Analysis code supporting Tissue composition and continuous malignant states in recurrent glioblastoma
Authors: Pengran Yu, Kaihua Cao, Zhihua Cheng, Yu Zeng, WenChuan Zhang
Correspondence: zhangwench88@sjtu.edu.cn

This archive preserves the analysis scripts used for the reported results. It is not a one-command portable installation: scripts contain original data paths and should be configured for the local data root before execution. Raw matrices, third-party software, model weights and some annotation inputs must be obtained from their original sources under the applicable terms. In particular, the CIBERSORT wrapper expects a separately supplied v1.03 CoreAlg implementation; third-party source is not bundled.

Execution stages: initial GLASS and single-nucleus discovery scripts in code; sample reconciliation, CARE validation and sensitivity analyses in v2/code; donor-held-out reference construction and continuous-axis sensitivity in v3/code. Read scripts and input dependencies before running them. Download scripts can contact public repositories; publication or submission actions are not included. Full derived outputs are provided separately in Supplementary Data 1. No claim is made that this archive reconstructs missing raw datasets without configuration.
