anndata==0.13.3.post0
annotated-types==0.8.0
array-api-compat==1.15.0
artifact_tool_v2 @ file:///var/folders/bl/vzjcvbz95c3dk19cb0fw46180000gn/T/codex-primary-runtime-K7119D/generated-source--oai-artifact-tool/lib/agent/tools/artifact_tool_v2
attrs==26.1.0
autograd==1.9.1
autograd-gamma==0.5.0
cattrs==26.2.0
certifi==2026.7.22
cffi==2.1.1
charset-normalizer==3.5.1
cloudpickle==3.1.2
contourpy==1.4.0
cryptography==50.0.1
cycler==0.12.1
donfig==0.8.1.post1
et_xmlfile==2.0.0
fast-array-utils==1.5
fastjsonschema==2.22.2
filelock==3.32.6
fonttools==4.65.0
formulaic==1.2.2
fsspec==2026.7.0
future==1.0.0
google-crc32c==1.8.0
gseapy==1.3.1
h5py==3.16.0
hf-xet==1.6.0
huggingface_hub==0.36.2
idna==3.19
igraph==1.0.0
ImageIO==2.37.4
infercnvpy==0.6.1
iniconfig==2.3.0
interface_meta==2.0.1
Jinja2==3.1.6
joblib==1.6.0
jsonschema==4.26.0
jsonschema-specifications==2025.9.1
jupyter_core==5.9.1
kiwisolver==1.5.1
lazy-loader==0.5
legacy-api-wrap==1.5
leidenalg==0.12.0
lifelines==0.30.3
llvmlite==0.49.0
lxml==6.1.1
MarkupSafe==3.0.3
matplotlib==3.11.2
mpmath==1.3.0
narwhals==2.26.0
natsort==8.4.0
nbformat==5.11.1
networkx==3.6.1
numba==0.67.0
numcodecs==0.16.5
numpy==2.3.5
openpyxl==3.1.5
packaging==26.3
pandas==2.3.3
patsy==1.0.3
pdf2image==1.17.0
pdfminer.six==20251230
pdfplumber==0.11.9
pillow==12.3.0
platformdirs==4.11.8
pluggy==1.6.0
py-cpuinfo2==10.1.1
pybiomart==0.2.0
pycparser==3.0
pydantic==2.13.5
pydantic-settings==2.15.0
pydantic_core==2.46.5
Pygments==2.21.0
pyhumps==3.8.0
pynndescent==0.6.0
pyparsing==3.3.2
pypdf==6.10.0
pypdfium2==5.13.0
pyreadr==0.5.6
pytest==9.1.1
pytest-benchmark==5.3.0
python-dateutil==2.9.0.post0
python-docx==1.2.0
python-dotenv==1.2.3
python-pptx==1.0.2
pytoml==0.1.21
pytz==2026.3.post1
PyYAML==6.0.3
referencing==0.37.0
regex==2026.9.10
reportlab==4.4.9
requests==2.34.2
requests-cache==1.3.3
rpds-py==2026.6.3
safetensors==0.8.0
scanpy==1.12.4
scikit-image==0.26.0
scikit-learn==1.9.1
scipy==1.18.1
scverse-misc==0.1.6
seaborn==0.13.2
session-info2==0.4.2
session_info==1.0.1
setuptools==84.0.0
six==1.17.0
statsmodels==0.15.0
stdlib-list==0.12.0
sympy==1.14.0
texttable==1.7.0
threadpoolctl==3.6.0
tifffile==2026.9.9
tokenizers==0.22.2
torch==2.14.0
tqdm==4.70.1
traitlets==5.16.1
transformers==4.57.6
typing-inspection==0.4.4
typing_extensions==4.16.0
tzdata==2026.3
umap-learn==0.5.12
url-normalize==3.0.0
urllib3==2.7.0
wheel==0.48.0
wrapt==2.4.1
xlsxwriter==3.2.9
zarr==3.3.0
