{"text_format":"3","workbook":"xls","n_sheets":1,"sheets":["Hormonal genes in Mock vs_TSA"],"not_rendered":{"external_links":1},"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Hormonal genes in Mock vs_TSA","index":0,"n_rows":95,"n_cols":28,"rows_kept":95,"flags":["formulas_cached_only"]}
["Gene ID","Mock-1_Count","Mock-2_Count","Mock-3_Count","TSA5-1_Count","TSA5-2_Count","TSA5-3_Count","Mock-1_FPKM","Mock-2_FPKM","Mock-3_FPKM","TSA5-1_FPKM","TSA5-2_FPKM","TSA5-3_FPKM","FDR","log2FC","regulated","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KEGG_pathway_annotation","KOG_class","KOG_class_annotation","Pfam_annotation","Swiss-Prot_annotation","eggNOG_class","eggNOG_class_annotation","NR_annotation"]
["Gossypium_hirsutum_newGene_23351",566,840,609,327,267,392,21.32724,33.910622,23.773363,11.083241,11.093106,12.94367,0.002136731,-1.034761819,"down","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14484|4.70695e-105|gra:105770098|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA27-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD24601 [Gossypium barbadense] "]
["Gossypium_hirsutum_newGene_7580",323,70,232,686,393,685,2.502697,0.578424,1.861806,4.793396,3.36594,4.65044,0.000487747,1.496559838,"up","[HJ]","Coenzyme transport and metabolism;; Translation, ribosomal structure and biogenesis","--","K14487|0|gra:105794935|K14487 auxin responsive GH3 gene family | (RefSeq) indole-3-acetic acid-amido synthetase GH3.6-like","Plant hormone signal transduction (ko04075)","--","--","GH3 auxin-responsive promoter","Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana OX=3702 GN=GH3.6 PE=1 SV=1","S","Function unknown","PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Gossypium hirsutum]"]
["evm.TU.Gh_A01G0153",2,7,0,98,120,68,0.031743,0.10483,0,1.497088,2.2018,1.041124,{"v":1.39e-08,"d":"1.39E-08"},5.020410369,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: response to stress (GO:0006950);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to auxin (GO:0009733);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: response to salicylic acid (GO:0009751);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: response to other organism (GO:0051707);; Biological Process: regulation of jasmonic acid mediated signaling pathway (GO:2000022);; ","K13464|1.80999e-110|gra:105774358|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 9-like","Plant hormone signal transduction (ko04075)","--","--","Divergent CCT motif;; tify domain","Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 9 [Gossypium arboreum] "]
["evm.TU.Gh_A01G0218",133,77,102,237,161,332,2.782777,1.573934,1.821227,4.793135,3.079638,5.526609,0.002679019,1.216395496,"up","[TK]","Signal transduction mechanisms;; Transcription","Molecular Function: phosphorelay response regulator activity (GO:0000156);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: regulation of root meristem growth (GO:0010082);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: leaf senescence (GO:0010150);; Biological Process: regulation of chlorophyll biosynthetic process (GO:0010380);; Biological Process: regulation of gene expression (GO:0010468);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: regulation of anthocyanin metabolic process (GO:0031537);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: positive regulation of short-day photoperiodism, flowering (GO:0048576);; Biological Process: regulation of shoot system development (GO:0048831);; Biological Process: primary root development (GO:0080022);; Biological Process: regulation of seed growth (GO:0080113);; ","K14491|1.59495e-63|gra:105775279|K14491 two-component response regulator ARR-B family | (RefSeq) two-component response regulator ARR2-like","Plant hormone signal transduction (ko04075)","[K]","Transcription","Response regulator receiver domain","Two-component response regulator ARR2 OS=Arabidopsis thaliana OX=3702 GN=ARR2 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: two-component response regulator ARR2-like [Gossypium arboreum] "]
["evm.TU.Gh_A01G0972",53,9,28,131,101,108,1.085709,0.194926,0.582292,2.431182,2.292132,1.935519,0.00027014,1.942672277,"up","--","--","Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: negative regulation of brassinosteroid biosynthetic process (GO:0010423);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K14499|1.07819e-143|gra:105785171|K14499 BRI1 kinase inhibitor 1 | (RefSeq) BRI1 kinase inhibitor 1-like","Plant hormone signal transduction (ko04075)","--","--","--","BRI1 kinase inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=BKI1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: BRI1 kinase inhibitor 1-like [Gossypium hirsutum]"]
["evm.TU.Gh_A01G1374",144,244,118,45,19,39,1.18195,2.150515,1.004628,0.331232,0.172174,0.281851,0.002107195,-2.32459372,"down","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: establishment of planar polarity (GO:0001736);; Biological Process: amino acid transmembrane transport (GO:0003333);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: syncytium formation (GO:0006949);; Biological Process: cell adhesion (GO:0007155);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to ethylene (GO:0009723);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: positive gravitropism (GO:0009958);; Cellular Component: cell surface (GO:0009986);; Molecular Function: auxin binding (GO:0010011);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: response to far red light (GO:0010218);; Biological Process: lateral root formation (GO:0010311);; Molecular Function: auxin influx transmembrane transporter activity (GO:0010328);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Molecular Function: symporter activity (GO:0015293);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: actin nucleation (GO:0045010);; Biological Process: root hair elongation (GO:0048767);; Biological Process: root cap development (GO:0048829);; Biological Process: auxin influx (GO:0060919);; Biological Process: cell wall organization (GO:0071555);; ","K13946|0|gra:105785891|K13946 auxin influx carrier (AUX1 LAX family) | (RefSeq) auxin transporter-like protein 5","Plant hormone signal transduction (ko04075)","[E]","Amino acid transport and metabolism","Transmembrane amino acid transporter protein","Auxin transporter-like protein 5 OS=Medicago truncatula OX=3880 GN=LAX5 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: auxin transporter-like protein 5 [Gossypium hirsutum]"]
["evm.TU.Gh_A01G1955",797,614,912,1981,1310,2332,5.568852,4.616494,6.50586,12.215487,9.961537,13.974535,{"v":1.73e-06,"d":"1.73E-06"},1.266851065,"up","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: establishment of planar polarity (GO:0001736);; Biological Process: amino acid transmembrane transport (GO:0003333);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: syncytium formation (GO:0006949);; Biological Process: cell adhesion (GO:0007155);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: positive gravitropism (GO:0009958);; Cellular Component: cell surface (GO:0009986);; Molecular Function: auxin binding (GO:0010011);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: response to far red light (GO:0010218);; Biological Process: lateral root formation (GO:0010311);; Molecular Function: auxin influx transmembrane transporter activity (GO:0010328);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Molecular Function: symporter activity (GO:0015293);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: actin nucleation (GO:0045010);; Biological Process: root hair elongation (GO:0048767);; Biological Process: root cap development (GO:0048829);; Biological Process: auxin influx (GO:0060919);; Biological Process: cell wall organization (GO:0071555);; ","K13946|0|gra:105786542|K13946 auxin influx carrier (AUX1 LAX family) | (RefSeq) auxin transporter-like protein 2","Plant hormone signal transduction (ko04075)","[E]","Amino acid transport and metabolism","Transmembrane amino acid transporter protein","Auxin transporter-like protein 2 OS=Medicago truncatula OX=3880 GN=LAX2 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: auxin transporter-like protein 2 [Gossypium hirsutum]"]
["evm.TU.Gh_A02G0340",1153,1041,1248,408,409,332,34.76329,33.595543,38.974907,11.069333,13.599767,8.760777,{"v":1.46e-16,"d":"1.46E-16"},-1.555058593,"down","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to external stimulus (GO:0009605);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Molecular Function: phosphatase activity (GO:0016791);; Biological Process: cell differentiation (GO:0030154);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: lateral root development (GO:0048527);; Biological Process: regulation of biological quality (GO:0065008);; ","K14484|1.1747e-134|gra:105796692|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA4-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1","K","Transcription","PREDICTED: auxin-responsive protein IAA4-like [Gossypium hirsutum] "]
["evm.TU.Gh_A02G0341",400,282,462,157,165,188,5.476742,4.13447,6.558391,1.925936,2.484222,2.25162,0.000384601,-1.147195087,"down","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: regulation of carbohydrate metabolic process (GO:0006109);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Biological Process: response to wounding (GO:0009611);; Biological Process: gravitropism (GO:0009630);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: flower development (GO:0009908);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: lateral root morphogenesis (GO:0010102);; Biological Process: lateral root formation (GO:0010311);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cell wall organization (GO:0071555);; Biological Process: response to karrikin (GO:0080167);; ","K14484|3.42781e-154|gra:105796694|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA14-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-responsive protein IAA14 OS=Arabidopsis thaliana OX=3702 GN=IAA14 PE=1 SV=2","K","Transcription","PREDICTED: auxin-responsive protein IAA14-like [Gossypium arboreum]"]
["evm.TU.Gh_A02G0775",253,235,227,36,57,77,4.220569,4.195641,3.923361,0.539279,1.047977,1.114169,{"v":1.05e-07,"d":"1.05E-07"},-2.055791324,"down","--","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: meiotic chromosome segregation (GO:0045132);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: defense response to fungus (GO:0050832);; ","K14431|0|gra:105797202|K14431 transcription factor TGA | (RefSeq) transcription factor TGA3-like","Plant hormone signal transduction (ko04075)","--","--","Seed dormancy control;; bZIP transcription factor;; Basic region leucine zipper","Transcription factor TGA7 OS=Arabidopsis thaliana OX=3702 GN=TGA7 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TGA3-like isoform X1 [Gossypium hirsutum] "]
["evm.TU.Gh_A02G1156",161,178,96,59,32,43,2.492996,2.535802,1.195161,0.810827,0.471665,0.494498,0.000544624,-1.705116822,"down","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: cell fate specification (GO:0001708);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: regulation of carbohydrate metabolic process (GO:0006109);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: regulation of translation (GO:0006417);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: virus induced gene silencing (GO:0009616);; Biological Process: gravitropism (GO:0009630);; Biological Process: response to salt stress (GO:0009651);; Biological Process: gibberellin biosynthetic process (GO:0009686);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: flower development (GO:0009908);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: vegetative phase change (GO:0010050);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: lateral root formation (GO:0010311);; Biological Process: regulation of gene expression (GO:0010468);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: floral whorl development (GO:0048438);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cell wall organization (GO:0071555);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; ","K14484|3.74821e-162|gra:105788050|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA27-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1","K","Transcription","Auxin-responsive IAA27 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_A03G1341",31,23,25,129,168,168,0.900034,0.688134,0.748547,3.368787,5.374446,4.276675,{"v":6.81e-08,"d":"6.81E-08"},2.586344947,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: response to stress (GO:0006950);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to auxin (GO:0009733);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: response to salicylic acid (GO:0009751);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: shoot system development (GO:0048367);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: response to other organism (GO:0051707);; Biological Process: regulation of jasmonic acid mediated signaling pathway (GO:2000022);; ","K13464|2.26975e-128|gra:105794807|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 9","Plant hormone signal transduction (ko04075)","--","--","Divergent CCT motif;; tify domain","Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 9 [Gossypium raimondii] "]
["evm.TU.Gh_A03G1766",34,32,20,182,141,188,1.774805,1.780076,1.078515,8.557885,8.135903,8.591499,{"v":2.02e-08,"d":"2.02E-08"},2.574838541,"up","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14488|5.18737e-73|gra:105795368|K14488 SAUR family protein | (RefSeq) auxin-induced protein 15A-like","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1","S","Function unknown","PREDICTED: auxin-induced protein 15A [Gossypium hirsutum] "]
["evm.TU.Gh_A03G1804",68,173,161,24,24,29,0.737984,2.123325,1.886977,0.228416,0.280819,0.276315,0.003173349,-2.380359501,"down","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: establishment of planar polarity (GO:0001736);; Biological Process: amino acid transmembrane transport (GO:0003333);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: syncytium formation (GO:0006949);; Biological Process: cell adhesion (GO:0007155);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to ethylene (GO:0009723);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: positive gravitropism (GO:0009958);; Cellular Component: cell surface (GO:0009986);; Molecular Function: auxin binding (GO:0010011);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: response to far red light (GO:0010218);; Biological Process: lateral root formation (GO:0010311);; Molecular Function: auxin influx transmembrane transporter activity (GO:0010328);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Molecular Function: symporter activity (GO:0015293);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: actin nucleation (GO:0045010);; Biological Process: root hair elongation (GO:0048767);; Biological Process: root cap development (GO:0048829);; Biological Process: auxin influx (GO:0060919);; Biological Process: cell wall organization (GO:0071555);; ","K13946|0|gra:105795397|K13946 auxin influx carrier (AUX1 LAX family) | (RefSeq) auxin transporter-like protein 2","Plant hormone signal transduction (ko04075)","[E]","Amino acid transport and metabolism","Transmembrane amino acid transporter protein","Auxin transporter-like protein 5 OS=Medicago truncatula OX=3880 GN=LAX5 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: auxin transporter-like protein 2 [Gossypium arboreum]"]
["evm.TU.Gh_A03G1990",205,78,154,326,250,360,7.306333,2.984075,5.692629,10.472489,9.852363,11.269771,0.001008938,1.10733728,"up","--","--","--","K14488|2.1914e-102|gra:105789229|K14488 SAUR family protein | (RefSeq) uncharacterized LOC105789229","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1","S","Function unknown","PREDICTED: auxin-induced protein X10A-like [Gossypium hirsutum] "]
["evm.TU.Gh_A05G0260",198,97,112,467,395,538,4.714818,2.466987,2.756979,10.042598,10.409386,11.255522,{"v":3.32e-10,"d":"3.32E-10"},1.793961738,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: pollen development (GO:0009555);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to auxin (GO:0009733);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: flower development (GO:0009908);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: organic substance biosynthetic process (GO:1901576);; Biological Process: regulation of jasmonic acid mediated signaling pathway (GO:2000022);; ","K13464|2.9897e-157|gra:105769636|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 10A-like","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 10A OS=Arabidopsis thaliana OX=3702 GN=TIFY10A PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 10A-like [Gossypium arboreum] "]
["evm.TU.Gh_A05G0308",400,491,426,196,219,229,3.752789,5.070478,4.214662,1.630352,2.230634,1.843725,0.000367281,-1.013731704,"down","[T]","Signal transduction mechanisms","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: negative regulation of protein kinase activity (GO:0006469);; Biological Process: protein dephosphorylation (GO:0006470);; Cellular Component: protein serine/threonine phosphatase complex (GO:0008287);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to symbiotic fungus (GO:0009610);; Biological Process: negative regulation of abscisic acid-activated signaling pathway (GO:0009788);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: photoinhibition (GO:0010205);; Cellular Component: membrane (GO:0016020);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: shoot system development (GO:0048367);; Biological Process: animal organ development (GO:0048513);; Biological Process: positive regulation of biological process (GO:0048518);; Biological Process: regulation of reproductive process (GO:2000241);; ","K14497|0|gra:105767945|K14497 protein phosphatase 2C [EC:3.1.3.16] | (RefSeq) probable protein phosphatase 2C 53","Plant hormone signal transduction (ko04075)","[T]","Signal transduction mechanisms","Protein phosphatase 2C","Protein phosphatase 2C 16 OS=Arabidopsis thaliana OX=3702 GN=HAB1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: probable protein phosphatase 2C 53 [Gossypium hirsutum] "]
["evm.TU.Gh_A05G0356",110,209,134,44,55,53,0.993723,2.019778,1.251589,0.356566,0.543054,0.419908,0.00743537,-1.55536067,"down","--","--","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: regulation of carbohydrate metabolic process (GO:0006109);; Biological Process: regulation of translation (GO:0006417);; Biological Process: response to stress (GO:0006950);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to auxin (GO:0009733);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: flower development (GO:0009908);; Biological Process: lateral root formation (GO:0010311);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell differentiation (GO:0030154);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: response to karrikin (GO:0080167);; Biological Process: response to oxygen-containing compound (GO:1901700);; ","K14484|0|gra:105771085|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA6-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA7 PE=2 SV=1","K","Transcription","PREDICTED: auxin-responsive protein IAA6-like [Gossypium hirsutum]"]
["evm.TU.Gh_A05G1076",1597,2203,2075,850,792,734,18.101114,26.806093,24.412384,8.701177,9.929021,7.292397,{"v":4.69e-07,"d":"4.69E-07"},-1.289018878,"down","--","--","Biological Process: cell fate specification (GO:0001708);; Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: regulation of carbohydrate metabolic process (GO:0006109);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: regulation of translation (GO:0006417);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: pattern specification process (GO:0007389);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: gravitropism (GO:0009630);; Biological Process: gibberellin biosynthetic process (GO:0009686);; Biological Process: response to auxin (GO:0009733);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: lateral root formation (GO:0010311);; Biological Process: regulation of gene expression (GO:0010468);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: cell growth (GO:0016049);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: floral whorl development (GO:0048438);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; ","K14484|0|gra:105770017|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA27-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1","K","Transcription","hypothetical protein B456_009G135900 [Gossypium raimondii]"]
["evm.TU.Gh_A05G1155",375,234,266,611,519,739,3.914552,2.633785,2.899946,5.724805,5.992132,6.716441,{"v":5.3e-06,"d":"5.30E-06"},1.102176432,"up","--","--","Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: defense response (GO:0006952);; Biological Process: multicellular organism development (GO:0007275);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: organic substance biosynthetic process (GO:1901576);; Biological Process: cellular response to oxygen-containing compound (GO:1901701);; ","K13464|9.80144e-156|gra:105768721|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 11B-like","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 11B OS=Arabidopsis thaliana OX=3702 GN=TIFY11B PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 11B-like [Gossypium hirsutum]"]
["evm.TU.Gh_A05G1607",153,161,193,45,50,110,0.900591,0.976914,1.042663,0.166634,0.257765,0.410806,0.003616681,-1.318973419,"down","--","--","Biological Process: regionalization (GO:0003002);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: signal transduction (GO:0007165);; Cellular Component: plastid (GO:0009536);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: flower development (GO:0009908);; Biological Process: posttranscriptional regulation of gene expression (GO:0010608);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cellular protein metabolic process (GO:0044267);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: meristem development (GO:0048507);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: phyllome development (GO:0048827);; ","K14486|0|gra:105769031|K14486 auxin response factor | (RefSeq) auxin response factor 5","Plant hormone signal transduction (ko04075)","--","--","Auxin response factor;; B3 DNA binding domain;; AUX/IAA family","Auxin response factor 5 OS=Arabidopsis thaliana OX=3702 GN=ARF5 PE=1 SV=3","K","Transcription","PREDICTED: auxin response factor 5-like isoform X2 [Gossypium hirsutum]"]
["evm.TU.Gh_A05G1922",211,136,194,443,251,499,3.30524,2.338567,3.184479,6.444562,4.403724,7.050384,0.001118945,1.128057274,"up","[T]","Signal transduction mechanisms","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose metabolic process (GO:0005985);; Biological Process: glycolytic process (GO:0006096);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: water transport (GO:0006833);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to gibberellin (GO:0009739);; Biological Process: positive regulation of abscisic acid-activated signaling pathway (GO:0009789);; Molecular Function: calcium-dependent protein serine/threonine kinase activity (GO:0009931);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: triglyceride biosynthetic process (GO:0019432);; Biological Process: growth (GO:0040007);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: regulation of circadian rhythm (GO:0042752);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: leaf development (GO:0048366);; Biological Process: lateral root development (GO:0048527);; Molecular Function: phosphatidic acid binding (GO:0070300);; Biological Process: primary root development (GO:0080022);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of reactive oxygen species metabolic process (GO:2000377);; ","K14498|0|gra:105771042|K14498 serine/threonine-protein kinase SRK2 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase SAPK2-like","Plant hormone signal transduction (ko04075)","[T]","Signal transduction mechanisms","Protein kinase domain;; Protein tyrosine kinase","Serine/threonine-protein kinase SAPK1 OS=Oryza sativa subsp. japonica OX=39947 GN=SAPK1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein kinase SAPK2-like [Gossypium hirsutum]"]
["evm.TU.Gh_A05G3362",142,58,82,273,195,340,1.415022,0.66956,1.163974,3.133856,2.027766,3.539455,{"v":2.22e-05,"d":"2.22E-05"},1.519358798,"up","[R]","General function prediction only","Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: membrane fusion (GO:0006944);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to chitin (GO:0010200);; Biological Process: auxin homeostasis (GO:0010252);; Molecular Function: indole-3-acetic acid amido synthetase activity (GO:0010279);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: detection of fungus (GO:0016046);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: benzoate metabolic process (GO:0018874);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: positive regulation of plant-type hypersensitive response (GO:0034052);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: interspecies interaction between organisms (GO:0044419);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: 4-aminobenzoate amino acid synthetase activity (GO:0052625);; Molecular Function: benzoate amino acid synthetase activity (GO:0052626);; Molecular Function: vanillate amino acid synthetase activity (GO:0052627);; Molecular Function: 4-hydroxybenzoate amino acid synthetase activity (GO:0052628);; Biological Process: cellular response to hypoxia (GO:0071456);; Biological Process: positive regulation of camalexin biosynthetic process (GO:1901183);; ","K14487|0|gra:105779486|K14487 auxin responsive GH3 gene family | (RefSeq) indole-3-acetic acid-amido synthetase GH3.17-like","Plant hormone signal transduction (ko04075)","--","--","GH3 auxin-responsive promoter","Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana OX=3702 GN=GH3.17 PE=1 SV=1","S","Function unknown","PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like [Gossypium arboreum]"]
["evm.TU.Gh_A06G0351",582,368,567,1249,822,1525,5.402947,3.61009,5.451862,10.813407,8.404578,12.993157,{"v":4.31e-05,"d":"4.31E-05"},1.237116908,"up","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: establishment of planar polarity (GO:0001736);; Biological Process: amino acid transmembrane transport (GO:0003333);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: syncytium formation (GO:0006949);; Biological Process: cell adhesion (GO:0007155);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: positive gravitropism (GO:0009958);; Cellular Component: cell surface (GO:0009986);; Molecular Function: auxin binding (GO:0010011);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: response to far red light (GO:0010218);; Biological Process: lateral root formation (GO:0010311);; Molecular Function: auxin influx transmembrane transporter activity (GO:0010328);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Molecular Function: symporter activity (GO:0015293);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: actin nucleation (GO:0045010);; Biological Process: root hair elongation (GO:0048767);; Biological Process: root cap development (GO:0048829);; Biological Process: auxin influx (GO:0060919);; Biological Process: cell wall organization (GO:0071555);; ","K13946|0|gra:105773444|K13946 auxin influx carrier (AUX1 LAX family) | (RefSeq) auxin transporter-like protein 3","Plant hormone signal transduction (ko04075)","[E]","Amino acid transport and metabolism","Transmembrane amino acid transporter protein","Auxin transporter-like protein 3 OS=Medicago truncatula OX=3880 GN=LAX3 PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein B456_010G048200 [Gossypium raimondii]"]
["evm.TU.Gh_A06G1418",9,7,64,129,90,210,0.239993,0.172452,1.755479,3.086282,2.650595,4.900514,0.001111638,2.401823505,"up","--","--","Molecular Function: protein phosphatase inhibitor activity (GO:0004864);; Molecular Function: receptor activity (GO:0004872);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: fatty acid catabolic process (GO:0009062);; Cellular Component: chloroplast (GO:0009507);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: positive regulation of abscisic acid-activated signaling pathway (GO:0009789);; Biological Process: regulation of seed germination (GO:0010029);; Molecular Function: abscisic acid binding (GO:0010427);; Cellular Component: membrane (GO:0016020);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of protein serine/threonine phosphatase activity (GO:0080163);; ","K14496|6.47448e-138|gra:105772893|K14496 abscisic acid receptor PYR/PYL family | (RefSeq) abscisic acid receptor PYL4-like","Plant hormone signal transduction (ko04075)","--","--","Polyketide cyclase / dehydrase and lipid transport;; Polyketide cyclase / dehydrase and lipid transport;; Pathogenesis-related protein Bet v I family","Abscisic acid receptor PYL6 OS=Arabidopsis thaliana OX=3702 GN=PYL6 PE=1 SV=1","S","Function unknown","PREDICTED: abscisic acid receptor PYL4-like [Gossypium arboreum]"]
["evm.TU.Gh_A06G1644",93,81,71,0,8,7,3.143246,2.741628,2.259364,0,0.259487,0.109137,{"v":5.35e-09,"d":"5.35E-09"},-3.96054511,"down","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: response to stress (GO:0006950);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to brassinosteroid (GO:0009741);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: lateral root development (GO:0048527);; ","K14484|1.07268e-60|gra:105771476|K14484 auxin-responsive protein IAA | (RefSeq) auxin-induced protein AUX22-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1","K","Transcription","PREDICTED: auxin-induced protein AUX22-like [Gossypium arboreum]"]
["evm.TU.Gh_A07G1202",616,603,656,262,243,309,4.656007,4.881649,4.937422,2.287459,2.198443,2.038061,{"v":8.47e-07,"d":"8.47E-07"},-1.19522335,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cellular amino acid metabolic process (GO:0006520);; Biological Process: heme biosynthetic process (GO:0006783);; Biological Process: sulfur compound metabolic process (GO:0006790);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: response to cold (GO:0009409);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: double fertilization forming a zygote and endosperm (GO:0009567);; Biological Process: gibberellin biosynthetic process (GO:0009686);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: negative gravitropism (GO:0009959);; Biological Process: fruit dehiscence (GO:0010047);; Biological Process: negative regulation of photomorphogenesis (GO:0010100);; Biological Process: fruit development (GO:0010154);; Biological Process: red light signaling pathway (GO:0010161);; Biological Process: negative regulation of seed germination (GO:0010187);; Molecular Function: phytochrome binding (GO:0010313);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: monocarboxylic acid metabolic process (GO:0032787);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: carpel development (GO:0048440);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: root hair cell development (GO:0080147);; ","K12126|0|gra:105795211|K12126 phytochrome-interacting factor 3 | (RefSeq) transcription factor PIL1","Plant hormone signal transduction (ko04075);; Circadian rhythm - plant (ko04712)","--","--","Helix-loop-helix DNA-binding domain","Transcription factor PIF3 OS=Arabidopsis thaliana OX=3702 GN=PIF3 PE=1 SV=1","--","--","PREDICTED: transcription factor PIL1-like [Gossypium hirsutum] "]
["evm.TU.Gh_A07G1254",1815,2374,1853,735,767,854,12.20658,17.101587,12.634058,4.352313,5.752678,4.895737,{"v":2.79e-08,"d":"2.79E-08"},-1.345046332,"down","--","--","Molecular Function: protein binding (GO:0005515);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to auxin (GO:0009733);; Biological Process: floral organ development (GO:0048437);; Biological Process: phyllome development (GO:0048827);; ","K14486|0|gra:105795828|K14486 auxin response factor | (RefSeq) auxin response factor 18","Plant hormone signal transduction (ko04075)","--","--","Auxin response factor;; B3 DNA binding domain;; AUX/IAA family","Auxin response factor 18 OS=Arabidopsis thaliana OX=3702 GN=ARF18 PE=1 SV=1","K","Transcription","PREDICTED: auxin response factor 11-like [Gossypium hirsutum]"]
["evm.TU.Gh_A08G1649",162,136,133,372,370,418,2.366152,2.25198,2.168387,5.344787,6.321434,5.979981,{"v":2.3e-06,"d":"2.30E-06"},1.444913259,"up","[I]","Lipid transport and metabolism","Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to superoxide (GO:0000303);; Molecular Function: carboxylic ester hydrolase activity (GO:0004091);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to auxin (GO:0009733);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: positive regulation of gibberellic acid mediated signaling pathway (GO:0009939);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Molecular Function: gibberellin binding (GO:0010331);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: floral organ morphogenesis (GO:0048444);; Biological Process: defense response to fungus (GO:0050832);; ","K14493|0|gra:105792243|K14493 gibberellin receptor GID1 [EC:3.-.-.-] | (RefSeq) gibberellin receptor GID1B-like","Plant hormone signal transduction (ko04075)","[V]","Defense mechanisms","alpha/beta hydrolase fold;; Carboxylesterase family","Gibberellin receptor GID1B OS=Arabidopsis thaliana OX=3702 GN=GID1B PE=1 SV=1","I","Lipid transport and metabolism","PREDICTED: gibberellin receptor GID1B-like [Gossypium hirsutum]"]
["evm.TU.Gh_A08G2199",345,208,398,1140,792,1462,7.832157,5.054124,9.368049,23.362484,19.893764,29.159548,{"v":2.82e-08,"d":"2.82E-08"},1.828357053,"up","--","--","Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: pollen development (GO:0009555);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: flower development (GO:0009908);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: organic substance biosynthetic process (GO:1901576);; ","K13464|6.40058e-167|gra:105792947|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 10A","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 10A OS=Arabidopsis thaliana OX=3702 GN=TIFY10A PE=1 SV=1","S","Function unknown","JAZ3 [Gossypium barbadense] "]
["evm.TU.Gh_A09G0903",646,398,549,232,210,191,6.094736,4.290493,6.047805,1.807559,2.523144,1.244541,{"v":2.15e-05,"d":"2.15E-05"},-1.306752805,"down","--","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: meiotic chromosome segregation (GO:0045132);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: defense response to fungus (GO:0050832);; ","K14431|0|gra:105799216|K14431 transcription factor TGA | (RefSeq) transcription factor TGA2-like","Plant hormone signal transduction (ko04075)","--","--","Seed dormancy control;; bZIP transcription factor;; Basic region leucine zipper","Transcription factor TGA9 OS=Arabidopsis thaliana OX=3702 GN=TGA9 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TGA2-like [Gossypium hirsutum]"]
["evm.TU.Gh_A09G1945",877,570,699,74,132,93,15.475675,10.793357,15.939115,1.164194,2.579708,1.331651,{"v":2.15e-16,"d":"2.15E-16"},-2.790259801,"down","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to wounding (GO:0009611);; Biological Process: gravitropism (GO:0009630);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: regulation of gene expression (GO:0010468);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Molecular Function: phosphatase activity (GO:0016791);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: lateral root development (GO:0048527);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; ","K14484|3.39099e-131|gra:105800578|K14484 auxin-responsive protein IAA | (RefSeq) auxin-induced protein 22D","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1","K","Transcription","PREDICTED: auxin-induced protein 22D-like [Gossypium hirsutum]"]
["evm.TU.Gh_A10G0769",80,67,47,215,109,248,1.198762,1.045151,0.675285,2.180955,1.722511,3.074804,0.000831241,1.539516057,"up","--","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: meiotic chromosome segregation (GO:0045132);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: defense response to fungus (GO:0050832);; ","K14431|0|gra:105778150|K14431 transcription factor TGA | (RefSeq) transcription factor TGA4-like","Plant hormone signal transduction (ko04075)","--","--","Seed dormancy control;; bZIP transcription factor;; Basic region leucine zipper","Transcription factor TGA4 OS=Arabidopsis thaliana OX=3702 GN=TGA4 PE=1 SV=2","K","Transcription","PREDICTED: transcription factor TGA4-like isoform X1 [Gossypium hirsutum] "]
["evm.TU.Gh_A10G1020",525,295,450,77,118,106,13.358505,8.005873,11.882134,1.757666,3.188858,2.268525,{"v":1.28e-06,"d":"1.28E-06"},-2.037240108,"down","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: gravitropism (GO:0009630);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: lateral root development (GO:0048527);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; ","K14484|4.87331e-119|gra:105776995|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA4-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2","K","Transcription","PREDICTED: auxin-responsive protein IAA4-like [Gossypium hirsutum] "]
["evm.TU.Gh_A10G2142",283,215,260,653,388,590,7.357168,5.977528,7.001707,15.314328,11.160148,13.45747,{"v":1.71e-05,"d":"1.71E-05"},1.100767115,"up","--","--","Molecular Function: protein phosphatase inhibitor activity (GO:0004864);; Molecular Function: receptor activity (GO:0004872);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: fatty acid catabolic process (GO:0009062);; Cellular Component: chloroplast (GO:0009507);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: positive regulation of abscisic acid-activated signaling pathway (GO:0009789);; Biological Process: regulation of seed germination (GO:0010029);; Molecular Function: abscisic acid binding (GO:0010427);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of protein serine/threonine phosphatase activity (GO:0080163);; ","K14496|4.46371e-126|gra:105778458|K14496 abscisic acid receptor PYR/PYL family | (RefSeq) abscisic acid receptor PYL4-like","Plant hormone signal transduction (ko04075)","--","--","Polyketide cyclase / dehydrase and lipid transport;; Polyketide cyclase / dehydrase and lipid transport;; Pathogenesis-related protein Bet v I family","Abscisic acid receptor PYL6 OS=Arabidopsis thaliana OX=3702 GN=PYL6 PE=1 SV=1","S","Function unknown","PREDICTED: abscisic acid receptor PYL4-like [Gossypium hirsutum] "]
["evm.TU.Gh_A11G0443",474,675,659,148,167,108,4.568172,6.939265,6.571645,1.280412,1.773678,0.909039,{"v":4.84e-10,"d":"4.84E-10"},-2.060744049,"down","[HJ]","Coenzyme transport and metabolism;; Translation, ribosomal structure and biogenesis","Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: membrane fusion (GO:0006944);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plastid (GO:0009536);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to chitin (GO:0010200);; Biological Process: auxin homeostasis (GO:0010252);; Molecular Function: indole-3-acetic acid amido synthetase activity (GO:0010279);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: cytoplasmic vesicle (GO:0016023);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: detection of fungus (GO:0016046);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: benzoate metabolic process (GO:0018874);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: secretion by cell (GO:0032940);; Biological Process: positive regulation of plant-type hypersensitive response (GO:0034052);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: interspecies interaction between organisms (GO:0044419);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: 4-aminobenzoate amino acid synthetase activity (GO:0052625);; Molecular Function: benzoate amino acid synthetase activity (GO:0052626);; Molecular Function: vanillate amino acid synthetase activity (GO:0052627);; Molecular Function: 4-hydroxybenzoate amino acid synthetase activity (GO:0052628);; Biological Process: cellular response to hypoxia (GO:0071456);; Biological Process: positive regulation of camalexin biosynthetic process (GO:1901183);; ","K14487|0|gra:105802235|K14487 auxin responsive GH3 gene family | (RefSeq) probable indole-3-acetic acid-amido synthetase GH3.1","Plant hormone signal transduction (ko04075)","--","--","GH3 auxin-responsive promoter","Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana OX=3702 GN=GH3.1 PE=2 SV=1","S","Function unknown","PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Gossypium hirsutum]"]
["evm.TU.Gh_A11G1077",400,604,566,148,176,156,3.574927,5.420122,5.110002,1.157472,1.599109,1.258593,{"v":9.27e-07,"d":"9.27E-07"},-1.685126045,"down","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Molecular Function: inositol hexakisphosphate binding (GO:0000822);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: defense response (GO:0006952);; Biological Process: methionine biosynthetic process (GO:0009086);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: cell tip growth (GO:0009932);; Molecular Function: auxin binding (GO:0010011);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: pollen maturation (GO:0010152);; Biological Process: lateral root formation (GO:0010311);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: SCF ubiquitin ligase complex (GO:0019005);; Biological Process: regulation of circadian rhythm (GO:0042752);; Cellular Component: nuclear SCF ubiquitin ligase complex (GO:0043224);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: negative regulation of transcription by glucose (GO:0045014);; Biological Process: stamen development (GO:0048443);; Biological Process: lateral root development (GO:0048527);; Biological Process: photoperiodism, flowering (GO:0048573);; Biological Process: negative regulation of response to stimulus (GO:0048585);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cellular response to nitrate (GO:0071249);; Biological Process: cell wall organization (GO:0071555);; Biological Process: primary root development (GO:0080022);; ","K14485|0|gra:105803049|K14485 transport inhibitor response 1 | (RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like","Plant hormone signal transduction (ko04075)","[R]","General function prediction only","Leucine Rich repeats (2 copies);; F-box-like;; Leucine Rich repeat","Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2","S","Function unknown","PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Gossypium hirsutum]"]
["evm.TU.Gh_A11G1164",1104,1637,1319,225,173,255,16.355868,25.753353,20.121235,3.083266,3.025201,3.395214,{"v":6e-13,"d":"6.00E-13"},-2.641276194,"down","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: regulation of carbohydrate metabolic process (GO:0006109);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Biological Process: response to wounding (GO:0009611);; Biological Process: virus induced gene silencing (GO:0009616);; Biological Process: gravitropism (GO:0009630);; Biological Process: response to salt stress (GO:0009651);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: flower development (GO:0009908);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: vegetative phase change (GO:0010050);; Biological Process: lateral root formation (GO:0010311);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cell wall organization (GO:0071555);; Biological Process: response to karrikin (GO:0080167);; ","K14484|5.99943e-142|gra:105803161|K14484 auxin-responsive protein IAA | (RefSeq) auxin-induced protein AUX28-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1","K","Transcription","PREDICTED: auxin-induced protein AUX28-like [Gossypium hirsutum] "]
["evm.TU.Gh_A11G1389",202,320,269,115,107,133,0.790389,1.21765,1.096796,0.369271,0.422629,0.419137,0.001606765,-1.150998794,"down","[T]","Signal transduction mechanisms","Molecular Function: phosphorelay sensor kinase activity (GO:0000155);; Molecular Function: phosphorelay response regulator activity (GO:0000156);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Biological Process: response to superoxide (GO:0000303);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Molecular Function: osmosensor activity (GO:0005034);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Biological Process: osmosensory signaling pathway (GO:0007231);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: cell death (GO:0008219);; Biological Process: sulfate transport (GO:0008272);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to toxic substance (GO:0009636);; Biological Process: response to salt stress (GO:0009651);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: response to glucose (GO:0009749);; Biological Process: response to fructose (GO:0009750);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Molecular Function: cytokinin receptor activity (GO:0009884);; Molecular Function: transmembrane histidine kinase cytokinin receptor activity (GO:0009885);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: negative regulation of signal transduction (GO:0009968);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: embryonic root morphogenesis (GO:0010086);; Biological Process: phloem or xylem histogenesis (GO:0010087);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: leaf senescence (GO:0010150);; Biological Process: regulation of chlorophyll catabolic process (GO:0010271);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: protein import into peroxisome matrix (GO:0016558);; Biological Process: peptidyl-histidine phosphorylation (GO:0018106);; Molecular Function: cytokine binding (GO:0019955);; Biological Process: signal transduction by protein phosphorylation (GO:0023014);; Biological Process: regulation of anthocyanin metabolic process (GO:0031537);; Biological Process: carbohydrate homeostasis (GO:0033500);; Biological Process: cellular response to reactive oxygen species (GO:0034614);; Biological Process: negative regulation of iron ion transport (GO:0034757);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: identical protein binding (GO:0042802);; Molecular Function: protein histidine kinase binding (GO:0043424);; Biological Process: regulation of meristem development (GO:0048509);; Biological Process: cellular response to cold (GO:0070417);; Biological Process: cellular response to abscisic acid stimulus (GO:0071215);; Biological Process: cellular response to inorganic substance (GO:0071241);; Biological Process: cellular response to sucrose stimulus (GO:0071329);; Biological Process: secondary growth (GO:0080117);; ","K14489|0|gra:105803420|K14489 arabidopsis histidine kinase 2/3/4 (cytokinin receptor) [EC:2.7.13.3] | (RefSeq) histidine kinase 2","Plant hormone signal transduction (ko04075)","[T]","Signal transduction mechanisms","CHASE domain;; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase;; Response regulator receiver domain;; His Kinase A (phospho-acceptor) domain;; EPTP domain","Histidine kinase 2 OS=Arabidopsis thaliana OX=3702 GN=AHK2 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: histidine kinase 2 isoform X3 [Gossypium raimondii] "]
["evm.TU.Gh_A11G2364",431,638,459,286,271,185,7.049038,11.159377,7.809331,4.220757,4.9147,2.683061,0.007622398,-1.015284658,"down","[T]","Signal transduction mechanisms","Biological Process: transition metal ion transport (GO:0000041);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytosol (GO:0005829);; Biological Process: DNA-dependent DNA replication (GO:0006261);; Biological Process: double-strand break repair (GO:0006302);; Biological Process: embryo sac development (GO:0009553);; Molecular Function: histidine phosphotransfer kinase activity (GO:0009927);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: response to gamma radiation (GO:0010332);; Biological Process: inorganic anion transport (GO:0015698);; Biological Process: cell growth (GO:0016049);; Biological Process: regulation of anthocyanin metabolic process (GO:0031537);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Molecular Function: protein histidine kinase binding (GO:0043424);; Biological Process: regulation of shoot system development (GO:0048831);; Biological Process: chiasma assembly (GO:0051026);; Biological Process: cell division (GO:0051301);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: regulation of cytokinin-activated signaling pathway (GO:0080036);; ","K14490|5.7424e-91|gra:105804793|K14490 histidine-containing phosphotransfer peotein | (RefSeq) histidine-containing phosphotransfer protein 1-like","Plant hormone signal transduction (ko04075)","[T]","Signal transduction mechanisms","Hpt domain","Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana OX=3702 GN=AHP5 PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: histidine-containing phosphotransfer protein 1-like [Gossypium hirsutum]"]
["evm.TU.Gh_A12G0274",77,11,0,1978,688,1649,2.701454,0.379859,0,62.927494,26.822424,51.036728,{"v":3.23e-10,"d":"3.23E-10"},5.610483738,"up","[S]","Function unknown","Biological Process: MAPK cascade (GO:0000165);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: response to vitamin B1 (GO:0010266);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: defense response to fungus (GO:0050832);; ","K13449|4.4241e-108|gra:105763018|K13449 pathogenesis-related protein 1 | (RefSeq) pathogenesis-related protein 1-like","Plant hormone signal transduction (ko04075);; Plant-pathogen interaction (ko04626)","[S]","Function unknown","Cysteine-rich secretory protein family","Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1 SV=1","S","Function unknown","PREDICTED: pathogenesis-related protein 1-like [Gossypium hirsutum] "]
["evm.TU.Gh_A12G1016",1494,1780,1467,514,528,413,8.373546,12.529543,9.756155,2.595124,3.479495,2.375782,{"v":9.6e-17,"d":"9.60E-17"},-1.676890936,"down","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to auxin (GO:0009733);; Biological Process: floral organ development (GO:0048437);; Biological Process: phyllome development (GO:0048827);; ","K14486|0|gra:105763914|K14486 auxin response factor | (RefSeq) auxin response factor 18-like","Plant hormone signal transduction (ko04075)","--","--","Auxin response factor;; B3 DNA binding domain;; AUX/IAA family","Auxin response factor 11 OS=Arabidopsis thaliana OX=3702 GN=ARF11 PE=2 SV=3","K","Transcription","PREDICTED: auxin response factor 18-like isoform X1 [Gossypium hirsutum]"]
["evm.TU.Gh_A12G2172",183,83,55,438,295,783,2.086661,1.069315,0.679209,4.516423,3.895278,7.847065,0.003577502,2.225092991,"up","--","--","Molecular Function: protein binding (GO:0005515);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: response to salt stress (GO:0009651);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: stomatal complex development (GO:0010374);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: response to chemical (GO:0042221);; Biological Process: single-organism metabolic process (GO:0044710);; Biological Process: cell fate commitment (GO:0045165);; Biological Process: shoot system development (GO:0048367);; Biological Process: positive regulation of cellular process (GO:0048522);; Biological Process: reproductive structure development (GO:0048608);; ","K13422|0|gra:105765352|K13422 transcription factor MYC2 | (RefSeq) transcription factor MYC3-like","Plant hormone signal transduction (ko04075)","--","--","bHLH-MYC and R2R3-MYB transcription factors N-terminal;; Helix-loop-helix DNA-binding domain","Transcription factor MYC4 OS=Arabidopsis thaliana OX=3702 GN=MYC4 PE=1 SV=1","S","Function unknown","bHLH transcription factor PGF_A12 [Gossypium hirsutum]"]
["evm.TU.Gh_A12G2237",25,7,18,99,63,112,1.121976,0.301401,0.859296,4.138487,3.227356,4.550769,{"v":3.19e-05,"d":"3.19E-05"},2.453735435,"up","--","--","--","K14488|1.14564e-60|gra:105765421|K14488 SAUR family protein | (RefSeq) auxin-induced protein X15-like","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1","S","Function unknown","PREDICTED: auxin-responsive protein SAUR32-like [Gossypium hirsutum]"]
["evm.TU.Gh_A12G2380",943,353,524,1674,928,1698,8.211835,3.28297,4.70803,13.102117,8.907562,12.957587,0.003637055,1.23584436,"up","--","--","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: negative regulation of abscisic acid-activated signaling pathway (GO:0009788);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: positive regulation of gibberellic acid mediated signaling pathway (GO:0009939);; Biological Process: positive regulation of seed germination (GO:0010030);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Cellular Component: membrane (GO:0016020);; Biological Process: terpenoid biosynthetic process (GO:0016114);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: lipid storage (GO:0019915);; Biological Process: negative regulation of cellular metabolic process (GO:0031324);; Biological Process: release of seed from dormancy (GO:0048838);; Biological Process: response to freezing (GO:0050826);; Biological Process: negative regulation of seed dormancy process (GO:1902039);; ","K14497|0|gra:105765596|K14497 protein phosphatase 2C [EC:3.1.3.16] | (RefSeq) probable protein phosphatase 2C 75","Plant hormone signal transduction (ko04075)","[T]","Signal transduction mechanisms","Protein phosphatase 2C","Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana OX=3702 GN=AHG1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: probable protein phosphatase 2C 75 [Gossypium hirsutum]"]
["evm.TU.Gh_A13G0480",115,125,159,48,77,34,1.09909,1.255912,1.610634,0.396233,0.788691,0.31964,0.007586561,-1.265170177,"down","[HJ]","Coenzyme transport and metabolism;; Translation, ribosomal structure and biogenesis","Biological Process: immune effector process (GO:0002252);; Cellular Component: nucleus (GO:0005634);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Molecular Function: indole-3-acetic acid amido synthetase activity (GO:0010279);; Biological Process: membrane organization (GO:0016044);; Biological Process: detection of fungus (GO:0016046);; Biological Process: benzoate metabolic process (GO:0018874);; Biological Process: response to lipid (GO:0033993);; Biological Process: positive regulation of plant-type hypersensitive response (GO:0034052);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: small molecule biosynthetic process (GO:0044283);; Biological Process: interspecies interaction between organisms (GO:0044419);; Biological Process: negative regulation of biological process (GO:0048519);; Molecular Function: 4-aminobenzoate amino acid synthetase activity (GO:0052625);; Molecular Function: benzoate amino acid synthetase activity (GO:0052626);; Molecular Function: vanillate amino acid synthetase activity (GO:0052627);; Molecular Function: 4-hydroxybenzoate amino acid synthetase activity (GO:0052628);; Biological Process: regulation of macromolecule metabolic process (GO:0060255);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cellular response to hypoxia (GO:0071456);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: response to alcohol (GO:0097305);; Biological Process: positive regulation of camalexin biosynthetic process (GO:1901183);; Biological Process: organic hydroxy compound biosynthetic process (GO:1901617);; Biological Process: regulation of reactive oxygen species metabolic process (GO:2000377);; ","K14487|0|gra:105782354|K14487 auxin responsive GH3 gene family | (RefSeq) probable indole-3-acetic acid-amido synthetase GH3.5","Plant hormone signal transduction (ko04075)","--","--","GH3 auxin-responsive promoter","Indole-3-acetic acid-amido synthetase GH3.10 OS=Arabidopsis thaliana OX=3702 GN=GH3.10 PE=2 SV=1","S","Function unknown","PREDICTED: jasmonic acid-amido synthetase JAR1-like [Gossypium arboreum]"]
["evm.TU.Gh_A13G0578",232,234,163,103,122,65,2.926634,2.969465,2.399213,1.303541,1.284527,0.657617,0.006213967,-1.070443636,"down","--",null,"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane receptor protein tyrosine kinase activity (GO:0004714);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: cell-cell signaling (GO:0007267);; Biological Process: microsporogenesis (GO:0009556);; Biological Process: embryo sac egg cell differentiation (GO:0009560);; Biological Process: virus induced gene silencing (GO:0009616);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: seed germination (GO:0009845);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: animal organ morphogenesis (GO:0009887);; Biological Process: cell tip growth (GO:0009932);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: meristem initiation (GO:0010014);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: leaf senescence (GO:0010150);; Biological Process: pollen maturation (GO:0010152);; Biological Process: production of ta-siRNAs involved in RNA interference (GO:0010267);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: calcium-mediated signaling (GO:0019722);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Molecular Function: receptor serine/threonine kinase binding (GO:0033612);; Biological Process: production of miRNAs involved in gene silencing by miRNA (GO:0035196);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: anther development (GO:0048653);; Biological Process: root hair elongation (GO:0048767);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: oxidation-reduction process (GO:0055114);; ","K13416|0|gra:105782187|K13416 brassinosteroid insensitive 1-associated receptor kinase 1 [EC:2.7.10.1 2.7.11.1] | (RefSeq) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like","Plant hormone signal transduction (ko04075);; Plant-pathogen interaction (ko04626)","[T]","Signal transduction mechanisms","Protein tyrosine kinase;; Protein kinase domain","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=BAK1 PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Gossypium hirsutum]"]
["evm.TU.Gh_D01G0196",243,155,301,524,589,697,3.564452,2.37703,4.60397,7.123238,9.391231,8.722987,{"v":2.48e-07,"d":"2.48E-07"},1.391442821,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: response to stress (GO:0006950);; Biological Process: multicellular organism development (GO:0007275);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to auxin (GO:0009733);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: response to salicylic acid (GO:0009751);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: response to other organism (GO:0051707);; Biological Process: regulation of jasmonic acid mediated signaling pathway (GO:2000022);; ","K13464|2.70561e-116|gra:105774358|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 9-like","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 9-like [Gossypium raimondii] "]
["evm.TU.Gh_D01G0947",53,51,84,9,9,10,2.811814,2.911884,4.681849,0.419081,0.496793,0.463435,{"v":9.23e-05,"d":"9.23E-05"},-2.732077253,"down","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14488|1.99201e-73|gra:105784498|K14488 SAUR family protein | (RefSeq) auxin-induced protein 15A-like","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1","S","Function unknown","PREDICTED: auxin-induced protein 15A-like [Gossypium raimondii] "]
["evm.TU.Gh_D01G1042",638,1015,660,227,200,58,10.610445,17.185247,10.909007,3.442519,3.51644,0.755828,{"v":2.25e-05,"d":"2.25E-05"},-2.210724435,"down","--","--","Biological Process: mitotic cell cycle (GO:0000278);; Molecular Function: protein binding (GO:0005515);; Biological Process: DNA replication (GO:0006260);; Biological Process: organelle organization (GO:0006996);; Biological Process: response to hormone (GO:0009725);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: tissue development (GO:0009888);; Biological Process: stomatal lineage progression (GO:0010440);; Biological Process: response to organic cyclic compound (GO:0014070);; Biological Process: DNA endoreduplication (GO:0042023);; Biological Process: regulation of cell proliferation (GO:0042127);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: single-organism developmental process (GO:0044767);; Biological Process: mitotic cell cycle phase transition (GO:0044772);; Biological Process: negative regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0045736);; Biological Process: seed development (GO:0048316);; Biological Process: animal organ development (GO:0048513);; Biological Process: regulation of cell cycle (GO:0051726);; ","K14505|0|gra:105785192|K14505 cyclin D3, plant | (RefSeq) cyclin-D3-3-like","Plant hormone signal transduction (ko04075)","[D]","Cell cycle control, cell division, chromosome partitioning","Cyclin, N-terminal domain;; Cyclin, C-terminal domain","Cyclin-D3-2 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-2 PE=1 SV=1","D","Cell cycle control, cell division, chromosome partitioning","hypothetical protein GOBAR_DD01139 [Gossypium barbadense]"]
["evm.TU.Gh_D01G1617",196,395,148,29,35,22,1.613977,3.49495,1.263303,0.2118,0.311121,0.157909,0.005572104,-3.069015786,"down","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: establishment of planar polarity (GO:0001736);; Biological Process: amino acid transmembrane transport (GO:0003333);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: syncytium formation (GO:0006949);; Biological Process: cell adhesion (GO:0007155);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to ethylene (GO:0009723);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: positive gravitropism (GO:0009958);; Cellular Component: cell surface (GO:0009986);; Molecular Function: auxin binding (GO:0010011);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: response to far red light (GO:0010218);; Biological Process: lateral root formation (GO:0010311);; Molecular Function: auxin influx transmembrane transporter activity (GO:0010328);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Molecular Function: symporter activity (GO:0015293);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: actin nucleation (GO:0045010);; Biological Process: root hair elongation (GO:0048767);; Biological Process: root cap development (GO:0048829);; Biological Process: auxin influx (GO:0060919);; Biological Process: cell wall organization (GO:0071555);; ","K13946|0|gra:105785891|K13946 auxin influx carrier (AUX1 LAX family) | (RefSeq) auxin transporter-like protein 5","Plant hormone signal transduction (ko04075)","[E]","Amino acid transport and metabolism","Transmembrane amino acid transporter protein","Auxin transporter-like protein 5 OS=Medicago truncatula OX=3880 GN=LAX5 PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein GOBAR_DD13761 [Gossypium barbadense]"]
["evm.TU.Gh_D01G1881",209,188,135,90,75,74,3.075105,2.964817,2.066777,0.938555,1.291616,0.752947,0.008993382,-1.137860026,"down","--","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: meiotic chromosome segregation (GO:0045132);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: defense response to fungus (GO:0050832);; ","K14431|0|gra:105786141|K14431 transcription factor TGA | (RefSeq) transcription factor TGA3-like","Plant hormone signal transduction (ko04075)","--","--","Seed dormancy control;; bZIP transcription factor;; Basic region leucine zipper","Transcription factor TGA7 OS=Arabidopsis thaliana OX=3702 GN=TGA7 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TGA7-like [Gossypium hirsutum]"]
["evm.TU.Gh_D01G1903",46,16,34,118,109,117,0.486911,0.173418,0.369849,1.211127,1.328967,1.108322,0.000423758,1.865406504,"up","--","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: GTPase activator activity (GO:0005096);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: positive regulation of GTPase activity (GO:0043547);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: meiotic chromosome segregation (GO:0045132);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: defense response to fungus (GO:0050832);; ","K14431|0|gra:105786219|K14431 transcription factor TGA | (RefSeq) transcription factor TGA2-like","Plant hormone signal transduction (ko04075)","--","--","Seed dormancy control;; bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor TGA10 OS=Nicotiana tabacum OX=4097 GN=TGA10 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TGA2-like isoform X1 [Gossypium raimondii] "]
["evm.TU.Gh_D02G0405",937,722,817,177,209,134,28.248745,23.282795,25.508911,4.782955,6.953904,3.515253,{"v":5.92e-23,"d":"5.92E-23"},-2.208567929,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to external stimulus (GO:0009605);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: lateral root development (GO:0048527);; Biological Process: regulation of biological quality (GO:0065008);; ","K14484|3.36127e-136|gra:105796692|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA4-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1","K","Transcription","PREDICTED: auxin-responsive protein IAA4-like [Gossypium hirsutum] "]
["evm.TU.Gh_D02G0430",135,29,36,649,266,536,3.526797,0.80632,0.969571,15.291545,7.666406,12.278489,{"v":8.95e-06,"d":"8.95E-06"},2.853187759,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein folding (GO:0006457);; Biological Process: response to heat (GO:0009408);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: jasmonic acid and ethylene-dependent systemic resistance (GO:0009861);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: response to chitin (GO:0010200);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K14516|5.41645e-130|gra:105796722|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B","Plant hormone signal transduction (ko04075)","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1B-like [Gossypium hirsutum]"]
["evm.TU.Gh_D02G0731",55,29,42,140,108,166,0.500931,0.270637,0.412187,1.198251,1.129925,1.328884,0.000380343,1.719941105,"up","--","--","Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Biological Process: response to external stimulus (GO:0009605);; Biological Process: response to insect (GO:0009625);; Biological Process: shade avoidance (GO:0009641);; Biological Process: response to auxin (GO:0009733);; Biological Process: jasmonic acid and ethylene-dependent systemic resistance (GO:0009861);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: stomatal movement (GO:0010118);; Biological Process: response to far red light (GO:0010218);; Biological Process: cell growth (GO:0016049);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: SCF ubiquitin ligase complex (GO:0019005);; Biological Process: developmental maturation (GO:0021700);; Biological Process: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031146);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of circadian rhythm (GO:0042752);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: stamen development (GO:0048443);; Biological Process: lateral root development (GO:0048527);; Biological Process: developmental growth (GO:0048589);; Biological Process: defense response to fungus (GO:0050832);; ","K13463|0|gra:105797076|K13463 coronatine-insensitive protein 1 | (RefSeq) coronatine-insensitive protein 1-like","Plant hormone signal transduction (ko04075)","[R]","General function prediction only","--","Coronatine-insensitive protein 1 OS=Arabidopsis thaliana OX=3702 GN=COI1 PE=1 SV=1","S","Function unknown","PREDICTED: coronatine-insensitive protein 1-like [Gossypium hirsutum]"]
["evm.TU.Gh_D02G1776",36,24,38,125,108,182,0.634514,0.385459,0.57298,1.937248,2.047937,2.735594,{"v":1.93e-05,"d":"1.93E-05"},2.081698504,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: response to stress (GO:0006950);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to auxin (GO:0009733);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: response to salicylic acid (GO:0009751);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: shoot system development (GO:0048367);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: response to other organism (GO:0051707);; Biological Process: regulation of jasmonic acid mediated signaling pathway (GO:2000022);; ","K13464|1.21692e-121|gra:105794807|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 9","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1","S","Function unknown","hypothetical protein B456_005G196200 [Gossypium raimondii]"]
["evm.TU.Gh_D02G2199",83,48,66,292,310,282,4.340196,2.646598,3.553334,13.758922,17.879967,12.895,{"v":8.23e-10,"d":"8.23E-10"},2.195739059,"up","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14488|5.18737e-73|gra:105795368|K14488 SAUR family protein | (RefSeq) auxin-induced protein 15A-like","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1","S","Function unknown","PREDICTED: auxin-induced protein 15A [Gossypium hirsutum] "]
["evm.TU.Gh_D02G2216",478,189,310,98,24,72,28.370909,12.044409,19.067736,5.225473,1.62559,3.746556,0.003199924,-2.36247097,"down","--","--","Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14488|1.08359e-65|gra:105795372|K14488 SAUR family protein | (RefSeq) auxin-induced protein X15-like","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1","S","Function unknown","PREDICTED: auxin-induced protein X15-like [Gossypium raimondii] "]
["evm.TU.Gh_D03G1541",102,55,71,191,203,167,3.628436,2.083043,2.607712,6.13792,8.014567,5.209548,0.001976031,1.333542494,"up","--","--","--","K14488|1.36756e-103|gra:105789229|K14488 SAUR family protein | (RefSeq) uncharacterized LOC105789229","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD02166 [Gossypium barbadense]"]
["evm.TU.Gh_D05G0138",103,206,162,50,56,62,1.730601,4.335117,2.947953,0.851246,1.079431,1.00796,0.006917249,-1.475739811,"down","--","--","Molecular Function: protein binding (GO:0005515);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: response to stress (GO:0006950);; Biological Process: pattern specification process (GO:0007389);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: response to hormone (GO:0009725);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: regulation of gene expression (GO:0010468);; Biological Process: growth (GO:0040007);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: root development (GO:0048364);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: response to oxygen-containing compound (GO:1901700);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; ","K14484|2.61405e-146|gra:105769168|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA9-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family;; PB1 domain","Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=2","S","Function unknown","auxin-responsive protein IAA9-like [Gossypium hirsutum] "]
["evm.TU.Gh_D05G0352",224,129,168,777,415,817,5.341022,3.292178,4.154169,16.721941,10.953718,17.095926,{"v":5.19e-07,"d":"5.19E-07"},1.935144985,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: pollen development (GO:0009555);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to auxin (GO:0009733);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: flower development (GO:0009908);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: organic substance biosynthetic process (GO:1901576);; Biological Process: regulation of jasmonic acid mediated signaling pathway (GO:2000022);; ","K13464|1.57315e-161|gra:105769636|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 10A-like","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 10A OS=Arabidopsis thaliana OX=3702 GN=TIFY10A PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 10B-like [Gossypium hirsutum] "]
["evm.TU.Gh_D05G0472",76,255,135,16,10,7,0.59953,2.150964,1.102934,0.113762,0.078716,0.041836,0.004242943,-3.815660155,"down","--","--","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: regulation of carbohydrate metabolic process (GO:0006109);; Biological Process: regulation of translation (GO:0006417);; Biological Process: response to stress (GO:0006950);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to auxin (GO:0009733);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: flower development (GO:0009908);; Biological Process: lateral root formation (GO:0010311);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell differentiation (GO:0030154);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: response to karrikin (GO:0080167);; Biological Process: response to oxygen-containing compound (GO:1901700);; ","K14484|0|gra:105771085|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA6-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-responsive protein IAA18 OS=Arabidopsis thaliana OX=3702 GN=IAA18 PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_DD20852 [Gossypium barbadense]"]
["evm.TU.Gh_D05G1792",382,310,317,115,138,204,1.619278,1.407968,1.414264,0.436353,0.652269,0.757787,0.000485089,-1.133374638,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: binding (GO:0005488);; Molecular Function: protein binding (GO:0005515);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: signal transduction (GO:0007165);; Cellular Component: plastid (GO:0009536);; Biological Process: response to hormone (GO:0009725);; Biological Process: response to auxin (GO:0009733);; Biological Process: post-embryonic animal morphogenesis (GO:0009886);; Biological Process: animal organ morphogenesis (GO:0009887);; Biological Process: flower development (GO:0009908);; Biological Process: shoot system morphogenesis (GO:0010016);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: posttranscriptional regulation of gene expression (GO:0010608);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cellular protein metabolic process (GO:0044267);; Biological Process: meristem development (GO:0048507);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: post-embryonic animal organ development (GO:0048569);; Biological Process: phyllome development (GO:0048827);; Biological Process: regulation of cellular process (GO:0050794);; ","K14486|0|gra:105769031|K14486 auxin response factor | (RefSeq) auxin response factor 5","Plant hormone signal transduction (ko04075)","--","--","Auxin response factor;; B3 DNA binding domain;; AUX/IAA family","Auxin response factor 5 OS=Arabidopsis thaliana OX=3702 GN=ARF5 PE=1 SV=3","K","Transcription","PREDICTED: auxin response factor 5 isoform X2 [Gossypium raimondii] "]
["evm.TU.Gh_D05G2656",276,315,336,159,129,91,8.432025,11.040977,11.695368,4.889333,4.391892,2.537272,0.000140145,-1.267286806,"down","[TK]","Signal transduction mechanisms;; Transcription","Molecular Function: phosphorelay response regulator activity (GO:0000156);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: response to temperature stimulus (GO:0009266);; Cellular Component: plastid (GO:0009536);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: red light signaling pathway (GO:0010161);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: stem cell population maintenance (GO:0019827);; Biological Process: regulation of anthocyanin metabolic process (GO:0031537);; Biological Process: negative regulation of protein binding (GO:0032091);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: regulation of circadian rhythm (GO:0042752);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: regulation of shoot system development (GO:0048831);; ","K14492|3.33627e-102|gra:105771160|K14492 two-component response regulator ARR-A family | (RefSeq) two-component response regulator ARR17-like","Plant hormone signal transduction (ko04075)","[K]","Transcription","Response regulator receiver domain","Two-component response regulator ARR17 OS=Arabidopsis thaliana OX=3702 GN=ARR17 PE=2 SV=1","K","Transcription","PREDICTED: two-component response regulator ARR17-like [Gossypium hirsutum]"]
["evm.TU.Gh_D05G2975",533,315,287,107,82,127,6.976263,4.416569,3.706563,1.269965,1.20902,1.54757,0.000676245,-1.841413391,"down","--","--","Biological Process: response to stimulus (GO:0050896);; ","K13464|0|gra:105765832|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 6B-like","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 6B OS=Arabidopsis thaliana OX=3702 GN=TIFY6B PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 6B-like isoform X1 [Gossypium hirsutum]"]
["evm.TU.Gh_D06G0810",230,247,191,427,488,490,5.004123,5.758626,4.29828,8.389943,11.754979,9.348278,{"v":9.4e-05,"d":"9.40E-05"},1.094716006,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: pollen development (GO:0009555);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: flower development (GO:0009908);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: organic substance biosynthetic process (GO:1901576);; ","K13464|0|gra:105773969|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 10A-like","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 10A OS=Arabidopsis thaliana OX=3702 GN=TIFY10A PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 10A-like [Gossypium hirsutum]"]
["evm.TU.Gh_D08G1114",200,107,146,292,238,390,2.957725,1.698237,2.236956,3.900366,3.885214,5.056922,0.002531994,1.024481262,"up","--","--","--","K14488|1.99903e-55|gra:105791229|K14488 SAUR family protein | (RefSeq) auxin-induced protein X15-like","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1","S","Function unknown","hypothetical protein B456_004G123800, partial [Gossypium raimondii]"]
["evm.TU.Gh_D08G1506",54,19,25,99,113,95,1.814598,0.674074,0.841205,2.983296,4.196969,2.79131,0.002578554,1.688068074,"up","--","--","--","K14488|3.82947e-110|gra:105791660|K14488 SAUR family protein | (RefSeq) uncharacterized LOC105791660","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105791660 [Gossypium raimondii] "]
["evm.TU.Gh_D08G1981",53,42,87,176,185,163,0.673355,0.566324,1.046819,1.868051,2.287434,1.793537,0.000415332,1.552190109,"up","[I]","Lipid transport and metabolism","Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to superoxide (GO:0000303);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to auxin (GO:0009733);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: positive regulation of gibberellic acid mediated signaling pathway (GO:0009939);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Molecular Function: gibberellin binding (GO:0010331);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: floral organ morphogenesis (GO:0048444);; Biological Process: cell development (GO:0048468);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: carboxylic ester hydrolase activity (GO:0052689);; ","K14493|0|gra:105792243|K14493 gibberellin receptor GID1 [EC:3.-.-.-] | (RefSeq) gibberellin receptor GID1B-like","Plant hormone signal transduction (ko04075)","[V]","Defense mechanisms","alpha/beta hydrolase fold;; Carboxylesterase family","Gibberellin receptor GID1B OS=Arabidopsis thaliana OX=3702 GN=GID1B PE=1 SV=1","I","Lipid transport and metabolism","PREDICTED: gibberellin receptor GID1B-like [Gossypium hirsutum]"]
["evm.TU.Gh_D08G1987",585,274,339,1261,889,1189,6.064049,3.007806,3.775643,12.43291,11.209728,10.966215,{"v":3.05e-11,"d":"3.05E-11"},1.487413451,"up","[R]","General function prediction only","Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast (GO:0009507);; Biological Process: detection of external stimulus (GO:0009581);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to fungus (GO:0009620);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to auxin (GO:0009733);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: camalexin biosynthetic process (GO:0010120);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: acid-amino acid ligase activity (GO:0016881);; Biological Process: regulation of cellular biosynthetic process (GO:0031326);; Biological Process: monocarboxylic acid metabolic process (GO:0032787);; Biological Process: benzene-containing compound metabolic process (GO:0042537);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: positive regulation of innate immune response (GO:0045089);; Biological Process: positive regulation of cellular process (GO:0048522);; Biological Process: regulation of nitrogen compound metabolic process (GO:0051171);; ","K14487|0|gra:105792246|K14487 auxin responsive GH3 gene family | (RefSeq) probable indole-3-acetic acid-amido synthetase GH3.6","Plant hormone signal transduction (ko04075)","--","--","GH3 auxin-responsive promoter","Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica OX=39947 GN=GH3.6 PE=2 SV=2","S","Function unknown","PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Gossypium hirsutum] "]
["evm.TU.Gh_D08G2457",1104,660,729,1712,1490,1756,45.386547,29.030979,31.061653,63.406734,67.664742,63.286533,{"v":6.64e-09,"d":"6.64E-09"},1.007317725,"up","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14488|8.15738e-73|gra:105792786|K14488 SAUR family protein | (RefSeq) auxin-induced protein 6B-like","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 SV=1","S","Function unknown","PREDICTED: auxin-responsive protein SAUR71-like [Gossypium hirsutum]"]
["evm.TU.Gh_D08G2564",416,226,317,1198,694,1338,10.692339,6.195875,8.439057,27.722885,19.698896,30.141117,{"v":7.56e-07,"d":"7.56E-07"},1.742400152,"up","--","--","Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: pollen development (GO:0009555);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: flower development (GO:0009908);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: organic substance biosynthetic process (GO:1901576);; ","K13464|5.08076e-156|gra:105792947|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 10A","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 10A OS=Arabidopsis thaliana OX=3702 GN=TIFY10A PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 10A [Gossypium hirsutum]"]
["evm.TU.Gh_D09G1378",83,198,69,10,0,14,3.566069,9.102816,3.068278,0.365297,0,0.504278,0.006427852,-3.957437903,"down","--","--","--","K14488|4.48545e-94|gra:105799755|K14488 SAUR family protein | (RefSeq) uncharacterized LOC105799755","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1","S","Function unknown","PREDICTED: auxin-responsive protein SAUR71-like [Gossypium hirsutum] "]
["evm.TU.Gh_D09G2152",103,171,128,43,21,13,3.184048,5.689669,4.110106,1.177938,0.692834,0.352627,{"v":2.82e-06,"d":"2.82E-06"},-2.380469023,"down","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to wounding (GO:0009611);; Biological Process: gravitropism (GO:0009630);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: regulation of gene expression (GO:0010468);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Molecular Function: phosphatase activity (GO:0016791);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: lateral root development (GO:0048527);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; ","K14484|1.242e-133|gra:105800578|K14484 auxin-responsive protein IAA | (RefSeq) auxin-induced protein 22D","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1","K","Transcription","PREDICTED: auxin-induced protein 22D [Gossypium raimondii] "]
["evm.TU.Gh_D10G0531",241,189,250,667,352,672,5.087999,4.248254,5.473985,12.706098,8.122875,12.315745,0.000117551,1.299637435,"up","--","--","Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: defense response (GO:0006952);; Biological Process: multicellular organism development (GO:0007275);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: response to other organism (GO:0051707);; Biological Process: organic substance biosynthetic process (GO:1901576);; Biological Process: cellular response to oxygen-containing compound (GO:1901701);; ","K13464|0|gra:105776224|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 11B-like","Plant hormone signal transduction (ko04075)","--","--","tify domain;; Divergent CCT motif","Protein TIFY 11B OS=Arabidopsis thaliana OX=3702 GN=TIFY11B PE=1 SV=1","S","Function unknown","PREDICTED: protein TIFY 11B-like [Gossypium hirsutum]"]
["evm.TU.Gh_D10G0616",1060,1653,980,318,286,315,13.928032,23.095556,13.287531,3.760065,4.167572,3.60959,{"v":9.2e-05,"d":"9.20E-05"},-1.998035406,"down","--","--","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: regulation of carbohydrate metabolic process (GO:0006109);; Biological Process: regulation of translation (GO:0006417);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: gravitropism (GO:0009630);; Biological Process: response to auxin (GO:0009733);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: embryonic pattern specification (GO:0009880);; Biological Process: flower development (GO:0009908);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: cellular process (GO:0009987);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: lateral root morphogenesis (GO:0010102);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Biological Process: response to lipid (GO:0033993);; Biological Process: single-organism transport (GO:0044765);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: response to karrikin (GO:0080167);; ","K14484|0|gra:105777333|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA26-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-responsive protein IAA26 OS=Arabidopsis thaliana OX=3702 GN=IAA26 PE=1 SV=2","K","Transcription","hypothetical protein B456_011G070800 [Gossypium raimondii]"]
["evm.TU.Gh_D10G1512",82,117,105,0,2,2,2.040406,2.796925,2.624388,0,0.029138,0.022694,{"v":8.18e-16,"d":"8.18E-16"},-6.193719082,"down","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to brassinosteroid (GO:0009741);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: lateral root development (GO:0048527);; ","K14484|9.51701e-127|gra:105776995|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA4-like","Plant hormone signal transduction (ko04075)","--","--","AUX/IAA family","Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2","K","Transcription","PREDICTED: auxin-responsive protein IAA4-like isoform X1 [Gossypium hirsutum]"]
["evm.TU.Gh_D10G2388",58,107,151,408,317,325,1.517622,2.982031,4.093138,9.61241,9.140302,7.4486,{"v":6.1e-08,"d":"6.10E-08"},1.738815721,"up","--","--","Molecular Function: protein phosphatase inhibitor activity (GO:0004864);; Molecular Function: receptor activity (GO:0004872);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: fatty acid catabolic process (GO:0009062);; Cellular Component: chloroplast (GO:0009507);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: positive regulation of abscisic acid-activated signaling pathway (GO:0009789);; Biological Process: regulation of seed germination (GO:0010029);; Molecular Function: abscisic acid binding (GO:0010427);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of protein serine/threonine phosphatase activity (GO:0080163);; ","K14496|1.06147e-144|gra:105778458|K14496 abscisic acid receptor PYR/PYL family | (RefSeq) abscisic acid receptor PYL4-like","Plant hormone signal transduction (ko04075)","--","--","Polyketide cyclase / dehydrase and lipid transport;; Pathogenesis-related protein Bet v I family","Abscisic acid receptor PYL5 OS=Arabidopsis thaliana OX=3702 GN=PYL5 PE=1 SV=1","S","Function unknown","PREDICTED: abscisic acid receptor PYL4-like [Gossypium raimondii] "]
["evm.TU.Gh_D11G0290",183,190,149,419,411,410,4.772116,5.546189,4.153685,9.881065,11.988587,9.442806,{"v":1.87e-05,"d":"1.87E-05"},1.267028545,"up","--","--","Molecular Function: protein phosphatase inhibitor activity (GO:0004864);; Molecular Function: receptor activity (GO:0004872);; Cellular Component: nucleus (GO:0005634);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: fatty acid catabolic process (GO:0009062);; Cellular Component: chloroplast (GO:0009507);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: positive regulation of abscisic acid-activated signaling pathway (GO:0009789);; Biological Process: regulation of seed germination (GO:0010029);; Molecular Function: abscisic acid binding (GO:0010427);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of protein serine/threonine phosphatase activity (GO:0080163);; ","K14496|3.95216e-143|gra:105801994|K14496 abscisic acid receptor PYR/PYL family | (RefSeq) abscisic acid receptor PYR1-like","Plant hormone signal transduction (ko04075)","--","--","Polyketide cyclase / dehydrase and lipid transport;; Polyketide cyclase / dehydrase and lipid transport","Abscisic acid receptor PYR1 OS=Arabidopsis thaliana OX=3702 GN=PYR1 PE=1 SV=1","S","Function unknown","PREDICTED: abscisic acid receptor PYR1-like [Gossypium raimondii] "]
["evm.TU.Gh_D11G0514",263,464,467,56,72,84,2.543542,4.806502,4.679121,0.475608,0.755581,0.683481,{"v":2.96e-06,"d":"2.96E-06"},-2.480108824,"down","[HJ]","Coenzyme transport and metabolism;; Translation, ribosomal structure and biogenesis","Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: membrane fusion (GO:0006944);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plastid (GO:0009536);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to chitin (GO:0010200);; Biological Process: auxin homeostasis (GO:0010252);; Molecular Function: indole-3-acetic acid amido synthetase activity (GO:0010279);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: cytoplasmic vesicle (GO:0016023);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: detection of fungus (GO:0016046);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: benzoate metabolic process (GO:0018874);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: secretion by cell (GO:0032940);; Biological Process: positive regulation of plant-type hypersensitive response (GO:0034052);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: interspecies interaction between organisms (GO:0044419);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: 4-aminobenzoate amino acid synthetase activity (GO:0052625);; Molecular Function: benzoate amino acid synthetase activity (GO:0052626);; Molecular Function: vanillate amino acid synthetase activity (GO:0052627);; Molecular Function: 4-hydroxybenzoate amino acid synthetase activity (GO:0052628);; Biological Process: cellular response to hypoxia (GO:0071456);; Biological Process: positive regulation of camalexin biosynthetic process (GO:1901183);; ","K14487|0|gra:105802235|K14487 auxin responsive GH3 gene family | (RefSeq) probable indole-3-acetic acid-amido synthetase GH3.1","Plant hormone signal transduction (ko04075)","--","--","GH3 auxin-responsive promoter","Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana OX=3702 GN=GH3.1 PE=2 SV=1","S","Function unknown","PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Gossypium hirsutum]"]
["evm.TU.Gh_D11G1228",259,419,232,59,94,96,2.337782,4.144306,2.249247,0.483266,0.957911,0.755349,0.001571237,-1.845259584,"down","--","--","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Molecular Function: inositol hexakisphosphate binding (GO:0000822);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: defense response (GO:0006952);; Biological Process: methionine biosynthetic process (GO:0009086);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: cell tip growth (GO:0009932);; Molecular Function: auxin binding (GO:0010011);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: pollen maturation (GO:0010152);; Biological Process: lateral root formation (GO:0010311);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: SCF ubiquitin ligase complex (GO:0019005);; Biological Process: regulation of circadian rhythm (GO:0042752);; Cellular Component: nuclear SCF ubiquitin ligase complex (GO:0043224);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: negative regulation of transcription by glucose (GO:0045014);; Biological Process: stamen development (GO:0048443);; Biological Process: lateral root development (GO:0048527);; Biological Process: photoperiodism, flowering (GO:0048573);; Biological Process: negative regulation of response to stimulus (GO:0048585);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cellular response to nitrate (GO:0071249);; Biological Process: cell wall organization (GO:0071555);; Biological Process: primary root development (GO:0080022);; ","K14485|0|gra:105803049|K14485 transport inhibitor response 1 | (RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like","Plant hormone signal transduction (ko04075)","[R]","General function prediction only","Leucine Rich repeats (2 copies);; F-box-like;; Leucine Rich repeat","Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2","S","Function unknown","PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X3 [Gossypium hirsutum]"]
["evm.TU.Gh_D11G1242",121,81,144,258,258,266,1.196407,0.882496,1.339093,3.341608,2.908295,3.22646,0.001126575,1.197737474,"up","[I]","Lipid transport and metabolism","Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to superoxide (GO:0000303);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to auxin (GO:0009733);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: positive regulation of gibberellic acid mediated signaling pathway (GO:0009939);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Molecular Function: gibberellin binding (GO:0010331);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: floral organ morphogenesis (GO:0048444);; Biological Process: cell development (GO:0048468);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: carboxylic ester hydrolase activity (GO:0052689);; ","K14493|0|gra:105803068|K14493 gibberellin receptor GID1 [EC:3.-.-.-] | (RefSeq) gibberellin receptor GID1B-like","Plant hormone signal transduction (ko04075)","[V]","Defense mechanisms","alpha/beta hydrolase fold;; Carboxylesterase family","Gibberellin receptor GID1B OS=Arabidopsis thaliana OX=3702 GN=GID1B PE=1 SV=1","I","Lipid transport and metabolism","PREDICTED: gibberellin receptor GID1B-like isoform X1 [Gossypium hirsutum]"]
["evm.TU.Gh_D11G3472",195,96,117,430,291,463,1.950254,1.069218,1.465237,4.033032,3.401093,4.297743,{"v":3.65e-07,"d":"3.65E-07"},1.538328439,"up","[T]","Signal transduction mechanisms","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose metabolic process (GO:0005985);; Biological Process: glycolytic process (GO:0006096);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to gibberellin (GO:0009739);; Biological Process: positive regulation of abscisic acid-activated signaling pathway (GO:0009789);; Molecular Function: calcium-dependent protein serine/threonine kinase activity (GO:0009931);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: triglyceride biosynthetic process (GO:0019432);; Biological Process: growth (GO:0040007);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: regulation of circadian rhythm (GO:0042752);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: leaf development (GO:0048366);; Biological Process: lateral root development (GO:0048527);; Molecular Function: phosphatidic acid binding (GO:0070300);; Biological Process: primary root development (GO:0080022);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of reactive oxygen species metabolic process (GO:2000377);; ","K14498|0|gra:105803883|K14498 serine/threonine-protein kinase SRK2 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase SRK2I-like","Plant hormone signal transduction (ko04075)","[T]","Signal transduction mechanisms","Protein kinase domain;; Protein tyrosine kinase","Serine/threonine-protein kinase SAPK10 OS=Oryza sativa subsp. japonica OX=39947 GN=SAPK10 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein kinase SRK2I-like [Gossypium hirsutum]"]
["evm.TU.Gh_D12G0289",232,269,338,149,116,133,8.225856,10.231868,12.452865,4.751275,4.531515,4.133445,0.002674634,-1.069453102,"down","--","--","--","K14488|2.57391e-86|gra:105762898|K14488 SAUR family protein | (RefSeq) uncharacterized LOC105762898","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105762898 [Gossypium raimondii] "]
["evm.TU.Gh_D12G0291",165,269,125,21,39,20,9.014712,15.771331,7.055826,0.991066,2.32715,0.945492,0.000389159,-2.746970325,"down","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14488|2.61195e-71|gra:105762899|K14488 SAUR family protein | (RefSeq) auxin-induced protein 15A-like","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1","S","Function unknown","PREDICTED: auxin-induced protein 15A-like [Gossypium hirsutum]"]
["evm.TU.Gh_D12G1679",112,178,148,6,16,10,1.398889,2.380033,1.907045,0.066073,0.203431,0.102808,{"v":1.64e-12,"d":"1.64E-12"},-3.715314285,"down","--","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: meiotic chromosome segregation (GO:0045132);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: defense response to fungus (GO:0050832);; ","K14431|0|gra:105764552|K14431 transcription factor TGA | (RefSeq) transcription factor HBP-1b(c38)-like","Plant hormone signal transduction (ko04075)","--","--","Seed dormancy control;; Basic region leucine zipper;; bZIP transcription factor","Transcription factor PERIANTHIA OS=Arabidopsis thaliana OX=3702 GN=PAN PE=1 SV=1","K","Transcription","PREDICTED: transcription factor HBP-1b(c38)-like [Gossypium raimondii] "]
["evm.TU.Gh_D12G2759",49,38,16,173,94,144,1.981978,1.672385,0.670961,6.404957,4.266273,5.187143,{"v":4.37e-05,"d":"4.37E-05"},1.991089195,"up","--","--","--","K14488|9.20421e-90|gra:105764809|K14488 SAUR family protein | (RefSeq) uncharacterized LOC105764809","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1","S","Function unknown","PREDICTED: auxin-responsive protein SAUR71-like [Gossypium hirsutum]"]
["evm.TU.Gh_D13G0548",38,26,26,271,204,174,0.884824,0.637279,0.622696,5.746466,5.318834,3.592021,{"v":1.39e-11,"d":"1.39E-11"},2.871025327,"up","[K]","Transcription","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: regulation of cell growth (GO:0001558);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane receptor protein tyrosine kinase activity (GO:0004714);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular glucan metabolic process (GO:0006073);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: cell-cell signaling (GO:0007267);; Biological Process: embryo sac development (GO:0009553);; Biological Process: microsporogenesis (GO:0009556);; Biological Process: virus induced gene silencing (GO:0009616);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: cell tip growth (GO:0009932);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: meristem initiation (GO:0010014);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: transpiration (GO:0010148);; Biological Process: leaf senescence (GO:0010150);; Biological Process: pollen maturation (GO:0010152);; Biological Process: production of ta-siRNAs involved in RNA interference (GO:0010267);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: regulation of cell adhesion (GO:0030155);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Molecular Function: receptor serine/threonine kinase binding (GO:0033612);; Biological Process: production of miRNAs involved in gene silencing by miRNA (GO:0035196);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: single-organism biosynthetic process (GO:0044711);; Biological Process: inflorescence morphogenesis (GO:0048281);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: stamen development (GO:0048443);; Biological Process: plant ovule development (GO:0048481);; Biological Process: root hair elongation (GO:0048767);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: regulation of cell division (GO:0051302);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: regulation of organ morphogenesis (GO:2000027);; ","K13416|5.08508e-120|gra:105782189|K13416 brassinosteroid insensitive 1-associated receptor kinase 1 [EC:2.7.10.1 2.7.11.1] | (RefSeq) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like","Plant hormone signal transduction (ko04075);; Plant-pathogen interaction (ko04626)","--","--","Leucine rich repeat N-terminal domain;; Leucine Rich repeats (2 copies);; Leucine rich repeat;; Leucine Rich Repeat","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=BAK1 PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Gossypium hirsutum]"]
["evm.TU.Gh_D13G0668",590,663,798,82,109,122,5.70603,7.000084,7.941149,0.72889,1.18272,1.053192,{"v":1.51e-22,"d":"1.51E-22"},-2.691999567,"down","[HJ]","Coenzyme transport and metabolism;; Translation, ribosomal structure and biogenesis","Biological Process: immune effector process (GO:0002252);; Cellular Component: nucleus (GO:0005634);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to auxin (GO:0009733);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Molecular Function: indole-3-acetic acid amido synthetase activity (GO:0010279);; Biological Process: membrane organization (GO:0016044);; Biological Process: detection of fungus (GO:0016046);; Biological Process: benzoate metabolic process (GO:0018874);; Biological Process: response to lipid (GO:0033993);; Biological Process: positive regulation of plant-type hypersensitive response (GO:0034052);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: small molecule biosynthetic process (GO:0044283);; Biological Process: interspecies interaction between organisms (GO:0044419);; Biological Process: negative regulation of biological process (GO:0048519);; Molecular Function: 4-aminobenzoate amino acid synthetase activity (GO:0052625);; Molecular Function: benzoate amino acid synthetase activity (GO:0052626);; Molecular Function: vanillate amino acid synthetase activity (GO:0052627);; Molecular Function: 4-hydroxybenzoate amino acid synthetase activity (GO:0052628);; Biological Process: regulation of macromolecule metabolic process (GO:0060255);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cellular response to hypoxia (GO:0071456);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: response to alcohol (GO:0097305);; Biological Process: positive regulation of camalexin biosynthetic process (GO:1901183);; Biological Process: organic hydroxy compound biosynthetic process (GO:1901617);; Biological Process: regulation of reactive oxygen species metabolic process (GO:2000377);; ","K14487|0|gra:105782354|K14487 auxin responsive GH3 gene family | (RefSeq) probable indole-3-acetic acid-amido synthetase GH3.5","Plant hormone signal transduction (ko04075)","--","--","GH3 auxin-responsive promoter","Indole-3-acetic acid-amido synthetase GH3.10 OS=Arabidopsis thaliana OX=3702 GN=GH3.10 PE=2 SV=1","S","Function unknown","PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Gossypium raimondii] "]
["evm.TU.Gh_D13G1847",97,176,125,37,10,73,0.991441,2.388851,1.416163,0.364024,0.173901,0.666736,0.007404411,-1.794753818,"down","[I]","Lipid transport and metabolism","Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to superoxide (GO:0000303);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to auxin (GO:0009733);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: positive regulation of gibberellic acid mediated signaling pathway (GO:0009939);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Molecular Function: gibberellin binding (GO:0010331);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: floral organ morphogenesis (GO:0048444);; Biological Process: cell development (GO:0048468);; Biological Process: defense response to fungus (GO:0050832);; ","K14493|0|gra:105783835|K14493 gibberellin receptor GID1 [EC:3.-.-.-] | (RefSeq) gibberellin receptor GID1C-like","Plant hormone signal transduction (ko04075)","[V]","Defense mechanisms","alpha/beta hydrolase fold;; Carboxylesterase family","Gibberellin receptor GID1C OS=Arabidopsis thaliana OX=3702 GN=GID1C PE=1 SV=1","I","Lipid transport and metabolism","hypothetical protein GOBAR_DD02964 [Gossypium barbadense]"]
["evm.TU.Gh_D13G2504",51,53,46,129,159,125,1.934904,2.184417,1.818713,4.458417,6.787848,4.231408,0.002326801,1.495112516,"up","--","--","--","K14488|1.36508e-100|gra:105766843|K14488 SAUR family protein | (RefSeq) auxin-induced protein 6B-like","Plant hormone signal transduction (ko04075)","--","--","Auxin responsive protein","Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD16047 [Gossypium barbadense]"]
["evm.TU.Gh_Sca005214G02",394,322,324,85,76,121,12.451406,10.402667,10.867147,2.424208,2.755562,3.342423,{"v":9.67e-09,"d":"9.67E-09"},-1.881767941,"down","[TK]","Signal transduction mechanisms;; Transcription","Molecular Function: phosphorelay response regulator activity (GO:0000156);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: circumnutation (GO:0010031);; Biological Process: regulation of root meristem growth (GO:0010082);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: leaf senescence (GO:0010150);; Biological Process: regulation of chlorophyll biosynthetic process (GO:0010380);; Biological Process: negative regulation of gene expression (GO:0010629);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: regulation of anthocyanin metabolic process (GO:0031537);; Biological Process: negative regulation of protein binding (GO:0032091);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: regulation of circadian rhythm (GO:0042752);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: positive regulation of short-day photoperiodism, flowering (GO:0048576);; Biological Process: regulation of shoot system development (GO:0048831);; Biological Process: primary root development (GO:0080022);; Biological Process: regulation of seed growth (GO:0080113);; ","K14491|2.82494e-111|gra:105775279|K14491 two-component response regulator ARR-B family | (RefSeq) two-component response regulator ARR2-like","Plant hormone signal transduction (ko04075)","[K]","Transcription","Response regulator receiver domain","Two-component response regulator ARR2 OS=Arabidopsis thaliana OX=3702 GN=ARR2 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: two-component response regulator ARR2-like [Gossypium raimondii] "]
["evm.TU.Gh_Sca115107G01",10,7,4,116,49,125,0.50958,0.362632,0.1928,5.611011,2.86065,5.861155,{"v":1.76e-07,"d":"1.76E-07"},3.76381864,"up","--","--","Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein folding (GO:0006457);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: jasmonic acid and ethylene-dependent systemic resistance (GO:0009861);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: response to chitin (GO:0010200);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K14516|1.27069e-57|gra:105796722|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B","Plant hormone signal transduction (ko04075)","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1B-like [Gossypium arboreum] "]