======================================================== RUNLOG FINAL - HEATMAPS PAR MILIEU ======================================================== Date/heure de fin : 2026-03-31 15:24:31 Working directory : C:/Users/2025tm006/Desktop/Publie extraction chimique mycotox/Data treatment MT/Heatmap globale abondance -------------------------------------------------------- FICHIERS D'ENTREE -------------------------------------------------------- Bilan_area_media.xlsx One_factor_extraction_by_medium_results_noQC_MT.xlsx PCA_by_medium_only_outputs.xlsx -------------------------------------------------------- FEUILLES DETECTEES -------------------------------------------------------- data : CMA, CZA, MEA, PDA lm_results : CMA_stats, CMA_intensity, CMA_design, CZA_stats, CZA_intensity, CZA_design, MEA_stats, MEA_intensity, MEA_design, PDA_stats, PDA_intensity, PDA_design, run_summary, run_parameters multiv_results : run_summary, sc_CMA_wQC, ld_CMA_wQC, vr_CMA_wQC, sc_CMA_noQC, ld_CMA_noQC, vr_CMA_noQC, sc_CZA_wQC, ld_CZA_wQC, vr_CZA_wQC, sc_CZA_noQC, ld_CZA_noQC, vr_CZA_noQC, sc_MEA_wQC, ld_MEA_wQC, vr_MEA_wQC, sc_MEA_noQC, ld_MEA_noQC, vr_MEA_noQC, sc_PDA_wQC, ld_PDA_wQC, vr_PDA_wQC, sc_PDA_noQC, ld_PDA_noQC, vr_PDA_noQC -------------------------------------------------------- RESUME DES OBJETS NETTOYES -------------------------------------------------------- Milieu : CMA n_features : 278 n_samples_metadata : 14 n_rows_long : 3892 n_rows_wide : 14 n_cols_wide : 279 contrasts : 3 sample_type : QC Sample 5 9 extraction : QC S1 S2 S3 5 3 3 3 Milieu : CZA n_features : 232 n_samples_metadata : 14 n_rows_long : 3248 n_rows_wide : 14 n_cols_wide : 233 contrasts : 3 sample_type : QC Sample 5 9 extraction : QC S1 S2 S3 5 3 3 3 Milieu : MEA n_features : 283 n_samples_metadata : 14 n_rows_long : 3962 n_rows_wide : 14 n_cols_wide : 284 contrasts : 3 sample_type : QC Sample 5 9 extraction : QC S1 S2 S3 5 3 3 3 Milieu : PDA n_features : 199 n_samples_metadata : 14 n_rows_long : 2786 n_rows_wide : 14 n_cols_wide : 200 contrasts : 3 sample_type : QC Sample 5 9 extraction : QC S1 S2 S3 5 3 3 3 -------------------------------------------------------- PARAMETRES HEATMAPS -------------------------------------------------------- Transformation log : log10(area + 1) Centre-reduction par ligne : oui si scale_rows = TRUE Retrait des lignes nulles : oui si remove_all_zero = TRUE Palette : RdBu inversée (RColorBrewer) -------------------------------------------------------- FICHIERS DE SORTIE -------------------------------------------------------- heatmaps_par_milieu_avecQC.pdf : OK heatmaps_par_milieu_sansQC.pdf : OK -------------------------------------------------------- SESSION INFO -------------------------------------------------------- R version 4.5.3 (2026-03-11 ucrt) Platform: x86_64-w64-mingw32/x64 Running under: Windows 11 x64 (build 26200) Matrix products: default LAPACK version 3.12.1 locale: [1] LC_COLLATE=French_France.utf8 LC_CTYPE=French_France.utf8 LC_MONETARY=French_France.utf8 [4] LC_NUMERIC=C LC_TIME=French_France.utf8 time zone: Europe/Paris tzcode source: internal attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] RColorBrewer_1.1-3 gplots_3.3.0 rvg_0.4.1 officer_0.7.3 ggplot2_4.0.2 stringr_1.6.0 [7] tibble_3.3.0 purrr_1.2.1 tidyr_1.3.2 dplyr_1.1.4 loaded via a namespace (and not attached): [1] utf8_1.2.6 generics_0.1.4 fontLiberation_0.1.0 bitops_1.0-9 xml2_1.5.2 [6] KernSmooth_2.23-26 gtools_3.9.5 stringi_1.8.7 digest_0.6.37 magrittr_2.0.3 [11] caTools_1.18.3 grid_4.5.3 fastmap_1.2.0 cellranger_1.1.0 zip_2.3.3 [16] scales_1.4.0 fontBitstreamVera_0.1.1 textshaping_1.0.5 cli_3.6.5 rlang_1.1.6 [21] fontquiver_0.2.1 withr_3.0.2 gdtools_0.5.0 tools_4.5.3 uuid_1.2-2 [26] vctrs_0.6.5 R6_2.6.1 lifecycle_1.0.5 ragg_1.5.1 pkgconfig_2.0.3 [31] pillar_1.11.1 gtable_0.3.6 glue_1.8.0 Rcpp_1.1.0 systemfonts_1.3.2 [36] tidyselect_1.2.1 rstudioapi_0.18.0 farver_2.1.2 htmltools_0.5.8.1 labeling_0.4.3 [41] compiler_4.5.3 S7_0.2.1 askpass_1.2.1 readxl_1.4.5 openssl_2.3.5