497","peg","scaffold4|size376322_63358_64560",63358,64560,"+","Cysteine desulfurase (EC 2.8.1.7)","FIG00000001","idu(3);tRNA_modification_Bacteria idu(3);CBSS-84588.1.peg.1247 idu(3);Iron-sulfur_cluster_assembly idu(3);CBSS-393130.3.peg.794 idu(3);mnm5U34_biosynthesis_bacteria idu(3);Alanine_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3498","peg","scaffold4|size376322_64520_65062",64520,65062,"+","Transcriptional repressor for NAD biosynthesis in gram-positives","FIG00005479","icw(2);NAD_and_NADP_cofactor_biosynthesis_global"]
["scaffold4|size376322","fig|6666666.156949.peg.3499","peg","scaffold4|size376322_65943_65086",65943,65086,"-","Prephenate dehydratase (EC 4.2.1.51)","FIG00341289","isu;Chorismate_Synthesis isu;Phenylalanine_and_Tyrosine_Branches_from_Chorismate"]
["scaffold4|size376322","fig|6666666.156949.peg.3500","peg","scaffold4|size376322_66403_65960",66403,65960,"-","ACT domain-containing protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3501","peg","scaffold4|size376322_67750_66464",67750,66464,"-","GTP-binding protein Obg","FIG00000169","isu;Universal_GTPases icw(3);CBSS-176279.3.peg.868"]
["scaffold4|size376322","fig|6666666.156949.peg.3502","peg","scaffold4|size376322_68362_67784",68362,67784,"-","Sporulation initiation phosphotransferase B (Spo0B)","FIG00012060","icw(2);Sporulation_gene_orphans"]
["scaffold4|size376322","fig|6666666.156949.peg.3503","peg","scaffold4|size376322_68440_68562",68440,68562,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3504","peg","scaffold4|size376322_68967_68683",68967,68683,"-","LSU ribosomal protein L27p","FIG00000189","icw(1);Ribosome_LSU_bacterial icw(1);CBSS-176279.3.peg.868"]
["scaffold4|size376322","fig|6666666.156949.peg.3505","peg","scaffold4|size376322_69318_68980",69318,68980,"-","FIG139598: Potential ribosomal protein","FIG00007256","icw(2);CBSS-176279.3.peg.868"]
["scaffold4|size376322","fig|6666666.156949.peg.3506","peg","scaffold4|size376322_69629_69321",69629,69321,"-","LSU ribosomal protein L21p","FIG00000276","isu;Ribosome_LSU_bacterial isu;CBSS-176279.3.peg.868"]
["scaffold4|size376322","fig|6666666.156949.peg.3507","peg","scaffold4|size376322_70642_69776",70642,69776,"-","Stage IV sporulation pro-sigma-K processing enzyme (SpoIVFB)","FIG00012388","icw(1);Sporulation_gene_orphans"]
["scaffold4|size376322","fig|6666666.156949.peg.3508","peg","scaffold4|size376322_71429_70635",71429,70635,"-","Stage IV sporulation protein FA (SpoIVFA)","FIG00012124","isu;Sporulation_gene_orphans"]
["scaffold4|size376322","fig|6666666.156949.peg.3509","peg","scaffold4|size376322_72383_71577",72383,71577,"-","Septum site-determining protein MinD","FIG00000519","icw(1);Septum_site-determining_cluster_Min icw(3);Bacterial_Cell_Division icw(3);Bacterial_Cytoskeleton icw(5);Bacterial_cell_division_cluster"]
["scaffold4|size376322","fig|6666666.156949.peg.3510","peg","scaffold4|size376322_73065_72385",73065,72385,"-","Septum site-determining protein MinC","FIG00008886","isu;Septum_site-determining_cluster_Min isu;Bacterial_Cell_Division isu;Bacterial_Cytoskeleton icw(1);Bacterial_cell_division_cluster"]
["scaffold4|size376322","fig|6666666.156949.peg.3511","peg","scaffold4|size376322_73636_73118",73636,73118,"-","Rod shape-determining protein MreD","FIG00001024","icw(1);Bacterial_Cell_Division icw(1);Bacterial_Cytoskeleton icw(6);Bacterial_cell_division_cluster icw(2);CBSS-354.1.peg.2917"]
["scaffold4|size376322","fig|6666666.156949.peg.3512","peg","scaffold4|size376322_74505_73633",74505,73633,"-","Rod shape-determining protein MreC","FIG00000460","icw(5);Bacterial_Cell_Division icw(5);Bacterial_Cytoskeleton icw(2);Bacterial_cell_division_cluster isu;CBSS-354.1.peg.2917"]
["scaffold4|size376322","fig|6666666.156949.peg.3513","peg","scaffold4|size376322_75549_74536",75549,74536,"-","Rod shape-determining protein MreB","FIG00065314","icw(4);Bacterial_Cell_Division icw(4);Bacterial_Cytoskeleton isu;Bacterial_cell_division_cluster"]
["scaffold4|size376322","fig|6666666.156949.peg.3514","peg","scaffold4|size376322_76336_75641",76336,75641,"-","DNA repair protein RadC","FIG00037431","isu;DNA_repair,_bacterial icw(4);Bacterial_cell_division_cluster"]
["scaffold4|size376322","fig|6666666.156949.peg.3515","peg","scaffold4|size376322_76942_76373",76942,76373,"-","Septum formation protein Maf","FIG00021845","icw(2);Bacterial_Cell_Division icw(2);Bacterial_Cytoskeleton icw(3);Bacterial_cell_division_cluster icw(1);CBSS-354.1.peg.2917"]
["scaffold4|size376322","fig|6666666.156949.peg.3516","peg","scaffold4|size376322_78093_77095",78093,77095,"-","Stage II sporulation protein B","FIG00012816","isu;Sporulation_gene_orphans"]
["scaffold4|size376322","fig|6666666.156949.peg.3517","peg","scaffold4|size376322_78973_78227",78973,78227,"-","Late competence protein ComC, processing protease; Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-)","FIG00146606","isu;Gram_Positive_Competence"]
["scaffold4|size376322","fig|6666666.156949.peg.3518","peg","scaffold4|size376322_79021_79149",79021,79149,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3519","peg","scaffold4|size376322_80405_79113",80405,79113,"-","Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17)","NA","isu;Folate_Biosynthesis isu;Folate_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3520","peg","scaffold4|size376322_83107_80465",83107,80465,"-","Valyl-tRNA synthetase (EC 6.1.1.9)","FIG00000129","isu;tRNA_aminoacylation,_Val"]
["scaffold4|size376322","fig|6666666.156949.peg.3521","peg","scaffold4|size376322_83554_83745",83554,83745,"+","FIG01226092: hypothetical protein","FIG01226091","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3522","peg","scaffold4|size376322_84789_83764",84789,83764,"-","CotS-related protein","FIG01332392","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3523","peg","scaffold4|size376322_86549_84822",86549,84822,"-","Stage VI sporulation protein D","FIG01964901","isu;Sporulation_gene_orphans"]
["scaffold4|size376322","fig|6666666.156949.peg.3524","peg","scaffold4|size376322_87972_86680",87972,86680,"-","Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)","FIG00000338","idu(1);CBSS-196164.1.peg.461 icw(1);Heme_and_Siroheme_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3525","peg","scaffold4|size376322_88976_88002",88976,88002,"-","Porphobilinogen synthase (EC 4.2.1.24)","FIG00000348","icw(4);Heme_and_Siroheme_Biosynthesis isu;Zinc_regulated_enzymes"]
["scaffold4|size376322","fig|6666666.156949.peg.3526","peg","scaffold4|size376322_89761_88973",89761,88973,"-","Uroporphyrinogen-III synthase (EC 4.2.1.75)","FIG00056694","idu(2);Heme_and_Siroheme_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3527","peg","scaffold4|size376322_90695_89751",90695,89751,"-","Porphobilinogen deaminase (EC 2.5.1.61)","FIG00000363","icw(2);Heme_and_Siroheme_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3528","peg","scaffold4|size376322_91447_90728",91447,90728,"-","HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase","FIG00010536","icw(1);CBSS-196164.1.peg.461 icw(3);Heme_and_Siroheme_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3529","peg","scaffold4|size376322_92933_91566",92933,91566,"-","Glutamyl-tRNA reductase (EC 1.2.1.70)","FIG00004795","icw(5);Heme_and_Siroheme_Biosynthesis isu;A_Gammaproteobacteria_Cluster_Relating_to_Translation"]
["scaffold4|size376322","fig|6666666.156949.peg.3530","peg","scaffold4|size376322_93163_93660",93163,93660,"+","FIG00673500: hypothetical protein","FIG01227589","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3531","peg","scaffold4|size376322_94269_93682",94269,93682,"-","GTP-binding protein EngB","FIG00000298","isu;Universal_GTPases"]
["scaffold4|size376322","fig|6666666.156949.peg.3532","peg","scaffold4|size376322_96590_94266",96590,94266,"-","ATP-dependent protease La (EC 3.4.21.53) Type I","FIG00132617","icw(1);Proteolysis_in_bacteria,_ATP-dependent icw(2);Proteasome_bacterial"]
["scaffold4|size376322","fig|6666666.156949.peg.3533","peg","scaffold4|size376322_98429_96771",98429,96771,"-","ATP-dependent protease La (EC 3.4.21.53) LonB Type I","FIG01306512","icw(1);Proteasome_bacterial"]
["scaffold4|size376322","fig|6666666.156949.peg.3534","peg","scaffold4|size376322_99845_98583",99845,98583,"-","ATP-dependent Clp protease ATP-binding subunit ClpX","FIG00000241","isu;Proteolysis_in_bacteria,_ATP-dependent isu;Proteasome_bacterial"]
["scaffold4|size376322","fig|6666666.156949.peg.3535","peg","scaffold4|size376322_101391_100117",101391,100117,"-","Cell division trigger factor (EC 5.2.1.8)","FIG00000286","isu;Bacterial_Cell_Division"]
["scaffold4|size376322","fig|6666666.156949.peg.3536","peg","scaffold4|size376322_102623_101619",102623,101619,"-","TPR repeat protein","FIG00673025","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3537","peg","scaffold4|size376322_102757_102626",102757,102626,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3538","peg","scaffold4|size376322_103341_102742",103341,102742,"-","3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)","FIG00000282","isu;Branched-Chain_Amino_Acid_Biosynthesis isu;Leucine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3539","peg","scaffold4|size376322_104772_103354",104772,103354,"-","3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)","FIG00000280","icw(3);Branched-Chain_Amino_Acid_Biosynthesis icw(1);Leucine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3540","peg","scaffold4|size376322_105919_104822",105919,104822,"-","3-isopropylmalate dehydrogenase (EC 1.1.1.85)","FIG00000341","icw(2);Branched-Chain_Amino_Acid_Biosynthesis icw(3);Leucine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3541","peg","scaffold4|size376322_107433_105940",107433,105940,"-","2-isopropylmalate synthase (EC 2.3.3.13)","FIG00000157","icw(1);Branched-Chain_Amino_Acid_Biosynthesis icw(2);Leucine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3542","peg","scaffold4|size376322_108511_107483",108511,107483,"-","Ketol-acid reductoisomerase (EC 1.1.1.86)","FIG00000244","isu;Coenzyme_A_Biosynthesis icw(4);Branched-Chain_Amino_Acid_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3543","peg","scaffold4|size376322_109053_108535",109053,108535,"-","Acetolactate synthase small subunit (EC 2.2.1.6)","FIG00000433","icw(1);Acetolactate_synthase_subunits icw(5);Branched-Chain_Amino_Acid_Biosynthesis icw(1);Acetoin,_butanediol_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3544","peg","scaffold4|size376322_110774_109050",110774,109050,"-","Acetolactate synthase large subunit (EC 2.2.1.6)","FIG00136692","isu;Acetolactate_synthase_subunits icw(3);Branched-Chain_Amino_Acid_Biosynthesis isu;Acetoin,_butanediol_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3545","peg","scaffold4|size376322_111294_111172",111294,111172,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3546","peg","scaffold4|size376322_111586_111921",111586,111921,"+","Uncharacterized protein ysnD","FIG01469090","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3547","peg","scaffold4|size376322_112087_112542",112087,112542,"+","acetyltransferase","FIG00945183","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3548","peg","scaffold4|size376322_112566_112724",112566,112724,"+","FIG01242806: hypothetical protein","FIG01669051","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3549","peg","scaffold4|size376322_112726_113547",112726,113547,"+","FIG01246588: hypothetical protein","FIG01246586","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.75","rna","scaffold4|size376322_113684_113611",113684,113611,"-","tRNA-Arg-TCT","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3550","peg","scaffold4|size376322_114322_113813",114322,113813,"-","FIG009886: phosphoesterase","FIG00005889","icw(1);Heat_shock_dnaK_gene_cluster_extended"]
["scaffold4|size376322","fig|6666666.156949.peg.3551","peg","scaffold4|size376322_114925_114338",114925,114338,"-","Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)","FIG00000584","isu;Heat_shock_dnaK_gene_cluster_extended isu;Housecleaning_nucleoside_triphosphate_pyrophosphatases"]
["scaffold4|size376322","fig|6666666.156949.peg.3552","peg","scaffold4|size376322_115684_114947",115684,114947,"-","Ribonuclease PH (EC 2.7.7.56)","FIG00135600","icw(2);Heat_shock_dnaK_gene_cluster_extended isu;tRNA_processing"]
["scaffold4|size376322","fig|6666666.156949.peg.3553","peg","scaffold4|size376322_116895_115795",116895,115795,"-","Germination (Cortex hydrolysis) and sporulation protein GerM","FIG01313118","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3554","peg","scaffold4|size376322_117825_117010",117825,117010,"-","Glutamate racemase (EC 5.1.1.3)","FIG00000397","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(1);Poly-gamma-glutamate_biosynthesis idu(1);Peptidoglycan_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3555","peg","scaffold4|size376322_118276_117836",118276,117836,"-","Transcriptional regulator, MarR family","FIG00554610","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3556","peg","scaffold4|size376322_118270_118386",118270,118386,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3557","peg","scaffold4|size376322_118744_118520",118744,118520,"-","Major transcriptional regulator of spore coat formation GerE","FIG00017120","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3558","peg","scaffold4|size376322_119303_118860",119303,118860,"-","4-hydroxybenzoyl-CoA thioesterase family active site","NA","idu(1);Ton_and_Tol_transport_systems"]
["scaffold4|size376322","fig|6666666.156949.peg.3559","peg","scaffold4|size376322_120125_119364",120125,119364,"-","Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)","FIG00026006","icw(1);TCA_Cycle isu;Succinate_dehydrogenase isu;5-FCL-like_protein icw(1);Serine-glyoxylate_cycle"]
["scaffold4|size376322","fig|6666666.156949.peg.3560","peg","scaffold4|size376322_121888_120128",121888,120128,"-","Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)","FIG00136922","isu;TCA_Cycle icw(2);Succinate_dehydrogenase isu;Serine-glyoxylate_cycle"]
["scaffold4|size376322","fig|6666666.156949.peg.3561","peg","scaffold4|size376322_122530_121922",122530,121922,"-","Succinate dehydrogenase cytochrome b558 subunit","FIG01304139","icw(1);Succinate_dehydrogenase"]
["scaffold4|size376322","fig|6666666.156949.peg.3562","peg","scaffold4|size376322_122823_123269",122823,123269,"+","FIG01227099: hypothetical protein","FIG01227098","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3563","peg","scaffold4|size376322_124539_123313",124539,123313,"-","Aspartokinase (EC 2.7.2.4)","FIG00000132","idu(2);Lysine_Biosynthesis_DAP_Pathway idu(2);Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch idu(2);Threonine_and_Homoserine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3564","peg","scaffold4|size376322_124831_124715",124831,124715,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3565","peg","scaffold4|size376322_126681_124909",126681,124909,"-","Excinuclease ABC subunit C","FIG00000185","isu;DNA_repair,_UvrABC_system"]
["scaffold4|size376322","fig|6666666.156949.peg.3566","peg","scaffold4|size376322_127131_126817",127131,126817,"-","Thioredoxin","FIG01970755","idu(4);CBSS-315749.4.peg.3658 idu(4);Glycine_reductase,_sarcosine_reductase_and_betaine_reductase"]
["scaffold4|size376322","fig|6666666.156949.peg.3567","peg","scaffold4|size376322_127157_127279",127157,127279,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3568","peg","scaffold4|size376322_127467_127276",127467,127276,"-","FIG01240809: hypothetical protein","FIG01432534","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3569","peg","scaffold4|size376322_128962_127454",128962,127454,"-","Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)","FIG00037240","isu;L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3570","peg","scaffold4|size376322_130137_129160",130137,129160,"-","Electron transfer flavoprotein, alpha subunit","FIG00136866","icw(2);Lysine_fermentation isu;Acetyl-CoA_fermentation_to_Butyrate"]
["scaffold4|size376322","fig|6666666.156949.peg.3571","peg","scaffold4|size376322_130946_130173",130946,130173,"-","Electron transfer flavoprotein, beta subunit","FIG01304886","icw(1);Lysine_fermentation icw(2);Acetyl-CoA_fermentation_to_Butyrate isu;Heme,_hemin_uptake_and_utilization_systems_in_GramNegatives"]
["scaffold4|size376322","fig|6666666.156949.peg.3572","peg","scaffold4|size376322_131737_130961",131737,130961,"-","Enoyl-CoA hydratase (EC 4.2.1.17)","FIG00033206","icw(1);n-Phenylalkanoic_acid_degradation idu(3);Polyhydroxybutyrate_metabolism idu(3);Isoleucine_degradation icw(1);Fatty_acid_metabolism_cluster idu(3);Butyrate_metabolism_cluster idu(3);Lysine_fermentation idu(3);Butanol_Biosynthesis icw(1);Acetyl-CoA_fermentation_to_Butyrate idu(3);Valine_degradation"]
["scaffold4|size376322","fig|6666666.156949.peg.3573","peg","scaffold4|size376322_132336_131752",132336,131752,"-","Fatty acid degradation regulator YsiA, TetR family","FIG01322255","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3574","peg","scaffold4|size376322_134123_132441",134123,132441,"-","Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)","NA","idu(2);n-Phenylalkanoic_acid_degradation idu(2);Fatty_acid_metabolism_cluster idu(2);Biotin_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3575","peg","scaffold4|size376322_134716_134312",134716,134312,"-","DUF350 domain-containing protein","FIG01340986","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3576","peg","scaffold4|size376322_137088_134731",137088,134731,"-","Recombination inhibitory protein MutS2","FIG00000990","isu;DNA_repair,_bacterial_MutL-MutS_system isu;CBSS-198094.1.peg.4426"]
["scaffold4|size376322","fig|6666666.156949.peg.3577","peg","scaffold4|size376322_138821_137109",138821,137109,"-","DNA polymerase X family","FIG00009897","icw(3);CBSS-198094.1.peg.4426"]
["scaffold4|size376322","fig|6666666.156949.peg.3578","peg","scaffold4|size376322_139428_138895",139428,138895,"-","Possible colicin V production protein","FIG00340141","icw(2);CBSS-198094.1.peg.4426"]
["scaffold4|size376322","fig|6666666.156949.peg.3579","peg","scaffold4|size376322_139692_139435",139692,139435,"-","Z-ring-associated protein","FIG01321927","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3580","peg","scaffold4|size376322_139826_140764",139826,140764,"+","Ribonuclease HIII (EC 3.1.26.4)","FIG00001474","isu;Ribonuclease_H isu;Ribonucleases_in_Bacillus icw(1);CBSS-198094.1.peg.4426"]
["scaffold4|size376322","fig|6666666.156949.peg.3581","peg","scaffold4|size376322_143214_140800",143214,140800,"-","Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)","FIG00000116","icw(1);tRNA_aminoacylation,_Phe"]
["scaffold4|size376322","fig|6666666.156949.peg.3582","peg","scaffold4|size376322_144264_143230",144264,143230,"-","Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)","FIG00000098","isu;tRNA_aminoacylation,_Phe"]
["scaffold4|size376322","fig|6666666.156949.peg.3583","peg","scaffold4|size376322_144346_144552",144346,144552,"+","FIG01236868: hypothetical protein","FIG01404450","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3584","peg","scaffold4|size376322_145365_144619",145365,144619,"-","FIG011178: rRNA methylase","FIG01289107","isu;RNA_methylation"]
["scaffold4|size376322","fig|6666666.156949.peg.3585","peg","scaffold4|size376322_145484_145699",145484,145699,"+","Small, acid-soluble spore protein","FIG01226347","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3586","peg","scaffold4|size376322_145768_146874",145768,146874,"+","Predicted glycolate dehydrogenase regulator","FIG01341934","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3587","peg","scaffold4|size376322_146977_148389",146977,148389,"+","Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD","FIG00001220","icw(1);Glycolate,_glyoxylate_interconversions"]
["scaffold4|size376322","fig|6666666.156949.peg.3588","peg","scaffold4|size376322_148386_149720",148386,149720,"+","Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF","FIG00001333","isu;Glycolate,_glyoxylate_interconversions"]
["scaffold4|size376322","fig|6666666.156949.peg.3589","peg","scaffold4|size376322_150139_149759",150139,149759,"-","Lactoylglutathione lyase (EC 4.4.1.5)","FIG00004743","isu;Glutathione:_Non-redox_reactions isu;Methylglyoxal_Metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3590","peg","scaffold4|size376322_151969_150173",151969,150173,"-","Carbon starvation protein A","FIG00001750","isu;Two-component_sensor_regulator_linked_to_Carbon_Starvation_Protein_A isu;Carbon_Starvation"]
["scaffold4|size376322","fig|6666666.156949.peg.3591","peg","scaffold4|size376322_153623_152121",153623,152121,"-","Alpha-N-arabinofuranosidase (EC 3.2.1.55)","FIG00007157","isu;L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3592","peg","scaffold4|size376322_154487_153642",154487,153642,"-","Alpha-arabinosides ABC transport system, permease protein 2","FIG00121366","icw(2);L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3593","peg","scaffold4|size376322_155429_154488",155429,154488,"-","Alpha-arabinosides ABC transport system, permease protein 1","FIG00081553","icw(5);L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3594","peg","scaffold4|size376322_156766_155465",156766,155465,"-","Alpha-arabinosides ABC transport system, substrate-binding protein","FIG00221658","icw(5);L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3595","peg","scaffold4|size376322_157981_156797",157981,156797,"-","Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)","FIG00132673","isu;Respiratory_dehydrogenases_1 isu;Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria"]
["scaffold4|size376322","fig|6666666.156949.peg.3596","peg","scaffold4|size376322_158787_157978",158787,157978,"-","Arabinose operon protein AraL","FIG01963496","icw(1);L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3597","peg","scaffold4|size376322_159463_158774",159463,158774,"-","L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)","FIG00000986","isu;L-ascorbate_utilization_(and_related_gene_clusters) icw(2);L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3598","peg","scaffold4|size376322_161162_159480",161162,159480,"-","Ribulokinase (EC 2.7.1.16)","FIG00002300","icw(3);L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3599","peg","scaffold4|size376322_162666_161176",162666,161176,"-","L-arabinose isomerase (EC 5.3.1.4)","FIG00002117","isu;L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3600","peg","scaffold4|size376322_162871_162740",162871,162740,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3601","peg","scaffold4|size376322_163815_162844",163815,162844,"-","Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)","FIG00036772","icw(4);L-Arabinose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3602","peg","scaffold4|size376322_165099_164014",165099,164014,"-","Peptidase, M42 family","FIG01226200","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3603","peg","scaffold4|size376322_165283_165675",165283,165675,"+","FIG01231657: hypothetical protein","FIG01231656","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3604","peg","scaffold4|size376322_165960_165691",165960,165691,"-","FIG01226888: hypothetical protein","FIG01226887","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3605","peg","scaffold4|size376322_166376_166017",166376,166017,"-","LSU ribosomal protein L20p","FIG00000216","icw(1);Ribosome_LSU_bacterial icw(2);Mycobacterium_virulence_operon_involved_in_protein_synthesis_(LSU_ribosomal_proteins)"]
["scaffold4|size376322","fig|6666666.156949.peg.3606","peg","scaffold4|size376322_166608_166408",166608,166408,"-","LSU ribosomal protein L35p","FIG00000259","isu;Ribosome_LSU_bacterial isu;Mycobacterium_virulence_operon_involved_in_protein_synthesis_(LSU_ribosomal_proteins)"]
["scaffold4|size376322","fig|6666666.156949.peg.3607","peg","scaffold4|size376322_167124_166621",167124,166621,"-","Translation initiation factor 3","FIG00000206","isu;Translation_initiation_factors_bacterial icw(1);Mycobacterium_virulence_operon_involved_in_protein_synthesis_(LSU_ribosomal_proteins)"]
["scaffold4|size376322","fig|6666666.156949.peg.3608","peg","scaffold4|size376322_167426_167539",167426,167539,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3609","peg","scaffold4|size376322_167589_168251",167589,168251,"+","FIG01239074: hypothetical protein","FIG01239072","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3610","peg","scaffold4|size376322_168978_168283",168978,168283,"-","LrgA-associated membrane protein LrgB","FIG00000822","isu;Murein_hydrolase_regulation_and_cell_death"]
["scaffold4|size376322","fig|6666666.156949.peg.3611","peg","scaffold4|size376322_169440_169000",169440,169000,"-","Antiholin-like protein LrgA","FIG00000832","icw(2);Murein_hydrolase_regulation_and_cell_death"]
["scaffold4|size376322","fig|6666666.156949.peg.3612","peg","scaffold4|size376322_170299_169574",170299,169574,"-","Autolysis response regulater LytR","FIG00023143","icw(3);Murein_hydrolase_regulation_and_cell_death"]
["scaffold4|size376322","fig|6666666.156949.peg.3613","peg","scaffold4|size376322_172058_170277",172058,170277,"-","Autolysis histidine kinase LytS","FIG00138960","icw(1);Murein_hydrolase_regulation_and_cell_death"]
["scaffold4|size376322","fig|6666666.156949.peg.3614","peg","scaffold4|size376322_172224_173006",172224,173006,"+","Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase","FIG00001529","isu;Riboflavin,_FMN_and_FAD_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3615","peg","scaffold4|size376322_174976_173045",174976,173045,"-","Threonyl-tRNA synthetase (EC 6.1.1.3)","FIG00000101","idu(1);tRNA_aminoacylation,_Thr"]
["scaffold4|size376322","fig|6666666.156949.peg.3616","peg","scaffold4|size376322_176216_175371",176216,175371,"-","FIG01227197: hypothetical protein","FIG01227196","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3617","peg","scaffold4|size376322_176936_176295",176936,176295,"-","CONSERVED MEMBRANE PROTEIN","FIG00818075","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3618","peg","scaffold4|size376322_177905_176970",177905,176970,"-","Helicase loader DnaI","FIG00001402","isu;DNA-replication"]
["scaffold4|size376322","fig|6666666.156949.peg.3619","peg","scaffold4|size376322_179351_177933",179351,177933,"-","Helicase loader DnaB","FIG01312154","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3620","peg","scaffold4|size376322_179795_179466",179795,179466,"-","Ribonucleotide reductase transcriptional regulator NrdR","FIG00000382","isu;Ribonucleotide_reduction"]
["scaffold4|size376322","fig|6666666.156949.peg.3621","peg","scaffold4|size376322_180578_180198",180578,180198,"-","S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B","FIG00001552","isu;Polyamine_Metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3622","peg","scaffold4|size376322_181839_180817",181839,180817,"-","NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)","FIG01126072","isu;Calvin-Benson_cycle isu;Redox-dependent_regulation_of_nucleus_processes isu;Glycolysis_and_Gluconeogenesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3623","peg","scaffold4|size376322_182425_182045",182425,182045,"-","Transcriptional regulator, HxlR family","FIG00906075","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3624","peg","scaffold4|size376322_182609_183799",182609,183799,"+","Putative drug efflux protein","FIG01228652","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3625","peg","scaffold4|size376322_183824_184666",183824,184666,"+","oxidoreductase of aldo/keto reductase family, subgroup 1","FIG01239241","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3626","peg","scaffold4|size376322_185300_184707",185300,184707,"-","Dephospho-CoA kinase (EC 2.7.1.24)","FIG00000267","idu(1);Coenzyme_A_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3627","peg","scaffold4|size376322_185948_185316",185948,185316,"-","membrane protein, putative","FIG00439698","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3628","peg","scaffold4|size376322_186951_186115",186951,186115,"-","Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)","FIG00035634","isu;DNA_Repair_Base_Excision"]
["scaffold4|size376322","fig|6666666.156949.peg.3629","peg","scaffold4|size376322_189610_186968",189610,186968,"-","DNA polymerase I (EC 2.7.7.7)","FIG00000404","icw(1);DNA_Repair_Base_Excision idu(1);DNA-replication"]
["scaffold4|size376322","fig|6666666.156949.peg.3630","peg","scaffold4|size376322_191593_189854",191593,189854,"-","Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)","FIG00073301","idu(1);PhoR-PhoB_two-component_regulatory_system idu(1);High_affinity_phosphate_transporter_and_control_of_PHO_regulon icw(1);Phosphate_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3631","peg","scaffold4|size376322_192308_191586",192308,191586,"-","Alkaline phosphatase synthesis transcriptional regulatory protein PhoP","FIG00009996","icw(1);High_affinity_phosphate_transporter_and_control_of_PHO_regulon idu(1);Phosphate_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3632","peg","scaffold4|size376322_192370_192498",192370,192498,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3633","peg","scaffold4|size376322_193458_192520",193458,192520,"-","Malate dehydrogenase (EC 1.1.1.37)","FIG00000455","icw(1);TCA_Cycle isu;Glyoxylate_bypass isu;Serine-glyoxylate_cycle"]
["scaffold4|size376322","fig|6666666.156949.peg.3634","peg","scaffold4|size376322_194773_193502",194773,193502,"-","Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)","FIG00000600","isu;TCA_Cycle isu;5-FCL-like_protein"]
["scaffold4|size376322","fig|6666666.156949.peg.3635","peg","scaffold4|size376322_196056_194938",196056,194938,"-","Citrate synthase (si) (EC 2.3.3.1)","FIG00130344","icw(2);TCA_Cycle icw(1);Glyoxylate_bypass icw(1);Serine-glyoxylate_cycle"]
["scaffold4|size376322","fig|6666666.156949.peg.3636","peg","scaffold4|size376322_196853_196389",196853,196389,"-","putative membrane protein","FIG00092051","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3637","peg","scaffold4|size376322_196950_198065",196950,198065,"+","UPF0118 membrane protein ytvI","FIG01308079","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3638","peg","scaffold4|size376322_198481_198098",198481,198098,"-","FxsA protein","FIG01200084","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3639","peg","scaffold4|size376322_200331_198574",200331,198574,"-","Pyruvate kinase (EC 2.7.1.40)","FIG00000043","icw(1);Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes isu;Glycerate_metabolism isu;Entner-Doudoroff_Pathway icw(1);Glycolysis_and_Gluconeogenesis icw(1);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold4|size376322","fig|6666666.156949.peg.3640","peg","scaffold4|size376322_201333_200374",201333,200374,"-","6-phosphofructokinase (EC 2.7.1.11)","FIG00058830","isu;Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes isu;D-Tagatose_and_Galactitol_Utilization isu;N-Acetyl-Galactosamine_and_Galactosamine_Utilization isu;Glycolysis_and_Gluconeogenesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3641","peg","scaffold4|size376322_201358_201471",201358,201471,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3642","peg","scaffold4|size376322_202494_201517",202494,201517,"-","Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)","FIG00000442","idu(1);Fatty_Acid_Biosynthesis_FASII"]
["scaffold4|size376322","fig|6666666.156949.peg.3643","peg","scaffold4|size376322_203351_202479",203351,202479,"-","Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)","FIG00000437","icw(1);Fatty_Acid_Biosynthesis_FASII"]
["scaffold4|size376322","fig|6666666.156949.peg.3644","peg","scaffold4|size376322_204918_203686",204918,203686,"-","NADP-dependent malic enzyme (EC 1.1.1.40)","FIG00000777","isu;Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold4|size376322","fig|6666666.156949.peg.3645","peg","scaffold4|size376322_208402_205055",208402,205055,"-","DNA polymerase III alpha subunit (EC 2.7.7.7)","FIG00008411","icw(1);CBSS-269801.1.peg.809 idu(1);CBSS-350688.3.peg.1509 idu(1);DNA-replication"]
["scaffold4|size376322","fig|6666666.156949.peg.3646","peg","scaffold4|size376322_208542_208883",208542,208883,"+","FIG012070: hypothetical protein","FIG01314981","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3647","peg","scaffold4|size376322_208880_209383",208880,209383,"+","FIG013210: hypothetical protein","FIG01322695","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3648","peg","scaffold4|size376322_209485_209676",209485,209676,"+","FIG01230608: hypothetical protein","FIG01230607","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3649","peg","scaffold4|size376322_210635_209694",210635,209694,"-","FIG146085: 3'-to-5' oligoribonuclease A, Bacillus type","NA","isu;RNA_processing_and_degradation,_bacterial icw(1);CBSS-269801.1.peg.809 isu;CBSS-138119.3.peg.2719"]
["scaffold4|size376322","fig|6666666.156949.peg.3650","peg","scaffold4|size376322_210711_210598",210711,210598,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3651","peg","scaffold4|size376322_210766_211068",210766,211068,"+","FIG062906: hypothetical Membrane Spanning Protein","FIG00673114","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3652","peg","scaffold4|size376322_212406_211087",212406,211087,"-","FIG009439: Cytosolic protein containing multiple CBS domains","FIG00009439","icw(2);CBSS-269801.1.peg.809"]
["scaffold4|size376322","fig|6666666.156949.peg.3653","peg","scaffold4|size376322_213200_212517",213200,212517,"-","FIG002379: metal-dependent hydrolase","FIG00002379","isu;CBSS-269801.1.peg.809"]
["scaffold4|size376322","fig|6666666.156949.peg.3654","peg","scaffold4|size376322_214030_213263",214030,213263,"-","3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)","FIG00621114","idu(6);CBSS-246196.1.peg.364 idu(6);Fatty_Acid_Biosynthesis_FASII"]
["scaffold4|size376322","fig|6666666.156949.peg.3655","peg","scaffold4|size376322_214291_214157",214291,214157,"-","unknown","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3656","peg","scaffold4|size376322_215738_214353",215738,214353,"-","Argininosuccinate lyase (EC 4.3.2.1)","FIG00000333","isu;Arginine_Biosynthesis_--_gjo isu;Arginine_Biosynthesis_extended"]
["scaffold4|size376322","fig|6666666.156949.peg.3657","peg","scaffold4|size376322_216946_215735",216946,215735,"-","Argininosuccinate synthase (EC 6.3.4.5)","FIG00000301","icw(1);Arginine_Biosynthesis_--_gjo icw(1);Arginine_Biosynthesis_extended"]
["scaffold4|size376322","fig|6666666.156949.peg.3658","peg","scaffold4|size376322_217628_217116",217628,217116,"-","Molybdenum cofactor biosynthesis protein MoaB","FIG00032229","isu;ar-104-EC_Molybdenum_cofactor_biosynthesis_moaABCDE isu;Molybdenum_cofactor_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3659","peg","scaffold4|size376322_219008_217713",219008,217713,"-","Acetate kinase (EC 2.7.2.1)","FIG00067248","isu;Fermentations:_Lactate icw(2);CBSS-257314.1.peg.752 isu;Threonine_anaerobic_catabolism_gene_cluster isu;Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate isu;Ethanolamine_utilization isu;Fermentations:_Mixed_acid"]
["scaffold4|size376322","fig|6666666.156949.peg.3660","peg","scaffold4|size376322_219210_219073",219210,219073,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3661","peg","scaffold4|size376322_220237_219248",220237,219248,"-","Adenine-specific methyltransferase (EC 2.1.1.72)","FIG00001670","icw(1);CBSS-257314.1.peg.752"]
["scaffold4|size376322","fig|6666666.156949.peg.3662","peg","scaffold4|size376322_220801_220298",220801,220298,"-","Thiol peroxidase, Tpx-type (EC 1.11.1.15)","FIG00002857","isu;CBSS-257314.1.peg.752 isu;Thioredoxin-disulfide_reductase"]
["scaffold4|size376322","fig|6666666.156949.peg.3663","peg","scaffold4|size376322_221365_220910",221365,220910,"-","Sporulation protein, YTFJ Bacillus subtilis ortholog","FIG00672821","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3664","peg","scaffold4|size376322_222083_221379",222083,221379,"-","putative secreted protein","FIG00905474","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3665","peg","scaffold4|size376322_222628_222134",222628,222134,"-","BH3197 unknown conserved protein","FIG01315855","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3666","peg","scaffold4|size376322_223648_222641",223648,222641,"-","Protease IV (EC 3.4.21.-)","FIG01327138","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3667","peg","scaffold4|size376322_223713_223853",223713,223853,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3668","peg","scaffold4|size376322_223834_224634,scaffold4|size376322_224638_224700",223834,224700,"+","NAD kinase (EC 2.7.1.23)","FIG00000075","idu(1);NAD_and_NADP_cofactor_biosynthesis_global idu(1);CBSS-222523.1.peg.1311"]
["scaffold4|size376322","fig|6666666.156949.peg.3669","peg","scaffold4|size376322_226258_224669",226258,224669,"-","Exoenzymes regulatory protein AepA in lipid-linked oligosaccharide synthesis cluster","FIG01028825","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3670","peg","scaffold4|size376322_227867_226278",227867,226278,"-","Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, YtcI homolog","FIG00147720","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3671","peg","scaffold4|size376322_228255_228046",228255,228046,"-","Small acid-soluble spore protein, alpha/beta family, SASP_1","NA","idu(1);Small_acid-soluble_spore_proteins"]
["scaffold4|size376322","fig|6666666.156949.peg.3672","peg","scaffold4|size376322_229554_228349",229554,228349,"-","tRNA S(4)U 4-thiouridine synthase (former ThiI)","NA","icw(1);tRNA_modification_Bacteria isu;Thiamin_biosynthesis isu;CBSS-393130.3.peg.794"]
["scaffold4|size376322","fig|6666666.156949.peg.3673","peg","scaffold4|size376322_230703_229558",230703,229558,"-","Cysteine desulfurase (EC 2.8.1.7)","FIG00000001","idu(3);tRNA_modification_Bacteria idu(3);CBSS-84588.1.peg.1247 idu(3);Iron-sulfur_cluster_assembly icw(1);CBSS-393130.3.peg.794 idu(3);mnm5U34_biosynthesis_bacteria idu(3);Alanine_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3674","peg","scaffold4|size376322_230898_232235",230898,232235,"+","Branched-chain amino acid transport system carrier protein","FIG00905542","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3675","peg","scaffold4|size376322_234019_232331",234019,232331,"-","Septation ring formation regulator EzrA","FIG00002311","icw(3);CBSS-393130.3.peg.794 isu;Control_of_cell_elongation_-_division_cycle_in_Bacilli"]
["scaffold4|size376322","fig|6666666.156949.peg.3676","peg","scaffold4|size376322_234216_235022",234216,235022,"+","Histidinol-phosphatase (EC 3.1.3.15)","FIG00229257","isu;Histidine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3677","peg","scaffold4|size376322_235642_235019",235642,235019,"-","Transcriptional regulator, TetR family","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3678","peg","scaffold4|size376322_235769_236260",235769,236260,"+","Free methionine-(R)-sulfoxide reductase, contains GAF domain","FIG00002672","isu;CBSS-393130.3.peg.794"]
["scaffold4|size376322","fig|6666666.156949.peg.3679","peg","scaffold4|size376322_238037_236298",238037,236298,"-","GGDEF family protein","FIG01956123","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3680","peg","scaffold4|size376322_238302_238123,scaffold4|size376322_238119_238063",238302,238063,"-","FIG01245330: hypothetical protein","FIG01245326","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3681","peg","scaffold4|size376322_238332_238934",238332,238934,"+","SSU ribosomal protein S4p (S9e)","FIG00000148","icw(1);CBSS-393130.3.peg.794"]
["scaffold4|size376322","fig|6666666.156949.peg.3682","peg","scaffold4|size376322_239084_238956",239084,238956,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3683","peg","scaffold4|size376322_240482_239214",240482,239214,"-","Tyrosyl-tRNA synthetase (EC 6.1.1.1)","FIG00346039","idu(1);tRNA_aminoacylation,_Tyr"]
["scaffold4|size376322","fig|6666666.156949.peg.3684","peg","scaffold4|size376322_242542_240824",242542,240824,"-","Acetyl-coenzyme A synthetase (EC 6.2.1.1)","FIG00022631","isu;Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate isu;Ketoisovalerate_oxidoreductase"]
["scaffold4|size376322","fig|6666666.156949.peg.3685","peg","scaffold4|size376322_242703_243335",242703,243335,"+","Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor","FIG00003447","icw(2);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold4|size376322","fig|6666666.156949.peg.3686","peg","scaffold4|size376322_243362_244006",243362,244006,"+","CBS domain protein AcuB","FIG01386257","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3687","peg","scaffold4|size376322_243976_245166",243976,245166,"+","NAD-independent protein deacetylase AcuC","FIG00012711","icw(1);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold4|size376322","fig|6666666.156949.peg.3688","peg","scaffold4|size376322_245905_245177",245905,245177,"-","Flagellar motor rotation protein MotB","FIG00025360","idu(1);Flagellar_motility idu(1);Flagellum idu(1);CBSS-323098.3.peg.2823"]
["scaffold4|size376322","fig|6666666.156949.peg.3689","peg","scaffold4|size376322_246737_245895",246737,245895,"-","Flagellar motor rotation protein MotA","FIG00000438","icw(1);Flagellar_motility icw(1);Flagellum"]
["scaffold4|size376322","fig|6666666.156949.peg.3690","peg","scaffold4|size376322_247780_246776",247780,246776,"-","Catabolite control protein A","FIG00048507","isu;HPr_catabolite_repression_system"]
["scaffold4|size376322","fig|6666666.156949.peg.3691","peg","scaffold4|size376322_249141_248056",249141,248056,"-","Chorismate mutase I (EC 5.4.99.5) / 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)","FIG00133676","isu;Chorismate_Synthesis isu;Chorismate_Synthesis isu;Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate) isu;Phenylalanine_and_Tyrosine_Branches_from_Chorismate"]
["scaffold4|size376322","fig|6666666.156949.peg.3692","peg","scaffold4|size376322_249694_249368",249694,249368,"-","Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)","FIG00133002","icw(2);Pyridoxin_(Vitamin_B6)_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3693","peg","scaffold4|size376322_250176_249718",250176,249718,"-","Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)","FIG00133002","icw(2);Pyridoxin_(Vitamin_B6)_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3694","peg","scaffold4|size376322_250626_250204",250626,250204,"-","Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)","FIG00133002","icw(2);Pyridoxin_(Vitamin_B6)_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3695","peg","scaffold4|size376322_252086_250788",252086,250788,"-","UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)","FIG00135554","isu;cell_division_cluster_containing_FtsQ isu;Peptidoglycan_Biosynthesis isu;Peptidoglycan_biosynthesis--gjo"]
["scaffold4|size376322","fig|6666666.156949.peg.3696","peg","scaffold4|size376322_255194_252336",255194,252336,"-","Cell division protein FtsK","FIG00000287","idu(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);Bacterial_Cell_Division idu(1);Bacterial_Cytoskeleton idu(1);Unspecified_monosaccharide_transport_cluster"]
["scaffold4|size376322","fig|6666666.156949.peg.3697","peg","scaffold4|size376322_255959_255354",255959,255354,"-","Phenylalanyl-tRNA synthetase domain protein (Bsu YtpR)","FIG00006002","isu;tRNA_aminoacylation,_Phe"]
["scaffold4|size376322","fig|6666666.156949.peg.3698","peg","scaffold4|size376322_256784_255975",256784,255975,"-","FIG002434: Uncharacterized protein YtpQ","FIG00002434","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3699","peg","scaffold4|size376322_257122_256799",257122,256799,"-","FIG009688: Thioredoxin","FIG00009688","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3700","peg","scaffold4|size376322_257277_257161",257277,257161,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3701","peg","scaffold4|size376322_257356_257802",257356,257802,"+","unknown","FIG01966311","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3702","peg","scaffold4|size376322_258930_257857",258930,257857,"-","Glutamyl aminopeptidase (EC 3.4.11.7); Deblocking aminopeptidase","FIG00695944","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3703","peg","scaffold4|size376322_258976_259092",258976,259092,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3704","peg","scaffold4|size376322_259089_259406",259089,259406,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3705","peg","scaffold4|size376322_261159_259459",261159,259459,"-","NAD-dependent malic enzyme (EC 1.1.1.38)","FIG00000835","idu(2);Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold4|size376322","fig|6666666.156949.peg.3706","peg","scaffold4|size376322_262087_261242",262087,261242,"-","metallo-beta-lactamase family protein","FIG00882049","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3707","peg","scaffold4|size376322_262798_262157",262798,262157,"-","tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)","FIG00002733","isu;tRNA_modification_Bacteria isu;RNA_methylation"]
["scaffold4|size376322","fig|6666666.156949.peg.3708","peg","scaffold4|size376322_263005_263283",263005,263283,"+","FIG01225636: hypothetical protein","FIG01225635","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3709","peg","scaffold4|size376322_264081_263284",264081,263284,"-","aminoglycoside phosphotransferase family protein","FIG00774582","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3710","peg","scaffold4|size376322_266417_264261",266417,264261,"-","Glycogen debranching enzyme (EC 3.2.1.-) / Pullulanase (EC 3.2.1.41)","FIG00017412","isu;Trehalose_Biosynthesis isu;Glycogen_metabolism_cluster isu;Glycogen_metabolism isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3711","peg","scaffold4|size376322_267372_266443",267372,266443,"-","Transcription regulator [contains diacylglycerol kinase catalytic domain]","FIG00001646","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3712","peg","scaffold4|size376322_268335_267421",268335,267421,"-","FIG01233842: hypothetical protein","FIG01233841","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3713","peg","scaffold4|size376322_268912_268361",268912,268361,"-","2'-5' RNA ligase","FIG00004261","isu;RNA_processing_orphans"]
["scaffold4|size376322","fig|6666666.156949.peg.3714","peg","scaffold4|size376322_269061_269996",269061,269996,"+","Cysteine synthase (EC 2.5.1.47)","FIG00064110","idu(1);Cysteine_Biosynthesis idu(1);Methionine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3715","peg","scaffold4|size376322_271421_270030",271421,270030,"-","Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases","FIG00011140","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3716","peg","scaffold4|size376322_271590_272813,scaffold4|size376322_272817_272822",271590,272822,"+","Xanthine/uracil/thiamine/ascorbate permease family protein","FIG00016110","isu;Purine_Utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3717","peg","scaffold4|size376322_274014_272857",274014,272857,"-","Protein ecsB","FIG01343747","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3718","peg","scaffold4|size376322_274721_274011",274721,274011,"-","ABC transporter, ATP-binding protein EcsA","FIG00005968","idu(1);EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins"]
["scaffold4|size376322","fig|6666666.156949.peg.3719","peg","scaffold4|size376322_275059_275232",275059,275232,"+","Transcriptional repressor of the fructose operon, DeoR family","FIG00001452","idu(1);Fructose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3720","peg","scaffold4|size376322_276073_275354",276073,275354,"-","Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)","FIG00002716","isu;RNA_pseudouridine_syntheses"]
["scaffold4|size376322","fig|6666666.156949.peg.3721","peg","scaffold4|size376322_277776_276142",277776,276142,"-","Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids","FIG01970683","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3722","peg","scaffold4|size376322_277955_279241",277955,279241,"+","NAD(FAD)-utilizing dehydrogenases","FIG01045177","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3723","peg","scaffold4|size376322_279430_280968",279430,280968,"+","Glycine betaine transporter OpuD","FIG00012746","isu;Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis isu;Niacin-Choline_transport_and_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3724","peg","scaffold4|size376322_281187_281005",281187,281005,"-","Protein cse60","FIG01347159","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3725","peg","scaffold4|size376322_281923_281255",281923,281255,"-","YTEU","FIG00628139","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3726","peg","scaffold4|size376322_283187_281946",283187,281946,"-","Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)","FIG00043259","idu(2);Inositol_catabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3727","peg","scaffold4|size376322_283666_283244",283666,283244,"-","unknown","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3728","peg","scaffold4|size376322_284856_283744",284856,283744,"-","Rhamnogalacturonides degradation protein RhiN","FIG00006764","idu(1);D-Galacturonate_and_D-Glucuronate_Utilization idu(1);L-rhamnose_utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3729","peg","scaffold4|size376322_285838_285500,scaffold4|size376322_285500_285459",285838,285459,"-","ABC-type polysaccharide transport system, permease component","FIG01116001","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3730","peg","scaffold4|size376322_286066_288372",286066,288372,"+","Transcriptional regulator, AraC family","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3731","peg","scaffold4|size376322_289909_288413",289909,288413,"-","lipoprotein","FIG00629430","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3732","peg","scaffold4|size376322_290815_289934",290815,289934,"-","Probable ABC transporter permease protein ytcP","FIG00627572","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3733","peg","scaffold4|size376322_291761_291000",291761,291000,"-","UDP-glucose 4-epimerase (EC 5.1.3.2)","FIG00022300","idu(3);Rhamnose_containing_glycans idu(3);Lactose_and_Galactose_Uptake_and_Utilization idu(3);N-linked_Glycosylation_in_Bacteria idu(3);Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway"]
["scaffold4|size376322","fig|6666666.156949.peg.3734","peg","scaffold4|size376322_293070_291838",293070,291838,"-","putative cytochrome P450 hydroxylase","FIG00032437","idu(3);Nitric_oxide_synthase"]
["scaffold4|size376322","fig|6666666.156949.peg.3735","peg","scaffold4|size376322_294101_293094",294101,293094,"-","Biotin synthase (EC 2.8.1.6)","FIG00000467","icw(1);Biotin_biosynthesis_Experimental icw(4);Biotin_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3736","peg","scaffold4|size376322_294799_294104",294799,294104,"-","Dethiobiotin synthetase (EC 6.3.3.3)","FIG00000423","isu;Biotin_biosynthesis_Experimental icw(3);Biotin_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3737","peg","scaffold4|size376322_295890_294796",295890,294796,"-","8-amino-7-oxononanoate synthase (EC 2.3.1.47)","FIG00051001","icw(3);Biotin_biosynthesis_Experimental icw(2);Biotin_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3738","peg","scaffold4|size376322_297301_295955",297301,295955,"-","Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)","FIG00012547","icw(2);Biotin_biosynthesis_Experimental icw(1);Biotin_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3739","peg","scaffold4|size376322_298025_297291",298025,297291,"-","Pimeloyl-CoA synthase (EC 6.2.1.14)","FIG00016920","isu;Biotin_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3740","peg","scaffold4|size376322_299175_298276",299175,298276,"-","FIG01232743: hypothetical protein","FIG01414447","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3741","peg","scaffold4|size376322_299303_299172",299303,299172,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3742","peg","scaffold4|size376322_299393_300427",299393,300427,"+","MSM (multiple sugar metabolism) operon regulatory protein","FIG01304229","icw(4);Fructooligosaccharides(FOS)_and_Raffinose_Utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3743","peg","scaffold4|size376322_300461_301741",300461,301741,"+","Multiple sugar ABC transporter, substrate-binding protein","FIG00007137","icw(1);Fructooligosaccharides(FOS)_and_Raffinose_Utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3744","peg","scaffold4|size376322_301734_302645",301734,302645,"+","Multiple sugar ABC transporter, membrane-spanning permease protein MsmF","FIG00007586","icw(3);Fructooligosaccharides(FOS)_and_Raffinose_Utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3745","peg","scaffold4|size376322_302642_303472",302642,303472,"+","Multiple sugar ABC transporter, membrane-spanning permease protein MsmG","FIG00007039","icw(2);Fructooligosaccharides(FOS)_and_Raffinose_Utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3746","peg","scaffold4|size376322_303492_304790",303492,304790,"+","Alpha-galactosidase (EC 3.2.1.22)","FIG00002020","idu(1);Melibiose_Utilization idu(1);Fructooligosaccharides(FOS)_and_Raffinose_Utilization idu(1);Lactose_and_Galactose_Uptake_and_Utilization idu(1);Galactosylceramide_and_Sulfatide_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3747","peg","scaffold4|size376322_305123_304812",305123,304812,"-","Rhodanese-like domain protein","FIG00003495","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3748","peg","scaffold4|size376322_307653_305239",307653,305239,"-","Leucyl-tRNA synthetase (EC 6.1.1.4)","FIG00000114","isu;tRNA_aminoacylation,_Leu"]
["scaffold4|size376322","fig|6666666.156949.peg.3749","peg","scaffold4|size376322_308367_308080",308367,308080,"-","unknown","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3750","peg","scaffold4|size376322_308537_308418",308537,308418,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3751","peg","scaffold4|size376322_308820_309605",308820,309605,"+","RsbR, positive regulator of sigma-B","FIG00001285","idu(5);SigmaB_stress_responce_regulation"]
["scaffold4|size376322","fig|6666666.156949.peg.3752","peg","scaffold4|size376322_311035_309842",311035,309842,"-","Multidrug resistance protein B","FIG01356213","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3753","peg","scaffold4|size376322_311224_311970",311224,311970,"+","FIG01233051: hypothetical protein","FIG01233050","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3754","peg","scaffold4|size376322_313947_312007",313947,312007,"-","Bacitracin export permease protein BceB","FIG00010632","icw(3);Bacitracin_Stress_Response"]
["scaffold4|size376322","fig|6666666.156949.peg.3755","peg","scaffold4|size376322_314698_313937",314698,313937,"-","Bacitracin export ATP-binding protein BceA","FIG00007257","icw(2);Bacitracin_Stress_Response"]
["scaffold4|size376322","fig|6666666.156949.peg.3756","peg","scaffold4|size376322_315804_314800",315804,314800,"-","Two-component sensor histidine kinase BceS","FIG00081591","isu;Bacitracin_Stress_Response"]
["scaffold4|size376322","fig|6666666.156949.peg.3757","peg","scaffold4|size376322_316492_315797",316492,315797,"-","Two-component response regulator BceR","FIG00147885","icw(1);Bacitracin_Stress_Response"]
["scaffold4|size376322","fig|6666666.156949.peg.3758","peg","scaffold4|size376322_317899_316589",317899,316589,"-","ABC transporter, permease protein","FIG01288623","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3759","peg","scaffold4|size376322_318584_317889",318584,317889,"-","Methionine ABC transporter ATP-binding protein","FIG00006151","idu(2);Methionine_Degradation idu(2);Methionine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3760","peg","scaffold4|size376322_319576_318599",319576,318599,"-","FIG01230851: hypothetical protein","FIG01230850","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3761","peg","scaffold4|size376322_320592_319606",320592,319606,"-","FIG01230851: hypothetical protein","FIG01230850","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3762","peg","scaffold4|size376322_321464_320586",321464,320586,"-","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3763","peg","scaffold4|size376322_321849_321457",321849,321457,"-","Transcriptional regulator, GntR family","FIG00621925","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3764","peg","scaffold4|size376322_322020_321883",322020,321883,"-","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3765","peg","scaffold4|size376322_322447_322175",322447,322175,"-","FIG01225931: hypothetical protein","FIG01225930","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3766","peg","scaffold4|size376322_322609_323577",322609,323577,"+","COG1242: Predicted Fe-S oxidoreductase","FIG00001867","isu;An_Fe-S_oxireductase_coupled_with_a_methyltransferase"]
["scaffold4|size376322","fig|6666666.156949.peg.3767","peg","scaffold4|size376322_323574_324164",323574,324164,"+","SAM-dependent methyltransferase, MraW methylase family (EC 2.1.1.-)","FIG00001761","icw(1);An_Fe-S_oxireductase_coupled_with_a_methyltransferase"]
["scaffold4|size376322","fig|6666666.156949.peg.3768","peg","scaffold4|size376322_325255_324149",325255,324149,"-","Tetraprenyl-beta-curcumene synthase (EC 4.2.3.130)","FIG01226831","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3769","peg","scaffold4|size376322_326052_325273",326052,325273,"-","Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23); putative","FIG00001043","isu;Triacylglycerol_metabolism isu;Triacylglycerol_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3770","peg","scaffold4|size376322_326101_326616",326101,326616,"+","carbonic anhydrase, family 3","FIG00553719","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3771","peg","scaffold4|size376322_328253_326862",328253,326862,"-","amino acid permease family protein","FIG01308903","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3772","peg","scaffold4|size376322_330287_328389",330287,328389,"-","Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnB","FIG00229379","isu;Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3773","peg","scaffold4|size376322_331639_330437",331639,330437,"-","S-adenosylmethionine synthetase (EC 2.5.1.6)","FIG00000329","isu;Methionine_Degradation isu;Methionine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3774","peg","scaffold4|size376322_332142_333725",332142,333725,"+","Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)","FIG00000834","isu;Serine-glyoxylate_cycle isu;Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"]
["scaffold4|size376322","fig|6666666.156949.peg.3775","peg","scaffold4|size376322_334006_333764",334006,333764,"-","FIG00774067: hypothetical protein","FIG00774066","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3776","peg","scaffold4|size376322_334831_334058",334831,334058,"-","Dipeptidyl aminopeptidases/acylaminoacyl-peptidases","FIG00674390","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3777","peg","scaffold4|size376322_334983_335588,scaffold4|size376322_335590_335673",334983,335673,"+","ABC transporter substrate-binding protein","FIG01963663","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3778","peg","scaffold4|size376322_336000_336782",336000,336782,"+","Hydroxymethylpyrimidine ABC transporter, ATPase component","FIG00055202","isu;Thiamin_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3779","peg","scaffold4|size376322_336757_337569",336757,337569,"+","Hydroxymethylpyrimidine ABC transporter, transmembrane component","FIG00014444","icw(1);Thiamin_biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3780","peg","scaffold4|size376322_338072_337596",338072,337596,"-","Low G+C gram positive nudix hydrolase YtkD (EC 3.6.-.-)","FIG00002401","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3781","peg","scaffold4|size376322_338685_338281",338685,338281,"-","FIG01229566: hypothetical protein","FIG01229564","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3782","peg","scaffold4|size376322_339288_338851",339288,338851,"-","Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1)","FIG00017247","idu(1);Oxidative_stress idu(1);Oxidative_stress idu(1);Oxidative_stress"]
["scaffold4|size376322","fig|6666666.156949.peg.3783","peg","scaffold4|size376322_339417_339557",339417,339557,"+","hypothetical protein","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3784","peg","scaffold4|size376322_339988_339551",339988,339551,"-","FIG01243046: hypothetical protein","FIG01243045","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3785","peg","scaffold4|size376322_340581_340108",340581,340108,"-","S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS","FIG00000845","isu;Methionine_Degradation isu;Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon) isu;Methionine_Biosynthesis"]
["scaffold4|size376322","fig|6666666.156949.peg.3786","peg","scaffold4|size376322_340710_340937",340710,340937,"+","Protein YidD","FIG00004843","isu;RNA_modification_cluster isu;Cell_Division_Subsystem_including_YidCD isu;Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_a_Jag_Protein_and_YidC_and_YidD"]
["scaffold4|size376322","fig|6666666.156949.peg.3787","peg","scaffold4|size376322_341497_340934",341497,340934,"-","Carbonic anhydrase (EC 4.2.1.1)","FIG00023019","idu(2);Zinc_regulated_enzymes"]
["scaffold4|size376322","fig|6666666.156949.peg.3788","peg","scaffold4|size376322_341839_341591",341839,341591,"-","LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent","FIG00000092","idu(1);Ribosome_LSU_bacterial isu;Ribosome_LSU_bacterial"]
["scaffold4|size376322","fig|6666666.156949.peg.3789","peg","scaffold4|size376322_342045_343376",342045,343376,"+","Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)","FIG00096593","idu(1);Terminal_cytochrome_d_ubiquinol_oxidases idu(1);Terminal_cytochrome_oxidases"]
["scaffold4|size376322","fig|6666666.156949.peg.3790","peg","scaffold4|size376322_343420_344460",343420,344460,"+","Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)","FIG00000390","idu(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase icw(1);Terminal_cytochrome_d_ubiquinol_oxidases icw(1);Terminal_cytochrome_oxidases"]
["scaffold4|size376322","fig|6666666.156949.peg.3791","peg","scaffold4|size376322_344514_344672",344514,344672,"+","FIG01227655: hypothetical protein","FIG01227654","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3792","peg","scaffold4|size376322_345578_344691",345578,344691,"-","Manganese ABC transporter, inner membrane permease protein SitD","FIG01046910","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3793","peg","scaffold4|size376322_346875_345568",346875,345568,"-","Manganese ABC transporter, inner membrane permease protein SitC","FIG00905727","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3794","peg","scaffold4|size376322_347633_346881",347633,346881,"-","Manganese ABC transporter, ATP-binding protein SitB","FIG01322879","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3795","peg","scaffold4|size376322_348572_347652",348572,347652,"-","Manganese ABC transporter, periplasmic-binding protein SitA","FIG00627311","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3796","peg","scaffold4|size376322_349967_348852",349967,348852,"-","O-succinylbenzoate synthase (EC 4.2.1.113)","FIG01306622","isu;Muconate_lactonizing_enzyme_family icw(4);Menaquinone_and_Phylloquinone_Biosynthesis icw(4);Menaquinone_and_Phylloquinone_Biosynthesis_--_gjo"]
["scaffold4|size376322","fig|6666666.156949.peg.3797","peg","scaffold4|size376322_351424_349964",351424,349964,"-","O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)","FIG00000860","icw(4);Menaquinone_and_Phylloquinone_Biosynthesis icw(4);Menaquinone_and_Phylloquinone_Biosynthesis_--_gjo"]
["scaffold4|size376322","fig|6666666.156949.peg.3798","peg","scaffold4|size376322_352330_351515",352330,351515,"-","Naphthoate synthase (EC 4.1.3.36)","FIG00071623","isu;Menaquinone_and_Phylloquinone_Biosynthesis isu;Menaquinone_and_Phylloquinone_Biosynthesis_--_gjo"]
["scaffold4|size376322","fig|6666666.156949.peg.3799","peg","scaffold4|size376322_353144_352365",353144,352365,"-","2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)","FIG00016466","icw(2);Menaquinone_and_Phylloquinone_Biosynthesis icw(2);Menaquinone_and_Phylloquinone_Biosynthesis_--_gjo"]
["scaffold4|size376322","fig|6666666.156949.peg.3800","peg","scaffold4|size376322_354919_353177",354919,353177,"-","2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)","FIG00000866","icw(3);Menaquinone_and_Phylloquinone_Biosynthesis icw(3);Menaquinone_and_Phylloquinone_Biosynthesis_--_gjo isu;Ubiquinone_Biosynthesis_in_Eucarya"]
["scaffold4|size376322","fig|6666666.156949.peg.3801","peg","scaffold4|size376322_356376_354916",356376,354916,"-","Menaquinone-specific isochorismate synthase (EC 5.4.4.2)","FIG00134749","icw(1);Menaquinone_and_Phylloquinone_Biosynthesis icw(1);Menaquinone_and_Phylloquinone_Biosynthesis_--_gjo"]
["scaffold4|size376322","fig|6666666.156949.peg.3802","peg","scaffold4|size376322_356621_357340",356621,357340,"+","DNA binding protein, DksA/TraR family","FIG01225422","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3803","peg","scaffold4|size376322_358167_357349",358167,357349,"-","UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)","FIG00000108","idu(2);Ribosome_post-transcriptional_modification_and_chromosomal_segregation_cluster"]
["scaffold4|size376322","fig|6666666.156949.peg.3804","peg","scaffold4|size376322_358339_359625",358339,359625,"+","UDP-glucose dehydrogenase (EC 1.1.1.22)","FIG00000532","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3805","peg","scaffold4|size376322_359622_360572",359622,360572,"+","UDP-glucose 4-epimerase (EC 5.1.3.2)","FIG00022300","idu(3);Rhamnose_containing_glycans idu(3);Lactose_and_Galactose_Uptake_and_Utilization idu(3);N-linked_Glycosylation_in_Bacteria idu(3);Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway"]
["scaffold4|size376322","fig|6666666.156949.peg.3806","peg","scaffold4|size376322_360575_361798",360575,361798,"+","Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56)","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3807","peg","scaffold4|size376322_362306_361872",362306,361872,"-","alternate gene name: ytbB","FIG01316610","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3808","peg","scaffold4|size376322_363363_362308",363363,362308,"-","Spore coat protein S","FIG00012565","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3809","peg","scaffold4|size376322_364511_363378",364511,363378,"-","Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56)","FIG01955918","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3810","peg","scaffold4|size376322_364713_365774",364713,365774,"+","Spore coat protein S","FIG00012565","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3811","peg","scaffold4|size376322_365867_366334",365867,366334,"+","TspO/MBR family protein","FIG01320438","NA"]
["scaffold4|size376322","fig|6666666.156949.peg.3812","peg","scaffold4|size376322_368761_366365",368761,366365,"-","Glycogen phosphorylase (EC 2.4.1.1)","FIG00000476","icw(1);Glycogen_metabolism_cluster icw(2);Glycogen_metabolism isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold4|size376322","fig|6666666.156949.peg.3813","peg","scaffold4|size376322_370202_368748",370202,368748,"-","Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)","FIG00134135","icw(3);Glycogen_metabolism_cluster icw(4);Glycogen_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3814","peg","scaffold4|size376322_371230_370199",371230,370199,"-","Glycogen biosynthesis protein GlgD, glucose-1-phosphate adenylyltransferase family","FIG00002944","icw(2);Glycogen_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3815","peg","scaffold4|size376322_372396_371254",372396,371254,"-","Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)","FIG00000717","isu;Glycogen_metabolism_cluster isu;Glycogen_metabolism"]
["scaffold4|size376322","fig|6666666.156949.peg.3816","peg","scaffold4|size376322_374276_372393",374276,372393,"-","1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)","FIG00024930","isu;Trehalose_Biosynthesis icw(1);Glycogen_metabolism_cluster icw(1);Glycogen_metabolism"]
["scaffold4|size376322","fig|6666666.156949.rna.76","rna","scaffold4|size376322_374579_374508",374579,374508,"-","tRNA-Glu-TTC","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.77","rna","scaffold4|size376322_374695_374608",374695,374608,"-","tRNA-Ser-GCT","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.78","rna","scaffold4|size376322_374773_374702",374773,374702,"-","tRNA-Asn-GTT","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.79","rna","scaffold4|size376322_374860_374787",374860,374787,"-","tRNA-Ile-GAT","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.80","rna","scaffold4|size376322_374949_374879",374949,374879,"-","tRNA-Gly-TCC","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.81","rna","scaffold4|size376322_375035_374963",375035,374963,"-","tRNA-His-GTG","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.82","rna","scaffold4|size376322_375128_375056",375128,375056,"-","tRNA-Phe-GAA","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.83","rna","scaffold4|size376322_375217_375144",375217,375144,"-","tRNA-Asp-GTC","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.84","rna","scaffold4|size376322_375305_375232",375305,375232,"-","tRNA-Met-CAT","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.85","rna","scaffold4|size376322_375415_375326",375415,375326,"-","tRNA-Ser-TGA","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.86","rna","scaffold4|size376322_375498_375425",375498,375425,"-","tRNA-Met-CAT","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.87","rna","scaffold4|size376322_375577_375504",375577,375504,"-","tRNA-Met-CAT","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.88","rna","scaffold4|size376322_375670_375598",375670,375598,"-","tRNA-Ala-TGC","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.89","rna","scaffold4|size376322_375752_375679",375752,375679,"-","tRNA-Pro-TGG","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.90","rna","scaffold4|size376322_375844_375771",375844,375771,"-","tRNA-Arg-ACG","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.91","rna","scaffold4|size376322_375939_375854",375939,375854,"-","tRNA-Leu-TAA","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.92","rna","scaffold4|size376322_376028_375957",376028,375957,"-","tRNA-Gly-GCC","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.93","rna","scaffold4|size376322_376120_376037",376120,376037,"-","tRNA-Leu-CAG","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.94","rna","scaffold4|size376322_376206_376134",376206,376134,"-","tRNA-Lys-TTT","NA","NA"]
["scaffold4|size376322","fig|6666666.156949.rna.95","rna","scaffold4|size376322_376319_376247",376319,376247,"-","tRNA-Thr-TGT","NA","NA"]
["scaffold504|size506","fig|6666666.156949.peg.3817","peg","scaffold504|size506_31_411",31,411,"+","hypothetical protein","NA","NA"]
["scaffold509|size505","fig|6666666.156949.peg.3818","peg","scaffold509|size505_66_191",66,191,"+","hypothetical protein","NA","NA"]
["scaffold50|size1178","fig|6666666.156949.rna.96","rna","scaffold50|size1178_1_379",1,379,"+","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold511|size504","fig|6666666.156949.peg.3819","peg","scaffold511|size504_373_194",373,194,"-","hypothetical protein","NA","NA"]
["scaffold512|size504","fig|6666666.156949.peg.3820","peg","scaffold512|size504_487_191",487,191,"-","hypothetical protein","NA","NA"]
["scaffold515|size503","fig|6666666.156949.peg.3821","peg","scaffold515|size503_314_445",314,445,"+","hypothetical protein","NA","NA"]
["scaffold524|size500","fig|6666666.156949.peg.3822","peg","scaffold524|size500_443_252",443,252,"-","Ferric iron ABC transporter, permease protein","FIG00006997","isu;Campylobacter_Iron_Metabolism"]
["scaffold527|size500","fig|6666666.156949.peg.3823","peg","scaffold527|size500_452_171",452,171,"-","Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily","FIG00001036","NA"]
["scaffold52|size1176","fig|6666666.156949.peg.3824","peg","scaffold52|size1176_251_367",251,367,"+","hypothetical protein","NA","NA"]
["scaffold52|size1176","fig|6666666.156949.peg.3825","peg","scaffold52|size1176_755_636",755,636,"-","hypothetical protein","NA","NA"]
["scaffold53|size1175","fig|6666666.156949.peg.3826","peg","scaffold53|size1175_440_327",440,327,"-","hypothetical protein","NA","NA"]
["scaffold54|size1173","fig|6666666.156949.peg.3827","peg","scaffold54|size1173_1091_378",1091,378,"-","hypothetical protein","NA","NA"]
["scaffold59|size1087","fig|6666666.156949.peg.3828","peg","scaffold59|size1087_300_482",300,482,"+","hypothetical protein","NA","NA"]
["scaffold59|size1087","fig|6666666.156949.peg.3829","peg","scaffold59|size1087_469_921",469,921,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.rna.97","rna","scaffold5|size289205_6_121",6,121,"+","5S RNA","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.rna.98","rna","scaffold5|size289205_136_209",136,209,"+","tRNA-Met-CAT","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.rna.99","rna","scaffold5|size289205_273_346",273,346,"+","tRNA-Asp-GTC","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3830","peg","scaffold5|size289205_530_1507",530,1507,"+","Thiamine-monophosphate kinase (EC 2.7.4.16)","FIG00000570","isu;5-FCL-like_protein isu;Riboflavin_synthesis_cluster isu;Thiamin_biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3831","peg","scaffold5|size289205_1522_1998",1522,1998,"+","TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA","FIG00000228","isu;Scaffold_proteins_for_[4Fe-4S]_cluster_assembly_(MRP_family) icw(1);YjeE"]
["scaffold5|size289205","fig|6666666.156949.peg.3832","peg","scaffold5|size289205_1979_2668",1979,2668,"+","TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA","FIG00000247","isu;Bacterial_RNA-metabolizing_Zn-dependent_hydrolases icw(1);YgjD_and_YeaZ isu;Ribosome_biogenesis_bacterial isu;YjeE icw(1);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold5|size289205","fig|6666666.156949.peg.3833","peg","scaffold5|size289205_2678_3133",2678,3133,"+","Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)","FIG00122145","icw(2);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases icw(1);Ribosome_biogenesis_bacterial isu;Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold5|size289205","fig|6666666.156949.peg.3834","peg","scaffold5|size289205_3126_4166",3126,4166,"+","TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA","FIG00134348","icw(1);Bacterial_RNA-metabolizing_Zn-dependent_hydrolases idu(1);YgjD_and_YeaZ idu(1);Macromolecular_synthesis_operon icw(2);Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase"]
["scaffold5|size289205","fig|6666666.156949.peg.3835","peg","scaffold5|size289205_6325_4397",6325,4397,"-","ABC transporter ATP-binding protein uup","FIG00007941","isu;CBSS-393121.3.peg.2760"]
["scaffold5|size289205","fig|6666666.156949.peg.3836","peg","scaffold5|size289205_6451_6963",6451,6963,"+","Molybdenum cofactor biosynthesis protein MoaC","FIG00053487","isu;ar-104-EC_Molybdenum_cofactor_biosynthesis_moaABCDE isu;Molybdenum_cofactor_biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3837","peg","scaffold5|size289205_6960_7607",6960,7607,"+","Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)","FIG00001237","isu;Oxidative_stress"]
["scaffold5|size289205","fig|6666666.156949.peg.3838","peg","scaffold5|size289205_7628_7801",7628,7801,"+","Twin-arginine translocation protein TatA","FIG00138313","icw(1);Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related icw(1);Twin-arginine_translocation_system"]
["scaffold5|size289205","fig|6666666.156949.peg.3839","peg","scaffold5|size289205_7817_8572",7817,8572,"+","Twin-arginine translocation protein TatC","FIG00000335","idu(2);Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related idu(2);Twin-arginine_translocation_system"]
["scaffold5|size289205","fig|6666666.156949.peg.3840","peg","scaffold5|size289205_8801_8610",8801,8610,"-","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3841","peg","scaffold5|size289205_9532_8798",9532,8798,"-","CAAX amino terminal protease family protein","FIG00745068","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3842","peg","scaffold5|size289205_9771_10055",9771,10055,"+","Heat shock protein 60 family co-chaperone GroES","FIG00009229","isu;GroEL_GroES"]
["scaffold5|size289205","fig|6666666.156949.peg.3843","peg","scaffold5|size289205_10102_11733",10102,11733,"+","Heat shock protein 60 family chaperone GroEL","FIG00000056","isu;Staphylococcal_pathogenicity_islands_SaPI icw(1);GroEL_GroES"]
["scaffold5|size289205","fig|6666666.156949.peg.3844","peg","scaffold5|size289205_12343_12230",12343,12230,"-","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3845","peg","scaffold5|size289205_12436_13431",12436,13431,"+","FIG01247894: hypothetical protein","FIG01843005","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3846","peg","scaffold5|size289205_16004_13515",16004,13515,"-","FIG01225907: hypothetical protein","FIG01225905","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3847","peg","scaffold5|size289205_16134_17267",16134,17267,"+","Sorbitol dehydrogenase (EC 1.1.1.14)","FIG00453259","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3848","peg","scaffold5|size289205_17341_18732",17341,18732,"+","Glucitol/sorbitol-specific transport protein GutA","FIG01305709","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3849","peg","scaffold5|size289205_18863_19789",18863,19789,"+","Fructokinase (EC 2.7.1.4)","FIG00001653","idu(1);Sucrose_utilization idu(1);Fructose_utilization idu(1);Mannitol_Utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3850","peg","scaffold5|size289205_19985_20668",19985,20668,"+","Phage shock protein A","FIG00006853","isu;Phage_shock_protein_(psp)_operon"]
["scaffold5|size289205","fig|6666666.156949.peg.3851","peg","scaffold5|size289205_20773_21759",20773,21759,"+","Primosomal protein N' (replication factor Y) - superfamily II helicase","FIG00628339","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3852","peg","scaffold5|size289205_21759_22523",21759,22523,"+","unknown","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3853","peg","scaffold5|size289205_22554_23525",22554,23525,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3854","peg","scaffold5|size289205_24597_23572",24597,23572,"-","Uncharacterized membrane protein YdjJ","FIG01242137","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3855","peg","scaffold5|size289205_24929_25072",24929,25072,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3856","peg","scaffold5|size289205_25181_26602",25181,26602,"+","Major myo-inositol transporter IolT","FIG00080381","idu(4);Inositol_catabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.3857","peg","scaffold5|size289205_27690_26650",27690,26650,"-","2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific (EC 1.1.1.4)","FIG00035092","isu;Acetoin,_butanediol_metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.3858","peg","scaffold5|size289205_28128_28499",28128,28499,"+","YdjM","FIG01232863","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3859","peg","scaffold5|size289205_28565_29611",28565,29611,"+","YdjN","FIG01248288","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3860","peg","scaffold5|size289205_29803_29645",29803,29645,"-","ydzJ","FIG01235221","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3861","peg","scaffold5|size289205_30202_29993",30202,29993,"-","YdjO","FIG01237632","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3862","peg","scaffold5|size289205_31100_30285",31100,30285,"-","Non-heme chloroperoxidase (EC 1.11.1.10)","FIG01225742","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3863","peg","scaffold5|size289205_32162_31113",32162,31113,"-","conserved protein YeaA","FIG01226527","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3864","peg","scaffold5|size289205_33742_32201",33742,32201,"-","Spore coat protein A","FIG00181893","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3865","peg","scaffold5|size289205_35303_33894",35303,33894,"-","gamma-aminobutyrate (GABA) permease","FIG00731633","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3866","peg","scaffold5|size289205_35702_36574",35702,36574,"+","YeaB (Cation efflux protein)","FIG01226819","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3867","peg","scaffold5|size289205_36725_37687",36725,37687,"+","FIG022979: MoxR-like ATPases","FIG00006676","isu;CBSS-1140.3.peg.2017"]
["scaffold5|size289205","fig|6666666.156949.peg.3868","peg","scaffold5|size289205_37687_38883",37687,38883,"+","FIG002343: hypothetical protein","FIG00002343","icw(1);CBSS-1140.3.peg.2017"]
["scaffold5|size289205","fig|6666666.156949.peg.3869","peg","scaffold5|size289205_38905_41118",38905,41118,"+","FIG001454: Transglutaminase-like enzymes, putative cysteine proteases","FIG00001454","icw(2);CBSS-1140.3.peg.2017"]
["scaffold5|size289205","fig|6666666.156949.peg.3870","peg","scaffold5|size289205_41271_42821",41271,42821,"+","GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)","NA","isu;Purine_conversions isu;Staphylococcal_pathogenicity_islands_SaPI"]
["scaffold5|size289205","fig|6666666.156949.peg.3871","peg","scaffold5|size289205_42929_43462",42929,43462,"+","RNA polymerase sigma factor SigV","FIG00099318","idu(1);Transcription_initiation,_bacterial_sigma_factors"]
["scaffold5|size289205","fig|6666666.156949.peg.3872","peg","scaffold5|size289205_43444_44904",43444,44904,"+","FIG01236409: hypothetical protein","FIG01236408","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3873","peg","scaffold5|size289205_45294_46616",45294,46616,"+","Hypoxanthine/guanine permease PbuG","FIG01304502","isu;Xanthine_Metabolism_in_Bacteria"]
["scaffold5|size289205","fig|6666666.156949.peg.3874","peg","scaffold5|size289205_46827_47279,scaffold5|size289205_47279_47494,scaffold5|size289205_47496_47630",46827,47630,"+","YebC","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3875","peg","scaffold5|size289205_47582_47704",47582,47704,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3876","peg","scaffold5|size289205_47725_47955",47725,47955,"+","FIG01235682: hypothetical protein","FIG01235680","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3877","peg","scaffold5|size289205_48169_48723",48169,48723,"+","FIG00774849: hypothetical protein","FIG01225758","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3878","peg","scaffold5|size289205_48723_48920",48723,48920,"+","unknown","FIG01966938","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3879","peg","scaffold5|size289205_49243_49731",49243,49731,"+","Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)","FIG00000227","icw(4);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3880","peg","scaffold5|size289205_49724_50866",49724,50866,"+","Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)","FIG00000375","icw(5);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3881","peg","scaffold5|size289205_50863_52158",50863,52158,"+","Adenylosuccinate lyase (EC 4.3.2.2)","FIG00000117","isu;Purine_conversions icw(1);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3882","peg","scaffold5|size289205_52232_52957",52232,52957,"+","Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)","FIG00000195","isu;De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3883","peg","scaffold5|size289205_52950_53204",52950,53204,"+","Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3)","FIG00000869","icw(2);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3884","peg","scaffold5|size289205_53201_53884",53201,53884,"+","Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)","FIG00025475","icw(4);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3885","peg","scaffold5|size289205_53868_56096",53868,56096,"+","Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)","FIG01303876","icw(8);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3886","peg","scaffold5|size289205_56072_57502",56072,57502,"+","Amidophosphoribosyltransferase (EC 2.4.2.14)","FIG00000179","icw(5);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3887","peg","scaffold5|size289205_57604_58644",57604,58644,"+","Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)","FIG00000222","icw(1);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3888","peg","scaffold5|size289205_58641_59228",58641,59228,"+","Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)","FIG00000253","isu;5-FCL-like_protein isu;De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3889","peg","scaffold5|size289205_59225_60763",59225,60763,"+","IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)","FIG00000275","icw(1);5-FCL-like_protein icw(3);De_Novo_Purine_Biosynthesis icw(4);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3890","peg","scaffold5|size289205_60779_62047",60779,62047,"+","Phosphoribosylamine--glycine ligase (EC 6.3.4.13)","FIG00000235","icw(4);De_Novo_Purine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3891","peg","scaffold5|size289205_62506_62087",62506,62087,"-","Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system","FIG00003800","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(1);Branched-Chain_Amino_Acid_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3892","peg","scaffold5|size289205_62650_63924",62650,63924,"+","Amino acid permease family protein","FIG01331848","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3893","peg","scaffold5|size289205_64166_63939",64166,63939,"-","FIG01226624: hypothetical protein","FIG01226618","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3894","peg","scaffold5|size289205_64295_66037",64295,66037,"+","Adenine deaminase (EC 3.5.4.2)","FIG00001522","idu(1);Purine_conversions"]
["scaffold5|size289205","fig|6666666.156949.peg.3895","peg","scaffold5|size289205_66064_67059",66064,67059,"+","FIG00895120: hypothetical protein","FIG00895119","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3896","peg","scaffold5|size289205_67062_67376",67062,67376,"+","His repressor","FIG00003012","isu;CBSS-393121.3.peg.1913"]
["scaffold5|size289205","fig|6666666.156949.peg.3897","peg","scaffold5|size289205_68991_67414",68991,67414,"-","Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)","FIG01303823","isu;Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis isu;Ammonia_assimilation"]
["scaffold5|size289205","fig|6666666.156949.peg.3898","peg","scaffold5|size289205_69101_69232",69101,69232,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3899","peg","scaffold5|size289205_69257_69943",69257,69943,"+","(S)-3-O-geranylgeranylglyceryl phosphate synthase","FIG00007578","icw(3);CBSS-393121.3.peg.1913"]
["scaffold5|size289205","fig|6666666.156949.peg.3900","peg","scaffold5|size289205_70005_72224",70005,72224,"+","ATP-dependent DNA helicase UvrD/PcrA","FIG00000372","isu;DNA_repair,_bacterial_UvrD_and_related_helicases icw(2);CBSS-393121.3.peg.1913"]
["scaffold5|size289205","fig|6666666.156949.peg.3901","peg","scaffold5|size289205_72248_74254",72248,74254,"+","DNA ligase (EC 6.5.1.2)","FIG00051439","isu;DNA_Repair_Base_Excision isu;CBSS-393121.3.peg.1913"]
["scaffold5|size289205","fig|6666666.156949.peg.3902","peg","scaffold5|size289205_74270_75460",74270,75460,"+","Putative pheromone cAM373 precursor lipoprotein CamS","FIG00008077","isu;Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes"]
["scaffold5|size289205","fig|6666666.156949.peg.3903","peg","scaffold5|size289205_75631_76632",75631,76632,"+","Homoserine kinase (EC 2.7.1.39)","FIG00000582","idu(1);CBSS-269482.1.peg.1294 idu(1);Threonine_and_Homoserine_Biosynthesis idu(1);Methionine_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3904","peg","scaffold5|size289205_77362_76670",77362,76670,"-","Mg(2+) transport ATPase protein C","NA","isu;Magnesium_transport"]
["scaffold5|size289205","fig|6666666.156949.peg.3905","peg","scaffold5|size289205_78953_77475",78953,77475,"-","Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter","FIG00034981","isu;Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3906","peg","scaffold5|size289205_79367_79657",79367,79657,"+","Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)","FIG00000432","icw(2);tRNA_aminoacylation,_Glu_and_Gln isu;tRNA_aminoacylation,_Asp_and_Asn"]
["scaffold5|size289205","fig|6666666.156949.peg.3907","peg","scaffold5|size289205_79673_81130",79673,81130,"+","Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)","FIG00000359","isu;tRNA_aminoacylation,_Glu_and_Gln icw(2);tRNA_aminoacylation,_Asp_and_Asn"]
["scaffold5|size289205","fig|6666666.156949.peg.3908","peg","scaffold5|size289205_81144_82574",81144,82574,"+","Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)","FIG00000399","icw(1);tRNA_aminoacylation,_Glu_and_Gln icw(1);tRNA_aminoacylation,_Asp_and_Asn"]
["scaffold5|size289205","fig|6666666.156949.peg.3909","peg","scaffold5|size289205_83459_82611",83459,82611,"-","TetR family transcriptional regulator probably coupled to RND multidrug efflux transporter","FIG01340973","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3910","peg","scaffold5|size289205_83591_86749",83591,86749,"+","Swarming motility protein SwrC","FIG01304839","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3911","peg","scaffold5|size289205_86902_87813",86902,87813,"+","Transcription regulator [contains diacylglycerol kinase catalytic domain]","FIG00001646","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3912","peg","scaffold5|size289205_88123_89502",88123,89502,"+","RNA methyltransferase, TrmA family","FIG00004538","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3913","peg","scaffold5|size289205_89598_90764",89598,90764,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3914","peg","scaffold5|size289205_93626_91635,scaffold5|size289205_91633_91142",93626,91142,"-","Putative toxin component near putative ESAT-related proteins, repetitive / Repetitive hypothetical protein near ESAT cluster, SA0282 homolog","FIG00149320","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3915","peg","scaffold5|size289205_93839_94855",93839,94855,"+","FIG01245416: hypothetical protein","FIG01459059","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3916","peg","scaffold5|size289205_94983_95840",94983,95840,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3917","peg","scaffold5|size289205_96005_97129,scaffold5|size289205_97131_97298",96005,97298,"+","response regulator aspartate phosphatase","FIG01228496","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3918","peg","scaffold5|size289205_97456_98175",97456,98175,"+","FIG007491: hypothetical protein YeeN","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3919","peg","scaffold5|size289205_98309_98737",98309,98737,"+","Nickel transporter UreH","NA","isu;Urea_decomposition"]
["scaffold5|size289205","fig|6666666.156949.peg.3920","peg","scaffold5|size289205_98851_99435",98851,99435,"+","Transcriptional regulator, TetR family","FIG01964837","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3921","peg","scaffold5|size289205_99515_99958",99515,99958,"+","FIG01234583: hypothetical protein","FIG01234579","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3922","peg","scaffold5|size289205_99955_100803",99955,100803,"+","FIG01239983: hypothetical protein","FIG01239979","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3923","peg","scaffold5|size289205_100950_101198",100950,101198,"+","Polypeptide composition of the spore coat; required for the assembly of CotJC","FIG01227950","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3924","peg","scaffold5|size289205_101182_101445",101182,101445,"+","Polypeptide composition of the spore coat protein CotJB","FIG00009072","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3925","peg","scaffold5|size289205_101460_102029",101460,102029,"+","Polypeptide composition of the spore coat protein CotJC","FIG00008894","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3926","peg","scaffold5|size289205_102154_102696",102154,102696,"+","acetyltransferase, GNAT family","FIG01315364","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3927","peg","scaffold5|size289205_102719_103021",102719,103021,"+","FIG01250918: hypothetical protein","FIG01250917","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3928","peg","scaffold5|size289205_103136_103765",103136,103765,"+","YESL protein","FIG01340904","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3929","peg","scaffold5|size289205_103762_105495",103762,105495,"+","two-component sensor histidine kinase","FIG00516172","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3930","peg","scaffold5|size289205_105495_106601",105495,106601,"+","DNA-binding response regulator, AraC family","FIG01114793","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3931","peg","scaffold5|size289205_106705_107988",106705,107988,"+","Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component","FIG00054694","icw(3);L-rhamnose_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3932","peg","scaffold5|size289205_108009_108914",108009,108914,"+","Predicted rhamnose oligosaccharide ABC transport system, permease component 2","FIG00052867","icw(2);L-rhamnose_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3933","peg","scaffold5|size289205_108918_109808",108918,109808,"+","Predicted rhamnose oligosaccharide ABC transport system, permease component","FIG00059266","icw(1);L-rhamnose_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3934","peg","scaffold5|size289205_109824_110858",109824,110858,"+","Rhamnogalacturonides degradation protein RhiN","FIG00006764","idu(1);D-Galacturonate_and_D-Glucuronate_Utilization icw(2);L-rhamnose_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3935","peg","scaffold5|size289205_110881_113166",110881,113166,"+","DNA-binding response regulator, AraC family","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3936","peg","scaffold5|size289205_113183_113878",113183,113878,"+","rhamnogalacturonan acetylesterase","FIG00016888","idu(2);L-rhamnose_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3937","peg","scaffold5|size289205_113871_114533",113871,114533,"+","unknown","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3938","peg","scaffold5|size289205_114530_115156",114530,115156,"+","YESV protein","FIG01417307","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3939","peg","scaffold5|size289205_115295_117139",115295,117139,"+","Predicted rhamnogalacturonan lyase in rhamnose utilization cluster","FIG00135546","icw(2);L-rhamnose_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3940","peg","scaffold5|size289205_117206_119023",117206,119023,"+","Predicted rhamnogalacturonan lyase in rhamnose utilization cluster","FIG00135546","icw(2);L-rhamnose_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3941","peg","scaffold5|size289205_119188_119838,scaffold5|size289205_119842_119898",119188,119898,"+","rhamnogalacturonan acetylesterase","FIG00016888","idu(2);L-rhamnose_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3942","peg","scaffold5|size289205_119849_121840",119849,121840,"+","Beta-galactosidase (EC 3.2.1.23)","FIG00001548","idu(1);Lactose_and_Galactose_Uptake_and_Utilization idu(1);Galactosylceramide_and_Sulfatide_metabolism idu(1);Lactose_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3943","peg","scaffold5|size289205_121884_124457",121884,124457,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3944","peg","scaffold5|size289205_124579_126087",124579,126087,"+","Lipoprotein lplA precursor","FIG01233333","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3945","peg","scaffold5|size289205_126142_127098",126142,127098,"+","ABC-type polysaccharide transport system, permease component","FIG01116001","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3946","peg","scaffold5|size289205_127112_127999",127112,127999,"+","Probable ABC transporter permease protein ytcP","FIG00627572","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3947","peg","scaffold5|size289205_128008_129348",128008,129348,"+","Alpha-galactosidase (EC 3.2.1.22)","FIG00002020","idu(1);Melibiose_Utilization idu(1);Fructooligosaccharides(FOS)_and_Raffinose_Utilization idu(1);Lactose_and_Galactose_Uptake_and_Utilization idu(1);Galactosylceramide_and_Sulfatide_metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.3948","peg","scaffold5|size289205_129423_130118",129423,130118,"+","FIG01229608: hypothetical protein","FIG01229606","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3949","peg","scaffold5|size289205_130481_130155",130481,130155,"-","Antibiotic biosynthesis monooxygenase domain-containing protein","FIG00011646","isu;Heme,_hemin_uptake_and_utilization_systems_in_GramPositives isu;Siderophore_Anthrachelin"]
["scaffold5|size289205","fig|6666666.156949.peg.3950","peg","scaffold5|size289205_130947_130585",130947,130585,"-","Glyoxalase family protein","FIG00007915","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3951","peg","scaffold5|size289205_131581_131039",131581,131039,"-","FIG01229847: hypothetical protein","FIG01391858","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3952","peg","scaffold5|size289205_131779_132651",131779,132651,"+","RsbR, positive regulator of sigma-B","FIG00001285","idu(5);SigmaB_stress_responce_regulation"]
["scaffold5|size289205","fig|6666666.156949.peg.3953","peg","scaffold5|size289205_132806_132973",132806,132973,"+","FIG01226699: hypothetical protein","FIG01226698","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3954","peg","scaffold5|size289205_133083_133727",133083,133727,"+","FIG01231219: hypothetical protein","FIG01231218","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3955","peg","scaffold5|size289205_133727_134719",133727,134719,"+","FIG01243460: hypothetical protein","FIG01243459","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3956","peg","scaffold5|size289205_135246_134743",135246,134743,"-","Transcriptional regulator YetL, MarR family","FIG01228268","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3957","peg","scaffold5|size289205_135409_136518",135409,136518,"+","Salicylate hydroxylase (EC 1.14.13.1)","FIG00001735","isu;Salicylate_ester_degradation isu;Salicylate_and_gentisate_catabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.3958","peg","scaffold5|size289205_138193_137123",138193,137123,"-","FIG01230544: hypothetical protein","FIG01230543","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3959","peg","scaffold5|size289205_138343_141528",138343,141528,"+","Probable bifunctional P-450/NADPH-P450 reductase CypD","FIG01317651","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3960","peg","scaffold5|size289205_141799_141662",141799,141662,"-","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3961","peg","scaffold5|size289205_141933_143894",141933,143894,"+","Lipoteichoic acid synthase LtaS Type Ib","FIG00009212","isu;Polyglycerolphosphate_lipoteichoic_acid_biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3962","peg","scaffold5|size289205_143896_144072",143896,144072,"+","FIG01246720: hypothetical protein","FIG01246719","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3963","peg","scaffold5|size289205_144131_144895",144131,144895,"+","Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33)","FIG00132976","isu;dTDP-rhamnose_synthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.3964","peg","scaffold5|size289205_144968_145870",144968,145870,"+","UDP-glucose 4-epimerase (EC 5.1.3.2)","FIG00022300","idu(3);Rhamnose_containing_glycans idu(3);Lactose_and_Galactose_Uptake_and_Utilization idu(3);N-linked_Glycosylation_in_Bacteria idu(3);Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway"]
["scaffold5|size289205","fig|6666666.156949.peg.3965","peg","scaffold5|size289205_145894_146805",145894,146805,"+","FIG01230895: hypothetical protein","FIG01230894","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3966","peg","scaffold5|size289205_146834_148012",146834,148012,"+","FIG01233663: hypothetical protein","FIG01233662","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3967","peg","scaffold5|size289205_148073_148948",148073,148948,"+","FIG01226311: hypothetical protein","FIG01226310","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3968","peg","scaffold5|size289205_150207_148978",150207,148978,"-","fosmidomycin resistance protein","FIG01316843","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3969","peg","scaffold5|size289205_151026_150319",151026,150319,"-","5'-nucleotidase YjjG (EC 3.1.3.5)","FIG00004502","isu;Housecleaning_nucleoside_triphosphate_pyrophosphatases"]
["scaffold5|size289205","fig|6666666.156949.peg.3970","peg","scaffold5|size289205_152503_151118",152503,151118,"-","Amino acid permease","FIG01345058","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3971","peg","scaffold5|size289205_152753_154210",152753,154210,"+","Aldehyde dehydrogenase (EC 1.2.1.3)","FIG01292786","idu(4);Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate idu(4);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(4);Methylglyoxal_Metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.3972","peg","scaffold5|size289205_154224_155084",154224,155084,"+","Methyl-accepting chemotaxis protein","FIG01954797","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3973","peg","scaffold5|size289205_155218_157107",155218,157107,"+","COG0488: ATPase components of ABC transporters with duplicated ATPase domains","FIG00005836","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3974","peg","scaffold5|size289205_157230_157676",157230,157676,"+","Holin associated hypothetical protein","FIG00013232","isu;Murein_hydrolase_regulation_and_cell_death"]
["scaffold5|size289205","fig|6666666.156949.peg.3975","peg","scaffold5|size289205_157801_158223",157801,158223,"+","HTH-type transcriptional regulator yfmP","FIG01390362","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3976","peg","scaffold5|size289205_158289_159479",158289,159479,"+","L-Proline/Glycine betaine transporter ProP","FIG00061305","idu(4);Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3977","peg","scaffold5|size289205_160289_161185",160289,161185,"+","serine alkaline protease (subtilisin E)","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3978","peg","scaffold5|size289205_161169_162095",161169,162095,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3979","peg","scaffold5|size289205_162438_162596",162438,162596,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3980","peg","scaffold5|size289205_162777_163217",162777,163217,"+","FIG01228911: hypothetical protein","FIG01475403","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3981","peg","scaffold5|size289205_164811_163255",164811,163255,"-","ABC transporter ATP-binding protein","FIG00450796","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3982","peg","scaffold5|size289205_164810_164974",164810,164974,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3983","peg","scaffold5|size289205_164986_166116",164986,166116,"+","ATP-dependent RNA helicase YfmL","FIG00008010","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3984","peg","scaffold5|size289205_166185_166631",166185,166631,"+","YfmK","FIG01237266","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3985","peg","scaffold5|size289205_167703_166684",167703,166684,"-","Putative oxidoreductase YncB","FIG00005027","isu;Broadly_distributed_proteins_not_in_subsystems isu;Quinone_oxidoreductase_family"]
["scaffold5|size289205","fig|6666666.156949.peg.3986","peg","scaffold5|size289205_167661_167822",167661,167822,"+","FIG01232866: hypothetical protein","FIG01767239","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3987","peg","scaffold5|size289205_168608_167808",168608,167808,"-","Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)","FIG01304275","idu(1);Heme,_hemin_uptake_and_utilization_systems_in_GramNegatives"]
["scaffold5|size289205","fig|6666666.156949.peg.3988","peg","scaffold5|size289205_169622_168621",169622,168621,"-","Heme ABC type transporter HtsABC, permease protein HtsC","FIG00009225","icw(2);Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"]
["scaffold5|size289205","fig|6666666.156949.peg.3989","peg","scaffold5|size289205_170620_169619",170620,169619,"-","Heme ABC type transporter HtsABC, permease protein HtsB","FIG00010397","isu;Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"]
["scaffold5|size289205","fig|6666666.156949.peg.3990","peg","scaffold5|size289205_171640_170693",171640,170693,"-","Heme ABC type transporter HtsABC, heme-binding protein","FIG00019092","icw(1);Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"]
["scaffold5|size289205","fig|6666666.156949.peg.3991","peg","scaffold5|size289205_172117_171749",172117,171749,"-","YfmB","FIG01226635","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3992","peg","scaffold5|size289205_172361_172708",172361,172708,"+","FIG01226121: hypothetical protein","FIG01226119","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3993","peg","scaffold5|size289205_172898_174160",172898,174160,"+","Pectate lyase precursor (EC 4.2.2.2)","FIG00905834","isu;D-Galacturonate_and_D-Glucuronate_Utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.3994","peg","scaffold5|size289205_174287_175723",174287,175723,"+","2-oxoglutarate/malate translocator","FIG00006417","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3995","peg","scaffold5|size289205_175851_177479",175851,177479,"+","Sensor kinase CitA, DpiB (EC 2.7.3.-)","FIG00001906","icw(2);Citrate_Metabolism,_Transport,_and_Regulation icw(1);CitAB"]
["scaffold5|size289205","fig|6666666.156949.peg.3996","peg","scaffold5|size289205_177451_178131",177451,178131,"+","Transcriptional regulatory protein CitB, DpiA","NA","isu;Citrate_Metabolism,_Transport,_and_Regulation isu;CitAB"]
["scaffold5|size289205","fig|6666666.156949.peg.3997","peg","scaffold5|size289205_178134_179093",178134,179093,"+","Tricarboxylate transport protein TctC","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3998","peg","scaffold5|size289205_179120_179245",179120,179245,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.3999","peg","scaffold5|size289205_179289_180590",179289,180590,"+","Mg(2+) Citrate transporter (TC 2.A.11.1.1)","FIG01954015","icw(1);Citrate_Metabolism,_Transport,_and_Regulation"]
["scaffold5|size289205","fig|6666666.156949.peg.4000","peg","scaffold5|size289205_180646_181440",180646,181440,"+","Metal-dependent hydrolase","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4001","peg","scaffold5|size289205_181559_182650",181559,182650,"+","Nitric oxide synthase oxygenase (EC 1.-.-.-)","FIG00003287","isu;Nitric_oxide_synthase"]
["scaffold5|size289205","fig|6666666.156949.peg.4002","peg","scaffold5|size289205_182916_182641",182916,182641,"-","Acylphosphate phosphohydrolase (EC 3.6.1.7), putative","FIG00614545","isu;Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"]
["scaffold5|size289205","fig|6666666.156949.peg.4003","peg","scaffold5|size289205_182983_183648",182983,183648,"+","Uncharacterized protein conserved in bacteria","FIG01311050","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4004","peg","scaffold5|size289205_183826_183689",183826,183689,"-","unknown","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4005","peg","scaffold5|size289205_184138_183983",184138,183983,"-","FIG01231981: hypothetical protein","FIG01231980","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4006","peg","scaffold5|size289205_184559_184245",184559,184245,"-","FIG01242431: hypothetical protein","FIG01242424","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4007","peg","scaffold5|size289205_185390_184641",185390,184641,"-","Methionine aminopeptidase (EC 3.4.11.18)","FIG00000036","idu(1);CBSS-312309.3.peg.1965 idu(1);Translation_termination_factors_bacterial"]
["scaffold5|size289205","fig|6666666.156949.peg.4008","peg","scaffold5|size289205_185562_186920",185562,186920,"+","PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)","NA","isu;Chitin_and_N-acetylglucosamine_utilization isu;Chitin_and_N-acetylglucosamine_utilization isu;Sialic_Acid_Metabolism isu;Sialic_Acid_Metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.4009","peg","scaffold5|size289205_188903_186954",188903,186954,"-","Lipoteichoic acid synthase LtaS Type Ia","FIG00008266","isu;Polyglycerolphosphate_lipoteichoic_acid_biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.4010","peg","scaffold5|size289205_189160_189552",189160,189552,"+","FIG01230294: hypothetical protein","FIG01230293","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4011","peg","scaffold5|size289205_189761_191092",189761,191092,"+","Na(+)-linked D-alanine glycine permease","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4012","peg","scaffold5|size289205_192165_191089",192165,191089,"-","FIG01231462: hypothetical protein","FIG01231460","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4013","peg","scaffold5|size289205_192389_192189",192389,192189,"-","Uncharacterized protein yfkS","FIG01243724","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4014","peg","scaffold5|size289205_193559_192405",193559,192405,"-","Spore germination protein GerKC","FIG00016382","icw(1);Spore_germination"]
["scaffold5|size289205","fig|6666666.156949.peg.4015","peg","scaffold5|size289205_195081_193540",195081,193540,"-","Spore germination protein GerKA","FIG00002489","idu(2);Spore_germination"]
["scaffold5|size289205","fig|6666666.156949.peg.4016","peg","scaffold5|size289205_195270_196682",195270,196682,"+","PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)","FIG00097000","icw(1);Trehalose_Uptake_and_Utilization icw(2);Trehalose_Uptake_and_Utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.4017","peg","scaffold5|size289205_196753_198438",196753,198438,"+","Trehalose-6-phosphate hydrolase (EC 3.2.1.93)","FIG00033893","icw(2);Trehalose_Uptake_and_Utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.4018","peg","scaffold5|size289205_198459_199175",198459,199175,"+","Trehalose operon transcriptional repressor","FIG01259203","isu;Trehalose_Uptake_and_Utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.4019","peg","scaffold5|size289205_199147_199269",199147,199269,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4020","peg","scaffold5|size289205_199315_199980",199315,199980,"+","Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34)","FIG00731724","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4021","peg","scaffold5|size289205_204264_200017",204264,200017,"-","2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) / 5'-nucleotidase (EC 3.1.3.5)","FIG00031898","isu;Purine_conversions isu;Purine_conversions idu(1);pyrimidine_conversions isu;pyrimidine_conversions"]
["scaffold5|size289205","fig|6666666.156949.peg.4022","peg","scaffold5|size289205_204648_205166",204648,205166,"+","ThiJ/PfpI family protein","FIG00015923","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4023","peg","scaffold5|size289205_206396_205206",206396,205206,"-","putative MFS family transport protein","FIG01232273","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4024","peg","scaffold5|size289205_206720_206505",206720,206505,"-","Hypothetical protein YfkK","FIG00002705","icw(1);LMPTP_YfkJ_cluster"]
["scaffold5|size289205","fig|6666666.156949.peg.4025","peg","scaffold5|size289205_206696_206839",206696,206839,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4026","peg","scaffold5|size289205_206923_207393",206923,207393,"+","Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)","FIG00059124","icw(2);LMPTP_YfkJ_cluster"]
["scaffold5|size289205","fig|6666666.156949.peg.4027","peg","scaffold5|size289205_207411_207731",207411,207731,"+","Hypothetical protein YfkI","FIG01226970","isu;LMPTP_YfkJ_cluster"]
["scaffold5|size289205","fig|6666666.156949.peg.4028","peg","scaffold5|size289205_207755_208582",207755,208582,"+","Ribonuclease BN (EC 3.1.-.-)","FIG00136522","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4029","peg","scaffold5|size289205_209956_208781",209956,208781,"-","L-Proline/Glycine betaine transporter ProP","FIG00061305","idu(4);Proline,_4-hydroxyproline_uptake_and_utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.4030","peg","scaffold5|size289205_209984_210127",209984,210127,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4031","peg","scaffold5|size289205_210124_211179",210124,211179,"+","Calcium/proton antiporter","FIG00634903","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4032","peg","scaffold5|size289205_211250_212044",211250,212044,"+","FIG01226204: hypothetical protein","FIG01226202","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4033","peg","scaffold5|size289205_212919_212083",212919,212083,"-","Potassium efflux system KefA protein / Small-conductance mechanosensitive channel","NA","idu(1);Potassium_homeostasis"]
["scaffold5|size289205","fig|6666666.156949.peg.4034","peg","scaffold5|size289205_214047_212926",214047,212926,"-","Thioredoxin-like oxidoreductases","FIG00645911","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4035","peg","scaffold5|size289205_214192_214377",214192,214377,"+","FIG01226681: hypothetical protein","FIG01226680","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4036","peg","scaffold5|size289205_214478_215269",214478,215269,"+","Polysaccharide deacetylase","FIG00004655","idu(1);Polysaccharide_deacetylases"]
["scaffold5|size289205","fig|6666666.156949.peg.4037","peg","scaffold5|size289205_216167_215307",216167,215307,"-","2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)","FIG00133229","idu(1);Glycerate_metabolism idu(1);Allantoin_Utilization idu(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism idu(1);D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo"]
["scaffold5|size289205","fig|6666666.156949.peg.4038","peg","scaffold5|size289205_217225_216266",217225,216266,"-","Magnesium and cobalt transport protein CorA","FIG00004180","idu(1);Magnesium_transport idu(1);Campylobacter_Iron_Metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.4039","peg","scaffold5|size289205_217343_218206",217343,218206,"+","DNA-3-methyladenine glycosylase II (EC 3.2.2.21)","FIG00001134","idu(2);DNA_Repair_Base_Excision"]
["scaffold5|size289205","fig|6666666.156949.peg.4040","peg","scaffold5|size289205_218322_219722",218322,219722,"+","RNA methyltransferase, TrmA family","FIG00004538","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4041","peg","scaffold5|size289205_219975_219826",219975,219826,"-","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4042","peg","scaffold5|size289205_221359_222336",221359,222336,"+","tRNA dihydrouridine synthase B (EC 1.-.-.-)","FIG00000580","idu(1);tRNA_modification_Bacteria"]
["scaffold5|size289205","fig|6666666.156949.peg.4043","peg","scaffold5|size289205_222532_222981,scaffold5|size289205_222985_223017",222532,223017,"+","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4044","peg","scaffold5|size289205_223014_223697",223014,223697,"+","alternate gene name: yztA","FIG01423653","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4045","peg","scaffold5|size289205_223802_223686",223802,223686,"-","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4046","peg","scaffold5|size289205_223927_224928",223927,224928,"+","Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)","FIG00138523","icw(2);Dehydrogenase_complexes icw(2);Acetoin,_butanediol_metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.4047","peg","scaffold5|size289205_224932_225960",224932,225960,"+","Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)","FIG01256920","icw(1);Dehydrogenase_complexes icw(1);Acetoin,_butanediol_metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.4048","peg","scaffold5|size289205_225974_227170",225974,227170,"+","Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)","FIG01970261","icw(3);Dehydrogenase_complexes icw(4);Acetoin,_butanediol_metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.4049","peg","scaffold5|size289205_227191_228567",227191,228567,"+","Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)","FIG00133226","isu;Dehydrogenase_complexes isu;Acetoin,_butanediol_metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.4050","peg","scaffold5|size289205_228647_230500",228647,230500,"+","Transcriptional activator of acetoin dehydrogenase operon AcoR","FIG00002646","icw(2);Acetoin,_butanediol_metabolism"]
["scaffold5|size289205","fig|6666666.156949.peg.4051","peg","scaffold5|size289205_230554_230733",230554,230733,"+","acid-soluble spore protein H","FIG01240756","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4052","peg","scaffold5|size289205_231098_230769",231098,230769,"-","Protein of unknown function UPF0060","FIG00554442","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4053","peg","scaffold5|size289205_231705_231148",231705,231148,"-","FIG01235782: hypothetical protein","FIG01329356","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4054","peg","scaffold5|size289205_232504_231737",232504,231737,"-","Uncharacterized protein yfjC","FIG01245429","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4055","peg","scaffold5|size289205_233739_232516",233739,232516,"-","FIG01239754: hypothetical protein","FIG01239751","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4056","peg","scaffold5|size289205_234059_233745",234059,233745,"-","FIG01234045: hypothetical protein","FIG01234044","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4057","peg","scaffold5|size289205_234395_235744",234395,235744,"+","Maltose-6'-phosphate glucosidase (EC 3.2.1.122)","FIG00003756","isu;Trehalose_Uptake_and_Utilization isu;Maltose_and_Maltodextrin_Utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.4058","peg","scaffold5|size289205_235809_236573",235809,236573,"+","Transcriptional regulator, RpiR family","FIG01320204","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4059","peg","scaffold5|size289205_236588_238171",236588,238171,"+","PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)","FIG00001808","icw(1);Maltose_and_Maltodextrin_Utilization icw(1);Maltose_and_Maltodextrin_Utilization"]
["scaffold5|size289205","fig|6666666.156949.peg.4060","peg","scaffold5|size289205_238295_240628",238295,240628,"+","FIG01252029: hypothetical protein","FIG01322953","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4061","peg","scaffold5|size289205_241043_242764",241043,242764,"+","Lipid A export ATP-binding/permease protein MsbA","FIG00017059","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4062","peg","scaffold5|size289205_242758_244572",242758,244572,"+","Lipid A export ATP-binding/permease protein MsbA","FIG00017059","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4063","peg","scaffold5|size289205_244726_245130",244726,245130,"+","FIG01237289: hypothetical protein","FIG01237288","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4064","peg","scaffold5|size289205_245148_246005",245148,246005,"+","Biphenyl-2,3-diol 1,2-dioxygenase (EC 1.13.11.39)","NA","isu;Biphenyl_Degradation"]
["scaffold5|size289205","fig|6666666.156949.peg.4065","peg","scaffold5|size289205_246159_247325",246159,247325,"+","putative two-component system sensor kinase","FIG00868571","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4066","peg","scaffold5|size289205_247322_247984",247322,247984,"+","DNA-binding response regulator, LuxR family","FIG01307606","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4067","peg","scaffold5|size289205_248127_249062",248127,249062,"+","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4068","peg","scaffold5|size289205_249075_250265",249075,250265,"+","ABC transporter, ATP-binding protein","FIG00744535","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4069","peg","scaffold5|size289205_250279_251436",250279,251436,"+","ABC transporter, ATP-binding protein, putative","FIG01228035","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4070","peg","scaffold5|size289205_252057_251509",252057,251509,"-","Negative regulator of phenolic acid metabolism PadR","FIG00108063","isu;CBSS-1352.1.peg.856"]
["scaffold5|size289205","fig|6666666.156949.peg.4071","peg","scaffold5|size289205_252329_252961",252329,252961,"+","extracellular esterase","FIG01234702","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4072","peg","scaffold5|size289205_253180_254268",253180,254268,"+","YfiQ","FIG01385900","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4073","peg","scaffold5|size289205_254921_254304",254921,254304,"-","transcriptional regulator, TetR family","FIG00628138","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4074","peg","scaffold5|size289205_256140_254887",256140,254887,"-","nickel resistance protein","FIG01475129","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4075","peg","scaffold5|size289205_256265_256152",256265,256152,"-","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4076","peg","scaffold5|size289205_256264_256800",256264,256800,"+","Hypothetical cytosolic protein","FIG01230840","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4077","peg","scaffold5|size289205_258353_256797",258353,256797,"-","drug resistance transporter, EmrB/QacA family","FIG01265370","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4078","peg","scaffold5|size289205_258947_258465",258947,258465,"-","putative transcriptional regulator YfiV","FIG01229649","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4079","peg","scaffold5|size289205_259118_259801,scaffold5|size289205_259801_259893",259118,259893,"+","L-O-lysylphosphatidylglycerol synthase (EC 2.3.2.3)","FIG01311103","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4080","peg","scaffold5|size289205_262684_261707",262684,261707,"-","ABC-type Fe3+-siderophore transport system, periplasmic iron-binding component","FIG00149134","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4081","peg","scaffold5|size289205_262815_263816",262815,263816,"+","ABC-type Fe3+-siderophore transport system, permease component","FIG00696717","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4082","peg","scaffold5|size289205_263813_264844",263813,264844,"+","ABC-type Fe3+-siderophore transport system, permease 2 component","FIG00007866","idu(1);Flavohaemoglobin"]
["scaffold5|size289205","fig|6666666.156949.peg.4083","peg","scaffold5|size289205_264959_265840",264959,265840,"+","Phenazine biosynthesis protein PhzF like","FIG01247796","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4084","peg","scaffold5|size289205_265928_266512",265928,266512,"+","Putative nitroreductase family protein SACOL0874","FIG00007242","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4085","peg","scaffold5|size289205_266742_266551",266742,266551,"-","hypothetical protein","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4086","peg","scaffold5|size289205_266937_266809",266937,266809,"-","unknown","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4087","peg","scaffold5|size289205_267885_266974",267885,266974,"-","Cell division inhibitor","FIG00002048","isu;CBSS-261594.1.peg.788 isu;CBSS-83333.1.peg.946 isu;Persister_Cells"]
["scaffold5|size289205","fig|6666666.156949.peg.4088","peg","scaffold5|size289205_267974_268768",267974,268768,"+","regulatory protein RecX","FIG01309886","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4089","peg","scaffold5|size289205_268770_269084",268770,269084,"+","Transcription regulator CDS_ID OB0894","FIG00003707","icw(1);CBSS-261594.1.peg.788"]
["scaffold5|size289205","fig|6666666.156949.peg.4090","peg","scaffold5|size289205_269227_270420",269227,270420,"+","FIG01233519: hypothetical protein","FIG01233517","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4091","peg","scaffold5|size289205_270604_270452",270604,270452,"-","Small, acid-soluble spore protein K","NA","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4092","peg","scaffold5|size289205_270729_270998",270729,270998,"+","Conserved protein YfhJ","FIG00675079","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4093","peg","scaffold5|size289205_271143_271661",271143,271661,"+","FIG01242370: hypothetical protein","FIG01242369","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4094","peg","scaffold5|size289205_271746_272063",271746,272063,"+","FIG01232423: hypothetical protein","FIG01232422","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4095","peg","scaffold5|size289205_272065_272925",272065,272925,"+","Epoxide hydrolase (EC 3.3.2.9)","FIG00009455","isu;CBSS-410289.13.peg.3174"]
["scaffold5|size289205","fig|6666666.156949.peg.4096","peg","scaffold5|size289205_273157_274146",273157,274146,"+","stress response protein","FIG01421075","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4097","peg","scaffold5|size289205_274218_276803",274218,276803,"+","FIG01108412: hypothetical protein","FIG01108410","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4098","peg","scaffold5|size289205_277779_276796",277779,276796,"-","Hypothetical protein SAV1869","FIG00009530","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4099","peg","scaffold5|size289205_277995_279104",277995,279104,"+","A/G-specific adenine glycosylase (EC 3.2.2.-)","FIG00000395","isu;CBSS-261594.1.peg.788 isu;DNA_repair,_bacterial"]
["scaffold5|size289205","fig|6666666.156949.peg.4100","peg","scaffold5|size289205_279336_279112",279336,279112,"-","YfhS protein","FIG01313768","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4101","peg","scaffold5|size289205_279418_280170",279418,280170,"+","Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10)","FIG00032108","isu;Fatty_Acid_Biosynthesis_FASII"]
["scaffold5|size289205","fig|6666666.156949.peg.4102","peg","scaffold5|size289205_280239_280493",280239,280493,"+","Small acid-soluble spore protein, gamma-type SASP","FIG00012521","isu;Small_acid-soluble_spore_proteins"]
["scaffold5|size289205","fig|6666666.156949.peg.4103","peg","scaffold5|size289205_280603_280926",280603,280926,"+","FIG01225283: hypothetical protein","FIG01225282","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4104","peg","scaffold5|size289205_281070_281600",281070,281600,"+","Cysteinyl-tRNA synthetase related protein","FIG00002395","icw(1);CBSS-261594.1.peg.788"]
["scaffold5|size289205","fig|6666666.156949.peg.4105","peg","scaffold5|size289205_281687_283429",281687,283429,"+","Lipid A export ATP-binding/permease protein MsbA","FIG00017059","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4106","peg","scaffold5|size289205_284565_283504",284565,283504,"-","Putative lipoprotein SAV1865","FIG00002554","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4107","peg","scaffold5|size289205_286075_284786",286075,284786,"-","Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)","FIG00000338","idu(1);CBSS-196164.1.peg.461 idu(1);Heme_and_Siroheme_Biosynthesis"]
["scaffold5|size289205","fig|6666666.156949.peg.4108","peg","scaffold5|size289205_286227_286385,scaffold5|size289205_286385_286405,scaffold5|size289205_286409_286465,scaffold5|size289205_286467_286700",286227,286700,"+","Thiol peroxidase, Bcp-type (EC 1.11.1.15)","FIG00132548","isu;Thioredoxin-disulfide_reductase"]
["scaffold5|size289205","fig|6666666.156949.peg.4109","peg","scaffold5|size289205_286823_287260",286823,287260,"+","Peroxide stress regulator PerR, FUR family","FIG00001491","isu;Oxidative_stress"]
["scaffold5|size289205","fig|6666666.156949.peg.4110","peg","scaffold5|size289205_287648_287295",287648,287295,"-","FIG01236629: hypothetical protein","FIG01236628","NA"]
["scaffold5|size289205","fig|6666666.156949.peg.4111","peg","scaffold5|size289205_287856_288740",287856,288740,"+","CDS_ID OB0907","FIG00672685","NA"]
["scaffold5|size289205","fig|6666666.156949.rna.100","rna","scaffold5|size289205_289032_289205",289032,289205,"+","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold61|size1025","fig|6666666.156949.peg.4112","peg","scaffold61|size1025_545_78",545,78,"-","FIG00511790: hypothetical protein","FIG00511789","NA"]
["scaffold61|size1025","fig|6666666.156949.peg.4113","peg","scaffold61|size1025_537_1004",537,1004,"+","hypothetical protein","NA","NA"]
["scaffold64|size1021","fig|6666666.156949.peg.4114","peg","scaffold64|size1021_28_141",28,141,"+","hypothetical protein","NA","NA"]
["scaffold65|size1002","fig|6666666.156949.rna.101","rna","scaffold65|size1002_1002_225",1002,225,"-","Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA","NA","NA"]
["scaffold66|size997","fig|6666666.156949.peg.4115","peg","scaffold66|size997_42_389",42,389,"+","Ketopantoate reductase PanG (EC 1.1.1.169)","NA","isu;Folate_biosynthesis_cluster isu;Coenzyme_A_Biosynthesis_cluster isu;Coenzyme_A_Biosynthesis"]
["scaffold66|size997","fig|6666666.156949.peg.4116","peg","scaffold66|size997_939_424",939,424,"-","Putative membrane protein precursor","NA","NA"]
["scaffold68|size993","fig|6666666.156949.peg.4117","peg","scaffold68|size993_99_239",99,239,"+","hypothetical protein","NA","NA"]
["scaffold69|size989","fig|6666666.156949.peg.4118","peg","scaffold69|size989_116_724",116,724,"+","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4119","peg","scaffold6|size79869_6_536",6,536,"+","RNA polymerase sporulation specific sigma factor SigK","FIG00004021","isu;Sporulation_gene_orphans isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold6|size79869","fig|6666666.156949.peg.4120","peg","scaffold6|size79869_536_652",536,652,"+","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4121","peg","scaffold6|size79869_752_603",752,603,"-","FIG01250505: hypothetical protein","FIG01250503","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4122","peg","scaffold6|size79869_1914_1495",1914,1495,"-","phosphate-starvation-inducible protein PsiE","FIG00627622","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4123","peg","scaffold6|size79869_3207_1957",3207,1957,"-","Two component system histidine kinase (EC 2.7.3.-)","FIG01361358","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4124","peg","scaffold6|size79869_3937_3242",3937,3242,"-","DNA-binding response regulator","FIG01031438","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4125","peg","scaffold6|size79869_4204_5421",4204,5421,"+","Uncharacterized protein yrkO","FIG01231110","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4126","peg","scaffold6|size79869_5747_5887",5747,5887,"+","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4127","peg","scaffold6|size79869_5931_6488",5931,6488,"+","GCN5-related N-acetyltransferase","FIG01272034","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4128","peg","scaffold6|size79869_7502_6978",7502,6978,"-","Glutathione-regulated potassium-efflux system ancillary protein KefF","FIG00003549","isu;Potassium_homeostasis"]
["scaffold6|size79869","fig|6666666.156949.peg.4129","peg","scaffold6|size79869_8073_7747",8073,7747,"-","unknown","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4130","peg","scaffold6|size79869_9589_8804",9589,8804,"-","FIG003846: hypothetical protein","FIG00003846","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4131","peg","scaffold6|size79869_9876_9649",9876,9649,"-","Rhodanese-like domain protein","FIG00003495","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4132","peg","scaffold6|size79869_11037_9910",11037,9910,"-","Zn-dependent hydroxyacylglutathione hydrolase","FIG00882404","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4133","peg","scaffold6|size79869_11936_11379",11936,11379,"-","Rhodanese-like domain protein","FIG00003495","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4134","peg","scaffold6|size79869_12596_12114",12596,12114,"-","Putative sulfide reductase","FIG01956075","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4135","peg","scaffold6|size79869_12936_12745",12936,12745,"-","FIG007303: uncharacterized protein","FIG00007303","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4136","peg","scaffold6|size79869_13061_12939",13061,12939,"-","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4137","peg","scaffold6|size79869_14300_13740",14300,13740,"-","Uncharacterized protein yrkC","FIG01246203","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4138","peg","scaffold6|size79869_15662_14841",15662,14841,"-","Multidrug-efflux transporter 2 regulator","FIG01451919","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4139","peg","scaffold6|size79869_15779_16981",15779,16981,"+","Multidrug resistance protein B","FIG01356213","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4140","peg","scaffold6|size79869_17181_17639",17181,17639,"+","spermine/spermidine acetyltransferase","FIG01329165","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4141","peg","scaffold6|size79869_19100_17796",19100,17796,"-","Magnesium and cobalt efflux protein CorC","FIG00042627","idu(4);Magnesium_transport idu(4);Glycyl-tRNA_synthetase_containing_cluster idu(4);CBSS-56780.10.peg.1536"]
["scaffold6|size79869","fig|6666666.156949.peg.4142","peg","scaffold6|size79869_19275_19153",19275,19153,"-","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4143","peg","scaffold6|size79869_19525_19382",19525,19382,"-","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4144","peg","scaffold6|size79869_20508_19543",20508,19543,"-","transporter, EamA family","FIG01289018","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4145","peg","scaffold6|size79869_20633_21499",20633,21499,"+","Cyn operon transcriptional activator","FIG00011094","isu;LysR-family_proteins_in_Escherichia_coli"]
["scaffold6|size79869","fig|6666666.156949.peg.4146","peg","scaffold6|size79869_22659_21787,scaffold6|size79869_21785_21621",22659,21621,"-","FIG01237672: hypothetical protein","FIG01356891","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4147","peg","scaffold6|size79869_23694_22747",23694,22747,"-","Cobalt-zinc-cadmium resistance protein CzcD","FIG00000503","isu;CBSS-36873.1.peg.4752 isu;Cobalt-zinc-cadmium_resistance"]
["scaffold6|size79869","fig|6666666.156949.peg.4148","peg","scaffold6|size79869_25693_24371",25693,24371,"-","Branched-chain amino acid transport system carrier protein","FIG00905542","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4149","peg","scaffold6|size79869_26190_25858",26190,25858,"-","Branched-chain amino acid transport protein azlD","FIG01317936","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4150","peg","scaffold6|size79869_26951_26187",26951,26187,"-","Branched-chain amino acid transport protein AzlC","FIG00431779","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4151","peg","scaffold6|size79869_27437_26964",27437,26964,"-","negative regulation of the azlBCD operon","FIG01614668","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4152","peg","scaffold6|size79869_28036_27761",28036,27761,"-","Barstar","FIG01347553","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4153","peg","scaffold6|size79869_29538_28306",29538,28306,"-","putative cytochrome P450 hydroxylase","FIG00032437","idu(3);Nitric_oxide_synthase"]
["scaffold6|size79869","fig|6666666.156949.peg.4154","peg","scaffold6|size79869_30044_29763",30044,29763,"-","FIG01237302: hypothetical protein","FIG01392445","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4155","peg","scaffold6|size79869_30793_30227",30793,30227,"-","isochorismatase family protein","FIG01339437","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4156","peg","scaffold6|size79869_32728_32225",32728,32225,"-","DinB family protein","FIG01318864","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4157","peg","scaffold6|size79869_33802_32948",33802,32948,"-","putative aminoglycoside 6-adenylyltansferase","FIG00630198","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4158","peg","scaffold6|size79869_34197_35240",34197,35240,"+","Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)","FIG00007641","idu(1);Fatty_Acid_Biosynthesis_FASII"]
["scaffold6|size79869","fig|6666666.156949.peg.4159","peg","scaffold6|size79869_35635_36387",35635,36387,"+","Glutamate racemase (EC 5.1.1.3)","FIG00000397","idu(1);Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis idu(1);Poly-gamma-glutamate_biosynthesis idu(1);Peptidoglycan_Biosynthesis"]
["scaffold6|size79869","fig|6666666.156949.peg.4160","peg","scaffold6|size79869_36765_37475",36765,37475,"+","FIG01231987: hypothetical protein","FIG01231985","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4161","peg","scaffold6|size79869_38572_38345",38572,38345,"-","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4162","peg","scaffold6|size79869_39394_38636",39394,38636,"-","Candidate zinc-binding lipoprotein ZinT","FIG01307865","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4163","peg","scaffold6|size79869_40058_39528",40058,39528,"-","RNA polymerase sigma factor SigZ","FIG00012379","isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold6|size79869","fig|6666666.156949.peg.4164","peg","scaffold6|size79869_40194_41174",40194,41174,"+","L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122)","FIG00139408","isu;L-fucose_utilization_temp"]
["scaffold6|size79869","fig|6666666.156949.peg.4165","peg","scaffold6|size79869_42148_41333",42148,41333,"-","Chitosanase precursor (EC 3.2.1.132)","FIG01399652","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4166","peg","scaffold6|size79869_42498_42367",42498,42367,"-","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4167","peg","scaffold6|size79869_42592_42855",42592,42855,"+","Putative uncharacterized protein YraL","FIG01320094","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4168","peg","scaffold6|size79869_42992_43807",42992,43807,"+","abhydrolase, alpha/beta hydrolase fold","FIG01340120","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4169","peg","scaffold6|size79869_44577_44215",44577,44215,"-","Membrane proteins related to metalloendopeptidases","FIG00011382","icw(1);CBSS-393121.3.peg.2760"]
["scaffold6|size79869","fig|6666666.156949.peg.4170","peg","scaffold6|size79869_44959_44624",44959,44624,"-","Membrane proteins related to metalloendopeptidases","FIG00011382","icw(1);CBSS-393121.3.peg.2760"]
["scaffold6|size79869","fig|6666666.156949.peg.4171","peg","scaffold6|size79869_45885_45499",45885,45499,"-","Lactoylglutathione lyase and related lyases","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4172","peg","scaffold6|size79869_46134_46379",46134,46379,"+","Spore coat protein F","FIG00014890","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4173","peg","scaffold6|size79869_46397_46765",46397,46765,"+","Spore coat protein F","FIG00014890","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4174","peg","scaffold6|size79869_46784_47920",46784,47920,"+","Uncharacterized zinc-type alcohol dehydrogenase-like protein ybdR","FIG00554631","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4175","peg","scaffold6|size79869_47939_48136",47939,48136,"+","Spore coat protein F","FIG00014890","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4176","peg","scaffold6|size79869_48152_48451",48152,48451,"+","Spore coat protein F","FIG00014890","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4177","peg","scaffold6|size79869_49134_48712",49134,48712,"-","transcriptional regulator, MerR family","FIG00482799","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4178","peg","scaffold6|size79869_49309_49464",49309,49464,"+","4-carboxymuconolactone decarboxylase (EC 4.1.1.44)","FIG01304850","isu;Protocatechuate_branch_of_beta-ketoadipate_pathway isu;Pyrene_degradation"]
["scaffold6|size79869","fig|6666666.156949.peg.4179","peg","scaffold6|size79869_49629_50678",49629,50678,"+","Alcohol dehydrogenase (EC 1.1.1.1)","FIG01007502","idu(2);5-FCL-like_protein idu(2);Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria idu(2);Fermentations:_Mixed_acid idu(2);Butanol_Biosynthesis"]
["scaffold6|size79869","fig|6666666.156949.peg.4180","peg","scaffold6|size79869_50812_51321",50812,51321,"+","ThiJ/PfpI family protein","FIG00015923","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4181","peg","scaffold6|size79869_53420_51363",53420,51363,"-","Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)","FIG00010392","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4182","peg","scaffold6|size79869_54380_53553",54380,53553,"-","PTS system, mannose-specific IID component (EC 2.7.1.69)","NA","icw(3);Mannose_Metabolism icw(3);Sialic_Acid_Metabolism"]
["scaffold6|size79869","fig|6666666.156949.peg.4183","peg","scaffold6|size79869_55208_54402",55208,54402,"-","PTS system, mannose-specific IIC component (EC 2.7.1.69)","NA","icw(2);Mannose_Metabolism icw(2);Sialic_Acid_Metabolism"]
["scaffold6|size79869","fig|6666666.156949.peg.4184","peg","scaffold6|size79869_55716_55225",55716,55225,"-","PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69)","NA","icw(1);Mannose_Metabolism icw(2);Mannose_Metabolism icw(1);Sialic_Acid_Metabolism icw(2);Sialic_Acid_Metabolism"]
["scaffold6|size79869","fig|6666666.156949.peg.4185","peg","scaffold6|size79869_56153_55713",56153,55713,"-","PTS system, mannose-specific IIB component (EC 2.7.1.69) / PTS system, mannose-specific IIA component (EC 2.7.1.69)","NA","icw(1);Mannose_Metabolism icw(2);Mannose_Metabolism icw(1);Sialic_Acid_Metabolism icw(2);Sialic_Acid_Metabolism"]
["scaffold6|size79869","fig|6666666.156949.peg.4186","peg","scaffold6|size79869_59141_56334",59141,56334,"-","NtrC family Transcriptional regulator, ATPase domain","FIG01333098","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4187","peg","scaffold6|size79869_59958_61265",59958,61265,"+","D-serine/D-alanine/glycine transporter","FIG00003984","idu(2);Glycine_and_Serine_Utilization idu(2);Pyruvate_Alanine_Serine_Interconversions"]
["scaffold6|size79869","fig|6666666.156949.peg.4188","peg","scaffold6|size79869_61991_61359",61991,61359,"-","L-lysine permease","FIG00000250","isu;Lysine_degradation"]
["scaffold6|size79869","fig|6666666.156949.peg.4189","peg","scaffold6|size79869_62144_62971",62144,62971,"+","Transcriptional regulator, TrmB family","FIG01313300","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4190","peg","scaffold6|size79869_63167_63667",63167,63667,"+","RNA polymerase sigma factor SigV","FIG00099318","idu(1);Transcription_initiation,_bacterial_sigma_factors"]
["scaffold6|size79869","fig|6666666.156949.peg.4191","peg","scaffold6|size79869_63667_64524",63667,64524,"+","anti-sigma factor homolog yrhM","FIG01415510","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4192","peg","scaffold6|size79869_64634_66538",64634,66538,"+","Acyltransferase","FIG01336741","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4193","peg","scaffold6|size79869_66670_66963",66670,66963,"+","YrhK","FIG01241691","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4194","peg","scaffold6|size79869_70371_67207",70371,67207,"-","Probable bifunctional P-450/NADPH-P450 reductase CypD","FIG01317651","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4195","peg","scaffold6|size79869_70877_70371",70877,70371,"-","Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family # predicted by FIG","NA","isu;Multidrug_Resistance_Efflux_Pumps"]
["scaffold6|size79869","fig|6666666.156949.peg.4196","peg","scaffold6|size79869_71648_71193",71648,71193,"-","FIG01230763: hypothetical protein","FIG01230762","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4197","peg","scaffold6|size79869_71932_71798",71932,71798,"-","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4198","peg","scaffold6|size79869_72081_71923",72081,71923,"-","FIG01234257: hypothetical protein","FIG01234255","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4199","peg","scaffold6|size79869_72387_72238",72387,72238,"-","hypothetical protein","NA","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4200","peg","scaffold6|size79869_73576_72776",73576,72776,"-","Formate efflux transporter (TC 2.A.44 family)","FIG00010675","idu(1);Fermentations:_Mixed_acid"]
["scaffold6|size79869","fig|6666666.156949.peg.4201","peg","scaffold6|size79869_74207_73839",74207,73839,"-","FIG01225689: hypothetical protein","FIG01225687","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4202","peg","scaffold6|size79869_74517_77465",74517,77465,"+","Formate dehydrogenase related protein","FIG00002024","idu(1);Formate_hydrogenase"]
["scaffold6|size79869","fig|6666666.156949.peg.4203","peg","scaffold6|size79869_77484_77966",77484,77966,"+","Hypothetical protein YrhD","FIG00002162","icw(1);Formate_hydrogenase"]
["scaffold6|size79869","fig|6666666.156949.peg.4204","peg","scaffold6|size79869_78232_78002",78232,78002,"-","FIG01228109: hypothetical protein","FIG01228107","NA"]
["scaffold6|size79869","fig|6666666.156949.peg.4205","peg","scaffold6|size79869_79454_78315",79454,78315,"-","Cystathionine gamma-lyase (EC 4.4.1.1)","FIG00001346","isu;Methionine_Degradation isu;Glycine_and_Serine_Utilization isu;Cysteine_Biosynthesis isu;Methionine_Biosynthesis"]
["scaffold6|size79869","fig|6666666.156949.peg.4206","peg","scaffold6|size79869_79629_79456",79629,79456,"-","Cystathionine beta-synthase (EC 4.2.1.22)","FIG00022427","icw(1);Methionine_Degradation icw(1);Glycine_and_Serine_Utilization icw(1);Cysteine_Biosynthesis icw(1);Methionine_Biosynthesis"]
["scaffold70|size987","fig|6666666.156949.peg.4207","peg","scaffold70|size987_840_139",840,139,"-","hypothetical protein","NA","NA"]
["scaffold70|size987","fig|6666666.156949.peg.4208","peg","scaffold70|size987_821_955",821,955,"+","hypothetical protein","NA","NA"]
["scaffold71|size958","fig|6666666.156949.peg.4209","peg","scaffold71|size958_745_617",745,617,"-","DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6), chloroplast","FIG01301029","NA"]
["scaffold72|size943","fig|6666666.156949.peg.4210","peg","scaffold72|size943_594_424",594,424,"-","hypothetical protein","NA","NA"]
["scaffold73|size942","fig|6666666.156949.peg.4211","peg","scaffold73|size942_732_598",732,598,"-","hypothetical protein","NA","NA"]
["scaffold74|size940","fig|6666666.156949.peg.4212","peg","scaffold74|size940_408_560",408,560,"+","hypothetical protein","NA","NA"]
["scaffold74|size940","fig|6666666.156949.peg.4213","peg","scaffold74|size940_872_570",872,570,"-","hypothetical protein","NA","NA"]
["scaffold75|size933","fig|6666666.156949.peg.4214","peg","scaffold75|size933_288_175",288,175,"-","hypothetical protein","NA","NA"]
["scaffold76|size930","fig|6666666.156949.peg.4215","peg","scaffold76|size930_585_136",585,136,"-","DNA-binding response regulator mtrA","NA","NA"]
["scaffold7|size59880","fig|6666666.156949.rna.102","rna","scaffold7|size59880_6_121",6,121,"+","5S RNA","NA","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4216","peg","scaffold7|size59880_362_826",362,826,"+","Transcriptional regulator CtsR","FIG00367528","icw(3);Proteolysis_in_bacteria,_ATP-dependent"]
["scaffold7|size59880","fig|6666666.156949.peg.4217","peg","scaffold7|size59880_1017_1397",1017,1397,"+","Nucleotide excision repair protein, with UvrB/UvrC motif","FIG00002022","icw(2);Proteolysis_in_bacteria,_ATP-dependent"]
["scaffold7|size59880","fig|6666666.156949.peg.4218","peg","scaffold7|size59880_1397_2488",1397,2488,"+","Putative ATP:guanido phosphotransferase YacI (EC 2.7.3.-)","FIG00007067","icw(1);Proteolysis_in_bacteria,_ATP-dependent"]
["scaffold7|size59880","fig|6666666.156949.peg.4219","peg","scaffold7|size59880_2485_4917",2485,4917,"+","ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative regulator of genetic competence clcC/mecB","FIG00011902","icw(4);Proteolysis_in_bacteria,_ATP-dependent"]
["scaffold7|size59880","fig|6666666.156949.peg.4220","peg","scaffold7|size59880_5009_6385",5009,6385,"+","DNA repair protein RadA","FIG00000283","isu;Proteolysis_in_bacteria,_ATP-dependent isu;A_DNA_integrity_scanning_protein_that_co-occurs_with_RadA isu;DNA_repair,_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4221","peg","scaffold7|size59880_6389_7471",6389,7471,"+","DNA integrity scanning protein DisA","FIG00012395","icw(1);A_DNA_integrity_scanning_protein_that_co-occurs_with_RadA"]
["scaffold7|size59880","fig|6666666.156949.peg.4222","peg","scaffold7|size59880_7587_8687",7587,8687,"+","Membrane-associated protein containing RNA-binding TRAM domain and ribonuclease PIN-domain, YacL B.subtilis ortholog","FIG00001544","icw(1);Proteolysis_in_bacteria,_ATP-dependent"]
["scaffold7|size59880","fig|6666666.156949.peg.4223","peg","scaffold7|size59880_8702_9400",8702,9400,"+","2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)","FIG00074225","icw(1);Isoprenoid_Biosynthesis icw(1);Stationary_phase_repair_cluster icw(1);Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis isu;Teichoic_and_lipoteichoic_acids_biosynthesis"]
["scaffold7|size59880","fig|6666666.156949.peg.4224","peg","scaffold7|size59880_9393_9869",9393,9869,"+","2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)","FIG00084105","isu;Isoprenoid_Biosynthesis isu;Stationary_phase_repair_cluster isu;Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis"]
["scaffold7|size59880","fig|6666666.156949.peg.4225","peg","scaffold7|size59880_9960_11411",9960,11411,"+","Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)","FIG00000686","isu;Heme_and_Siroheme_Biosynthesis isu;tRNA_aminoacylation,_Glu_and_Gln isu;tRNA_aminoacylation,_Glu_and_Gln"]
["scaffold7|size59880","fig|6666666.156949.peg.4226","peg","scaffold7|size59880_11538_11723",11538,11723,"+","FIG01247248: hypothetical protein","FIG01363393","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4227","peg","scaffold7|size59880_11725_12366",11725,12366,"+","Serine acetyltransferase (EC 2.3.1.30)","FIG00000128","icw(2);Conserved_gene_cluster_possibly_involved_in_RNA_metabolism isu;Cysteine_Biosynthesis isu;Methionine_Biosynthesis"]
["scaffold7|size59880","fig|6666666.156949.peg.4228","peg","scaffold7|size59880_12363_13763",12363,13763,"+","Cysteinyl-tRNA synthetase (EC 6.1.1.16)","FIG00000086","isu;Conserved_gene_cluster_possibly_involved_in_RNA_metabolism isu;Zinc_regulated_enzymes isu;tRNA_aminoacylation,_Cys"]
["scaffold7|size59880","fig|6666666.156949.peg.4229","peg","scaffold7|size59880_13767_14198",13767,14198,"+","COG1939: Ribonuclease III family protein","FIG00001298","icw(4);Conserved_gene_cluster_possibly_involved_in_RNA_metabolism"]
["scaffold7|size59880","fig|6666666.156949.peg.4230","peg","scaffold7|size59880_14182_14931",14182,14931,"+","23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)","FIG00001049","isu;RNA_methylation"]
["scaffold7|size59880","fig|6666666.156949.peg.4231","peg","scaffold7|size59880_14938_15450",14938,15450,"+","Hypothetical protein DUF901, similar to C-terminal domain of ribosome protection-type Tc-resistance proteins","FIG00001549","icw(3);Conserved_gene_cluster_possibly_involved_in_RNA_metabolism"]
["scaffold7|size59880","fig|6666666.156949.peg.4232","peg","scaffold7|size59880_15513_16169",15513,16169,"+","RNA polymerase sporulation specific sigma factor SigH","FIG00002561","icw(1);Conserved_gene_cluster_possibly_involved_in_RNA_metabolism isu;Sporulation-associated_proteins_with_broader_functions isu;Transcription_initiation,_bacterial_sigma_factors"]
["scaffold7|size59880","fig|6666666.156949.peg.4233","peg","scaffold7|size59880_16262_16411",16262,16411,"+","LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-dependent","FIG00906302","icw(2);Ribosome_LSU_bacterial icw(4);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4234","peg","scaffold7|size59880_16445_16624",16445,16624,"+","Preprotein translocase subunit SecE (TC 3.A.5.1.1)","FIG00001219","isu;LSU_ribosomal_proteins_cluster"]
["scaffold7|size59880","fig|6666666.156949.peg.4235","peg","scaffold7|size59880_16803_17336",16803,17336,"+","Transcription antitermination protein NusG","FIG00000269","icw(3);LSU_ribosomal_proteins_cluster isu;Transcription_factors_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4236","peg","scaffold7|size59880_17504_17929",17504,17929,"+","LSU ribosomal protein L11p (L12e)","FIG00000182","isu;Ribosome_LSU_bacterial icw(2);LSU_ribosomal_proteins_cluster"]
["scaffold7|size59880","fig|6666666.156949.peg.4237","peg","scaffold7|size59880_18024_18722",18024,18722,"+","LSU ribosomal protein L1p (L10Ae)","FIG00000264","icw(1);Ribosome_LSU_bacterial icw(4);LSU_ribosomal_proteins_cluster"]
["scaffold7|size59880","fig|6666666.156949.peg.4238","peg","scaffold7|size59880_18974_19474",18974,19474,"+","LSU ribosomal protein L10p (P0)","FIG00000159","icw(3);Ribosome_LSU_bacterial icw(5);LSU_ribosomal_proteins_cluster"]
["scaffold7|size59880","fig|6666666.156949.peg.4239","peg","scaffold7|size59880_19520_19891",19520,19891,"+","LSU ribosomal protein L7/L12 (P1/P2)","FIG00000141","icw(4);Ribosome_LSU_bacterial icw(1);LSU_ribosomal_proteins_cluster"]
["scaffold7|size59880","fig|6666666.156949.peg.4240","peg","scaffold7|size59880_19981_20586",19981,20586,"+","Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52)","FIG00487634","isu;RNA_methylation"]
["scaffold7|size59880","fig|6666666.156949.peg.4241","peg","scaffold7|size59880_20973_24413",20973,24413,"+","DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)","FIG00000156","icw(1);Mycobacterium_virulence_operon_involved_in_DNA_transcription icw(1);RNA_polymerase_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4242","peg","scaffold7|size59880_24475_28074",24475,28074,"+","DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)","FIG00000242","isu;Mycobacterium_virulence_operon_involved_in_DNA_transcription isu;RNA_polymerase_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4243","peg","scaffold7|size59880_28253_28501",28253,28501,"+","Firmicutes ribosomal L7Ae family protein","FIG00013968","isu;Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4244","peg","scaffold7|size59880_28615_29031",28615,29031,"+","SSU ribosomal protein S12p (S23e)","FIG00000203","isu;Ribosomal_protein_S12p_Asp_methylthiotransferase icw(3);Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)"]
["scaffold7|size59880","fig|6666666.156949.peg.4245","peg","scaffold7|size59880_29073_29543",29073,29543,"+","SSU ribosomal protein S7p (S5e)","FIG00000209","isu;Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)"]
["scaffold7|size59880","fig|6666666.156949.peg.4246","peg","scaffold7|size59880_29597_31675",29597,31675,"+","Translation elongation factor G","NA","isu;Tetracycline_resistance,_ribosome_protection_type icw(1);Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins) isu;Tetracycline_resistance,_ribosome_protection_type,_too isu;Universal_GTPases isu;Translation_elongation_factor_G_family isu;Translation_elongation_factors_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4247","peg","scaffold7|size59880_31795_32985",31795,32985,"+","Translation elongation factor Tu","FIG00000039","icw(2);Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins) icw(1);Universal_GTPases icw(1);Translation_elongation_factors_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4248","peg","scaffold7|size59880_33084_34040",33084,34040,"+","FIG01233798: hypothetical protein","FIG01233796","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4249","peg","scaffold7|size59880_34277_34585",34277,34585,"+","SSU ribosomal protein S10p (S20e)","FIG00001107","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4250","peg","scaffold7|size59880_34625_35254",34625,35254,"+","LSU ribosomal protein L3p (L3e)","FIG00001818","icw(6);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4251","peg","scaffold7|size59880_35282_35905",35282,35905,"+","LSU ribosomal protein L4p (L1e)","FIG00000263","icw(9);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4252","peg","scaffold7|size59880_35905_36192",35905,36192,"+","LSU ribosomal protein L23p (L23Ae)","FIG00000271","icw(1);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4253","peg","scaffold7|size59880_36224_37057",36224,37057,"+","LSU ribosomal protein L2p (L8e)","FIG00000223","icw(3);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4254","peg","scaffold7|size59880_37410_37751",37410,37751,"+","LSU ribosomal protein L22p (L17e)","FIG00000219","icw(10);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4255","peg","scaffold7|size59880_37755_38411",37755,38411,"+","SSU ribosomal protein S3p (S3e)","FIG00000218","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4256","peg","scaffold7|size59880_38413_38847",38413,38847,"+","LSU ribosomal protein L16p (L10e)","FIG00001132","icw(9);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4257","peg","scaffold7|size59880_38837_39037",38837,39037,"+","LSU ribosomal protein L29p (L35e)","FIG00015729","icw(7);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4258","peg","scaffold7|size59880_39060_39323",39060,39323,"+","SSU ribosomal protein S17p (S11e)","FIG00000181","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4259","peg","scaffold7|size59880_39364_39732",39364,39732,"+","LSU ribosomal protein L14p (L23e)","FIG00090781","icw(3);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4260","peg","scaffold7|size59880_39769_40080",39769,40080,"+","LSU ribosomal protein L24p (L26e)","FIG00000198","icw(6);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4261","peg","scaffold7|size59880_40107_40646",40107,40646,"+","LSU ribosomal protein L5p (L11e)","FIG00000174","icw(1);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4262","peg","scaffold7|size59880_40669_40854",40669,40854,"+","SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-dependent","FIG01306462","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4263","peg","scaffold7|size59880_40886_41284",40886,41284,"+","SSU ribosomal protein S8p (S15Ae)","FIG00000153","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4264","peg","scaffold7|size59880_41314_41853",41314,41853,"+","LSU ribosomal protein L6p (L9e)","FIG00001577","icw(4);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4265","peg","scaffold7|size59880_41886_42248",41886,42248,"+","LSU ribosomal protein L18p (L5e)","FIG00000200","isu;Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4266","peg","scaffold7|size59880_42267_42773",42267,42773,"+","SSU ribosomal protein S5p (S2e)","FIG00000155","isu;Ribosomal_protein_S5p_acylation"]
["scaffold7|size59880","fig|6666666.156949.peg.4267","peg","scaffold7|size59880_42787_42966",42787,42966,"+","LSU ribosomal protein L30p (L7e)","FIG00000409","icw(6);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4268","peg","scaffold7|size59880_42997_43437",42997,43437,"+","LSU ribosomal protein L15p (L27Ae)","FIG00000166","icw(8);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4269","peg","scaffold7|size59880_43439_44734",43439,44734,"+","Preprotein translocase secY subunit (TC 3.A.5.1.1)","FIG00937056","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4270","peg","scaffold7|size59880_44789_45442",44789,45442,"+","Adenylate kinase (EC 2.7.4.3)","FIG00000089","isu;Purine_conversions"]
["scaffold7|size59880","fig|6666666.156949.peg.4271","peg","scaffold7|size59880_45439_46185",45439,46185,"+","Methionine aminopeptidase (EC 3.4.11.18)","FIG00000036","idu(1);CBSS-312309.3.peg.1965 idu(1);Translation_termination_factors_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4272","peg","scaffold7|size59880_46245_46448",46245,46448,"+","C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds","FIG01230977","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4273","peg","scaffold7|size59880_46497_46715",46497,46715,"+","Translation initiation factor 1","FIG00000143","isu;Translation_initiation_factors_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4274","peg","scaffold7|size59880_46749_46862",46749,46862,"+","LSU ribosomal protein L36p","NA","icw(3);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4275","peg","scaffold7|size59880_46885_47250",46885,47250,"+","SSU ribosomal protein S13p (S18e)","FIG00000160","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4276","peg","scaffold7|size59880_47271_47666",47271,47666,"+","SSU ribosomal protein S11p (S14e)","FIG00055673","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4277","peg","scaffold7|size59880_47843_48787",47843,48787,"+","DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)","FIG00000140","isu;RNA_polymerase_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4278","peg","scaffold7|size59880_48865_49227",48865,49227,"+","LSU ribosomal protein L17p","NA","icw(2);Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4279","peg","scaffold7|size59880_49355_50200",49355,50200,"+","ATPase component of general energizing module of ECF transporters","FIG00013638","icw(2);ECF_class_transporters"]
["scaffold7|size59880","fig|6666666.156949.peg.4280","peg","scaffold7|size59880_50176_51045",50176,51045,"+","ATPase component of general energizing module of ECF transporters","FIG00013638","icw(2);ECF_class_transporters"]
["scaffold7|size59880","fig|6666666.156949.peg.4281","peg","scaffold7|size59880_51042_51839",51042,51839,"+","Transmembrane component of general energizing module of ECF transporters","FIG00024851","isu;ECF_class_transporters"]
["scaffold7|size59880","fig|6666666.156949.peg.4282","peg","scaffold7|size59880_51849_52592",51849,52592,"+","tRNA pseudouridine synthase A (EC 4.2.1.70)","NA","isu;tRNA_modification_Bacteria isu;tRNA_processing isu;RNA_pseudouridine_syntheses"]
["scaffold7|size59880","fig|6666666.156949.peg.4283","peg","scaffold7|size59880_52754_53191",52754,53191,"+","LSU ribosomal protein L13p (L13Ae)","FIG00000211","isu;Ribosome_LSU_bacterial"]
["scaffold7|size59880","fig|6666666.156949.peg.4284","peg","scaffold7|size59880_53212_53604",53212,53604,"+","SSU ribosomal protein S9p (S16e)","FIG00001110","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4285","peg","scaffold7|size59880_54068_54835",54068,54835,"+","FIG01227775: hypothetical protein","FIG01227774","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4286","peg","scaffold7|size59880_55021_55464",55021,55464,"+","FIG01226937: hypothetical protein","FIG01226936","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4287","peg","scaffold7|size59880_55524_56237",55524,56237,"+","Germination-specific N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), cell wall hydrolase CwlD","FIG00340359","isu;Spore_germination"]
["scaffold7|size59880","fig|6666666.156949.peg.4288","peg","scaffold7|size59880_56333_57391",56333,57391,"+","Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like","FIG00001492","isu;Scaffold_proteins_for_[4Fe-4S]_cluster_assembly_(MRP_family) isu;Iron-sulfur_cluster_assembly"]
["scaffold7|size59880","fig|6666666.156949.peg.4289","peg","scaffold7|size59880_57984_57427",57984,57427,"-","Spore germination protein GerD","FIG00013261","icw(1);Spore_germination"]
["scaffold7|size59880","fig|6666666.156949.peg.4290","peg","scaffold7|size59880_58022_58690",58022,58690,"+","KinB signaling pathway activation protein","FIG00013124","NA"]
["scaffold7|size59880","fig|6666666.156949.peg.4291","peg","scaffold7|size59880_59455_58691",59455,58691,"-","polysaccharide deacetylase, putative","FIG01289227","NA"]
["scaffold7|size59880","fig|6666666.156949.rna.103","rna","scaffold7|size59880_59803_59880",59803,59880,"+","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold81|size901","fig|6666666.156949.peg.4292","peg","scaffold81|size901_641_763",641,763,"+","hypothetical protein","NA","NA"]
["scaffold82|size899","fig|6666666.156949.peg.4293","peg","scaffold82|size899_364_245",364,245,"-","hypothetical protein","NA","NA"]
["scaffold86|size865","fig|6666666.156949.peg.4294","peg","scaffold86|size865_262_441",262,441,"+","Butyryl-CoA dehydrogenase (EC 1.3.99.2)","FIG00009149","NA"]
["scaffold86|size865","fig|6666666.156949.peg.4295","peg","scaffold86|size865_831_514",831,514,"-","hypothetical protein","NA","NA"]
["scaffold88|size851","fig|6666666.156949.peg.4296","peg","scaffold88|size851_19_720",19,720,"+","hypothetical protein","NA","NA"]
["scaffold89|size848","fig|6666666.156949.peg.4297","peg","scaffold89|size848_795_196",795,196,"-","Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)","FIG00000221","idu(1);Peptidoglycan_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.rna.104","rna","scaffold8|size55497_195_1",195,1,"-","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4298","peg","scaffold8|size55497_2002_503",2002,503,"-","Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)","FIG00000300","isu;tRNA_aminoacylation,_Lys"]
["scaffold8|size55497","fig|6666666.156949.peg.4299","peg","scaffold8|size55497_3095_2094",3095,2094,"-","tRNA dihydrouridine synthase B (EC 1.-.-.-)","FIG00000580","idu(1);tRNA_modification_Bacteria"]
["scaffold8|size55497","fig|6666666.156949.peg.4300","peg","scaffold8|size55497_3328_3119",3328,3119,"-","HigA protein (antitoxin to HigB)","FIG00010902","idu(1);Toxin-antitoxin_replicon_stabilization_systems"]
["scaffold8|size55497","fig|6666666.156949.peg.4301","peg","scaffold8|size55497_3783_3280",3783,3280,"-","2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)","FIG00000171","icw(1);Folate_biosynthesis_cluster icw(3);Folate_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4302","peg","scaffold8|size55497_4142_3780",4142,3780,"-","Dihydroneopterin aldolase (EC 4.1.2.25)","FIG00000373","icw(2);Folate_biosynthesis_cluster icw(4);Folate_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4303","peg","scaffold8|size55497_4992_4135",4992,4135,"-","Dihydropteroate synthase (EC 2.5.1.15)","FIG00000307","isu;Folate_biosynthesis_cluster icw(1);Folate_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4304","peg","scaffold8|size55497_5855_4974",5855,4974,"-","Aminodeoxychorismate lyase (EC 4.1.3.38)","FIG00000708","icw(1);Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. icw(1);Tryptophan_synthesis isu;Folate_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4305","peg","scaffold8|size55497_6439_5855",6439,5855,"-","Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) @ Anthranilate synthase, amidotransferase component (EC 4.1.3.27)","FIG01305088","isu;Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. icw(2);Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. isu;Tryptophan_synthesis icw(2);Tryptophan_synthesis icw(5);Folate_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4306","peg","scaffold8|size55497_7958_6453",7958,6453,"-","Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)","FIG00341164","icw(2);Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more. icw(2);Tryptophan_synthesis icw(2);Folate_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4307","peg","scaffold8|size55497_8958_8032",8958,8032,"-","Cysteine synthase (EC 2.5.1.47)","FIG00064110","idu(1);Cysteine_Biosynthesis idu(1);Methionine_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4308","peg","scaffold8|size55497_9927_9034",9927,9034,"-","Foldase protein PrsA precursor (EC 5.2.1.8)","FIG00049336","idu(1);Peptidyl-prolyl_cis-trans_isomerase idu(1);EcsAB_transporter_affecting_expression_and_secretion_of_secretory_preproteins"]
["scaffold8|size55497","fig|6666666.156949.peg.4309","peg","scaffold8|size55497_10849_9974",10849,9974,"-","Chaperonin (heat shock protein 33)","FIG00003751","isu;Streptococcus_pyogenes_recombinatorial_zone"]
["scaffold8|size55497","fig|6666666.156949.peg.4310","peg","scaffold8|size55497_11637_10861",11637,10861,"-","Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)","FIG00000695","isu;Coenzyme_A_Biosynthesis_cluster isu;Coenzyme_A_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4311","peg","scaffold8|size55497_13745_11832",13745,11832,"-","Cell division protein FtsH (EC 3.4.24.-)","FIG01120704","idu(1);Bacterial_Cell_Division icw(2);Cell_division-ribosomal_stress_proteins_cluster icw(2);Folate_biosynthesis_cluster"]
["scaffold8|size55497","fig|6666666.156949.peg.4312","peg","scaffold8|size55497_14385_13843",14385,13843,"-","Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)","FIG00000355","isu;Purine_conversions icw(1);Cell_division-ribosomal_stress_proteins_cluster icw(1);Folate_biosynthesis_cluster"]
["scaffold8|size55497","fig|6666666.156949.peg.4313","peg","scaffold8|size55497_15800_14382",15800,14382,"-","tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)","FIG00000257","isu;tRNA_modification_Bacteria isu;Cell_division-ribosomal_stress_proteins_cluster isu;Folate_biosynthesis_cluster isu;tRNA_processing"]
["scaffold8|size55497","fig|6666666.156949.peg.4314","peg","scaffold8|size55497_16920_15904",16920,15904,"-","Probable serine/threonine-protein kinase yabT (EC 2.7.11.1)","FIG01341050","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4315","peg","scaffold8|size55497_17623_16886",17623,16886,"-","FIG124152: hypothetical protein","FIG01349801","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4316","peg","scaffold8|size55497_20200_17708",20200,17708,"-","Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE)","FIG00004080","icw(1);Sporulation_Cluster isu;Sporulation_gene_orphans"]
["scaffold8|size55497","fig|6666666.156949.rna.105","rna","scaffold8|size55497_20462_20391",20462,20391,"-","tRNA-Glu-TTC","NA","NA"]
["scaffold8|size55497","fig|6666666.156949.rna.106","rna","scaffold8|size55497_20548_20475",20548,20475,"-","tRNA-Met-CAT","NA","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4317","peg","scaffold8|size55497_21103_20717",21103,20717,"-","RNA binding protein, contains ribosomal protein S1 domain","FIG00006700","isu;Cell_division-ribosomal_stress_proteins_cluster isu;Sporulation_Cluster"]
["scaffold8|size55497","fig|6666666.156949.peg.4318","peg","scaffold8|size55497_21561_21184",21561,21184,"-","Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage","FIG00001930","isu;Bacterial_Cell_Division icw(1);Cell_division-ribosomal_stress_proteins_cluster isu;Bacterial_Cytoskeleton icw(2);Sporulation_Cluster isu;Stationary_phase_repair_cluster"]
["scaffold8|size55497","fig|6666666.156949.peg.4319","peg","scaffold8|size55497_22214_21579",22214,21579,"-","Spore cortex biosynthesis protein","FIG00011952","icw(3);Cell_division-ribosomal_stress_proteins_cluster icw(7);Sporulation_Cluster"]
["scaffold8|size55497","fig|6666666.156949.peg.4320","peg","scaffold8|size55497_22513_22211",22513,22211,"-","FIG007421: forespore shell protein","FIG00007421","icw(4);Sporulation_Cluster"]
["scaffold8|size55497","fig|6666666.156949.peg.4321","peg","scaffold8|size55497_22852_22592",22852,22592,"-","Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)","NA","isu;Heat_shock_dnaK_gene_cluster_extended icw(2);Cell_division-ribosomal_stress_proteins_cluster icw(5);Sporulation_Cluster isu;DNA_replication_cluster_1"]
["scaffold8|size55497","fig|6666666.156949.peg.4322","peg","scaffold8|size55497_24324_22855",24324,22855,"-","possible tetrapyrrole methyltransferase domain / Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)","FIG01273675","isu;Nucleoside_triphosphate_pyrophosphohydrolase_MazG icw(4);Sporulation_Cluster icw(4);Sporulation_Cluster"]
["scaffold8|size55497","fig|6666666.156949.peg.4323","peg","scaffold8|size55497_25912_24314",25912,24314,"-","Stage V sporulation protein B","FIG00002090","idu(2);Sporulation_gene_orphans"]
["scaffold8|size55497","fig|6666666.156949.peg.4324","peg","scaffold8|size55497_26630_26094",26630,26094,"-","Stage V sporulation protein T, AbrB family transcriptional regulator (SpoVT)","FIG00007538","icw(5);Sporulation_Cluster icw(1);Sporulation_gene_orphans"]
["scaffold8|size55497","fig|6666666.156949.peg.4325","peg","scaffold8|size55497_30299_26766",30299,26766,"-","Transcription-repair coupling factor","FIG00067681","icw(2);Transcription_repair_cluster icw(1);Cell_division-ribosomal_stress_proteins_cluster isu;Sporulation_Cluster isu;DNA-replication isu;Transcription_factors_bacterial"]
["scaffold8|size55497","fig|6666666.156949.peg.4326","peg","scaffold8|size55497_30599_30369",30599,30369,"-","Hypothetical protein, FIG12300 and FIG043029 fams","FIG00012300","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4327","peg","scaffold8|size55497_31225_30659",31225,30659,"-","Peptidyl-tRNA hydrolase (EC 3.1.1.29)","FIG00000151","icw(2);Transcription_repair_cluster isu;Cell_division-ribosomal_stress_proteins_cluster icw(1);Sporulation-associated_proteins_with_broader_functions isu;Translation_termination_factors_bacterial"]
["scaffold8|size55497","fig|6666666.156949.peg.4328","peg","scaffold8|size55497_31946_31332",31946,31332,"-","LSU ribosomal protein L25p","FIG00001896","isu;Ribosome_LSU_bacterial icw(4);Transcription_repair_cluster"]
["scaffold8|size55497","fig|6666666.156949.peg.4329","peg","scaffold8|size55497_32984_32031",32984,32031,"-","Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)","FIG00096830","icw(1);Transcription_repair_cluster isu;Pentose_phosphate_pathway isu;A_Gammaproteobacteria_Cluster_Relating_to_Translation isu;De_Novo_Purine_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4330","peg","scaffold8|size55497_34377_33007",34377,33007,"-","N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)","FIG00000353","isu;Transcription_repair_cluster icw(3);Transcription_repair_cluster isu;UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis isu;UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis isu;Peptidoglycan_Biosynthesis isu;Peptidoglycan_Biosynthesis isu;Sialic_Acid_Metabolism isu;Sialic_Acid_Metabolism"]
["scaffold8|size55497","fig|6666666.156949.peg.4331","peg","scaffold8|size55497_34451_34573",34451,34573,"+","hypothetical protein","NA","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4332","peg","scaffold8|size55497_34815_34570",34815,34570,"-","Protein of unknown function identified by role in sporulation (SpoVG)","FIG00006706","isu;Sporulation-associated_proteins_with_broader_functions"]
["scaffold8|size55497","fig|6666666.156949.peg.4333","peg","scaffold8|size55497_35435_35058",35435,35058,"-","Bona fide RidA/YjgF/TdcF/RutC subgroup","FIG01304099","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4334","peg","scaffold8|size55497_36289_35432",36289,35432,"-","PurR: transcription regulator associated with purine metabolism","FIG00111686","icw(1);De_Novo_Purine_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4335","peg","scaffold8|size55497_37214_36345",37214,36345,"-","4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)","FIG00000377","isu;Isoprenoid_Biosynthesis icw(1);A_Gammaproteobacteria_Cluster_Relating_to_Translation isu;Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4336","peg","scaffold8|size55497_37526_37362",37526,37362,"-","small, acid-soluble spore protein","FIG01226713","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4337","peg","scaffold8|size55497_37967_37707",37967,37707,"-","Veg protein","FIG00628753","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4338","peg","scaffold8|size55497_39050_38178",39050,38178,"-","Sporulation-specific protease YabG","FIG00713865","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4339","peg","scaffold8|size55497_40089_39211",40089,39211,"-","SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)","FIG00000225","isu;RNA_methylation isu;Ribosome_biogenesis_bacterial"]
["scaffold8|size55497","fig|6666666.156949.peg.4340","peg","scaffold8|size55497_40642_40082",40642,40082,"-","Ribonuclease M5 (EC 3.1.26.8)","FIG00001477","icw(1);Ribosome_biogenesis_bacterial"]
["scaffold8|size55497","fig|6666666.156949.peg.4341","peg","scaffold8|size55497_42100_40787",42100,40787,"-","Cell wall-binding protein","FIG00615230","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4342","peg","scaffold8|size55497_43023_42256",43023,42256,"-","Putative deoxyribonuclease YcfH","FIG00000184","isu;YcfH"]
["scaffold8|size55497","fig|6666666.156949.peg.4343","peg","scaffold8|size55497_45097_43103",45097,43103,"-","Methionyl-tRNA synthetase (EC 6.1.1.10)","FIG01265301","idu(1);tRNA_aminoacylation,_Met idu(1);Scaffold_proteins_for_[4Fe-4S]_cluster_assembly_(MRP_family)"]
["scaffold8|size55497","fig|6666666.156949.peg.4344","peg","scaffold8|size55497_45598_45882",45598,45882,"+","Transition state regulatory protein AbrB","FIG00007753","isu;Poly-gamma-glutamate_biosynthesis"]
["scaffold8|size55497","fig|6666666.156949.peg.4345","peg","scaffold8|size55497_46809_45931",46809,45931,"-","rRNA small subunit methyltransferase I","FIG00000260","icw(2);Heat_shock_dnaK_gene_cluster_extended isu;16S_rRNA_modification_within_P_site_of_ribosome"]
["scaffold8|size55497","fig|6666666.156949.peg.4346","peg","scaffold8|size55497_47083_46784",47083,46784,"-","COG2827: putative endonuclease containing a URI domain","FIG00629828","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4347","peg","scaffold8|size55497_47813_47070",47813,47070,"-","tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223)","FIG00000648","isu;RNA_methylation"]
["scaffold8|size55497","fig|6666666.156949.peg.4348","peg","scaffold8|size55497_48231_47872",48231,47872,"-","DNA replication intiation control protein YabA","FIG00006663","isu;Heat_shock_dnaK_gene_cluster_extended"]
["scaffold8|size55497","fig|6666666.156949.peg.4349","peg","scaffold8|size55497_49073_48246",49073,48246,"-","Signal peptidase-like protein / Stage 0 sporulation protein YaaT","FIG01955888","icw(1);Heat_shock_dnaK_gene_cluster_extended"]
["scaffold8|size55497","fig|6666666.156949.peg.4350","peg","scaffold8|size55497_50065_49076",50065,49076,"-","DNA polymerase III delta prime subunit (EC 2.7.7.7)","FIG00057709","isu;DNA-replication"]
["scaffold8|size55497","fig|6666666.156949.peg.4351","peg","scaffold8|size55497_50517_50077",50517,50077,"-","DUF327 domain-containing protein","FIG00895412","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4352","peg","scaffold8|size55497_50859_50530",50859,50530,"-","protein from nitrogen regulatory protein P-II (GLNB) family, ortholog YAAQ B. subtilis","FIG00002224","isu;CBSS-393133.3.peg.2787"]
["scaffold8|size55497","fig|6666666.156949.peg.4353","peg","scaffold8|size55497_51571_50933",51571,50933,"-","Thymidylate kinase (EC 2.7.4.9)","FIG00000175","idu(1);pyrimidine_conversions icw(1);CBSS-393133.3.peg.2787"]
["scaffold8|size55497","fig|6666666.156949.peg.4354","peg","scaffold8|size55497_53010_51568",53010,51568,"-","Arginine decarboxylase (EC 4.1.1.19) / Lysine decarboxylase (EC 4.1.1.18)","FIG00002288","isu;Lysine_degradation idu(1);Arginine_and_Ornithine_Degradation idu(1);Polyamine_Metabolism"]
["scaffold8|size55497","fig|6666666.156949.peg.4355","peg","scaffold8|size55497_54251_53082",54251,53082,"-","Tellurite resistance protein","FIG01368698","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4356","peg","scaffold8|size55497_54884_54270",54884,54270,"-","5-bromo-4-chloroindolyl phosphate hydrolysis protein","FIG01307393","NA"]
["scaffold8|size55497","fig|6666666.156949.peg.4357","peg","scaffold8|size55497_55198_55004",55198,55004,"-","CsfB protein","NA","NA"]
["scaffold8|size55497","fig|6666666.156949.rna.107","rna","scaffold8|size55497_55492_55377",55492,55377,"-","5S RNA","NA","NA"]
["scaffold92|size819","fig|6666666.156949.peg.4358","peg","scaffold92|size819_754_479",754,479,"-","Methionyl-tRNA synthetase (EC 6.1.1.10)","NA","idu(1);tRNA_aminoacylation,_Met idu(1);Scaffold_proteins_for_[4Fe-4S]_cluster_assembly_(MRP_family)"]
["scaffold93|size815","fig|6666666.156949.peg.4359","peg","scaffold93|size815_459_722",459,722,"+","hypothetical protein","NA","NA"]
["scaffold94|size813","fig|6666666.156949.peg.4360","peg","scaffold94|size813_336_806",336,806,"+","large tegument protein","NA","NA"]
["scaffold95|size810","fig|6666666.156949.peg.4361","peg","scaffold95|size810_488_604",488,604,"+","hypothetical protein","NA","NA"]
["scaffold97|size807","fig|6666666.156949.peg.4362","peg","scaffold97|size807_575_156",575,156,"-","Rhodanese-related sulfurtransferase","NA","NA"]
["scaffold9|size15877","fig|6666666.156949.rna.108","rna","scaffold9|size15877_285_1",285,1,"-","Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA","NA","NA"]
["scaffold9|size15877","fig|6666666.156949.peg.4363","peg","scaffold9|size15877_792_529",792,529,"-","Inhibitor of pro-sigmaK processing BofA","FIG00015231","icw(2);DNA_processing_cluster"]
["scaffold9|size15877","fig|6666666.156949.peg.4364","peg","scaffold9|size15877_1083_859",1083,859,"-","FIG015094: hypothetical protein","FIG00006859","icw(3);DNA_processing_cluster"]
["scaffold9|size15877","fig|6666666.156949.peg.4365","peg","scaffold9|size15877_1697_1101",1697,1101,"-","Recombination protein RecR","FIG00000190","isu;DNA-replication icw(1);DNA_processing_cluster isu;DNA_repair,_bacterial_RecFOR_pathway"]
["scaffold9|size15877","fig|6666666.156949.peg.4366","peg","scaffold9|size15877_2035_1712",2035,1712,"-","FIG000557: hypothetical protein co-occurring with RecR","FIG00000557","isu;DNA_processing_cluster"]
["scaffold9|size15877","fig|6666666.156949.peg.4367","peg","scaffold9|size15877_3750_2059",3750,2059,"-","DNA polymerase III subunits gamma and tau (EC 2.7.7.7)","FIG00000414","icw(1);DNA-replication icw(4);DNA_processing_cluster"]
["scaffold9|size15877","fig|6666666.156949.peg.4368","peg","scaffold9|size15877_4712_4227",4712,4227,"-","tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)","FIG00000291","isu;tRNA_modification_Bacteria isu;tRNA_processing"]
["scaffold9|size15877","fig|6666666.156949.peg.4369","peg","scaffold9|size15877_4798_5343",4798,5343,"+","Nicotinamidase (EC 3.5.1.19)","FIG00067300","idu(1);NAD_and_NADP_cofactor_biosynthesis_global idu(1);Niacin-Choline_transport_and_metabolism idu(1);Redox-dependent_regulation_of_nucleus_processes"]
["scaffold9|size15877","fig|6666666.156949.peg.4370","peg","scaffold9|size15877_5413_6696",5413,6696,"+","Spore cortex-lytic enzyme, N-acetylglucosaminidase SleL (EC 3.2.1.-)","FIG00012814","isu;Spore_germination"]
["scaffold9|size15877","fig|6666666.156949.peg.4371","peg","scaffold9|size15877_6795_7418",6795,7418,"+","Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113)","NA","icw(1);Purine_conversions icw(1);Purine_conversions"]
["scaffold9|size15877","fig|6666666.156949.peg.4372","peg","scaffold9|size15877_7415_8068",7415,8068,"+","Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113)","NA","icw(1);Purine_conversions icw(1);Purine_conversions"]
["scaffold9|size15877","fig|6666666.156949.rna.109","rna","scaffold9|size15877_8272_8183",8272,8183,"-","tRNA-Ser-TGA","NA","NA"]
["scaffold9|size15877","fig|6666666.156949.peg.4373","peg","scaffold9|size15877_9741_8407",9741,8407,"-","Seryl-tRNA synthetase (EC 6.1.1.11)","FIG00000121","isu;Glycine_and_Serine_Utilization isu;tRNA_aminoacylation,_Ser"]
["scaffold9|size15877","fig|6666666.156949.peg.4374","peg","scaffold9|size15877_10596_10006",10596,10006,"-","Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)","FIG00001203","icw(1);Pyridoxin_(Vitamin_B6)_Biosynthesis"]
["scaffold9|size15877","fig|6666666.156949.peg.4375","peg","scaffold9|size15877_11502_10618",11502,10618,"-","Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)","FIG00021445","isu;Pyridoxin_(Vitamin_B6)_Biosynthesis"]
["scaffold9|size15877","fig|6666666.156949.peg.4376","peg","scaffold9|size15877_12955_11699",12955,11699,"-","D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)","FIG00561498","idu(5);Murein_Hydrolases idu(5);Peptidoglycan_Biosynthesis idu(5);CBSS-84588.1.peg.1247 idu(5);Metallocarboxypeptidases_(EC_3.4.17.-)"]
["scaffold9|size15877","fig|6666666.156949.peg.4377","peg","scaffold9|size15877_14649_13183",14649,13183,"-","Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain","NA","idu(1);Purine_conversions idu(1);Purine_salvage_cluster"]
["scaffold9|size15877","fig|6666666.156949.peg.4378","peg","scaffold9|size15877_14770_15717",14770,15717,"+","FIG01227654: hypothetical protein","FIG01227652","NA"]
["scaffold9|size15877","fig|6666666.156949.rna.110","rna","scaffold9|size15877_15872_15757",15872,15757,"-","5S RNA","NA","NA"]

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