{"text_format":"3","workbook":"xlsx","n_sheets":3,"sheets":["ReadMe","mRNA P<0.05 FC>1.2","LncRNA P<0.05 FC>1.2"],"read":"whole","date_system":"1900"}

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["表名称","列名称","列含义"]
["表格名称","probe_set","探针集编号"]
[null,"Model_average","Model 组平均信号值"]
[null,"Sham_average","Sham 组平均信号值"]
[null,"FC","两组比较分析中基因变化倍数"]
[null,"Regulation","实验中基因的调控形式"]
[null,"P.Value","统计学p值，小于0.05为差异有显著性"]
[null,"adj.P.Val","误判率，是对p 值得再次校正"]
[null,"Gene.Symbol","基因名称"]
[null,"Description","基因描述"]
[null,"Chromosome","染色体编号"]
[null,"Strand","正义/反义链转录"]
[null,"Public.Gene.IDs","发表期刊中基因的编号"]
[null,"biotype","基因属性分类"]
[null,"Start","基因在染色体开始位置"]
[null,"Stop","基因在染色体终止位置"]
[null,"total_probes","该探针集包含的总探针数目"]
[null,"Cytoband","Cytoband 数据库注释信息"]
[null,"Entrez.ID","Entrez 数据库基因ID"]
[null,"mRNA.Accession","mRNA编号"]
[null,"mRNA.Source","mRNA来源"]
[null,"mRNA.Description","mRNA描述"]
[null,"mRNA.SeqName","mRNA所在染色体编号"]
[null,"mRNA.Assignment.Score","探针基因比对分值"]
[null,"mRNA.Assignment.Coverage","探针集比对覆盖度"]
[null,"SwissProt.mRNA.Accession","SwissProt mRNA号"]
[null,"SwissProt.Accession","SwissProt 蛋白号"]
[null,"UniGene.Accession","UniGene 数据库中的mRNA 号"]
[null,"UniGene.ID","UniGene ID号"]
[null,"UniGene.Expression.Information","UniGene 表达信息"]
[null,"GO.Biological.Process.Accession","GO信息-生物过程-登录号"]
[null,"GO.Biological.Process.ID","GO信息-生物过程-ID号"]
[null,"GO.Biological.Process.Term","GO信息-生物过程-名称"]
[null,"GO.Biological.Process.Evidence","GO信息-生物过程-实验依据"]
[null,"GO.Cellular.Component.Accession","GO信息-细胞组份-登录号"]
[null,"GO.Cellular.Component.ID","GO信息-细胞组份-ID号"]
[null,"GO.Cellular.Component.Term","GO信息-细胞组份-名称"]
[null,"GO.Cellular.Component.Evidence","GO信息-细胞组份-实验依据"]
[null,"GO.Melecular.Function.Accession","GO信息-分子功能-登录号"]
[null,"GO.Molecular.Function.ID","GO信息-分子功能-ID号"]
[null,"GO.Molecular.Function.Term","GO信息-分子功能-名称"]
[null,"GO.Molecular.Function.Evidence","GO信息-分子功能-实验依据"]
[null,"Pathway.Accession","KEGG pathway 登录号"]
[null,"Pathway.Source","KEGG pathway 来源"]
[null,"Pathway.Name","KEGG pathway 名称"]
[null,"Protein.Domains.mRNA.Accession","蛋白结构域-注释的mRNA 登录号"]
[null,"Protein.Domains.Source","蛋白结构域-注释来源"]
[null,"Protein.Domains.Accession","蛋白结构域-登录号"]
[null,"Protein.Domains.Description","蛋白结构域-描述"]
[null,"locus.type","基因属性分类"]
[null,"Model_01_expression","Model_01 样品表达量"]
[null,"Model_02_expression","Model_02 样品表达量"]
[null,"Model_03_expression","Model_03 样品表达量"]
[null,"Sham_01_expression","Sham_01 样品表达量"]
[null,"Sham_02_expression","Sham_02 样品表达量"]
[null,"Sham_03_expression.","Sham_03 样品表达量."]

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["probe_set","Model_average","Sham_average","FC","Regulation","P.Value","adj.P.Val","Gene.Symbol","Description","Chromosome","Strand","Public.Gene.IDs","biotype","Start","Stop","total_probes","Cytoband","Entrez.ID","mRNA.Accession","mRNA.Source","mRNA.Description","mRNA.SeqName","mRNA.Assignment.Score","mRNA.Assignment.Coverage","SwissProt.mRNA.Accession","SwissProt.Accession","UniGene.Accession","UniGene.ID","UniGene.Expression.Information","GO.Biological.Process.Accession","GO.Biological.Process.ID","GO.Biological.Process.Term","GO.Biological.Process.Evidence","GO.Cellular.Component.Accession","GO.Cellular.Component.ID","GO.Cellular.Component.Term","GO.Cellular.Component.Evidence","GO.Melecular.Function.Accession","GO.Molecular.Function.ID","GO.Molecular.Function.Term","GO.Molecular.Function.Evidence","Pathway.Accession","Pathway.Source","Pathway.Name","Protein.Domains.mRNA.Accession","Protein.Domains.Source","Protein.Domains.Accession","Protein.Domains.Description","locus.type","Model_01_expression","Model_02_expression","Model_03_expression","Sham_01_expression","Sham_02_expression","Sham_03_expression\n"]
["TC0100000560.rn.1",16.6,9.23,165.421,"up",5.97455584310132e-11,1.03784009550513e-6,"Rnaset2","ribonuclease T2","chr1","+","NM_001106210","coding",53174841,53192122,109,"1q11",292306,"NM_001106210","RefSeq","Rattus norvegicus ribonuclease T2 (Rnaset2), mRNA.","chr1",100,100,"NM_001106210","B5DF79","NM_001106210","Rn.18019","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| liver| lung| ovary| placenta| prostate| spleen| juvenile| adult","NM_001106210","GO:0006401","RNA catabolic process","not recorded","NM_001106210","GO:0005615","extracellular space","not recorded","NM_001106210","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017601","Pfam","IPR001568","Ribonuclease T2-like","Coding",16.75,16.41,16.64,9.22,9.27,9.2]
["TC0200001723.rn.1",16.59,12.58,16.111,"up",1.32316738285372e-10,1.1492370303776e-6,"Ctss","cathepsin S","chr2","+","NM_017320","coding",197653019,197679769,109,"2q34",50654,"NM_017320","RefSeq","Rattus norvegicus cathepsin S (Ctss), mRNA.","chr2",100,100,"NM_017320","Q02765","NM_017320","Rn.11347","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| small intestine| spleen| thymus| fetus| juvenile| adult","NM_017320","GO:0001656","metanephros development","inferred from expression pattern","NM_017320","GO:0005576","extracellular region","traceable author statement","NM_017320","GO:0001968","fibronectin binding","not recorded",{"$nulls":3},"ENSRNOT00000028732","Pfam","IPR000668","Peptidase C1A, papain C-terminal","Coding",16.6,16.55,16.61,12.67,12.46,12.61]
["TC1400001322.rn.1",18.28,4.47,14362.308,"up",4.43929329510942e-10,2.57049879431152e-6,"Spp1","secreted phosphoprotein 1","chr14","-","NM_012881","coding",6673686,6679937,80,"14p22",25353,"NM_012881","RefSeq","Rattus norvegicus secreted phosphoprotein 1 (Spp1), mRNA.","chr14",100,100,"NM_012881","P08721","NM_012881","Rn.8871","brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| testis|tailbud embryo| juvenile| adult","NM_012881","GO:0001649","osteoblast differentiation","inferred from mutant phenotype","NM_012881","GO:0005615","extracellular space","inferred from direct assay","NM_012881","GO:0005125","cytokine activity","inferred from electronic annotation","NM_012881","GenMAPP","TGF_Beta_Signaling_Pathway","ENSRNOT00000067875","Pfam","IPR002038","Osteopontin","Coding",18.72,17.83,18.3,4.45,4.41,4.54]
["TC0100000156.rn.1",14.9,10.09,28.051,"up",6.52567944531296e-10,2.59613456279237e-6,"Ifngr1","interferon gamma receptor 1","chr1","+","NM_053783","coding",15062287,15080909,130,"1p12",116465,"NM_053783","RefSeq","Rattus norvegicus interferon gamma receptor 1 (Ifngr1), mRNA.","chr1",100,100,"NM_053783","P70599","NM_053783","Rn.19927","adipose tissue| adrenal gland| brain| colon| connective tissue| embryonic tissue| eye| heart| kidney| liver| lung| muscle| pancreas| placenta| prostate| spleen| thymus| juvenile| adult","NM_053783","GO:0008150","biological_process","no biological data available","NM_053783","GO:0005783","endoplasmic reticulum","inferred from direct assay","NM_053783","GO:0019955","cytokine binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016286","Pfam","IPR015373","Interferon alpha/beta receptor, beta chain","Coding",14.8,14.8,15.11,10.15,10.04,10.09]
["TC0400000875.rn.1",17.74,6.38,2628.456,"up",7.4726111415358e-10,2.59613456279237e-6,"Gpnmb","glycoprotein (transmembrane) nmb","chr4","+","NM_133298","coding",78694447,78715685,120,"4q24",113955,"NM_133298","RefSeq","Rattus norvegicus glycoprotein (transmembrane) nmb (Gpnmb), mRNA.","chr4",100,100,"NM_133298","Q6P7C7","NM_133298","Rn.13778","adipose tissue| connective tissue| dorsal root ganglion| eye| liver| lung| ovary| placenta| prostate| spleen| thymus| vibrissa| juvenile| adult","NM_133298","GO:0001649","osteoblast differentiation","inferred from expression pattern","NM_133298","GO:0005887","integral component of plasma membrane","inferred from electronic annotation","NM_133298","GO:0005178","integrin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000011945","Pfam","IPR000601","PKD domain","Coding",18.06,17.46,17.71,6.43,6.62,6.08]
["TC0300001976.rn.1",13.41,7.05,82.139,"up",1.29113262171333e-9,3.73804412863038e-6,"LOC499908","similar to Ribonuclease T2 precursor (Ribonuclease 6)","chr3","+","LOC499908.aSep08-unspliced","coding",145831009,145842017,30,null,"NA","LOC499908.aSep08-unspliced","Ace View","similar to Ribonuclease T2 precursor (Ribonuclease 6)","chr3",100,100,"ENSRNOT00000007780","M0R7C2",{"$nulls":3},"ENSRNOT00000007780","GO:0090502","RNA phosphodiester bond hydrolysis, endonucleolytic","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000007780","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007780","Pfam","IPR001568","Ribonuclease T2-like","Coding",13.47,13.35,13.41,6.74,7.24,7.18]
["TC1400001444.rn.1",11.95,6.82,35.017,"up",3.08902886256397e-9,6.70744004644984e-6,"Anxa3","annexin A3","chr14","-","NM_012823","coding",14364008,14426491,301,"14p22",25291,"NM_012823","RefSeq","Rattus norvegicus annexin A3 (Anxa3), mRNA.","chr14",100,100,"NM_012823","P14669","NM_012823","Rn.6589","adipose tissue| brain| colon| connective tissue| eye| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| testis| thymus| metamorphosing embryo| juvenile| adult","NM_012823","GO:0006909","phagocytosis","inferred from electronic annotation","NM_012823","GO:0005737","cytoplasm","not recorded","NM_012823","GO:0004859","phospholipase inhibitor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000046639","Pfam","IPR018502","Annexin repeat","Coding",11.78,11.78,12.29,6.7,6.73,7.02]
["TC1300001958.rn.1",13.64,7.44,73.517,"up",4.34789093990608e-9,7.38465562789268e-6,"Fcgr2a","Fc gamma receptor II beta (LOC498276), mRNA","chr13","-","NM_001135992_2","coding",91219838,91233006,80,null,"NA","NM_001135992_2","RefSeq","Fc gamma receptor II beta (LOC498276), mRNA","chr13",100,100,"ENSRNOT00000073643","B0K007",{"$nulls":11},"ENSRNOT00000073643","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",13.92,13.5,13.5,7.44,7.55,7.34]
["TC0100006975.rn.1",18.18,13.05,35.017,"up",4.40641742508793e-9,7.38465562789268e-6,"Ctsd","cathepsin D","chr1","-","NM_134334","coding",215541569,215553513,130,"1q41",171293,"NM_134334","RefSeq","Rattus norvegicus cathepsin D (Ctsd), mRNA.","chr1",100,100,"NM_134334","P24268","NM_134334","Rn.11085","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa|tailbud embryo| juvenile| adult","NM_134334","GO:0000045","autophagic vacuole assembly","inferred from electronic annotation","NM_134334","GO:0005615","extracellular space","inferred from electronic annotation","NM_134334","GO:0004175","endopeptidase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000027407","Pfam","IPR001461","Aspartic peptidase","Coding",18.36,18,18.18,12.92,13.34,12.9]
["TC0800001277.rn.1",15.91,10.82,34.06,"up",4.67625421143397e-9,7.38465562789268e-6,"Ctsh","cathepsin H","chr8","+","NM_012939","coding",97439166,97458294,126,"8q31",25425,"NM_012939","RefSeq","Rattus norvegicus cathepsin H (Ctsh), mRNA.","chr8",100,100,"NM_012939","P00786","NM_012939","Rn.1997","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa| fetus| juvenile| adult","NM_012939","GO:0001656","metanephros development","inferred from expression pattern","NM_012939","GO:0001520","outer dense fiber","inferred from direct assay","NM_012939","GO:0004175","endopeptidase activity","not recorded",{"$nulls":3},"ENSRNOT00000019285","Pfam","IPR000668","Peptidase C1A, papain C-terminal","Coding",15.86,15.66,16.2,10.9,10.86,10.71]
["TC0400003733.rn.1",13.2,5.81,167.73,"up",5.39036413567235e-9,7.63638116759623e-6,"Ptpn6","protein tyrosine phosphatase, non-receptor type 6","chr4","-","NM_053908","coding",157239141,157264046,228,"4q42",116689,"NM_053908","RefSeq","Rattus norvegicus protein tyrosine phosphatase, non-receptor type 6 (Ptpn6), mRNA.","chr4",100,100,"NM_053908","P81718","NM_053908","Rn.18985","colon| connective tissue| heart| kidney| lung| placenta| prostate| small intestine| spleen| thymus| fetus| juvenile| adult","NM_053908","GO:0002244","hematopoietic progenitor cell differentiation","not recorded","NM_053908","GO:0005622","intracellular","not recorded","NM_053908","GO:0001784","phosphotyrosine binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065416","Pfam","IPR000242","Protein-tyrosine phosphatase, receptor/non-receptor type","Coding",13.15,12.86,13.59,5.75,5.88,5.8]
["TC0700003333.rn.1",5.11,9.97,-29.041,"down",5.71486703003575e-9,7.63638116759623e-6,"Arc","activity-regulated cytoskeleton-associated protein","chr7","-","NM_019361","coding",115907095,115910556,30,"7q34",54323,"NM_019361","RefSeq","Rattus norvegicus activity-regulated cytoskeleton-associated protein (Arc), mRNA.","chr7",100,100,"NM_019361","Q63053","NM_019361","Rn.10086","brain| embryonic tissue| heart| metamorphosing embryo| adult","NM_019361","GO:0006897","endocytosis","inferred from electronic annotation","NM_019361","GO:0001669","acrosomal vesicle","inferred from electronic annotation","NM_019361","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":7},"Coding",4.75,5.32,5.26,9.75,9.98,10.17]
["TC0200004423.rn.1",17.21,9.95,153.277,"up",7.93868488430064e-9,8.99644256734497e-6,"Cd53","Cd53 molecule","chr2","-","NM_012523","coding",209489279,209537108,90,"2q34-q41",24251,"NM_012523","RefSeq","Rattus norvegicus Cd53 molecule (Cd53), mRNA.","chr2",100,100,"NM_012523","P24485","NM_012523","Rn.31988","connective tissue| eye| heart| kidney| liver| lung| pituitary gland| placenta| prostate| spleen| juvenile| adult","NM_012523","GO:0016337","single organismal cell-cell adhesion","not recorded","NM_012523","GO:0001772","immunological synapse","inferred from electronic annotation","ENSRNOT00000024344","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024344","Pfam","IPR018499","Tetraspanin/Peripherin","Coding",17.37,16.91,17.36,10.06,10.11,9.67]
["TC0500003867.rn.1",16.4,8.75,200.854,"up",8.1477076470855e-9,8.99644256734497e-6,"C1qb","complement component 1, q subcomponent, B chain","chr5","-","NM_019262","coding",155246442,155252000,30,"5q36",29687,"NM_019262","RefSeq","Rattus norvegicus complement component 1, q subcomponent, B chain (C1qb), mRNA.","chr5",100,100,"NM_019262","P31721","NM_019262","Rn.6702","brain| colon| connective tissue| heart| liver| lung| muscle| nerve| placenta| prostate| small intestine| fetus| adult","NM_019262","GO:0006955","immune response","traceable author statement","NM_019262","GO:0005576","extracellular region","inferred from electronic annotation","NM_019262","GO:0042803","protein homodimerization activity","inferred from electronic annotation","NM_019262","GenMAPP","Complement_Activation_Classical","ENSRNOT00000017060","Pfam","IPR001073","Complement C1q protein","Coding",16.43,16.14,16.62,9,9.09,8.16]
["TC1000002829.rn.1",17.77,14.99,6.869,"up",8.51745826527236e-9,8.99644256734497e-6,"Sparc","secreted protein, acidic, cysteine-rich (osteonectin)","chr10","-","NM_012656","coding",40742390,40764335,139,"10q22",24791,"NM_012656","RefSeq","Rattus norvegicus secreted protein, acidic, cysteine-rich (osteonectin) (Sparc), mRNA.","chr10",100,100,"NM_012656","P16975","NM_012656","Rn.98989","brain| colon| connective tissue| dorsal root ganglion| heart| lung| muscle| ovary| pancreas| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_012656","GO:0001503","ossification","inferred from expression pattern","NM_012656","GO:0005604","basement membrane","inferred from electronic annotation","NM_012656","GO:0005509","calcium ion binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000017486","Pfam","IPR002350","Kazal domain","Coding",17.71,17.76,17.85,15.16,14.95,14.86]
["TC1700000076.rn.1",13.37,7.79,47.835,"up",9.24825155842844e-9,8.99644256734497e-6,"Golm1","golgi membrane protein 1","chr17","+","ENSRNOT00000037597","coding",5373102,5411195,176,"17p14",680692,"ENSRNOT00000037597","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:17:7606702:7633706:1 gene:ENSRNOG00000018400 gene_biotype:protein_coding transcript_biotype:protein_coding","chr17",100,100,"ENSRNOT00000037597","D4AEL2",{"$nulls":3},"ENSRNOT00000037597","GO:0006997","nucleus organization","inferred from electronic annotation","ENSRNOT00000037597","GO:0005615","extracellular space","not recorded","ENSRNOT00000037597","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",13.22,13.05,13.85,7.74,8.01,7.62]
["TCUn_KL568483v100000001.rn.1",12.37,6.34,65.345,"up",9.32220172771916e-9,8.99644256734497e-6,"Fcgr2a","Fc fragment of IgG, low affinity IIa, receptor","chrUn_KL568483v1","-","ENSRNOT00000058496","coding",601,13764,73,"13q24",116591,"ENSRNOT00000058496","ENSEMBL","ensembl:known chromosome:Rnor_5.0:13:93924825:93937843:-1 gene:ENSRNOG00000003138 gene_biotype:protein_coding transcript_biotype:protein_coding","chrUn_KL568483v1",100,100,"ENSRNOT00000058496","P27645","ENSRNOT00000058496","Rn.6050","connective tissue| dorsal root ganglion| eye| liver| lung| ovary| placenta| spleen| juvenile| adult","ENSRNOT00000058496","GO:0001788","antibody-dependent cellular cytotoxicity","not recorded","ENSRNOT00000058496","GO:0005623","cell","not recorded","ENSRNOT00000058496","GO:0019770","IgG receptor activity","inferred from direct assay",{"$nulls":7},"Coding",12.66,12.23,12.23,6.37,6.46,6.19]
["TC0300004970.rn.1",15.03,6.61,342.509,"up",1.13757866088595e-8,1.04004625885525e-5,"Ctsz","cathepsin Z","chr3","-","NM_183330","coding",172527107,172537877,70,null,252929,"NM_183330","RefSeq","Rattus norvegicus cathepsin Z (Ctsz), mRNA.","chr3",100,100,"NM_183330","Q9R1T3","NM_183330","Rn.1475","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| muscle| ovary| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| fetus| juvenile| adult","NM_183330","GO:0006508","proteolysis","inferred from electronic annotation","NM_183330","GO:0005615","extracellular space","inferred from electronic annotation","NM_183330","GO:0004197","cysteine-type endopeptidase activity","traceable author statement",{"$nulls":3},"ENSRNOT00000072069","Pfam","IPR000668","Peptidase C1A, papain C-terminal","Coding",15.3,14.6,15.2,6.56,6.91,6.35]
["TC1500000842.rn.1",14.29,6.96,160.898,"up",1.37125083075866e-8,1.19099990905543e-5,"Lcp1","lymphocyte cytosolic protein 1","chr15","+","NM_001012044","coding",57170567,57277813,272,"15q11",306071,"NM_001012044","RefSeq","Rattus norvegicus lymphocyte cytosolic protein 1 (Lcp1), mRNA.","chr15",100,100,"NM_001012044","Q5XI38","NM_001012044","Rn.14256","adipose tissue| colon| connective tissue| eye| lung| ovary| pancreas| placenta| prostate| spleen| thymus| juvenile| adult","NM_001012044","GO:0002286","T cell activation involved in immune response","inferred from electronic annotation","NM_001012044","GO:0001725","stress fiber","not recorded","NM_001012044","GO:0005509","calcium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000014502","Pfam","IPR001715","Calponin homology domain","Coding",14.51,14.12,14.25,7.26,6.99,6.63]
["TC0300000589.rn.1",12.55,10.74,3.506,"up",1.58521809967901e-8,1.31127731473924e-5,"Fmnl2","similar to formin-like 2 isoform B","chr3","+","ENSRNOT00000006433","coding",38400325,38677637,396,"3q12",499797,"ENSRNOT00000006433","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:43657159:43771437:1 gene:ENSRNOG00000004617 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000006433","F1M2S1","ENSRNOT00000006433","Rn.232925","brain| adult","ENSRNOT00000006433","GO:0007010","cytoskeleton organization","not recorded",{"$nulls":4},"ENSRNOT00000006433","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000006433","Pfam","IPR010472","Formin, FH3 domain","Coding",12.47,12.54,12.63,10.63,10.76,10.82]
["TC1000001688.rn.1",15.34,8.43,120.259,"up",1.80502841769853e-8,1.42523402926551e-5,"Grn","granulin","chr10","+","NM_001145842","coding",90377103,90383240,169,"10q32.1",29143,"NM_001145842","RefSeq","Rattus norvegicus granulin (Grn), transcript variant 2, mRNA.","chr10",100,100,"NM_001145842","P23785","NM_001145842","Rn.5820","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001145842","GO:0001835","blastocyst hatching","inferred from electronic annotation","NM_001145842","GO:0005615","extracellular space","inferred from electronic annotation","NM_001145842","GO:0005125","cytokine activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000028557","Pfam","IPR000118","Granulin","Coding",15.36,15.04,15.61,8.5,8.59,8.2]
["TC1700001048.rn.1",16.77,10.98,55.33,"up",1.89077458357081e-8,1.4280280561395e-5,"Vim","vimentin","chr17","+","NM_031140","coding",80882414,80891204,160,"17q12.3",81818,"NM_031140","RefSeq","Rattus norvegicus vimentin (Vim), mRNA.","chr17",100,100,"NM_031140","P31000","NM_031140","Rn.2710","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| ovary| pancreas| pineal gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_031140","GO:0007568","aging","inferred from expression pattern","NM_031140","GO:0005737","cytoplasm","inferred from direct assay","NM_031140","GO:0001948","glycoprotein binding","not recorded","NM_031140","GenMAPP","Striated_muscle_contraction","ENSRNOT00000024430","Pfam","IPR001664","Intermediate filament protein","Coding",16.94,16.69,16.67,11.11,10.95,10.87]
["TC1000003088.rn.1",15.34,4.84,1448.155,"up",2.39365157026099e-8,1.56313370676205e-5,"Cd68","Cd68 molecule","chr10","-","NM_001031638","coding",56268726,56270628,80,"10q24",287435,"NM_001031638","RefSeq","Rattus norvegicus Cd68 molecule (Cd68), mRNA.","chr10",100,100,"NM_001031638","Q4FZY1","NM_001031638","Rn.12478","connective tissue| heart| liver| ovary| placenta| prostate| spleen| thymus| juvenile| adult","NM_001031638","GO:0071310","cellular response to organic substance","inferred from electronic annotation","NM_001031638","GO:0016020","membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000056918","Pfam","IPR002000","Lysosome-associated membrane glycoprotein","Coding",15.58,15,15.44,4.73,5.28,4.5]
["TC1800000624.rn.1",15.75,10.42,40.224,"up",2.54722036361256e-8,1.56313370676205e-5,"Csf1r","colony stimulating factor 1 receptor","chr18","+","NM_001029901","coding",56414489,56458302,309,"18q12.1",307403,"NM_001029901","RefSeq","Rattus norvegicus colony stimulating factor 1 receptor (Csf1r), mRNA.","chr18",100,100,"NM_001029901","D4ACA7","NM_001029901","Rn.72599","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| lung| muscle| ovary| pituitary gland| placenta| prostate| spleen| thymus| metamorphosing embryo| juvenile| adult","NM_001029901","GO:0001934","positive regulation of protein phosphorylation","not recorded","NM_001029901","GO:0005622","intracellular","not recorded","NM_001029901","GO:0005011","macrophage colony-stimulating factor receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000049357","Pfam","IPR000719","Protein kinase domain","Coding",15.63,15.44,16.19,10.63,10.54,10.1]
["TC1800000272.rn.1",7.41,11.36,-15.455,"down",2.55652634420996e-8,1.56313370676205e-5,"Egr1","early growth response 1","chr18","+","NM_012551","coding",27656299,27661336,60,"18q",24330,"NM_012551","RefSeq","Rattus norvegicus early growth response 1 (Egr1), mRNA.","chr18",100,100,"NM_012551","P08154","NM_012551","Rn.9096","adipose tissue| brain| connective tissue| heart| liver| lung| ovary| pancreas| pituitary gland| prostate| juvenile| adult","NM_012551","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_012551","GO:0005634","nucleus","inferred from direct assay","NM_012551","GO:0000976","transcription regulatory region sequence-specific DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000026303","Pfam","IPR007087","Zinc finger, C2H2","Coding",7.71,7.29,7.22,11.13,11.45,11.5]
["TC0300001583.rn.1",15.82,13.22,6.063,"up",2.59902018937507e-8,1.56313370676205e-5,"B2m","beta-2 microglobulin","chr3","+","NM_012512","coding",114087266,114093323,48,"3q35",24223,"NM_012512","RefSeq","Rattus norvegicus beta-2 microglobulin (B2m), mRNA.","chr3",100,100,"NM_012512","P07151","NM_012512","Rn.1868","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_012512","GO:0001895","retina homeostasis","not recorded","NM_012512","GO:0005615","extracellular space","inferred from direct assay","NM_012512","GO:0042802","identical protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000023017","Pfam","IPR003597","Immunoglobulin C1-set","Coding",15.84,15.69,15.92,13.28,13.17,13.22]
["TC0700002992.rn.1",14.77,12.82,3.864,"up",2.60957213148924e-8,1.56313370676205e-5,"Pabpc1","poly(A) binding protein, cytoplasmic 1","chr7","-","NM_134353","coding",75409066,75435352,366,"7q22",171350,"NM_134353","RefSeq","Rattus norvegicus poly(A) binding protein, cytoplasmic 1 (Pabpc1), mRNA.","chr7",100,100,"NM_134353","Q9EPH8","NM_134353","Rn.127813","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_134353","GO:0000184","nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","inferred from electronic annotation","NM_134353","GO:0005634","nucleus","not recorded","NM_134353","GO:0000166","nucleotide binding","inferred from electronic annotation","NM_134353","GenMAPP","Translation_Factors","ENSRNOT00000012775","Pfam","IPR000504","RNA recognition motif domain","Coding",14.77,14.72,14.81,12.85,12.81,12.81]
["TC0900001516.rn.1",11.38,5.02,82.139,"up",2.78087048552189e-8,1.61021670680003e-5,"Trem2","triggering receptor expressed on myeloid cells 2","chr9","-","NM_001106884","coding",14611546,14618023,90,"9q12",301227,"NM_001106884","RefSeq","Rattus norvegicus triggering receptor expressed on myeloid cells 2 (Trem2), mRNA.","chr9",100,100,"NM_001106884","D3ZZ89","NM_001106884","Rn.106975","brain| connective tissue| dorsal root ganglion| heart| nerve| ovary| adult","NM_001106884","GO:0002588","positive regulation of antigen processing and presentation of peptide antigen via MHC class II","not recorded","NM_001106884","GO:0016021","integral component of membrane","not recorded","NM_001106884","GO:0001530","lipopolysaccharide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018351","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",11.46,11.01,11.67,5.08,5.2,4.78]
["TC0X00002654.rn.1",16.41,8.7,209.383,"up",3.01570783972671e-8,1.61913224660652e-5,"Bgn","biglycan","chrX","-","NM_017087","coding",157319039,157331222,90,"Xq37.2",25181,"NM_017087","RefSeq","Rattus norvegicus biglycan (Bgn), mRNA.","chrX",100,100,"NM_017087","P47853","NM_017087","Rn.783","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_017087","GO:0001974","blood vessel remodeling","inferred from expression pattern","NM_017087","GO:0005578","proteinaceous extracellular matrix","inferred from electronic annotation","NM_017087","GO:0005539","glycosaminoglycan binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000023920","Pfam","IPR000372","Leucine-rich repeat-containing N-terminal","Coding",16.35,16.26,16.61,8.81,8.67,8.63]
["TC0200002783.rn.1",13.5,11.78,3.294,"up",3.05591535031388e-8,1.61913224660652e-5,"Erbb2ip","similar to Erbb2 interacting protein isoform 2","chr2","-","ENSRNOT00000070796","coding",33880864,33982331,313,"2q12-q13",365661,"ENSRNOT00000070796","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:2:53011409:53080898:-1 gene:ENSRNOG00000047137 gene_biotype:protein_coding transcript_biotype:protein_coding","chr2",100,100,"ENSRNOT00000070796","M0R9X2",{"$nulls":3},"ENSRNOT00000070796","GO:0006605","protein targeting","inferred from electronic annotation","ENSRNOT00000070796","GO:0005622","intracellular","not recorded","ENSRNOT00000070796","GO:0005178","integrin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000070796","Pfam","IPR001478","PDZ domain","Coding",13.51,13.57,13.43,11.74,11.91,11.68]
["TC0500000606.rn.1",16.26,10.14,69.551,"up",3.23169925855811e-8,1.61913224660652e-5,"Tgfbr1","transforming growth factor, beta receptor 1","chr5","+","NM_012775","coding",63056019,63124107,140,"5q22",29591,"NM_012775","RefSeq","Rattus norvegicus transforming growth factor, beta receptor 1 (Tgfbr1), mRNA.","chr5",100,100,"NM_012775","P80204","NM_012775","Rn.44402","brain| connective tissue| dorsal root ganglion| embryonic tissue| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_012775","GO:0000186","activation of MAPKK activity","not recorded","NM_012775","GO:0005768","endosome","not recorded","NM_012775","GO:0004672","protein kinase activity","not recorded","NM_012775","GenMAPP","TGF_Beta_Signaling_Pathway","ENSRNOT00000009452","Pfam","IPR000472","TGF-beta receptor/activin receptor, type I/II","Coding",16.48,16.11,16.2,10.2,10.21,10]
["TC0400001135.rn.1",10.51,8.8,3.272,"up",3.25788781048781e-8,1.61913224660652e-5,"LOC100359493","thymosin beta 10-like","chr4","+","mRNARGD2726511_1","coding",100835556,100835784,30,null,"NA","mRNARGD2726511_1","Rat Genome Database","thymosin beta 10-like","chr4",100,100,{"$nulls":24},"Coding",10.6,10.46,10.47,8.88,8.78,8.74]
["TC0600003046.rn.1",16.57,11.58,31.779,"up",3.32232483463639e-8,1.61913224660652e-5,"Lgmn","legumain","chr6","-","NM_022226","coding",126282241,126320676,180,"6q32",63865,"NM_022226","RefSeq","Rattus norvegicus legumain (Lgmn), mRNA.","chr6",100,100,"NM_022226","Q9R0J8","NM_022226","Rn.206021","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| kidney| liver| lung| muscle| pineal gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| fetus| juvenile| adult","NM_022226","GO:0001101","response to acid","inferred from electronic annotation","NM_022226","GO:0005764","lysosome","inferred from direct assay","NM_022226","GO:0004197","cysteine-type endopeptidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000010101","Pfam","IPR001096","Peptidase C13, legumain","Coding",16.59,16.43,16.69,11.71,11.72,11.31]
["TC1300000772.rn.1",13.71,6.82,118.603,"up",3.44873024721901e-8,1.61913224660652e-5,"Cd84","CD84 molecule","chr13","+","NM_001192006","coding",90260783,90277668,70,"13q24",501872,"NM_001192006","RefSeq","Rattus norvegicus CD84 molecule (Cd84), mRNA.","chr13",100,100,"NM_001192006","F1M0B5","NM_001192006","Rn.226945",{"$nulls":5},"NM_001192006","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001192006","GO:0004872","receptor activity","inferred from electronic annotation",{"$nulls":7},"Coding",13.64,13.49,14,7.18,6.36,6.93]
["TC0700000447.rn.1",14.82,7.22,194.012,"up",3.86025309458306e-8,1.75648490776783e-5,"Igf1","insulin-like growth factor 1","chr7","+","NM_001082477","coding",28412123,28491821,181,"7q12-q13",24482,"NM_001082477","RefSeq","Rattus norvegicus insulin-like growth factor 1 (Igf1), transcript variant 1, mRNA.","chr7",100,100,"NM_001082477","P08025","NM_001082477","Rn.6282","adipose tissue| brain| connective tissue| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pituitary gland| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_001082477","GO:0005614","interstitial matrix","inferred from direct assay","NM_001082477","GO:0005158","insulin receptor binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005995","Pfam","IPR016179","Insulin-like","Coding",14.94,14.74,14.79,7.41,7.38,6.88]
["TC1700002365.rn.1",11.6,7.17,21.556,"up",3.94352146698207e-8,1.75648490776783e-5,"Apbb1ip","amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein","chr17","-","NM_001100577","coding",90098953,90149192,130,"17q12.3",307171,"NM_001100577","RefSeq","Rattus norvegicus amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein (Apbb1ip), mRNA.","chr17",100,100,"NM_001100577","D3ZDZ1","NM_001100577","Rn.38834","connective tissue| embryonic tissue| kidney| ovary| spleen| thymus| metamorphosing embryo| juvenile| adult","NM_001100577","GO:0007165","signal transduction","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000024272","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024272","Pfam","IPR000159","Ras-association","Coding",11.47,11.39,11.95,7.43,7.16,6.93]
["TSUnmapped00000018.rn.1",13.48,5.96,183.546,"up",4.09433447016822e-8,1.7609950257127e-5,"RT1-DMb","RT1 class II, locus DMb",null,null,"NM_198740","coding","NA","NA",30,"20p12",294273,"NM_198740","RefSeq","Rattus norvegicus RT1 class II, locus DMb (RT1-DMb), mRNA.",null,100,100,"NM_198740","Q31253","NM_198740","Rn.5892","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| placenta| small intestine| spleen| thymus| juvenile| adult","NM_198740","GO:0002399","MHC class II protein complex assembly","not recorded","NM_198740","GO:0042613","MHC class II protein complex","not recorded","NM_198740","GO:0023026","MHC class II protein complex binding","not recorded",{"$nulls":7},"Coding",13.52,12.93,13.99,6.18,5.85,5.84]
["TC0700000579.rn.1",15.12,8.77,81.572,"up",4.20380720239386e-8,1.7609950257127e-5,"Dcn","decorin","chr7","+","NM_024129","coding",38742054,38782282,107,"7q13",29139,"NM_024129","RefSeq","Rattus norvegicus decorin (Dcn), mRNA.","chr7",100,100,"NM_024129","Q01129","NM_024129","Rn.106103","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| fetus| juvenile| adult","NM_024129","GO:0001822","kidney development","inferred from expression pattern","NM_024129","GO:0005578","proteinaceous extracellular matrix","inferred from direct assay","NM_024129","GO:0005518","collagen binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000006070","Pfam","IPR000372","Leucine-rich repeat-containing N-terminal","Coding",15.41,14.98,14.96,8.72,8.67,8.91]
["TC1600000157.rn.1",11.37,9.26,4.317,"up",4.25777393816899e-8,1.7609950257127e-5,"Wapal","wings apart-like homolog (Drosophila)","chr16","+","ENSRNOT00000060770","coding",11029459,11108867,370,"16p15",290577,"ENSRNOT00000060770","ENSEMBL","ensembl:known chromosome:Rnor_5.0:16:9357510:9432068:1 gene:ENSRNOG00000039630 gene_biotype:protein_coding transcript_biotype:protein_coding","chr16",100,100,"ENSRNOT00000060770","D4ADT3","ENSRNOT00000060770","Rn.232259","colon| fetus","ENSRNOT00000060770","GO:0007067","mitotic nuclear division","not recorded","ENSRNOT00000060770","GO:0000785","chromatin","inferred from electronic annotation","ENSRNOT00000060770","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000060770","Pfam","IPR022771","Wings apart-like protein","Coding",11.26,11.36,11.5,9.16,9.3,9.32]
["TC0X00001431.rn.1",11.25,6.27,31.559,"up",4.78251825988545e-8,1.82046448931665e-5,"Gpr34","G protein-coupled receptor 34","chrX","-","NM_001024925","coding",10022986,10043293,60,"Xq12",554353,"NM_001024925","RefSeq","Rattus norvegicus G protein-coupled receptor 34 (Gpr34), mRNA.","chrX",100,100,"NM_001024925","Q6XCE7","NM_001024925","Rn.163444","adult","NM_001024925","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001024925","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001024925","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000060988","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",11.21,11.08,11.45,6.26,6.66,5.88]
["TC1300002277.rn.1",14.29,7.52,109.137,"up",4.80383509999616e-8,1.82046448931665e-5,"LOC498276","Fc gamma receptor II beta","chr13","-","BC159405","coding",89420840,89435099,63,"13q24",498276,"BC159405","GenBank","Rattus norvegicus Fc gamma receptor II beta, mRNA (cDNA clone MGC:188666 IMAGE:7459664), complete cds.","chr13",100,100,"BC159405","B0K007","BC159405","Rn.6050","connective tissue| dorsal root ganglion| eye| liver| lung| ovary| placenta| spleen| juvenile| adult","BC159405","GO:0021675","nerve development","inferred from expression pattern","BC159405","GO:0005575","cellular_component","no biological data available","BC159405","GO:0019770","IgG receptor activity","inferred from direct assay",{"$nulls":7},"Coding",14.59,14.11,14.17,7.66,7.78,7.12]
["TC1400000117.rn.1",5.72,7.28,-2.949,"down",4.88708763876137e-8,1.82046448931665e-5,"Hsd17b13","hydroxysteroid (17-beta) dehydrogenase 13","chr14","+","NM_001009684","coding",7113542,7128218,90,"14p22",305150,"NM_001009684","RefSeq","Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 13 (Hsd17b13), mRNA.","chr14",100,100,"NM_001009684","Q5M875","NM_001009684","Rn.25104","connective tissue| heart| liver| placenta| juvenile| adult","NM_001009684","GO:0055114","oxidation-reduction process","inferred from electronic annotation","NM_001009684","GO:0005576","extracellular region","inferred from electronic annotation","NM_001009684","GO:0016491","oxidoreductase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000038188","Pfam","IPR002198","Short-chain dehydrogenase/reductase SDR","Coding",5.81,5.58,5.78,7.27,7.33,7.24]
["TC0700001422.rn.1",12.51,7.08,43.111,"up",4.98714967257274e-8,1.82046448931665e-5,"Cyth4","cytohesin 4","chr7","+","NM_001130577","coding",119820533,119845003,130,"7q34",500906,"NM_001130577","RefSeq","Rattus norvegicus cytohesin 4 (Cyth4), mRNA.","chr7",100,100,"NM_001130577","D3ZHR6","NM_001130577","Rn.154985","spleen","NM_001130577","GO:0016192","vesicle-mediated transport","not recorded","NM_001130577","GO:0005802","trans-Golgi network","not recorded","NM_001130577","GO:0005086","ARF guanyl-nucleotide exchange factor activity","not recorded",{"$nulls":3},"ENSRNOT00000056221","Pfam","IPR000904","Sec7 domain","Coding",12.47,12.36,12.69,7.08,7.15,7.01]
["TC0500000628.rn.1",16.78,10.63,71.012,"up",5.00463014903458e-8,1.82046448931665e-5,"Tgfbr1","ENCODES a protein that exhibits ATP binding AND  protein complex binding AND  protein heterodimerization activity AND  INVOLVED IN aging AND  digestive tract development AND  embryo development AND  PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway AND  altered transforming growth factor-beta Smad dependent signaling pathway AND  colorectal cancer pathway AND  ASSOCIATED WITH Hypertension  Pulmonary AND  Kidney Diseases AND  Leiomyoma AND  FOUND IN apical plasma membrane AND  basolateral plasma membrane AND  caveola AND  INTERACTS WITH 17beta-estradiol AND  2 3 7 8-tetrachlorodibenzodioxine AND  allyl alcohol","chr5","+","mRNARGD7651352_1","coding",64566771,64585196,90,null,"NA","mRNARGD7651352_1","Rat Genome Database","ENCODES a protein that exhibits ATP binding AND  protein complex binding AND  protein heterodimerization activity AND  INVOLVED IN aging AND  digestive tract development AND  embryo development AND  PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway AND  altered transforming growth factor-beta Smad dependent signaling pathway AND  colorectal cancer pathway AND  ASSOCIATED WITH Hypertension  Pulmonary AND  Kidney Diseases AND  Leiomyoma AND  FOUND IN apical plasma membrane AND  basolateral plasma membrane AND  caveola AND  INTERACTS WITH 17beta-estradiol AND  2 3 7 8-tetrachlorodibenzodioxine AND  allyl alcohol","chr5",100,100,"ENSRNOT00000073192","M0R9M6",{"$nulls":3},"ENSRNOT00000073192","GO:0006468","protein phosphorylation","inferred from electronic annotation","ENSRNOT00000073192","GO:0016020","membrane","inferred from electronic annotation","ENSRNOT00000073192","GO:0004672","protein kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073192","Pfam","IPR000472","TGF-beta receptor/activin receptor, type I/II","Coding",16.97,16.62,16.75,10.68,10.71,10.49]
["TC0900001440.rn.1",11.11,6.16,30.91,"up",5.0303549298946e-8,1.82046448931665e-5,"Adgre1","EGF-like module containing, mucin-like, hormone receptor-like 1","chr9","-","NM_001007557","coding",9431888,9585854,220,"9q11",316137,"NM_001007557","RefSeq","Rattus norvegicus EGF-like module containing, mucin-like, hormone receptor-like 1 (Emr1), mRNA.","chr9",100,100,"NM_001007557","Q5Y4N8","NM_001007557","Rn.205884","eye| liver| ovary| placenta| adult","NM_001007557","GO:0007218","neuropeptide signaling pathway","inferred from electronic annotation","NM_001007557","GO:0009897","external side of plasma membrane","inferred from electronic annotation","NM_001007557","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073926","Pfam","IPR000203","GPS motif","Coding",10.93,11.06,11.34,6.3,6.43,5.75]
["TC0100006121.rn.1",11.07,7,16.795,"up",5.22583431284824e-8,1.84617759882032e-5,"Slco2b1","solute carrier organic anion transporter family, member 2b1","chr1","-","NM_080786","coding",164623580,164671592,186,"1q32",140860,"NM_080786","RefSeq","Rattus norvegicus solute carrier organic anion transporter family, member 2b1 (Slco2b1), mRNA.","chr1",100,100,"NM_080786","Q9JHI3","NM_080786","Rn.44538","brain| connective tissue| dorsal root ganglion| heart| kidney| liver| lung| ovary| pituitary gland| prostate| spleen| juvenile| adult","NM_080786","GO:0001889","liver development","inferred from expression pattern","NM_080786","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_080786","GO:0008514","organic anion transmembrane transporter activity","not recorded",{"$nulls":3},"ENSRNOT00000024281","Pfam","IPR004156","Organic anion transporter polypeptide OATP","Coding",10.89,10.89,11.44,6.97,7.18,6.85]
["TC0400003862.rn.1",14.84,4.27,1520.152,"up",5.31396465033769e-8,1.84617759882032e-5,"Clec7a","C-type lectin domain family 7, member A","chr4","-","NM_001173386","coding",163216162,163227334,80,"4q42",502902,"NM_001173386","RefSeq","Rattus norvegicus C-type lectin domain family 7, member A (Clec7a), mRNA.","chr4",100,100,"NM_001173386","B2RYG9","NM_001173386","Rn.15743","lung| prostate| juvenile| adult","NM_001173386","GO:0001878","response to yeast","not recorded","NM_001173386","GO:0009897","external side of plasma membrane","inferred from electronic annotation","NM_001173386","GO:0001846","opsonin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000052373","Pfam","IPR001304","C-type lectin","Coding",15.37,14.52,14.64,4.29,4.4,4.12]
["TC1400000255.rn.1",12.93,7.24,51.625,"up",6.0123382325094e-8,2.04784955758668e-5,"Naaa","N-acylethanolamine acid amidase","chr14","+","NM_001010967","coding",17283255,17302364,105,"14p22",497009,"NM_001010967","RefSeq","Rattus norvegicus N-acylethanolamine acid amidase (Naaa), mRNA.","chr14",100,100,"NM_001010967","Q5KTC7","NM_001010967","Rn.101943","adipose tissue| brain| colon| eye| lung| placenta| prostate| thymus| fetus| adult","NM_001010967","GO:0006629","lipid metabolic process","inferred from electronic annotation","NM_001010967","GO:0005737","cytoplasm","not recorded","NM_001010967","GO:0008134","transcription factor binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000003102","Pfam","IPR003199","Choloylglycine hydrolase/Peptidase C59 family","Coding",13.11,12.41,13.26,7.2,7.29,7.22]
["TC0X00000552.rn.1",14.09,8.45,49.867,"up",6.29046795819803e-8,2.08833546517526e-5,"Msn","moesin","chrX","+","NM_030863","coding",65226693,65295815,180,"Xq31",81521,"NM_030863","RefSeq","Rattus norvegicus moesin (Msn), mRNA.","chrX",100,100,"NM_030863","O35763","NM_030863","Rn.2762","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| nerve| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_030863","GO:0007159","leukocyte cell-cell adhesion","inferred from electronic annotation","NM_030863","GO:0001931","uropod","inferred from electronic annotation","NM_030863","GO:0003725","double-stranded RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000040148","Pfam","IPR011259","Ezrin/radixin/moesin, C-terminal","Coding",14.32,13.85,14.11,8.56,8.5,8.29]
["TC1700002218.rn.1",11.43,9.27,4.469,"up",6.53056307266373e-8,2.08833546517526e-5,"Frmd4a","FERM domain containing 4A","chr17","-","NM_001191821","coding",77642302,77918210,232,"17q12.3",307128,"NM_001191821","RefSeq","Rattus norvegicus FERM domain containing 4A (Frmd4a), mRNA.","chr17",100,100,"ENSRNOT00000045765","D3ZU85","NM_001191821","Rn.226301","brain| testis| metamorphosing embryo","NM_001191821","GO:0090162","establishment of epithelial cell polarity","inferred from electronic annotation","NM_001191821","GO:0005923","tight junction","inferred from electronic annotation","NM_001191821","GO:0030674","protein binding, bridging","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000045765","Pfam","IPR018980","FERM, C-terminal PH-like domain","Coding",11.29,11.44,11.57,9.34,9.29,9.18]
["TC1200000452.rn.1",11.78,5.13,100.427,"up",6.7402588423017e-8,2.08833546517526e-5,"Ncf1","neutrophil cytosolic factor 1","chr12","+","NM_053734","coding",25497089,25506303,110,"12q12",114553,"NM_053734","RefSeq","Rattus norvegicus neutrophil cytosolic factor 1 (Ncf1), mRNA.","chr12",100,100,"NM_053734","F1M707","NM_053734","Rn.38575","brain| connective tissue| prostate| spleen| juvenile| adult","NM_053734","GO:0001878","response to yeast","inferred from electronic annotation","NM_053734","GO:0005737","cytoplasm","not recorded","NM_053734","GO:0016175","superoxide-generating NADPH oxidase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000002028","Pfam","IPR001452","SH3 domain","Coding",11.72,12.11,11.5,5.2,4.95,5.25]
["TC0400002848.rn.1",14.22,9.87,20.393,"up",7.36056463486868e-8,2.08833546517526e-5,"Tmem176b","transmembrane protein 176B","chr4","-","NM_001270589","coding",78450716,78458594,190,"4q24",171411,"NM_001270589","RefSeq","Rattus norvegicus transmembrane protein 176B (Tmem176b), transcript variant 2, mRNA.","chr4",100,100,"NM_001270589","Q925D4","NM_001270589","Rn.26876","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001270589","GO:0030154","cell differentiation","inferred from electronic annotation","NM_001270589","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000011327","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000011327","Pfam","IPR007237","CD20-like","Coding",14.19,14.02,14.46,10.04,10.11,9.45]
["TC0400000867.rn.1",16.05,9.81,75.584,"up",7.40859734283514e-8,2.08833546517526e-5,"Tmem176a","transmembrane protein 176A","chr4","+","NM_001039008","coding",78458638,78462687,80,"4q24",297077,"NM_001039008","RefSeq","Rattus norvegicus transmembrane protein 176A (Tmem176a), mRNA.","chr4",100,100,"NM_001039008","Q4G068","NM_001039008","Rn.17071","adipose tissue| adrenal gland| colon| connective tissue| dorsal root ganglion| kidney| liver| lung| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| juvenile| adult","NM_001039008","GO:2001199","negative regulation of dendritic cell differentiation","inferred from electronic annotation","NM_001039008","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000049891","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000049891","Pfam","IPR007237","CD20-like","Coding",15.98,15.75,16.41,10.24,10.01,9.19]
["TC0600001639.rn.1",14.01,7.19,112.986,"up",7.42740787467602e-8,2.08833546517526e-5,"Pld4","phospholipase D family, member 4","chr6","+","NM_001126288","coding",137323713,137331231,139,"6q32",362792,"NM_001126288","RefSeq","Rattus norvegicus phospholipase D family, member 4 (Pld4), mRNA.","chr6",100,100,"NM_001126288","B1WBV8","NM_001126288","Rn.6379","brain| connective tissue| eye| heart| kidney| lung| prostate| thymus| juvenile| adult","NM_001126288","GO:0002244","hematopoietic progenitor cell differentiation","not recorded","NM_001126288","GO:0005634","nucleus","not recorded","NM_001126288","GO:0003824","catalytic activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000029017","Pfam","IPR001736","Phospholipase D/Transphosphatidylase","Coding",13.82,13.43,14.77,7.24,7.23,7.1]
["TC1500000689.rn.1",18.47,15.51,7.781,"up",7.44616335244835e-8,2.08833546517526e-5,"Ctsb","cathepsin B","chr15","+","NM_022597","coding",46316726,46337648,140,"15p12",64529,"NM_022597","RefSeq","Rattus norvegicus cathepsin B (Ctsb), mRNA.","chr15",100,100,"NM_022597","P00787","NM_022597","Rn.100909","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_022597","GO:0006508","proteolysis","inferred from direct assay","NM_022597","GO:0005576","extracellular region","inferred from direct assay","NM_022597","GO:0004175","endopeptidase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000014177","Pfam","IPR000668","Peptidase C1A, papain C-terminal","Coding",18.53,18.41,18.48,15.49,15.7,15.35]
["TSUnmapped00000054.rn.1",12.86,10.96,3.732,"up",7.49238965655519e-8,2.08833546517526e-5,"Rpl7a","ribosomal protein L7a",null,null,"NM_001114391","coding","NA","NA",30,null,296596,"NM_001114391","RefSeq","Rattus norvegicus ribosomal protein L7a (Rpl7a), mRNA.",null,100,100,"NM_001114391","B0K021","NM_001114391","Rn.144857","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_001114391","GO:0042254","ribosome biogenesis","inferred from electronic annotation","NM_001114391","GO:0005634","nucleus","not recorded","NM_001114391","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":7},"Coding",12.86,12.95,12.76,11,10.88,10.99]
["TC0500001691.rn.1",11.76,7.95,14.026,"up",8.04323517517369e-8,2.14632810094807e-5,"Fuca1","fucosidase, alpha-L- 1, tissue","chr5","+","NM_012562","coding",154269296,154286549,130,"5q36",24375,"NM_012562","RefSeq","Rattus norvegicus fucosidase, alpha-L- 1, tissue (Fuca1), mRNA.","chr5",100,100,"NM_012562","P17164","NM_012562","Rn.3469","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| juvenile| adult","NM_012562","GO:0006004","fucose metabolic process","not recorded","NM_012562","GO:0005764","lysosome","inferred from direct assay","NM_012562","GO:0004560","alpha-L-fucosidase activity","not recorded",{"$nulls":3},"ENSRNOT00000012455","Pfam","IPR000933","Glycoside hydrolase, family 29","Coding",11.85,11.42,12.01,8.11,8.01,7.73]
["TC1300001896.rn.1",13.38,6.06,159.786,"up",8.14170145448967e-8,2.14632810094807e-5,"Fcgr2b","Fc fragment of IgG, low affinity IIb, receptor (CD32)","chr13","-","NM_175756","coding",89329298,89343916,120,"13q24",289211,"NM_175756","RefSeq","Rattus norvegicus Fc fragment of IgG, low affinity IIb, receptor (CD32) (Fcgr2b), mRNA.","chr13",100,100,"NM_175756","Q63203","NM_175756","Rn.33323","connective tissue| liver| pancreas| spleen| juvenile| adult","NM_175756","GO:0001811","negative regulation of type I hypersensitivity","inferred from electronic annotation","NM_175756","GO:0005886","plasma membrane","inferred from electronic annotation","NM_175756","GO:0019864","IgG binding","inferred from electronic annotation",{"$nulls":7},"Coding",13.18,12.88,14.09,6.11,6.53,5.53]
["TC0300000811.rn.1",13.51,9.31,18.379,"up",9.48674713587133e-8,2.36940801631192e-5,"Itga6","integrin, alpha 6","chr3","+","NM_053725","coding",58442904,58515124,384,"3q22",114517,"NM_053725","RefSeq","Rattus norvegicus integrin, alpha 6 (Itga6), mRNA.","chr3",100,100,"NM_053725","G3V667","NM_053725","Rn.22382","brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| lung| ovary| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_053725","GO:0007160","cell-matrix adhesion","inferred from electronic annotation","NM_053725","GO:0005604","basement membrane","inferred from electronic annotation","NM_053725","GO:0005178","integrin binding","inferred from electronic annotation","NM_053725","GenMAPP","Integrin-mediated_cell_adhesion_KEGG","ENSRNOT00000002075","Pfam","IPR013517","FG-GAP repeat","Coding",13.3,13.3,13.94,9.2,9.49,9.24]
["TC0100002142.rn.1",14.18,7.62,94.353,"up",9.54801457266907e-8,2.36940801631192e-5,"Ucp2","uncoupling protein 2 (mitochondrial, proton carrier)","chr1","+","NM_019354","coding",165506328,165512745,124,"1q32",54315,"NM_019354","RefSeq","Rattus norvegicus uncoupling protein 2 (mitochondrial, proton carrier) (Ucp2), mRNA.","chr1",100,100,"NM_019354","P56500","NM_019354","Rn.13333","dorsal root ganglion| heart| liver| lung| ovary| pancreas| prostate| juvenile| adult","NM_019354","GO:0000303","response to superoxide","inferred from direct assay","NM_019354","GO:0005739","mitochondrion","inferred from direct assay","NM_019354","GO:0003674","molecular_function","no biological data available","NM_019354","GenMAPP","Electron_Transport_Chain","ENSRNOT00000024156","Pfam","IPR018108","Mitochondrial substrate/solute carrier","Coding",14.17,14.06,14.32,7.67,7.94,7.26]
["TC0900000594.rn.1",14.09,6.13,249,"up",9.68450276773501e-8,2.36942954335669e-5,"Col3a1","collagen, type III, alpha 1","chr9","+","NM_032085","coding",52023264,52059221,590,"9q22",84032,"NM_032085","RefSeq","Rattus norvegicus collagen, type III, alpha 1 (Col3a1), mRNA.","chr9",100,100,"NM_032085","P13941","NM_032085","Rn.3247","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_032085","GO:0001501","skeletal system development","inferred from expression pattern","NM_032085","GO:0005581","collagen trimer","not recorded","NM_032085","GO:0005178","integrin binding","not recorded","NM_032085","GenMAPP","Inflammatory_Response_Pathway","ENSRNOT00000004956","Pfam","IPR000885","Fibrillar collagen, C-terminal","Coding",13.9,14.28,14.1,6.29,5.93,6.16]
["TC1700001978.rn.1",7.52,9.76,-4.724,"down",1.00291785839638e-7,2.38678786072748e-5,"Idi1","isopentenyl-diphosphate delta isomerase 1","chr17","-","NM_053539","coding",57976259,57984121,70,"17q12.1",89784,"NM_053539","RefSeq","Rattus norvegicus isopentenyl-diphosphate delta isomerase 1 (Idi1), mRNA.","chr17",100,100,"NM_053539","O35760","NM_053539","Rn.10780","brain| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| nerve| ovary| pancreas| prostate| small intestine| testis| metamorphosing embryo| juvenile| adult","NM_053539","GO:0006695","cholesterol biosynthetic process","traceable author statement","NM_053539","GO:0005739","mitochondrion","inferred from electronic annotation","NM_053539","GO:0000287","magnesium ion binding","inferred from electronic annotation","NM_053539","GenMAPP","Cholesterol_Biosynthesis","ENSRNOT00000022389","Pfam","IPR000086","NUDIX hydrolase domain","Coding",7.7,7.44,7.41,9.78,9.79,9.72]
["TC0700000755.rn.1",10.58,6.2,20.821,"up",1.00806486651353e-7,2.38678786072748e-5,"Lyc2","lysozyme C type 2","chr7","+","NM_001128494","coding",60316045,60323610,79,null,688047,"NM_001128494","RefSeq","Rattus norvegicus lysozyme C type 2 (Lyc2), mRNA.","chr7",100,100,"NM_001128494","B2RYD4","NM_001128494","Rn.162941","prostate| juvenile| adult","NM_001128494","GO:0016998","cell wall macromolecule catabolic process","inferred from electronic annotation","NM_001128494","GO:0005576","extracellular region","inferred from electronic annotation","NM_001128494","GO:0003796","lysozyme activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000064594","Pfam","IPR001916","Glycoside hydrolase, family 22","Coding",10.82,10.56,10.35,6.25,6.44,5.91]
["TC2000001306.rn.1",13.11,5.68,172.446,"up",1.02403011033472e-7,2.38678786072748e-5,"Itgb2","integrin, beta 2","chr20","-","NM_001037780","coding",11777773,11815647,204,"20p12",309684,"NM_001037780","RefSeq","Rattus norvegicus integrin, beta 2 (Itgb2), mRNA.","chr20",100,100,"NM_001037780","B2RYB8","NM_001037780","Rn.42962","brain| colon| connective tissue| eye| liver| lung| placenta| prostate| spleen| thymus| fetus| juvenile| adult","NM_001037780","GO:0002523","leukocyte migration involved in inflammatory response","inferred from mutant phenotype","NM_001037780","GO:0005886","plasma membrane","inferred from direct assay","NM_001037780","GO:0001948","glycoprotein binding","not recorded",{"$nulls":3},"ENSRNOT00000001639","Pfam","IPR002369","Integrin beta subunit, N-terminal","Coding",13.33,12.46,13.53,5.61,5.94,5.48]
["TC0200002686.rn.1",9.74,11.97,-4.691,"down",1.03050537996984e-7,2.38678786072748e-5,"Hmgcr","3-hydroxy-3-methylglutaryl-CoA reductase","chr2","-","NM_013134","coding",27480215,27500736,263,"2q12",25675,"NM_013134","RefSeq","Rattus norvegicus 3-hydroxy-3-methylglutaryl-CoA reductase (Hmgcr), mRNA.","chr2",100,100,"NM_013134","P51639","NM_013134","Rn.9437","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_013134","GO:0006695","cholesterol biosynthetic process","inferred from direct assay","NM_013134","GO:0005778","peroxisomal membrane","inferred from electronic annotation","NM_013134","GO:0004420","hydroxymethylglutaryl-CoA reductase (NADPH) activity","inferred from electronic annotation","NM_013134","GenMAPP","Cholesterol_Biosynthesis","ENSRNOT00000022055","Pfam","IPR002202","Hydroxymethylglutaryl-CoA reductase, class I/II","Coding",9.68,9.64,9.89,12.14,11.88,11.89]
["TC0500001570.rn.1",14.75,8.11,99.733,"up",1.07723883974056e-7,2.4302228422251e-5,"Laptm5","lysosomal protein transmembrane 5","chr5","+","NM_053538","coding",149047442,149069719,120,"5q36",89783,"NM_053538","RefSeq","Rattus norvegicus lysosomal protein transmembrane 5 (Laptm5), mRNA.","chr5",100,100,"NM_053538","Q6P9Z7","NM_053538","Rn.24799","adipose tissue| brain| connective tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| juvenile| adult","NM_053538","GO:0006810","transport","inferred from electronic annotation","NM_053538","GO:0005764","lysosome","inferred from direct assay",{"$nulls":7},"ENSRNOT00000015198","Pfam","IPR004687","Lysosomal-associated transmembrane protein 4/5","Coding",14.77,14.45,15.03,8.59,7.97,7.78]
["TC0800000013.rn.1",9.46,5.97,11.236,"up",1.10055088346824e-7,2.45098325599062e-5,"Casp4","caspase 4, apoptosis-related cysteine peptidase","chr8","+","NM_053736","coding",2616391,2651693,80,"8q11",114555,"NM_053736","RefSeq","Rattus norvegicus caspase 4, apoptosis-related cysteine peptidase (Casp4), mRNA.","chr8",100,100,"NM_053736","Q3MHS1","NM_053736","Rn.16195","colon| connective tissue| heart| lung| pancreas| pituitary gland| placenta| prostate| thymus| juvenile| adult","NM_053736","GO:0006508","proteolysis","inferred from electronic annotation","NM_053736","GO:0005737","cytoplasm","not recorded","NM_053736","GO:0004197","cysteine-type endopeptidase activity","not recorded","NM_053736","GenMAPP","Apoptosis","ENSRNOT00000061973","Pfam","IPR001315","CARD domain","Coding",9.4,9.19,9.79,5.92,6.06,5.94]
["TC2000001800.rn.1",11.79,6.55,37.792,"up",1.13801103163691e-7,2.49924286769086e-5,"Clic1","chloride intracellular channel 1","chr20","+","NM_001002807","coding",5040319,5049166,80,"20p12",406864,"NM_001002807","RefSeq","Rattus norvegicus chloride intracellular channel 1 (Clic1), mRNA.","chr20",100,100,"NM_001002807","Q6MG61","NM_001002807","Rn.203139","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_001002807","GO:0006821","chloride transport","not recorded","NM_001002807","GO:0005615","extracellular space","not recorded","NM_001002807","GO:0005247","voltage-gated chloride channel activity","traceable author statement",{"$nulls":7},"Coding",12,11.57,11.79,6.46,6.66,6.54]
["TC1300001512.rn.1",13.21,5.92,156.498,"up",1.15099550639151e-7,2.49924286769086e-5,"Ptprc","protein tyrosine phosphatase, receptor type, C","chr13","-","NM_001109887","coding",55061561,55174127,378,"13q13",24699,"NM_001109887","RefSeq","Rattus norvegicus protein tyrosine phosphatase, receptor type, C (Ptprc), transcript variant 3, mRNA.","chr13",100,100,"NM_001109887","P04157","NM_001109887","Rn.90166","brain| colon| connective tissue| embryonic tissue| eye| liver| lung| pancreas| placenta| prostate| spleen| thymus| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_001109887","GO:0005622","intracellular","not recorded","NM_001109887","GO:0004725","protein tyrosine phosphatase activity","not recorded",{"$nulls":3},"ENSRNOT00000000814","Pfam","IPR000242","Protein-tyrosine phosphatase, receptor/non-receptor type","Coding",13.37,12.92,13.35,5.81,5.99,5.95]
["TC0X00002180.rn.1",12.22,11.07,2.219,"up",1.20598351761698e-7,2.58631354129933e-5,"LOC100910180","60S ribosomal protein L36a-like","chrX","-","mRNARGD7592145_1","coding",104932886,104933227,30,null,"NA","mRNARGD7592145_1","Rat Genome Database","60S ribosomal protein L36a-like","chrX",100,100,{"$nulls":24},"Coding",12.27,12.14,12.25,11.02,11.13,11.06]
["TC1400001438.rn.1",12.48,9.27,9.254,"up",1.23536257217248e-7,2.59283368332039e-5,"Bmp2k","BMP2 inducible kinase","chr14","-","ENSRNOT00000002795","coding",14126028,14218601,230,null,"NA","ENSRNOT00000002795","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:14:14095530:14135927:-1 gene:ENSRNOG00000002040 gene_biotype:protein_coding transcript_biotype:protein_coding","chr14",100,100,"ENSRNOT00000002795","D4A0Z6","ENSRNOT00000002795","Rn.167503",null,"ENSRNOT00000002795","GO:0006468","protein phosphorylation","inferred from electronic annotation","ENSRNOT00000002795","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000002795","GO:0004672","protein kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002795","Pfam","IPR000719","Protein kinase domain","Coding",12.42,12.42,12.6,9.27,9.35,9.2]
["TC1300001537.rn.1",16.23,10.04,73.009,"up",1.24506599158797e-7,2.59283368332039e-5,"Cfh","complement factor H","chr13","-","NM_130409","coding",56978585,57080549,240,"13q13",155012,"NM_130409","RefSeq","Rattus norvegicus complement factor H (Cfh), mRNA.","chr13",100,100,"NM_130409","F1M983","NM_130409","Rn.101777","adipose tissue| brain| connective tissue| eye| heart| kidney| liver| lung| ovary| pineal gland| prostate| juvenile| adult","NM_130409","GO:0006956","complement activation","inferred from expression pattern","NM_130409","GO:0005615","extracellular space","inferred from direct assay","NM_130409","GO:0001851","complement component C3b binding","not recorded",{"$nulls":3},"ENSRNOT00000017749","Pfam","IPR000436","Sushi/SCR/CCP","Coding",16.37,16.16,16.17,9.79,10.17,10.15]
["TC1900000992.rn.1",11.24,13.97,-6.635,"down",1.25380248344317e-7,2.59283368332039e-5,"Cx3cl1","chemokine (C-X3-C motif) ligand 1","chr19","-","NM_134455","coding",10644248,10653802,48,"19p12",89808,"NM_134455","RefSeq","Rattus norvegicus chemokine (C-X3-C motif) ligand 1 (Cx3cl1), mRNA.","chr19",100,100,"NM_134455","O55145","NM_134455","Rn.107266","brain| colon| eye| heart| kidney| lung| ovary| pituitary gland| prostate| metamorphosing embryo| fetus| juvenile| adult","NM_134455","GO:0001666","response to hypoxia","inferred from expression pattern","NM_134455","GO:0005576","extracellular region","inferred from electronic annotation","NM_134455","GO:0008009","chemokine activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000022128","Pfam","IPR001811","Chemokine interleukin-8-like domain","Coding",11.15,11.03,11.54,13.89,14.11,13.9]
["TC0100008028.rn.1",12.32,6.26,66.718,"up",1.31381590266429e-7,2.68497600531546e-5,"Tgfb1","transforming growth factor, beta 1","chr1","+","NM_021578","coding",82480875,82497196,70,"1q22",59086,"NM_021578","RefSeq","Rattus norvegicus transforming growth factor, beta 1 (Tgfb1), mRNA.","chr1",100,100,"NM_021578","P17246","NM_021578","Rn.40136","connective tissue| dorsal root ganglion| eye| kidney| liver| pancreas| prostate| spleen| thymus| juvenile| adult",{"$nulls":4},"NM_021578","GO:0005578","proteinaceous extracellular matrix","inferred from electronic annotation","NM_021578","GO:0001948","glycoprotein binding","not recorded","NM_021578","GenMAPP","Cell_cycle_KEGG","ENSRNOT00000028051","Pfam","IPR001111","Transforming growth factor-beta, N-terminal","Coding",12.23,11.98,12.75,6.2,6.34,6.23]
["TC0600002284.rn.1",9.64,5.1,23.264,"up",1.35971970943225e-7,2.74647570611019e-5,"Pik3cg","phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma","chr6","-","ENSRNOT00000012487","coding",51465696,51501150,189,"6q16",298947,"ENSRNOT00000012487","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:6:61110111:61139363:-1 gene:ENSRNOG00000009385 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000012487","D3ZFJ0",{"$nulls":3},"ENSRNOT00000012487","GO:0002675","positive regulation of acute inflammatory response","inferred from mutant phenotype","ENSRNOT00000012487","GO:0005737","cytoplasm","not recorded","ENSRNOT00000012487","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012487","Pfam","IPR000341","Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain","Coding",9.95,9.28,9.69,4.99,5.04,5.28]
["TC0400003583.rn.1",14.97,13.4,2.969,"up",1.39302222188966e-7,2.78140103637302e-5,"Rpl32","ribosomal protein L32","chr4","-","NM_013226","coding",147715480,147719057,52,"4q42",28298,"NM_013226","RefSeq","Rattus norvegicus ribosomal protein L32 (Rpl32), mRNA.","chr4",100,100,"NM_013226","P62912","NM_013226","Rn.110966","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| ovary| pancreas| pituitary gland| prostate| spleen| vibrissa| metamorphosing embryo| juvenile| adult","NM_013226","GO:0006412","translation","inferred from electronic annotation","NM_013226","GO:0022625","cytosolic large ribosomal subunit","not recorded","NM_013226","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000014493","Pfam","IPR001515","Ribosomal protein L32e","Coding",15.11,14.87,14.92,13.44,13.34,13.42]
["TC0200004336.rn.1",13.58,15.8,-4.659,"down",1.41066951592701e-7,2.78295892417157e-5,"Atp1a1","ATPase, Na+/K+ transporting, alpha 1 polypeptide","chr2","-","NM_012504","coding",204003708,204032034,294,"2q34",24211,"NM_012504","RefSeq","Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide (Atp1a1), mRNA.","chr2",100,100,"NM_012504","P06685","NM_012504","Rn.2992","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_012504","GO:0002026","regulation of the force of heart contraction","inferred from electronic annotation","NM_012504","GO:0005768","endosome","inferred from direct assay","NM_012504","GO:0005391","sodium:potassium-exchanging ATPase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000040430","Pfam","IPR004014","Cation-transporting P-type ATPase, N-terminal","Coding",13.57,13.36,13.8,15.7,15.89,15.81]
["TC0700000324.rn.1",12.38,5.19,146.018,"up",1.48723473332656e-7,2.78295892417157e-5,"Myo1f","myosin IF","chr7","+","NM_001108076","coding",18440741,18491468,300,"7q12",314654,"NM_001108076","RefSeq","Rattus norvegicus myosin IF (Myo1f), mRNA.","chr7",100,100,"NM_001108076","D4A7X9","NM_001108076","Rn.198774","brain| eye| liver| ovary| pituitary gland| spleen| juvenile| adult","NM_001108076","GO:0002446","neutrophil mediated immunity","not recorded","NM_001108076","GO:0005623","cell","not recorded","NM_001108076","GO:0003774","motor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000011513","Pfam","IPR001452","SH3 domain","Coding",12.63,12.13,12.38,5.12,5.27,5.19]
["TC1000001453.rn.1",13.96,6.48,178.527,"up",1.50134581807022e-7,2.78295892417157e-5,"Col1a1","collagen, type I, alpha 1","chr10","+","NM_053304","coding",82745796,82762790,540,"10q31",29393,"NM_053304","RefSeq","Rattus norvegicus collagen, type I, alpha 1 (Col1a1), mRNA.","chr10",100,100,"NM_053304","P02454","NM_053304","Rn.2953","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pineal gland| placenta| prostate| spleen| testis| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_053304","GO:0001501","skeletal system development","not recorded","NM_053304","GO:0005576","extracellular region","traceable author statement","NM_053304","GO:0005201","extracellular matrix structural constituent","inferred from electronic annotation","NM_053304","GenMAPP","Inflammatory_Response_Pathway","ENSRNOT00000005311","Pfam","IPR000885","Fibrillar collagen, C-terminal","Coding",13.77,14.05,14.06,6.44,6.35,6.65]
["TC0700001936.rn.1",13.52,7.25,77.172,"up",1.50644737021755e-7,2.78295892417157e-5,"Nckap1l","NCK associated protein 1 like","chr7","+","NM_001108119","coding",145068251,145113507,359,"7q36",315348,"NM_001108119","RefSeq","Rattus norvegicus NCK associated protein 1 like (Nckap1l), mRNA.","chr7",100,100,"NM_001108119","D3Z8V4","NM_001108119","Rn.149002","adipose tissue| connective tissue| lung| pituitary gland| placenta| spleen| thymus| juvenile| adult","NM_001108119","GO:0001782","B cell homeostasis","inferred from electronic annotation","NM_001108119","GO:0005829","cytosol","inferred from electronic annotation","NM_001108119","GO:0030295","protein kinase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065753","Pfam","IPR019137","Nck-associated protein 1","Coding",13.44,13.27,13.84,7.5,7.25,7]
["TC0700000052.rn.1",15.78,10.63,35.506,"up",1.51033407783756e-7,2.78295892417157e-5,"Cd63","Cd63 molecule","chr7","+","NM_017125","coding",3332762,3335590,92,"7q11",29186,"NM_017125","RefSeq","Rattus norvegicus Cd63 molecule (Cd63), mRNA.","chr7",100,100,"NM_017125","P28648","NM_017125","Rn.11068","adipose tissue| adrenal gland| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| vibrissa| metamorphosing embryo| adult","NM_017125","GO:0002092","positive regulation of receptor internalization","not recorded","NM_017125","GO:0005737","cytoplasm","inferred from direct assay","NM_017125","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000010180","Pfam","IPR018499","Tetraspanin/Peripherin","Coding",16.01,15.59,15.74,10.74,10.77,10.38]
["TC1000001411.rn.1",5.72,8.8,-8.456,"down",1.51894328817031e-7,2.78295892417157e-5,"LOC102554015","uncharacterized LOC102554015","chr10","+","mRNARGD7611719_1","coding",80789131,80790026,30,null,"NA","mRNARGD7611719_1","Rat Genome Database","uncharacterized LOC102554015","chr10",100,100,{"$nulls":24},"Coding",5.5,5.95,5.72,8.9,8.71,8.78]
["TC0700000580.rn.1",12.85,5.43,171.255,"up",1.52474732141298e-7,2.78295892417157e-5,"Lum","lumican","chr7","+","NM_031050","coding",38819751,38826863,50,"7q13",81682,"NM_031050","RefSeq","Rattus norvegicus lumican (Lum), mRNA.","chr7",100,100,"NM_031050","P51886","NM_031050","Rn.3087","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| ovary| placenta| prostate| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_031050","GO:0007601","visual perception","inferred from electronic annotation","NM_031050","GO:0005578","proteinaceous extracellular matrix","inferred from direct assay","NM_031050","GO:0005518","collagen binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000006109","Pfam","IPR000372","Leucine-rich repeat-containing N-terminal","Coding",12.76,12.62,13.17,5.63,5.08,5.59]
["TC0100000763.rn.1",12.13,11.03,2.144,"up",1.57003036422091e-7,2.78295892417157e-5,"RGD1564617","similar to large subunit ribosomal protein L36a","chr1","+","ENSRNOT00000043603","coding",66963035,66963352,30,"1q21",308353,"ENSRNOT00000043603","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:67748455:67748772:1 gene:ENSRNOG00000032062 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000043603","D3ZDE0",{"$nulls":3},"ENSRNOT00000043603","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000043603","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000043603","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000043603","Pfam","IPR000552","Ribosomal protein L44e","Coding",12.21,12.08,12.1,11.01,11.08,11.01]
["TC0900000595.rn.1",12.13,11.03,2.144,"up",1.57003036422091e-7,2.78295892417157e-5,"LOC100911426","similar to large subunit ribosomal protein L36a","chr9","+","ENSRNOT00000072809","coding",52393778,52394096,30,"1q21",308353,"ENSRNOT00000072809","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:52059453:52059770:1 gene:ENSRNOG00000050463 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000072809","D3ZDE0",{"$nulls":3},"ENSRNOT00000072809","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000072809","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000072809","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000072809","Pfam","IPR000552","Ribosomal protein L44e","Coding",12.21,12.08,12.1,11.01,11.08,11.01]
["TC0600000775.rn.1",14.14,12.68,2.751,"up",1.61293712652138e-7,2.83013442674777e-5,"Rps10","ribosomal protein S10","chr6","+","ENSRNOT00000043250","coding",75429708,75430289,30,"20p12",81773,"ENSRNOT00000043250","ENSEMBL","ensembl:known chromosome:Rnor_5.0:6:84968907:84969452:1 gene:ENSRNOG00000031299 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000043250","P63326",{"$nulls":3},"ENSRNOT00000043250","GO:0000028","ribosomal small subunit assembly","inferred from mutant phenotype","ENSRNOT00000043250","GO:0005730","nucleolus","not recorded","ENSRNOT00000043250","GO:0003735","structural constituent of ribosome","inferred from mutant phenotype",{"$nulls":3},"ENSRNOT00000043250","Pfam","IPR005326","Plectin/S10, N-terminal","Coding",14.19,14,14.23,12.74,12.67,12.62]
["TC0700001870.rn.1",5.63,8.13,-5.657,"down",1.64718606209551e-7,2.86132690846611e-5,"Nr4a1","nuclear receptor subfamily 4, group A, member 1","chr7","+","NM_024388","coding",142899361,142920220,150,"7q36",79240,"NM_024388","RefSeq","Rattus norvegicus nuclear receptor subfamily 4, group A, member 1 (Nr4a1), mRNA.","chr7",100,100,"NM_024388","P22829","NM_024388","Rn.10000","brain| dorsal root ganglion| eye| heart| kidney| ovary| pancreas| pituitary gland| placenta| prostate| thymus| vibrissa| juvenile| adult","NM_024388","GO:0001938","positive regulation of endothelial cell proliferation","inferred from electronic annotation","NM_024388","GO:0005634","nucleus","inferred from direct assay","NM_024388","GO:0000978","RNA polymerase II core promoter proximal region sequence-specific DNA binding","not recorded","NM_024388","GenMAPP","Nuclear_Receptors","ENSRNOT00000010171","Pfam","IPR000536","Nuclear hormone receptor, ligand-binding, core","Coding",5.86,5.39,5.63,8.24,8.11,8.05]
["TC0100004935.rn.1",14.91,12.78,4.377,"up",1.71271458869877e-7,2.94569951686003e-5,"Apoe","apolipoprotein E","chr1","-","NM_001270681","coding",80612888,80616820,100,"1q21",25728,"NM_001270681","RefSeq","Rattus norvegicus apolipoprotein E (Apoe), transcript variant 1, mRNA.","chr1",100,100,"NM_001270681","P02650","NM_001270681","Rn.32351","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus| fetus| juvenile| adult",{"$nulls":4},"NM_001270681","GO:0005615","extracellular space","inferred from direct assay","NM_001270681","GO:0001540","beta-amyloid binding","inferred from direct assay","NM_001270681","GenMAPP","Statin_Pathway_PharmGKB","ENSRNOT00000041891","Pfam","IPR000074","Apolipoprotein A1/A4/E","Coding",14.95,14.9,14.87,12.85,12.95,12.53]
["TC0100007094.rn.1",3.58,5.31,-3.317,"down",1.73863075406265e-7,2.96095635576689e-5,"Npas4","neuronal PAS domain protein 4","chr1","-","NM_153626","coding",220260310,220278064,140,"1q43",266734,"NM_153626","RefSeq","Rattus norvegicus neuronal PAS domain protein 4 (Npas4), mRNA.","chr1",100,100,"NM_153626","Q8CJH6","NM_153626","Rn.86654","brain| adult","NM_153626","GO:0006351","transcription, DNA-templated","inferred from electronic annotation","NM_153626","GO:0005634","nucleus","inferred from electronic annotation","NM_153626","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000027119","Pfam","IPR013655","PAS fold-3","Coding",3.59,3.61,3.55,5.49,5.34,5.11]
["TC0200000855.rn.1",13.72,6.5,149.086,"up",1.76974708470334e-7,2.98468704935745e-5,"Cp","ceruloplasmin (ferroxidase)","chr2","+","NM_001270961","coding",104744133,104803664,290,"2q24",24268,"NM_001270961","RefSeq","Rattus norvegicus ceruloplasmin (ferroxidase) (Cp), transcript variant 2, mRNA.","chr2",100,100,"NM_001270961","P13635","NM_001270961","Rn.32777","brain| connective tissue| liver| lung| muscle| placenta| prostate| spleen| testis|tailbud embryo| juvenile| adult","NM_001270961","GO:0001889","liver development","inferred from expression pattern","NM_001270961","GO:0005615","extracellular space","inferred from direct assay","NM_001270961","GO:0004322","ferroxidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016083","Pfam","IPR011706","Multicopper oxidase, type 2","Coding",13.98,13.73,13.46,6.42,6.63,6.44]
["TC1500000620.rn.1",12.23,4.96,154.343,"up",1.81257998053978e-7,3.0275314271112e-5,"Arl11","ADP-ribosylation factor-like 11","chr15","+","NM_001013433","coding",41643541,41645685,30,"15p12",364396,"NM_001013433","RefSeq","Rattus norvegicus ADP-ribosylation factor-like 11 (Arl11), mRNA.","chr15",100,100,"NM_001013433","Q5BK71","NM_001013433","Rn.23090","connective tissue| lung| spleen| juvenile| adult","NM_001013433","GO:0002244","hematopoietic progenitor cell differentiation","not recorded","NM_001013433","GO:0005622","intracellular","inferred from electronic annotation","NM_001013433","GO:0005525","GTP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019646","Pfam","IPR001806","Small GTPase superfamily","Coding",12.34,11.8,12.56,5.07,5.54,4.27]
["TC0200001807.rn.1",6.72,4.86,3.63,"up",1.8664794792629e-7,3.08786809850246e-5,"Hmgcs2","3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial)","chr2","+","NM_173094","coding",200452625,200480786,140,"2q34",24450,"NM_173094","RefSeq","Rattus norvegicus 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) (Hmgcs2), mRNA.","chr2",100,100,"NM_173094","P22791","NM_173094","Rn.29594","adipose tissue| brain| colon| dorsal root ganglion| kidney| liver| lung| ovary| placenta| prostate| spleen| testis| fetus| juvenile| adult","NM_173094","GO:0001822","kidney development","inferred from expression pattern","NM_173094","GO:0005739","mitochondrion","not recorded","NM_173094","GO:0004421","hydroxymethylglutaryl-CoA synthase activity","inferred from direct assay","NM_173094","GenMAPP","Synthesis_and_Degradation_of_Ketone_Bodies_KEGG","ENSRNOT00000026121","Pfam","IPR013528","Hydroxymethylglutaryl-coenzyme A synthase, N-terminal","Coding",6.83,6.64,6.69,4.82,4.97,4.79]
["TC0200002692.rn.1",15.34,12.13,9.254,"up",1.9127228446261e-7,3.10522509663551e-5,"Hexb","hexosaminidase B","chr2","-","NM_001011946","coding",27983925,28003260,204,"2q12",294673,"NM_001011946","RefSeq","Rattus norvegicus hexosaminidase B (Hexb), mRNA.","chr2",100,100,"NM_001011946","Q6AXR4","NM_001011946","Rn.203067","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| thymus| metamorphosing embryo| juvenile| adult","NM_001011946","GO:0001501","skeletal system development","inferred from electronic annotation","NM_001011946","GO:0001669","acrosomal vesicle","inferred from electronic annotation","NM_001011946","GO:0004563","beta-N-acetylhexosaminidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000048554","Pfam","IPR015882","Beta-hexosaminidase, bacteial type, N-terminal","Coding",15.23,15.23,15.56,12.08,12.32,11.99]
["TSUnmapped00000144.rn.1",16.26,14.21,4.141,"up",1.95874064476073e-7,3.15048923519802e-5,"Rps4x","ribosomal protein S4, X-linked",null,null,"NM_001007600","coding","NA","NA",30,null,29426,"NM_001007600","RefSeq","Rattus norvegicus ribosomal protein S4, X-linked (Rps4x), mRNA.",null,100,100,"NM_001007600","P62703","NM_001007600","Rn.40171","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_001007600","GO:0006412","translation","inferred from electronic annotation","NM_001007600","GO:0005840","ribosome","inferred from sequence or structural similarity","NM_001007600","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":7},"Coding",16.38,16.21,16.19,14.16,14.44,14.03]
["TC0100002383.rn.1",10.35,12.63,-4.857,"down",2.0041060719834e-7,3.15647012403401e-5,"Mical2","microtubule associated monooxygenase, calponin and LIM domain containing 2","chr1","+","NM_001139508","coding",177048623,177173826,397,"1q33",365352,"NM_001139508","RefSeq","Rattus norvegicus microtubule associated monooxygenase, calponin and LIM domain containing 2 (Mical2), mRNA.","chr1",100,100,"NM_001139508","D4A1F2","NM_001139508","Rn.24515","brain| colon| connective tissue| dorsal root ganglion| heart| lung| ovary| placenta| prostate| spleen|tailbud embryo| fetus| juvenile| adult","NM_001139508","GO:0001947","heart looping","inferred from sequence or structural similarity","NM_001139508","GO:0005634","nucleus","not recorded","NM_001139508","GO:0003779","actin binding","not recorded",{"$nulls":3},"ENSRNOT00000021858","Pfam","IPR001715","Calponin homology domain","Coding",10.31,10.33,10.4,12.56,12.58,12.75]
["TC0500003869.rn.1",15.32,9.46,58.081,"up",2.02441145099663e-7,3.15647012403401e-5,"C1qa","complement component 1, q subcomponent, A chain","chr5","-","NM_001008515","coding",155261254,155264112,26,"5q36",298566,"NM_001008515","RefSeq","Rattus norvegicus complement component 1, q subcomponent, A chain (C1qa), mRNA.","chr5",100,100,"NM_001008515","P31720","NM_001008515","Rn.105647","adipose tissue| connective tissue| heart| liver| ovary| pancreas| placenta| prostate| juvenile| adult","NM_001008515","GO:0006958","complement activation, classical pathway","inferred from electronic annotation","NM_001008515","GO:0005576","extracellular region","inferred from electronic annotation","NM_001008515","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000017385","Pfam","IPR001073","Complement C1q protein","Coding",15.58,14.82,15.56,10.08,9.26,9.04]
["TC1000003366.rn.1",13.11,6.21,119.428,"up",2.03170920637668e-7,3.15647012403401e-5,"Evi2b","ecotropic viral integration site 2B","chr10","-","NM_001271482","coding",66856980,66858598,30,null,100910940,"NM_001271482","RefSeq","Rattus norvegicus ecotropic viral integration site 2B (Evi2b), mRNA.","chr10",100,100,"NM_001271482","D3ZM19","NM_001271482","Rn.203186","connective tissue| kidney| lung| adult",{"$nulls":4},"NM_001271482","GO:0005737","cytoplasm","inferred from electronic annotation",{"$nulls":11},"Coding",12.88,12.78,13.67,6.31,6.39,5.94]
["TC0700000840.rn.1",16.03,11.65,20.821,"up",2.10923932885128e-7,3.23054310899359e-5,"Gns","glucosamine (N-acetyl)-6-sulfatase","chr7","+","NM_001011989","coding",65616132,65653039,180,"7q22",299825,"NM_001011989","RefSeq","Rattus norvegicus glucosamine (N-acetyl)-6-sulfatase (Gns), mRNA.","chr7",100,100,"NM_001011989","F7F393","NM_001011989","Rn.228654","adipose tissue| brain| colon| connective tissue| embryonic tissue| eye| kidney| liver| lung| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| vibrissa| metamorphosing embryo| juvenile| adult","NM_001011989","GO:0042340","keratan sulfate catabolic process","inferred from direct assay","NM_001011989","GO:0005764","lysosome","inferred from direct assay","NM_001011989","GO:0005539","glycosaminoglycan binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000006566","Pfam","IPR000917","Sulfatase","Coding",16.18,15.73,16.18,11.75,11.8,11.41]
["TC1500001905.rn.1",8.79,11.75,-7.781,"down",2.12009622028248e-7,3.23054310899359e-5,"Fdft1","farnesyl diphosphate farnesyl transferase 1","chr15","-","NM_019238","coding",46337838,46368282,150,"15p12",29580,"NM_019238","RefSeq","Rattus norvegicus farnesyl diphosphate farnesyl transferase 1 (Fdft1), mRNA.","chr15",100,100,"NM_019238","Q02769","NM_019238","Rn.154404","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| placenta| prostate| small intestine| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_019238","GO:0006695","cholesterol biosynthetic process","inferred from mutant phenotype","NM_019238","GO:0005783","endoplasmic reticulum","not recorded","NM_019238","GO:0004310","farnesyl-diphosphate farnesyltransferase activity","inferred from direct assay","NM_019238","GenMAPP","Cholesterol_Biosynthesis","ENSRNOT00000032089","Pfam","IPR002060","Squalene/phytoene synthase","Coding",8.8,8.69,8.87,11.96,11.81,11.48]
["TC0700003389.rn.1",8.32,5.84,5.579,"up",2.1940686760336e-7,3.31418843229388e-5,"Oplah","5-oxoprolinase (ATP-hydrolysing)","chr7","-","NM_053904","coding",117344407,117394255,549,"7q34",116684,"NM_053904","RefSeq","Rattus norvegicus 5-oxoprolinase (ATP-hydrolysing) (Oplah), mRNA.","chr7",100,100,"NM_053904","P97608","NM_053904","Rn.3066","adipose tissue| brain| dorsal root ganglion| heart| kidney| liver| lung| pituitary gland| prostate| spleen| testis| juvenile| adult","NM_053904","GO:0008152","metabolic process","inferred from electronic annotation",{"$nulls":4},"NM_053904","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016424","Pfam","IPR002821","Hydantoinase/oxoprolinase","Coding",8.25,8.25,8.47,5.88,5.74,5.91]
["TC1900000522.rn.1",12.33,10.12,4.627,"up",2.26033534386792e-7,3.3414238081443e-5,"LOC100360573","ribosomal protein S12-like","chr19","+","ENSRNOT00000027225","coding",38619683,38620335,30,null,100360573,"ENSRNOT00000027225","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:19:49487602:49488236:1 gene:ENSRNOG00000020093 gene_biotype:protein_coding transcript_biotype:protein_coding","chr19",100,100,"ENSRNOT00000027225","D3ZHB3",{"$nulls":3},"ENSRNOT00000027225","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000027225","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000027225","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000027225","Pfam","IPR004038","Ribosomal protein L7Ae/L30e/S12e/Gadd45","Coding",12.32,12.18,12.5,10.16,10.22,9.99]
["TC0800001028.rn.1",13.97,6.43,186.108,"up",2.30475308455163e-7,3.3414238081443e-5,"Anxa2","annexin A2","chr8","+","NM_019905","coding",75687105,75723598,175,"8q24",56611,"NM_019905","RefSeq","Rattus norvegicus annexin A2 (Anxa2), mRNA.","chr8",100,100,"NM_019905","Q07936","NM_019905","Rn.90546","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_019905","GO:0001525","angiogenesis","inferred from electronic annotation","NM_019905","GO:0001726","ruffle","inferred from direct assay","NM_019905","GO:0004859","phospholipase inhibitor activity","inferred from electronic annotation","NM_019905","GenMAPP","Prostaglandin_synthesis_regulation","ENSRNOT00000038677","Pfam","IPR018502","Annexin repeat","Coding",14.15,13.64,14.11,6.68,6.39,6.22]
["TC1200000442.rn.1",8.25,5.23,8.112,"up",2.30827734141567e-7,3.3414238081443e-5,"Lat2","linker for activation of T cells family, member 2","chr12","+","NM_173840","coding",25114113,25129317,147,"12q12",317676,"NM_173840","RefSeq","Rattus norvegicus linker for activation of T cells family, member 2 (Lat2), mRNA.","chr12",100,100,"NM_173840","Q8CGL2","NM_173840","Rn.163206","eye| kidney| liver| pancreas| spleen| juvenile","NM_173840","GO:0019722","calcium-mediated signaling","inferred from electronic annotation","NM_173840","GO:0005886","plasma membrane","inferred from electronic annotation","NM_173840","GO:0042169","SH2 domain binding","inferred from electronic annotation",{"$nulls":7},"Coding",8.1,8.03,8.61,5.14,5.16,5.38]
["TC0700003915.rn.1",10.01,6.39,12.295,"up",2.4059335570672e-7,3.38395008141016e-5,"Bin2","bridging integrator 2","chr7","-","NM_001012223","coding",142273796,142300693,191,"7q36",366988,"NM_001012223","RefSeq","Rattus norvegicus bridging integrator 2 (Bin2), mRNA.","chr7",100,100,"NM_001012223","Q68FR2","NM_001012223","Rn.47919","brain| connective tissue| embryonic tissue| kidney| liver| pancreas| placenta| spleen| testis| thymus| juvenile| adult","NM_001012223","GO:0006911","phagocytosis, engulfment","inferred from electronic annotation","NM_001012223","GO:0001891","phagocytic cup","not recorded","NM_001012223","GO:0005543","phospholipid binding","not recorded",{"$nulls":3},"ENSRNOT00000048262","Pfam","IPR004148","BAR domain","Coding",9.93,9.93,10.17,6.54,6.54,6.09]
["TC0400004083.rn.1",13.82,10.67,8.877,"up",2.40802429546994e-7,3.38395008141016e-5,"Bhlhe41","basic helix-loop-helix family, member e41","chr4","-","ENSRNOT00000070957","coding",180230706,180235143,80,"4q43",117095,"ENSRNOT00000070957","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:244395779:244398201:-1 gene:ENSRNOG00000048961 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000070957","M0R3T6","ENSRNOT00000070957","Rn.10784","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| lung| muscle| nerve| pancreas| pituitary gland| placenta| prostate| juvenile| adult","ENSRNOT00000070957","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","ENSRNOT00000070957","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000070957","GO:0000978","RNA polymerase II core promoter proximal region sequence-specific DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000070957","Pfam","IPR003650","Orange","Coding",13.71,13.78,13.96,10.88,10.87,10.26]
["TC0300003442.rn.1",11.65,5.78,58.485,"up",2.41367495142983e-7,3.38395008141016e-5,"Serping1","serpin peptidase inhibitor, clade G (C1 inhibitor), member 1","chr3","-","NM_199093","coding",72161230,72171059,108,"3q24",295703,"NM_199093","RefSeq","Rattus norvegicus serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 (Serping1), mRNA.","chr3",100,100,"NM_199093","Q6P734","NM_199093","Rn.100285","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus| juvenile| adult","NM_199093","GO:0001869","negative regulation of complement activation, lectin pathway","not recorded","NM_199093","GO:0005615","extracellular space","not recorded","NM_199093","GO:0001848","complement binding","not recorded",{"$nulls":3},"ENSRNOT00000009817","Pfam","IPR023796","Serpin domain","Coding",11.67,11.51,11.78,5.83,6.03,5.49]
["TC0200004244.rn.1",10.63,5.57,33.359,"up",2.41557659371861e-7,3.38395008141016e-5,"Fcgr1a","Fc fragment of IgG, high affinity Ia, receptor (CD64)","chr2","-","NM_001100836","coding",198430536,198439457,50,"2q34",295279,"NM_001100836","RefSeq","Rattus norvegicus Fc fragment of IgG, high affinity Ia, receptor (CD64) (Fcgr1a), mRNA.","chr2",100,100,"NM_001100836","Q8K4V5","NM_001100836","Rn.16643","lung| pituitary gland| spleen| juvenile| adult","NM_001100836","GO:0001788","antibody-dependent cellular cytotoxicity","not recorded","NM_001100836","GO:0005886","plasma membrane","not recorded","NM_001100836","GO:0019770","IgG receptor activity","not recorded",{"$nulls":3},"ENSRNOT00000028780","Pfam","IPR013151","Immunoglobulin","Coding",10.85,10.36,10.69,5.48,5.36,5.86]
["TC0100003399.rn.1",11.02,5.58,43.411,"up",2.49910454855238e-7,3.46549236762337e-5,"Dock8","dedicator of cytokinesis 8","chr1","+","NM_001037793","coding",242934929,243153472,550,"1q51",499337,"NM_001037793","RefSeq","Rattus norvegicus dedicator of cytokinesis 8 (Dock8), mRNA.","chr1",100,100,"NM_001037793","F1LPG2","NM_001037793","Rn.164225","adipose tissue| brain| colon| connective tissue| kidney| liver| lung| ovary| pancreas| placenta| prostate| small intestine| spleen| thymus| juvenile| adult","NM_001037793","GO:0001771","immunological synapse formation","not recorded","NM_001037793","GO:0031252","cell leading edge","not recorded","NM_001037793","GO:0005085","guanyl-nucleotide exchange factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000015668","Pfam","IPR010703","Dedicator of cytokinesis C-terminal","Coding",10.81,10.81,11.45,5.61,5.66,5.46]
["TC0300002672.rn.1",12.13,8.56,11.876,"up",2.51505475219417e-7,3.46549236762337e-5,"Dpp7","dipeptidylpeptidase 7","chr3","-","NM_031973","coding",2566909,2573398,284,"3p13",83799,"NM_031973","RefSeq","Rattus norvegicus dipeptidylpeptidase 7 (Dpp7), mRNA.","chr3",100,100,"NM_031973","Q9EPB1","NM_031973","Rn.3363","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| testis| fetus| juvenile| adult","NM_031973","GO:0006508","proteolysis","inferred from direct assay","NM_031973","GO:0005576","extracellular region","inferred from electronic annotation","NM_031973","GO:0004177","aminopeptidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017271","Pfam","IPR000073","Alpha/beta hydrolase fold-1","Coding",12.21,11.89,12.3,8.61,8.63,8.44]
["TC0100001975.rn.1",14.36,6.69,203.657,"up",2.53363381894058e-7,3.46549236762337e-5,"Ctsc","cathepsin C","chr1","+","NM_017097","coding",151918530,151950533,133,"1q32",25423,"NM_017097","RefSeq","Rattus norvegicus cathepsin C (Ctsc), mRNA.","chr1",100,100,"NM_017097","P80067","NM_017097","Rn.203177","colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_017097","GO:0001913","T cell mediated cytotoxicity","inferred from electronic annotation","NM_017097","GO:0005615","extracellular space","not recorded","NM_017097","GO:0004197","cysteine-type endopeptidase activity","non-traceable author statement",{"$nulls":3},"ENSRNOT00000022342","Pfam","IPR000668","Peptidase C1A, papain C-terminal","Coding",14.66,14.13,14.29,6.75,6.95,6.37]
["TC0100002676.rn.1",13.16,6.28,117.784,"up",2.55762807526508e-7,3.47098103870545e-5,"Itgam","integrin, alpha M","chr1","+","NM_012711","coding",199495332,199545740,334,"1q36",25021,"NM_012711","RefSeq","Rattus norvegicus integrin, alpha M (Itgam), mRNA.","chr1",100,100,"NM_012711","G3V8L7","NM_012711","Rn.54465","connective tissue| spleen| adult","NM_012711","GO:0002523","leukocyte migration involved in inflammatory response","not recorded","NM_012711","GO:0005634","nucleus","inferred from electronic annotation","NM_012711","GO:0001846","opsonin binding","inferred from electronic annotation","NM_012711","GenMAPP","Integrin-mediated_cell_adhesion_KEGG","ENSRNOT00000026748","Pfam","IPR002035","von Willebrand factor, type A","Coding",13.05,12.5,13.93,5.99,6.41,6.45]
["TC1600000286.rn.1",12.81,6.8,64.445,"up",2.58852920402638e-7,3.47952800037882e-5,"Ifi30","interferon gamma inducible protein 30","chr16","+","NM_001030026","coding",20426389,20430782,120,"16p14",290644,"NM_001030026","RefSeq","Rattus norvegicus interferon gamma inducible protein 30 (Ifi30), mRNA.","chr16",100,100,"NM_001030026","Q499T2","NM_001030026","Rn.3370","adipose tissue| adrenal gland| colon| connective tissue| dorsal root ganglion| eye| heart| liver| lung| ovary| placenta| prostate| small intestine| spleen| vibrissa|tailbud embryo| fetus| juvenile| adult","NM_001030026","GO:0019886","antigen processing and presentation of exogenous peptide antigen via MHC class II","inferred from electronic annotation","NM_001030026","GO:0005576","extracellular region","inferred from electronic annotation","NM_001030026","GO:0016667","oxidoreductase activity, acting on a sulfur group of donors","not recorded",{"$nulls":3},"ENSRNOT00000026225","Pfam","IPR004911","Gamma interferon inducible lysosomal thiol reductase GILT","Coding",12.84,12.51,13.07,7.07,6.77,6.57]
["TC0800000714.rn.1",5.5,9.03,-11.551,"down",2.64419178628937e-7,3.5062790473002e-5,"Exph5","exophilin 5","chr8","+","ENSRNOT00000039336","coding",57885970,57962574,110,"8q24",315663,"ENSRNOT00000039336","ENSEMBL","ensembl:known chromosome:Rnor_5.0:8:56463112:56541322:1 gene:ENSRNOG00000025115 gene_biotype:protein_coding transcript_biotype:protein_coding","chr8",100,100,"ENSRNOT00000039336","F1LXT0","ENSRNOT00000039336","Rn.214060","prostate| adult","ENSRNOT00000039336","GO:0003334","keratinocyte development","inferred from electronic annotation","ENSRNOT00000039336","GO:0005768","endosome","not recorded","ENSRNOT00000039336","GO:0017137","Rab GTPase binding","not recorded",{"$nulls":7},"Coding",5.7,5.38,5.42,8.84,9.12,9.12]
["TC1400001960.rn.1",13.42,10.24,9.063,"up",2.70908334109905e-7,3.56511263016906e-5,"Lap3","leucine aminopeptidase 3","chr14","-","NM_001011910","coding",70102810,70121815,170,"14q21",289668,"NM_001011910","RefSeq","Rattus norvegicus leucine aminopeptidase 3 (Lap3), mRNA.","chr14",100,100,"NM_001011910","Q68FS4","NM_001011910","Rn.99790","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| placenta| prostate| testis|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001011910","GO:0006508","proteolysis","inferred from electronic annotation","NM_001011910","GO:0005634","nucleus","inferred from electronic annotation","NM_001011910","GO:0004177","aminopeptidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000004770","Pfam","IPR000819","Peptidase M17, leucyl aminopeptidase, C-terminal","Coding",13.33,13.29,13.64,9.99,10.6,10.12]
["TC0700003082.rn.1",16.08,14.61,2.77,"up",2.74148116486595e-7,3.58062175299898e-5,"LOC100909743","60S ribosomal protein L5-like","chr7","-","mRNARGD6502005_1","coding",83989525,83989713,30,null,"NA","mRNARGD6502005_1","Rat Genome Database","60S ribosomal protein L5-like","chr7",100,100,{"$nulls":24},"Coding",16.2,15.99,16.05,14.77,14.54,14.53]
["TC1500000885.rn.1",11.08,6.16,30.274,"up",2.95251713901236e-7,3.76038600663376e-5,"Epsti1","epithelial stromal interaction 1 (breast)","chr15","+","NM_001044257","coding",60084966,60190365,139,"15q11",498547,"NM_001044257","RefSeq","Rattus norvegicus epithelial stromal interaction 1 (breast) (Epsti1), mRNA.","chr15",100,100,"NM_001044257","Q5BK43","NM_001044257","Rn.202726","brain| pancreas| small intestine| thymus| juvenile| adult",{"$nulls":19},"Coding",10.82,10.82,11.61,6.24,6.2,6.04]
["TC0700000008.rn.1",13.66,7.71,61.82,"up",2.96517865262106e-7,3.76038600663376e-5,"Pros1","protein S (alpha)","chr7","+","NM_031086","coding",1206648,1288142,141,null,81750,"NM_031086","RefSeq","Rattus norvegicus protein S (alpha) (Pros1), mRNA.","chr7",100,100,"NM_031086","M0R5R0","NM_031086","Rn.2888","adipose tissue| connective tissue| dorsal root ganglion| embryonic tissue| eye| kidney| liver| lung| ovary| pineal gland| pituitary gland| placenta| small intestine| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_031086","GO:0007596","blood coagulation","inferred from electronic annotation","NM_031086","GO:0005576","extracellular region","inferred from electronic annotation","NM_031086","GO:0005509","calcium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073689","Pfam","IPR000294","Gamma-carboxyglutamic acid-rich (GLA) domain","Coding",13.54,13.55,13.89,7.67,7.89,7.57]
["TC1900001629.rn.1",14.41,7.01,168.897,"up",2.96564781560288e-7,3.76038600663376e-5,"Cyba","cytochrome b-245, alpha polypeptide","chr19","-","NM_024160","coding",55249632,55257844,60,"19q12",79129,"NM_024160","RefSeq","Rattus norvegicus cytochrome b-245, alpha polypeptide (Cyba), mRNA.","chr19",100,100,"NM_024160","Q62737","NM_024160","Rn.5856","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| heart| kidney| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| vibrissa| juvenile| adult","NM_024160","GO:0001938","positive regulation of endothelial cell proliferation","inferred from mutant phenotype","NM_024160","GO:0005737","cytoplasm","not recorded","NM_024160","GO:0005515","protein binding","inferred from physical interaction","NM_024160","GenMAPP","Oxidative_Stress","ENSRNOT00000017564","Pfam","IPR007732","Cytochrome b558 alpha-subunit","Coding",14.79,13.89,14.54,7.33,7.23,6.46]
["TC1000004134.rn.1",13.07,11.3,3.411,"up",2.98314871893685e-7,3.76038600663376e-5,"Rps18","ribosomal protein S18","chr10","-","ENSRNOT00000046010","coding",104521678,104522243,30,"20p12",294282,"ENSRNOT00000046010","ENSEMBL","ensembl:known chromosome:Rnor_5.0:10:103763117:103763657:1 gene:ENSRNOG00000033152 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000046010","P62271","ENSRNOT00000046010","Rn.42766","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| prostate| spleen| vibrissa| juvenile| adult","ENSRNOT00000046010","GO:0006412","translation","not recorded","ENSRNOT00000046010","GO:0015935","small ribosomal subunit","traceable author statement","ENSRNOT00000046010","GO:0003735","structural constituent of ribosome","not recorded",{"$nulls":3},"ENSRNOT00000046010","Pfam","IPR001892","Ribosomal protein S13","Coding",13.09,13.08,13.03,11.51,11.32,11.08]
["TC0100006195.rn.1",6.75,10.23,-11.158,"down",2.99900383143225e-7,3.76038600663376e-5,"Olr59","olfactory receptor 59","chr1","-","NM_173293","coding",167906037,167911961,40,"1q32",170816,"NM_173293","RefSeq","Rattus norvegicus olfactory receptor 59 (Olr59), mRNA.","chr1",100,100,"NM_173293","O88628","NM_173293","Rn.12541","embryonic tissue","NM_173293","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_173293","GO:0005886","plasma membrane","inferred from electronic annotation","NM_173293","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025097","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",6.95,6.54,6.75,9.82,10.31,10.57]
["TC1700001028.rn.1",16.26,14.84,2.676,"up",3.00900152508257e-7,3.76038600663376e-5,"Rpl34-ps1","ribosomal protein L34, pseudogene 1","chr17","+","LOC680170.aSep08-unspliced","coding",78876109,78876561,15,null,"NA","LOC680170.aSep08-unspliced","Ace View","ribosomal protein L34, pseudogene 1","chr17",100,100,"ENSRNOT00000057895","D4A4W9",{"$nulls":3},"ENSRNOT00000057895","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000057895","GO:0022625","cytosolic large ribosomal subunit","inferred from electronic annotation","ENSRNOT00000057895","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000057895","Pfam","IPR008195","Ribosomal protein L34Ae","Coding",16.33,16.23,16.23,14.89,14.91,14.72]
["TC0500003495.rn.1",14.69,12.34,5.098,"up",3.1165685982291e-7,3.84968019086641e-5,"Ybx1","Y box binding protein 1","chr5","-","NM_031563","coding",138315878,138336481,127,"5q36",500538,"NM_031563","RefSeq","Rattus norvegicus Y box binding protein 1 (Ybx1), mRNA.","chr5",100,100,"NM_031563","P62961","NM_031563","Rn.110976","adrenal gland| brain| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_031563","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from direct assay","NM_031563","GO:0005576","extracellular region","inferred from electronic annotation","NM_031563","GO:0002039","p53 binding","inferred from mutant phenotype",{"$nulls":3},"ENSRNOT00000015875","Pfam","IPR002059","Cold-shock protein, DNA-binding","Coding",14.79,14.64,14.64,12.49,12.33,12.21]
["TC0100001245.rn.1",11.69,4.99,103.968,"up",3.12477639118165e-7,3.84968019086641e-5,"Tyrobp","Tyro protein tyrosine kinase binding protein","chr1","+","NM_212525","coding",88875404,88879305,69,"1q21",361537,"NM_212525","RefSeq","Rattus norvegicus Tyro protein tyrosine kinase binding protein (Tyrobp), mRNA.","chr1",100,100,"NM_212525","Q6X9T7","NM_212525","Rn.11534","liver| lung| pituitary gland| placenta| prostate| spleen| adult","NM_212525","GO:0002281","macrophage activation involved in immune response","inferred from electronic annotation","NM_212525","GO:0009986","cell surface","not recorded","NM_212525","GO:0005057","receptor signaling protein activity","traceable author statement",{"$nulls":3},"ENSRNOT00000028284","Pfam","IPR009861","DAP10 membrane","Coding",11.54,11.03,12.49,4.83,5.32,4.82]
["TC0900002591.rn.1",14.64,12.81,3.555,"up",3.1559461266975e-7,3.86070001175086e-5,"Rab31","RAB31, member RAS oncogene family","chr9","-","NM_145094","coding",113370066,113505518,110,"9q37",246324,"NM_145094","RefSeq","Rattus norvegicus RAB31, member RAS oncogene family (Rab31), mRNA.","chr9",100,100,"NM_145094","Q6GQP4","NM_145094","Rn.28921","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| ovary| pancreas| placenta| prostate| spleen| testis| metamorphosing embryo| juvenile| adult","NM_145094","GO:0007264","small GTPase mediated signal transduction","inferred from electronic annotation","NM_145094","GO:0005769","early endosome","inferred from direct assay","NM_145094","GO:0005525","GTP binding","not recorded",{"$nulls":3},"ENSRNOT00000067974","Pfam","IPR000795","Elongation factor, GTP-binding domain","Coding",14.71,14.57,14.63,12.71,12.91,12.81]
["TC0100003188.rn.1",11.18,13.63,-5.464,"down",3.17835696892008e-7,3.86092579770005e-5,"Fads1","fatty acid desaturase 1","chr1","+","NM_053445","coding",226234051,226249121,150,"1q43",84575,"NM_053445","RefSeq","Rattus norvegicus fatty acid desaturase 1 (Fads1), mRNA.","chr1",100,100,"NM_053445","Q920R3","NM_053445","Rn.28161","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| nerve| ovary| prostate| spleen| testis| metamorphosing embryo| juvenile| adult","NM_053445","GO:0006636","unsaturated fatty acid biosynthetic process","inferred from direct assay","NM_053445","GO:0005634","nucleus","inferred from direct assay","NM_053445","GO:0005506","iron ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000027834","Pfam","IPR001199","Cytochrome b5-like heme/steroid binding domain","Coding",11.13,10.95,11.46,13.72,13.77,13.4]
["TC1000002638.rn.1",5.42,7.7,-4.857,"down",3.42223682148515e-7,4.10216583892107e-5,"Lsm11","LSM11, U7 small nuclear RNA associated","chr10","-","NM_001173384","coding",31023561,31041662,110,"10q21",501688,"NM_001173384","RefSeq","Rattus norvegicus LSM11, U7 small nuclear RNA associated (Lsm11), mRNA.","chr10",100,100,"NM_001173384","B0BNI4","NM_001173384","Rn.129495","ovary| placenta| thymus| adult","NM_001173384","GO:0006398","histone mRNA 3'-end processing","inferred from electronic annotation","NM_001173384","GO:0005634","nucleus","not recorded","NM_001173384","GO:0071209","U7 snRNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007267","Pfam","IPR001163","Ribonucleoprotein LSM domain","Coding",5.45,5.17,5.65,7.7,7.84,7.55]
["TC0700000814.rn.1",14.64,10.63,16.111,"up",3.42417849659522e-7,4.10216583892107e-5,"Gns","glucosamine (N-acetyl)-6-sulfatase (Gns), mRNA","chr7","+","NM_001011989_2","coding",63466860,63501148,220,null,"NA","NM_001011989_2","RefSeq","glucosamine (N-acetyl)-6-sulfatase (Gns), mRNA","chr7",100,100,"ENSRNOT00000064349","Q32KJ5","ENSRNOT00000064349","Rn.228654","adipose tissue| brain| colon| connective tissue| embryonic tissue| eye| kidney| liver| lung| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| vibrissa| metamorphosing embryo| juvenile| adult","ENSRNOT00000064349","GO:0042340","keratan sulfate catabolic process","inferred from direct assay","ENSRNOT00000064349","GO:0005764","lysosome","inferred from direct assay","ENSRNOT00000064349","GO:0005539","glycosaminoglycan binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000064349","Pfam","IPR000917","Sulfatase","Coding",14.74,14.38,14.8,10.79,10.74,10.36]
["TC0700003460.rn.1",10.48,4.14,81.008,"up",3.50070520926977e-7,4.16511987604282e-5,"Rac2","ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)","chr7","-","NM_001008384","coding",119783872,119797105,119,"7q34",366957,"NM_001008384","RefSeq","Rattus norvegicus ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) (Rac2), mRNA.","chr7",100,100,"NM_001008384","Q5U1Y2","NM_001008384","Rn.2863","brain| connective tissue| heart| liver| lung| ovary| pancreas| prostate| spleen| thymus|tailbud embryo| fetus| juvenile| adult","NM_001008384","GO:0006184","GTP catabolic process","inferred from electronic annotation","NM_001008384","GO:0005635","nuclear envelope","inferred from electronic annotation","NM_001008384","GO:0003924","GTPase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009994","Pfam","IPR001806","Small GTPase superfamily","Coding",10.39,9.92,11.12,4.15,4.11,4.16]
["TC0400002890.rn.1",11.65,6.57,33.825,"up",3.57964705930468e-7,4.22915215909088e-5,"Skap2","src kinase associated phosphoprotein 2","chr4","-","NM_130413","coding",81801150,81970273,212,"4q24",155183,"NM_130413","RefSeq","Rattus norvegicus src kinase associated phosphoprotein 2 (Skap2), mRNA.","chr4",100,100,"NM_130413","Q920G0","NM_130413","Rn.162747","adipose tissue| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| metamorphosing embryo| juvenile| adult","NM_130413","GO:0008285","negative regulation of cell proliferation","inferred from electronic annotation","NM_130413","GO:0005634","nucleus","not recorded","ENSRNOT00000016608","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016608","Pfam","IPR001452","SH3 domain","Coding",11.55,11.38,12.01,6.48,6.62,6.6]
["TC0400003701.rn.1",11.48,5.37,69.071,"up",3.60321524118042e-7,4.22915215909088e-5,"C3ar1","complement component 3a receptor 1","chr4","-","NM_032060","coding",155683768,155690874,30,"4q42",84007,"NM_032060","RefSeq","Rattus norvegicus complement component 3a receptor 1 (C3ar1), mRNA.","chr4",100,100,"NM_032060","O55197","NM_032060","Rn.9772","kidney| juvenile","NM_032060","GO:0002430","complement receptor mediated signaling pathway","inferred from mutant phenotype","NM_032060","GO:0005886","plasma membrane","inferred from direct assay","NM_032060","GO:0001850","complement component C3a binding","inferred from direct assay","NM_032060","GenMAPP","GPCRDB_Class_A_Rhodopsin-like","ENSRNOT00000012216","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",11.34,11.25,11.84,5.34,5.5,5.27]
["TC1300000770.rn.1",13.21,9.32,14.825,"up",3.64425155587823e-7,4.24861032061481e-5,"Cd48","Cd48 molecule","chr13","+","NM_139103","coding",90116288,90141596,167,"13q24",245962,"NM_139103","RefSeq","Rattus norvegicus Cd48 molecule (Cd48), mRNA.","chr13",100,100,"NM_139103","P10252","NM_139103","Rn.3705","connective tissue| dorsal root ganglion| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_139103","GO:0007165","signal transduction","inferred from electronic annotation","NM_139103","GO:0005886","plasma membrane","inferred from direct assay","NM_139103","GO:0003823","antigen binding","inferred from mutant phenotype",{"$nulls":3},"ENSRNOT00000006306","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",13.18,13.07,13.39,9.71,9.18,9.07]
["TC0100002921.rn.1",8.42,5.3,8.694,"up",3.74180291939379e-7,4.30495536422436e-5,"Lsp1","lymphocyte-specific protein 1","chr1","+","NM_001025420","coding",215628767,215662507,230,"1q41",361680,"NM_001025420","RefSeq","Rattus norvegicus lymphocyte-specific protein 1 (Lsp1), mRNA.","chr1",100,100,"NM_001025420","Q4QQV6","NM_001025420","Rn.101608","colon| connective tissue| embryonic tissue| heart| lung| pancreas| pituitary gland| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001025420","GO:0006935","chemotaxis","inferred from electronic annotation","NM_001025420","GO:0070062","extracellular vesicular exosome","not recorded","NM_001025420","GO:0004871","signal transducer activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000054864","Pfam","IPR006018","Caldesmon/lymphocyte specific protein","Coding",8.53,8.17,8.55,5.34,5.31,5.26]
["TC0700002135.rn.1",17.63,16.57,2.085,"up",3.92018622098355e-7,4.48010229241482e-5,"RGD1560017","similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI)","chr7","-","ENSRNOT00000049695","coding",11760494,11761667,30,"7q11",690772,"ENSRNOT00000049695","ENSEMBL","ensembl:known chromosome:Rnor_5.0:7:11928209:11928607:-1 gene:ENSRNOG00000029262 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000049695","D3Z9G9","ENSRNOT00000049695","Rn.225394","placenta","ENSRNOT00000049695","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000049695","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000049695","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000049695","Pfam","IPR001063","Ribosomal protein L22/L17","Coding",17.6,17.66,17.64,16.59,16.55,16.56]
["TC1000002529.rn.1",10.86,5.35,45.57,"up",4.03442749591308e-7,4.57861216060326e-5,"Dock2","dedicator of cytokinesis 2","chr10","-","ENSRNOT00000059810","coding",19453456,19603128,242,"10q12",360509,"ENSRNOT00000059810","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:10:19330459:19481125:-1 gene:ENSRNOG00000006932 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000059810","F7F7H4","ENSRNOT00000059810","Rn.178834","colon| prostate| fetus| adult","ENSRNOT00000059810","GO:0001766","membrane raft polarization","not recorded","ENSRNOT00000059810","GO:0016020","membrane","not recorded","ENSRNOT00000059810","GO:0005085","guanyl-nucleotide exchange factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000059810","Pfam","IPR001452","SH3 domain","Coding",10.7,10.64,11.25,5.36,5.43,5.27]
["TC0900000530.rn.1",11.49,10.3,2.282,"up",4.05910006754304e-7,4.57861216060326e-5,"Map4k4","mitogen-activated protein kinase kinase kinase kinase 4","chr9","+","NM_001106904","coding",46656275,46784300,524,"9q21",301363,"NM_001106904","RefSeq","Rattus norvegicus mitogen-activated protein kinase kinase kinase kinase 4 (Map4k4), mRNA.","chr9",100,100,"NM_001106904","F1M754","NM_001106904","Rn.101820","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001106904","GO:0006468","protein phosphorylation","inferred from electronic annotation","NM_001106904","GO:0005622","intracellular","not recorded","NM_001106904","GO:0004674","protein serine/threonine kinase activity","not recorded",{"$nulls":3},"ENSRNOT00000019180","Pfam","IPR000719","Protein kinase domain","Coding",11.46,11.54,11.48,10.33,10.38,10.18]
["TC0100004161.rn.1",11.65,9.29,5.134,"up",4.3356608679344e-7,4.82786954723644e-5,"Epb41l2","erythrocyte membrane protein band 4.1-like 2","chr1","-","ENSRNOT00000017322","coding",20870846,21067713,478,"1p12",309557,"ENSRNOT00000017322","ENSEMBL","ensembl:known chromosome:Rnor_5.0:1:22362882:22443605:-1 gene:ENSRNOG00000012346 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000017322","D3ZDT1","ENSRNOT00000017322","Rn.1362","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| heart| liver| lung| ovary| pineal gland| prostate| spleen| metamorphosing embryo| juvenile| adult","ENSRNOT00000017322","GO:0030866","cortical actin cytoskeleton organization","inferred from electronic annotation","ENSRNOT00000017322","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000017322","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017322","Pfam","IPR008379","Band 4.1, C-terminal","Coding",11.51,11.51,11.93,9.39,9.31,9.17]
["TC0400004088.rn.1",9.62,7.23,5.242,"up",4.40961548829615e-7,4.86410495014972e-5,"Itpr2","inositol 1,4,5-trisphosphate receptor, type 2","chr4","-","NM_031046","coding",180421933,180800088,709,"4q44",81678,"NM_031046","RefSeq","Rattus norvegicus inositol 1,4,5-trisphosphate receptor, type 2 (Itpr2), mRNA.","chr4",100,100,"NM_031046","P29995","NM_031046","Rn.89152","adipose tissue| brain| kidney| prostate| testis| thymus| metamorphosing embryo| juvenile| adult","NM_031046","GO:0001666","response to hypoxia","not recorded","NM_031046","GO:0005737","cytoplasm","inferred from direct assay","NM_031046","GO:0005220","inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity","inferred from direct assay","NM_031046","GenMAPP","Calcium_regulation_in_cardiac_cells","ENSRNOT00000040645","Pfam","IPR000699","RIH (RyR and IP3R Homology) domain","Coding",9.64,9.48,9.73,7.21,7.44,7.03]
["TC2000000662.rn.1",10.32,6.48,14.32,"up",4.47007283638032e-7,4.86410495014972e-5,"MGC112715","hypothetical protein LOC690899","chr20","+","NM_001044300","coding",29897558,29923381,100,"20q11",690899,"NM_001044300","RefSeq","Rattus norvegicus hypothetical protein LOC690899 (MGC112715), mRNA.","chr20",100,100,"NM_001044300","G3V9P3","NM_001044300","Rn.19946","connective tissue| eye| heart| kidney| lung| pituitary gland| placenta| prostate| spleen| juvenile| adult","NM_001044300","GO:0002725","negative regulation of T cell cytokine production","not recorded","NM_001044300","GO:0005886","plasma membrane","not recorded","ENSRNOT00000057752","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000057752","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",10.16,10.08,10.71,6.38,6.85,6.22]
["TC0500002749.rn.1",15.13,8.79,81.008,"up",4.48020719603912e-7,4.86410495014972e-5,"Abca1","ATP-binding cassette, subfamily A (ABC1), member 1","chr5","-","NM_178095","coding",69859632,69952466,509,"5q24",313210,"NM_178095","RefSeq","Rattus norvegicus ATP-binding cassette, subfamily A (ABC1), member 1 (Abca1), mRNA.","chr5",100,100,"NM_178095","A8J6V3","NM_178095","Rn.148916","adipose tissue| brain| dorsal root ganglion| liver| lung| muscle| ovary| pineal gland| placenta| juvenile| adult","NM_178095","GO:0002790","peptide secretion","inferred from electronic annotation","NM_178095","GO:0005794","Golgi apparatus","inferred from electronic annotation","NM_178095","GO:0005102","receptor binding","not recorded","NM_178095","GenMAPP","Statin_Pathway_PharmGKB","ENSRNOT00000024564","Pfam","IPR003439","ABC transporter-like","Coding",15.41,15.04,14.95,8.92,8.92,8.52]
["TC1000000338.rn.1",13.07,6.99,67.649,"up",4.65968552084068e-7,5.02754019767226e-5,"Lcp2","lymphocyte cytosolic protein 2","chr10","+","NM_130421","coding",18996523,19043291,202,"10q12",155918,"NM_130421","RefSeq","Rattus norvegicus lymphocyte cytosolic protein 2 (Lcp2), mRNA.","chr10",100,100,"NM_130421","Q920L0","NM_130421","Rn.1057","brain| connective tissue| dorsal root ganglion| kidney| lung| placenta| small intestine| spleen| testis| thymus| metamorphosing embryo| juvenile| adult","NM_130421","GO:0045576","mast cell activation","inferred from electronic annotation","NM_130421","GO:0005623","cell","not recorded","ENSRNOT00000046135","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000046135","Pfam","IPR000980","SH2 domain","Coding",12.87,12.87,13.46,7.02,7.12,6.84]
["TC0400003973.rn.1",12.35,6.15,73.517,"up",4.78125582078082e-7,5.09821041336672e-5,"Mgp","matrix Gla protein","chr4","-","NM_012862","coding",170856769,170860212,76,"4q43",25333,"NM_012862","RefSeq","Rattus norvegicus matrix Gla protein (Mgp), mRNA.","chr4",100,100,"NM_012862","P08494","NM_012862","Rn.2379","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| lung| muscle| nerve| ovary| pancreas| placenta| prostate| spleen| fetus| juvenile| adult","NM_012862","GO:0001503","ossification","inferred from expression pattern","NM_012862","GO:0005576","extracellular region","inferred from electronic annotation","NM_012862","GO:0005509","calcium ion binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000007577","Pfam","IPR000294","Gamma-carboxyglutamic acid-rich (GLA) domain","Coding",12.36,12.17,12.52,6.23,5.98,6.25]
["TC1000003808.rn.1",4.2,5.12,-1.892,"down",4.83436164900183e-7,5.09821041336672e-5,"Kcnh4","potassium voltage-gated channel, subfamily H (eag-related), member 4","chr10","-","NM_053630","coding",88647560,88667428,190,"10q32.1",114032,"NM_053630","RefSeq","Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 4 (Kcnh4), mRNA.","chr10",100,100,"NM_053630","Q9R1T9","NM_053630","Rn.30035",null,"NM_053630","GO:0000160","phosphorelay signal transduction system","inferred from electronic annotation","NM_053630","GO:0005887","integral component of plasma membrane","not recorded","NM_053630","GO:0000155","phosphorelay sensor kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025518","Pfam","IPR000595","Cyclic nucleotide-binding domain","Coding",4.22,4.2,4.19,5.11,5.08,5.17]
["TC0X00002376.rn.1",17.52,14.94,5.979,"up",4.84258084281566e-7,5.09821041336672e-5,"Lamp2","lysosomal-associated membrane protein 2","chrX","-","NM_017068","coding",124487396,124766084,124,"Xq11",24944,"NM_017068","RefSeq","Rattus norvegicus lysosomal-associated membrane protein 2 (Lamp2), mRNA.","chrX",100,100,"NM_017068","P17046","NM_017068","Rn.1722","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| fetus| juvenile| adult","NM_017068","GO:0050821","protein stabilization","not recorded","NM_017068","GO:0005764","lysosome","inferred from direct assay","NM_017068","GO:0019899","enzyme binding","not recorded",{"$nulls":3},"ENSRNOT00000000177","Pfam","IPR002000","Lysosome-associated membrane glycoprotein","Coding",17.53,17.4,17.62,15.05,15.16,14.61]
["TC1100001677.rn.1",10.91,6.74,18.001,"up",4.95630415105782e-7,5.18650357879671e-5,"Hcls1","hematopoietic cell specific Lyn substrate 1","chr11","-","NM_001011898","coding",66736964,66759446,167,"11q22",288077,"NM_001011898","RefSeq","Rattus norvegicus hematopoietic cell specific Lyn substrate 1 (Hcls1), mRNA.","chr11",100,100,"NM_001011898","Q68FX4","NM_001011898","Rn.15578","adipose tissue| brain| liver| lung| prostate| spleen| thymus| juvenile| adult","NM_001011898","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_001011898","GO:0005634","nucleus","not recorded","NM_001011898","GO:0001085","RNA polymerase II transcription factor binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000003326","Pfam","IPR001452","SH3 domain","Coding",11.01,10.69,11.02,6.81,6.66,6.75]
["TC0500003039.rn.1",8.84,10.41,-2.969,"down",5.0811427315757e-7,5.20927398438913e-5,"Ttc39b","tetratricopeptide repeat domain 39B","chr5","-","NM_001106665","coding",101304088,101405959,270,"5q31",298186,"NM_001106665","RefSeq","Rattus norvegicus tetratricopeptide repeat domain 39B (Ttc39b), mRNA.","chr5",100,100,"NM_001106665","D3ZC96","NM_001106665","Rn.204942","brain| connective tissue| dorsal root ganglion| pancreas| pituitary gland| prostate| adult",{"$nulls":15},"ENSRNOT00000058611","Pfam","IPR019412","Outer membrane protein, IML2, mitochondrial/Tetratricopeptide repeat protein 39","Coding",8.88,8.88,8.77,10.19,10.5,10.53]
["TC0X00000116.rn.1",15.31,6.01,630.346,"up",5.1464439980423e-7,5.20927398438913e-5,"Cybb","cytochrome b-245, beta polypeptide","chrX","+","NM_023965","coding",14578261,14612533,160,"Xq13",66021,"NM_023965","RefSeq","Rattus norvegicus cytochrome b-245, beta polypeptide (Cybb), mRNA.","chrX",100,100,"NM_023965","Q9ER28","NM_023965","Rn.98491","connective tissue| dorsal root ganglion| eye| kidney| lung| ovary| placenta| prostate| spleen| thymus| juvenile| adult","NM_023965","GO:0006801","superoxide metabolic process","not recorded","NM_023965","GO:0005622","intracellular","inferred from direct assay","NM_023965","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000038994","Pfam","IPR008333","Oxidoreductase, FAD-binding domain","Coding",15.93,14.95,15.04,5.9,6,6.12]
["TC0100005180.rn.1",12.22,6.21,64.445,"up",5.15758226140285e-7,5.20927398438913e-5,"Fxyd5","FXYD domain-containing ion transport regulator 5","chr1","-","NM_001270688","coding",89464851,89474277,127,"1q21",60338,"NM_001270688","RefSeq","Rattus norvegicus FXYD domain-containing ion transport regulator 5 (Fxyd5), transcript variant 2, mRNA.","chr1",100,100,"NM_001270688","P59647","NM_001270688","Rn.24997","adipose tissue| connective tissue| heart| pituitary gland| placenta| prostate| juvenile| adult","NM_001270688","GO:0034220","ion transmembrane transport","inferred from electronic annotation","NM_001270688","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001270688","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000028597","Pfam","IPR000272","Ion-transport regulator, FXYD motif","Coding",12.29,11.88,12.49,6.17,6.32,6.13]
["TC0100002396.rn.1",6.86,4.59,4.823,"up",5.17040322833401e-7,5.20927398438913e-5,"LOC691173","similar to cytoskeleton associated protein 2","chr1","+","LOC691173.aSep08-unspliced","coding",177912825,177922565,70,null,"NA","LOC691173.aSep08-unspliced","Ace View","similar to cytoskeleton associated protein 2","chr1",100,100,"ENSRNOT00000039493","F1LWK3",{"$nulls":22},"Coding",6.95,6.72,6.9,4.68,4.58,4.51]
["TC0400002320.rn.1",9.44,6.63,7.013,"up",5.23016507298739e-7,5.20927398438913e-5,"Abcb4","ATP-binding cassette, subfamily B (MDR/TAP), member 4","chr4","-","NM_012690","coding",22133984,22192474,350,"4q11-q12",24891,"NM_012690","RefSeq","Rattus norvegicus ATP-binding cassette, subfamily B (MDR/TAP), member 4 (Abcb4), mRNA.","chr4",100,100,"NM_012690","Q08201","NM_012690","Rn.82691","liver| juvenile","NM_012690","GO:0006200","ATP catabolic process","inferred from electronic annotation","NM_012690","GO:0000139","Golgi membrane","inferred from direct assay","NM_012690","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000043822","Pfam","IPR001140","ABC transporter, transmembrane domain","Coding",9.43,9.35,9.54,6.58,6.67,6.63]
["TC1400000249.rn.1",15.56,14.34,2.329,"up",5.23076513651286e-7,5.20927398438913e-5,"Scarb2","scavenger receptor class B, member 2","chr14","+","NM_054001","coding",17064096,17118176,150,"14p22",117106,"NM_054001","RefSeq","Rattus norvegicus scavenger receptor class B, member 2 (Scarb2), mRNA.","chr14",100,100,"NM_054001","P27615","NM_054001","Rn.3957","adipose tissue| brain| connective tissue| dorsal root ganglion| heart| muscle| ovary| prostate| small intestine| thymus| juvenile| adult","NM_054001","GO:0006622","protein targeting to lysosome","inferred from electronic annotation","NM_054001","GO:0005622","intracellular","not recorded","NM_054001","GO:0004872","receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000003052","Pfam","IPR002159","CD36 antigen","Coding",15.64,15.47,15.58,14.32,14.47,14.23]
["TC0800001851.rn.1",10.2,6.56,12.467,"up",5.24795893885267e-7,5.20927398438913e-5,"Ccr5","chemokine (C-C motif) receptor 5","chr8","+","NM_053960","coding",133197032,133215619,50,"8q32",117029,"NM_053960","RefSeq","Rattus norvegicus chemokine (C-C motif) receptor 5 (Ccr5), mRNA.","chr8",100,100,"NM_053960","O08556","NM_053960","Rn.10736","connective tissue| kidney| juvenile| adult","NM_053960","GO:0000165","MAPK cascade","not recorded","NM_053960","GO:0005737","cytoplasm","inferred from direct assay","NM_053960","GO:0001948","glycoprotein binding","inferred from physical interaction","NM_053960","GenMAPP","GPCRDB_Class_A_Rhodopsin-like","ENSRNOT00000075564","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",10.21,9.92,10.46,6.96,6.32,6.39]
["TC0100003865.rn.1",7.02,8.97,-3.864,"down",5.37773697929856e-7,5.30776528792019e-5,"Adrb1","adrenoceptor beta 1","chr1","+","NM_012701","coding",277537585,277540058,30,"1q55",24925,"NM_012701","RefSeq","Rattus norvegicus adrenoceptor beta 1 (Adrb1), mRNA.","chr1",100,100,"NM_012701","P18090","NM_012701","Rn.87064","pineal gland| placenta| adult","NM_012701","GO:0001996","positive regulation of heart rate by epinephrine-norepinephrine","inferred from electronic annotation","NM_012701","GO:0005634","nucleus","inferred from direct assay","NM_012701","GO:0004940","beta1-adrenergic receptor activity","inferred from direct assay","NM_012701","GenMAPP","Calcium_regulation_in_cardiac_cells","ENSRNOT00000022813","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",6.87,7.15,7.03,8.94,8.94,9.04]
["TC0400001721.rn.1",14.6,12.23,5.169,"up",5.64628310186943e-7,5.54133241596462e-5,null,"similar to cation-dependent mannose-6-phosphate receptor","chr4","+","ENSRNOT00000074291","coding",155088325,155092629,60,"Xq32",317202,"ENSRNOT00000074291","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:222115904:222120215:1 gene:ENSRNOG00000050076 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000074291","M0R535",{"$nulls":3},"ENSRNOT00000074291","GO:0015761","mannose transport","inferred from electronic annotation","ENSRNOT00000074291","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000074291","GO:0005537","mannose binding","inferred from electronic annotation",{"$nulls":7},"Coding",14.63,14.36,14.82,12.25,12.32,12.12]
["TC0200003857.rn.1",4.49,7.01,-5.736,"down",5.70299969900773e-7,5.56555099839681e-5,"Sptssb","serine palmitoyltransferase, small subunit B","chr2","-","NM_001271299","coding",166654036,166683129,110,null,100362555,"NM_001271299","RefSeq","Rattus norvegicus serine palmitoyltransferase, small subunit B (Sptssb), transcript variant 1, mRNA.","chr2",100,100,"NM_001271299","D3ZG45","NM_001271299","Rn.172334","brain| heart| juvenile| adult","NM_001271299","GO:0008152","metabolic process","inferred from electronic annotation","NM_001271299","GO:0017059","serine C-palmitoyltransferase complex","inferred from electronic annotation","NM_001271299","GO:0004758","serine C-palmitoyltransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012422","Pfam","IPR024512","Small subunit of serine palmitoyltransferase-like","Coding",4.53,4.45,4.48,6.88,7.39,6.77]
["TC1300001874.rn.1",6.67,8.69,-4.056,"down",5.75701778673649e-7,5.58688022197763e-5,"Hsd17b7","hydroxysteroid (17-beta) dehydrogenase 7","chr13","-","NM_017235","coding",88288116,88308028,208,"13q24",29540,"NM_017235","RefSeq","Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 7 (Hsd17b7), mRNA.","chr13",100,100,"NM_017235","Q62904","NM_017235","Rn.7040","brain| kidney| liver| ovary| pituitary gland| prostate| spleen| juvenile| adult","NM_017235","GO:0006695","cholesterol biosynthetic process","inferred from electronic annotation","NM_017235","GO:0005783","endoplasmic reticulum","inferred from electronic annotation","NM_017235","GO:0000253","3-keto sterol reductase activity","inferred from electronic annotation","NM_017235","GenMAPP","Steroid_Biosynthesis","ENSRNOT00000003812","Pfam","IPR002198","Short-chain dehydrogenase/reductase SDR","Coding",6.78,6.45,6.77,8.65,8.86,8.55]
["TC0800003505.rn.1",11.96,6.39,47.505,"up",5.90519584479288e-7,5.69884205666095e-5,"Tgfbr2","transforming growth factor, beta receptor 2","chr8","-","NM_031132","coding",124310289,124399246,90,"8q32",81810,"NM_031132","RefSeq","Rattus norvegicus transforming growth factor, beta receptor 2 (Tgfbr2), mRNA.","chr8",100,100,"NM_031132","P38438","NM_031132","Rn.9954","brain| colon| connective tissue| dorsal root ganglion| eye| heart| muscle| ovary| pineal gland| pituitary gland| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_031132","GO:0001569","patterning of blood vessels","inferred from electronic annotation","NM_031132","GO:0005737","cytoplasm","inferred from direct assay","NM_031132","GO:0004675","transmembrane receptor protein serine/threonine kinase activity","not recorded","NM_031132","GenMAPP","TGF_Beta_Signaling_Pathway","ENSRNOT00000037883","Pfam","IPR000719","Protein kinase domain","Coding",11.98,11.8,12.1,6.38,6.69,6.09]
["TC1300000444.rn.1",9.38,11.58,-4.595,"down",5.98890912618548e-7,5.74769836635182e-5,"Ptgs2","prostaglandin-endoperoxide synthase 2","chr13","+","NM_017232","coding",67350819,67359343,150,"13q21",29527,"NM_017232","RefSeq","Rattus norvegicus prostaglandin-endoperoxide synthase 2 (Ptgs2), mRNA.","chr13",100,100,"NM_017232","P35355","NM_017232","Rn.44369","brain| connective tissue| eye| pancreas| prostate| adult","NM_017232","GO:0001516","prostaglandin biosynthetic process","inferred from mutant phenotype","NM_017232","GO:0005634","nucleus","not recorded","NM_017232","GO:0004601","peroxidase activity","inferred from electronic annotation","NM_017232","GenMAPP","Eicosanoid_Synthesis",{"$nulls":4},"Coding",9.05,9.55,9.55,11.52,11.63,11.59]
["TC1100000676.rn.1",10.74,4.68,66.718,"up",6.0650247111741e-7,5.75995978467012e-5,"Cd86","CD86 molecule","chr11","+","NM_020081","coding",67060381,67118606,93,"11q22",56822,"NM_020081","RefSeq","Rattus norvegicus CD86 molecule (Cd86), mRNA.","chr11",100,100,"NM_020081","O35531","NM_020081","Rn.229570","colon| eye| liver| placenta| adult","NM_020081","GO:0001878","response to yeast","inferred from expression pattern","NM_020081","GO:0009897","external side of plasma membrane","inferred from electronic annotation","NM_020081","GO:0005102","receptor binding","inferred from physical interaction","NM_020081","GenMAPP","Inflammatory_Response_Pathway","ENSRNOT00000003129","Pfam","IPR013162","CD80-like, immunoglobulin C2-set","Coding",10.69,10.5,11.02,4.55,5.08,4.41]
["TC0200000287.rn.1",10.77,5.14,49.522,"up",6.17167766174192e-7,5.79682429762031e-5,"Cd180","CD180 molecule","chr2","+","NM_001106405","coding",32820286,32833223,110,"2q12",294706,"NM_001106405","RefSeq","Rattus norvegicus CD180 molecule (Cd180), mRNA.","chr2",100,100,"NM_001106405","D3ZIP2","NM_001106405","Rn.148663","lung| pituitary gland| placenta| adult","NM_001106405","GO:0002322","B cell proliferation involved in immune response","inferred from electronic annotation",{"$nulls":15},"Coding",10.52,10.46,11.33,5.27,4.99,5.15]
["TC0400001713.rn.1",14.46,5.69,436.549,"up",6.17357950066062e-7,5.79682429762031e-5,"A2m","alpha-2-macroglobulin","chr4","+","NM_012488","coding",154309404,154359138,350,"4q42",24153,"NM_012488","RefSeq","Rattus norvegicus alpha-2-macroglobulin (A2m), mRNA.","chr4",100,100,"NM_012488","P06238","NM_012488","Rn.225884","colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| liver| ovary| pineal gland| placenta| spleen| fetus| juvenile| adult","NM_012488","GO:0001869","negative regulation of complement activation, lectin pathway","not recorded","NM_012488","GO:0005615","extracellular space","inferred from electronic annotation","NM_012488","GO:0002020","protease binding","not recorded",{"$nulls":3},"ENSRNOT00000019346","Pfam","IPR001599","Alpha-2-macroglobulin","Coding",14.75,14.5,14.13,5.85,5.81,5.42]
["TC0100004859.rn.1",9.71,8.53,2.266,"up",6.25703399265387e-7,5.81234959820269e-5,"Gltscr2","glioma tumor suppressor candidate region gene 2","chr1","-","NM_207591","coding",77836204,77844070,149,"1q21",292624,"NM_207591","RefSeq","Rattus norvegicus glioma tumor suppressor candidate region gene 2 (Gltscr2), mRNA.","chr1",100,100,"NM_207591","Q6QLN3","NM_207591","Rn.8075","brain| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| nerve| ovary| pancreas| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_207591","GO:0005730","nucleolus","inferred from electronic annotation","NM_207591","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":3},"ENSRNOT00000017555","Pfam","IPR011687","P60-like","Coding",9.87,9.65,9.62,8.55,8.55,8.48]
["TC0100007074.rn.1",6.26,8.26,-4,"down",6.48891969092918e-7,5.96396952122385e-5,"Syt12","synaptotagmin XII","chr1","-","NM_138835","coding",219688970,219719359,90,"1q42",191595,"NM_138835","RefSeq","Rattus norvegicus synaptotagmin XII (Syt12), mRNA.","chr1",100,100,"NM_138835","P97610","NM_138835","Rn.10682","brain| connective tissue| juvenile| adult","NM_138835","GO:0046928","regulation of neurotransmitter secretion","non-traceable author statement","NM_138835","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000026152","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000026152","Pfam","IPR000008","C2 domain","Coding",6.41,6.22,6.15,8.11,8.42,8.26]
["TC0900001083.rn.1",10.86,5.97,29.651,"up",6.55727114464272e-7,5.99507142387309e-5,"Inpp5d","inositol polyphosphate-5-phosphatase D","chr9","+","NM_019311","coding",94745217,94850778,270,"9q35",54259,"NM_019311","RefSeq","Rattus norvegicus inositol polyphosphate-5-phosphatase D (Inpp5d), mRNA.","chr9",100,100,"NM_019311","P97573","NM_019311","Rn.10659","connective tissue| eye| lung| ovary| prostate| thymus| juvenile| adult","NM_019311","GO:0002376","immune system process","inferred from electronic annotation","NM_019311","GO:0005622","intracellular","not recorded","NM_019311","GO:0004445","inositol-polyphosphate 5-phosphatase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051338","Pfam","IPR000980","SH2 domain","Coding",10.6,10.58,11.39,6.03,6.01,5.88]
["TC0800003352.rn.1",14.63,12.92,3.272,"up",6.64021378644175e-7,6.03911799394134e-5,"Gnai2","guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2","chr8","-","NM_031035","coding",116370729,116391342,186,"8q32",81664,"NM_031035","RefSeq","Rattus norvegicus guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 (Gnai2), mRNA.","chr8",100,100,"NM_031035","P04897","NM_031035","Rn.3036","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_031035","GO:0000186","activation of MAPKK activity","inferred from mutant phenotype","NM_031035","GO:0005634","nucleus","inferred from direct assay","NM_031035","GO:0001664","G-protein coupled receptor binding","not recorded","NM_031035","GenMAPP","G_Protein_Signaling","ENSRNOT00000022550","Pfam","IPR001019","Guanine nucleotide binding protein (G-protein), alpha subunit","Coding",14.69,14.55,14.65,13.07,12.93,12.75]
["TC1100000953.rn.1",10.1,5.66,21.706,"up",6.67511303117118e-7,6.03923898252472e-5,"Klhl6","kelch-like family member 6","chr11","+","NM_001105867","coding",84745958,84785315,110,"11q23",287974,"NM_001105867","RefSeq","Rattus norvegicus kelch-like family member 6 (Klhl6), mRNA.","chr11",100,100,"NM_001105867","D4A1Z1","NM_001105867","Rn.229155","placenta| prostate| spleen| testis| thymus| juvenile| adult","NM_001105867","GO:0002467","germinal center formation","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000002617","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002617","Pfam","IPR006652","Kelch repeat type 1","Coding",10.03,9.85,10.41,5.83,5.72,5.42]
["TC0300000117.rn.1",14.14,12.22,3.784,"up",6.76186212741654e-7,6.07265402307232e-5,"LOC100911966","similar to 60S ribosomal protein L7a","chr3","+","ENSRNOT00000006754","coding",4867040,4869705,82,"15p14",305779,"ENSRNOT00000006754","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:10222430:10224853:1 gene:ENSRNOG00000049097 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000006754","F1M013","ENSRNOT00000006754","Rn.144857","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000006754","GO:0042254","ribosome biogenesis","inferred from electronic annotation","ENSRNOT00000006754","GO:0005634","nucleus","not recorded","ENSRNOT00000006754","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":3},"ENSRNOT00000006754","Pfam","IPR004038","Ribosomal protein L7Ae/L30e/S12e/Gadd45","Coding",14.22,14.1,14.09,12.29,12.14,12.24]
["TC0800000042.rn.1",14.87,4.7,1152.06,"up",6.78196350512941e-7,6.07265402307232e-5,"Mmp12","matrix metallopeptidase 12","chr8","+","NM_053963","coding",5606592,5616494,110,"8q11",117033,"NM_053963","RefSeq","Rattus norvegicus matrix metallopeptidase 12 (Mmp12), mRNA.","chr8",100,100,"NM_053963","Q63341","NM_053963","Rn.33193","eye| lung| ovary| placenta| thymus| juvenile| adult","NM_053963","GO:0006508","proteolysis","inferred from electronic annotation","NM_053963","GO:0005578","proteinaceous extracellular matrix","inferred from electronic annotation","NM_053963","GO:0004222","metalloendopeptidase activity","inferred from electronic annotation","NM_053963","GenMAPP","Matrix_Metalloproteinases","ENSRNOT00000011727","Pfam","IPR001818","Peptidase M10, metallopeptidase","Coding",15.61,14.47,14.53,4.68,4.41,5]
["TC0400004146.rn.1",13.69,5.39,315.173,"up",6.90424280354434e-7,6.1504411148907e-5,"A2m","alpha-2-macroglobulin (A2m), mRNA","chr4","+","NM_012488_2","coding",154422802,154482573,410,null,"NA","NM_012488_2","RefSeq","alpha-2-macroglobulin (A2m), mRNA","chr4",100,100,"ENSRNOT00000075799","M0R9G2",{"$nulls":3},"ENSRNOT00000075799","GO:0010951","negative regulation of endopeptidase activity","inferred from electronic annotation","ENSRNOT00000075799","GO:0005576","extracellular region","inferred from electronic annotation","ENSRNOT00000075799","GO:0004866","endopeptidase inhibitor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000075799","Pfam","IPR001599","Alpha-2-macroglobulin","Coding",13.98,13.73,13.37,5.53,5.52,5.13]
["TC1900001051.rn.1",13.19,8.33,29.041,"up",7.03401457271761e-7,6.20242980419683e-5,"Lpcat2","lysophosphatidylcholine acyltransferase 2","chr19","-","NM_001271344","coding",15470609,15540855,200,"19p11",100359680,"NM_001271344","RefSeq","Rattus norvegicus lysophosphatidylcholine acyltransferase 2 (Lpcat2), mRNA.","chr19",100,100,"NM_001271344","F1LN03","NM_001271344","Rn.81758","brain| connective tissue| dorsal root ganglion| lung| placenta| adult","NM_001271344","GO:0006663","platelet activating factor biosynthetic process","inferred from electronic annotation","NM_001271344","GO:0000139","Golgi membrane","inferred from electronic annotation","NM_001271344","GO:0003841","1-acylglycerol-3-phosphate O-acyltransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022359","Pfam","IPR002048","EF-hand domain","Coding",13.09,12.67,13.81,8.2,8.45,8.35]
["TC0300000459.rn.1",10.34,7.07,9.646,"up",7.07631116058608e-7,6.20821218033034e-5,"Nek6","NIMA-related kinase 6","chr3","+","NM_001277232","coding",22811927,22888784,200,"3q11",360161,"NM_001277232","RefSeq","Rattus norvegicus NIMA-related kinase 6 (Nek6), transcript variant 2, mRNA.","chr3",100,100,"NM_001277232","B1H218","NM_001277232","Rn.18744","adipose tissue| brain| colon| dorsal root ganglion| heart| liver| lung| placenta| small intestine| spleen| thymus|tailbud embryo| fetus| adult","NM_001277232","GO:0006468","protein phosphorylation","not recorded","NM_001277232","GO:0000922","spindle pole","inferred from electronic annotation","NM_001277232","GO:0000287","magnesium ion binding","not recorded",{"$nulls":3},"ENSRNOT00000014630","Pfam","IPR000719","Protein kinase domain","Coding",10.17,10.15,10.7,6.98,7.28,6.94]
["TC0500001023.rn.1",8.82,7.31,2.848,"up",7.32397370958537e-7,6.39320338237223e-5,"LOC100912024","uncharacterized LOC100912024","chr5","+","ENSRNOT00000046475","coding",116972453,116973662,30,null,100912024,"ENSRNOT00000046475","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:120915861:120916316:1 gene:ENSRNOG00000032944 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000046475","M0R5K9",{"$nulls":3},"ENSRNOT00000046475","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000046475","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000046475","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000046475","Pfam","IPR001892","Ribosomal protein S13","Coding",8.86,8.9,8.71,7.34,7.25,7.35]
["TC0100000914.rn.1",12.45,10.6,3.605,"up",7.51741776875657e-7,6.52925320305352e-5,"LOC100910073","40S ribosomal protein S19-like","chr1","+","mRNARGD6500529_1","coding",77813383,77813876,30,null,"NA","mRNARGD6500529_1","Rat Genome Database","40S ribosomal protein S19-like","chr1",100,100,{"$nulls":24},"Coding",12.59,12.45,12.31,10.47,10.59,10.74]
["TC0800001652.rn.1",10.69,6.66,16.336,"up",7.66241235367467e-7,6.59006843877676e-5,"Glb1","galactosidase, beta 1","chr8","+","NM_001108192","coding",122439095,122511939,219,"8q32",316033,"NM_001108192","RefSeq","Rattus norvegicus galactosidase, beta 1 (Glb1), mRNA.","chr8",100,100,"NM_001108192","D3ZUM4","NM_001108192","Rn.4187","brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| placenta| prostate| spleen|tailbud embryo| fetus| juvenile| adult","NM_001108192","GO:0019388","galactose catabolic process","inferred from direct assay","NM_001108192","GO:0005737","cytoplasm","not recorded","NM_001108192","GO:0004565","beta-galactosidase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000013632","Pfam","IPR001944","Glycoside hydrolase, family 35","Coding",10.51,10.51,11.06,6.49,6.82,6.68]
["TC1200000819.rn.1",13.85,10.56,9.781,"up",7.68133431829015e-7,6.59006843877676e-5,"Selplg","selectin P ligand","chr12","+","NM_001013230","coding",48577899,48579546,66,"12q16",363930,"NM_001013230","RefSeq","Rattus norvegicus selectin P ligand (Selplg), mRNA.","chr12",100,100,"NM_001013230","A7WPA8","NM_001013230","Rn.215585","brain| spleen| juvenile","NM_001013230","GO:0050901","leukocyte tethering or rolling","inferred from electronic annotation","NM_001013230","GO:0005886","plasma membrane","inferred from electronic annotation","ENSRNOT00000000888","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",13.72,13.49,14.34,10.82,10.51,10.35]
["TC1600001346.rn.1",13.01,8.99,16.223,"up",7.73373482226392e-7,6.59006843877676e-5,"Tpm4","tropomyosin 4","chr16","-","NM_012678","coding",19384590,19409355,169,"16p14",24852,"NM_012678","RefSeq","Rattus norvegicus tropomyosin 4 (Tpm4), mRNA.","chr16",100,100,"NM_012678","P09495","NM_012678","Rn.108199","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_012678","GO:0001649","osteoblast differentiation","not recorded","NM_012678","GO:0001725","stress fiber","inferred from electronic annotation","NM_012678","GO:0003779","actin binding","inferred from electronic annotation","NM_012678","GenMAPP","Striated_muscle_contraction","ENSRNOT00000021073","Pfam","IPR000533","Tropomyosin","Coding",13.06,13.01,12.97,9.09,9.13,8.74]
["TC1400002279.rn.1",11.86,6.27,48.168,"up",7.73918577808105e-7,6.59006843877676e-5,"Plek","pleckstrin","chr14","-","NM_001025750","coding",100151518,100184192,100,"14q22",364206,"NM_001025750","RefSeq","Rattus norvegicus pleckstrin (Plek), mRNA.","chr14",100,100,"NM_001025750","Q4KM33","NM_001025750","Rn.6178","connective tissue| heart| lung| prostate| spleen| adult","NM_001025750","GO:0002244","hematopoietic progenitor cell differentiation","inferred from electronic annotation","NM_001025750","GO:0005622","intracellular","not recorded","NM_001025750","GO:0005080","protein kinase C binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007044","Pfam","IPR000591","DEP domain","Coding",11.66,11.21,12.72,6.29,6.1,6.43]
["TC0100001307.rn.1",9.1,5.23,14.621,"up",7.80904754081649e-7,6.61712023568406e-5,"Cebpa","CCAAT/enhancer binding protein (C/EBP), alpha","chr1","+","NM_001287577","coding",91363483,91366164,40,"1q22",24252,"NM_001287577","RefSeq","Rattus norvegicus CCAAT/enhancer binding protein (C/EBP), alpha (Cebpa), transcript variant 1, mRNA.","chr1",100,100,"NM_001287577","P05554","NM_001287577","Rn.204833","liver| lung| ovary| placenta| juvenile| adult",{"$nulls":4},"NM_001287577","GO:0005634","nucleus","inferred from direct assay","NM_001287577","GO:0000978","RNA polymerase II core promoter proximal region sequence-specific DNA binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000014517","Pfam","IPR004827","Basic-leucine zipper domain","Coding",8.96,9.08,9.25,4.96,5.58,5.15]
["TC0600002860.rn.1",12.89,8.39,22.627,"up",8.01252768302664e-7,6.72394291699786e-5,"Npc2","Niemann-Pick disease, type C2","chr6","-","NM_173118","coding",108467410,108488460,83,"6q31",286898,"NM_173118","RefSeq","Rattus norvegicus Niemann-Pick disease, type C2 (Npc2), mRNA.","chr6",100,100,"NM_173118","Q8CHN5","NM_173118","Rn.3491","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| thymus| vibrissa| fetus| juvenile| adult","NM_173118","GO:0009615","response to virus","inferred from electronic annotation","NM_173118","GO:0005622","intracellular","not recorded","NM_173118","GO:0015485","cholesterol binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016076","Pfam","IPR003172","MD-2-related lipid-recognition domain","Coding",13.03,12.61,13.04,8.94,8.44,7.78]
["TC0100006166.rn.1",12.45,4.91,186.108,"up",8.05146446983784e-7,6.72413410122852e-5,"Folr2","folate receptor 2 (fetal)","chr1","-","NM_001106283","coding",166915045,166933377,90,"1q32",293154,"NM_001106283","RefSeq","Rattus norvegicus folate receptor 2 (fetal) (Folr2), mRNA.","chr1",100,100,"NM_001106283","D4A4S5","NM_001106283","Rn.8801","connective tissue| kidney| adult","NM_001106283","GO:0015884","folic acid transport","inferred from electronic annotation","NM_001106283","GO:0031362","anchored component of external side of plasma membrane","inferred from electronic annotation","NM_001106283","GO:0005542","folic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000026925","Pfam","IPR018143","Folate receptor-like","Coding",13.06,12.18,12.11,4.99,4.86,4.89]
["TC0600001949.rn.1",12.49,8.21,19.427,"up",8.27906983469529e-7,6.82478432205726e-5,"Rasgrp3","RAS guanyl releasing protein 3 (calcium and DAG-regulated)","chr6","-","NM_001108009","coding",21072613,21171587,281,"6q12",313874,"NM_001108009","RefSeq","Rattus norvegicus RAS guanyl releasing protein 3 (calcium and DAG-regulated) (Rasgrp3), mRNA.","chr6",100,100,"NM_001108009","D3ZZN2","NM_001108009","Rn.1995","brain| connective tissue| heart| lung| muscle| ovary| pancreas| prostate| adult","NM_001108009","GO:0007265","Ras protein signal transduction","inferred from electronic annotation","NM_001108009","GO:0005737","cytoplasm","not recorded","NM_001108009","GO:0005088","Ras guanyl-nucleotide exchange factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051239","Pfam","IPR001895","Ras guanine-nucleotide exchange factors catalytic domain","Coding",12.21,12.18,13.07,8.28,8.33,8.03]
["TC1700001617.rn.1",10.66,5.65,32.223,"up",8.29865279032482e-7,6.82478432205726e-5,"Ly86","lymphocyte antigen 86","chr17","-","NM_001106128","coding",28104566,28191431,78,"17p12",291359,"NM_001106128","RefSeq","Rattus norvegicus lymphocyte antigen 86 (Ly86), mRNA.","chr17",100,100,"NM_001106128","D3ZAS0","NM_001106128","Rn.3176","brain| connective tissue| placenta| fetus| adult","NM_001106128","GO:0031666","positive regulation of lipopolysaccharide-mediated signaling pathway","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000000149","Pfam","IPR003172","MD-2-related lipid-recognition domain","Coding",10.74,10.04,11.2,5.99,5.44,5.51]
["TSUnmapped00000016.rn.1",12.57,7.06,45.57,"up",8.36153145569975e-7,6.82478432205726e-5,"RT1-DMa","RT1 class II, locus DMa",null,null,"NM_198741","coding","NA","NA",30,"20p12",294274,"NM_198741","RefSeq","Rattus norvegicus RT1 class II, locus DMa (RT1-DMa), mRNA.",null,100,100,"NM_198741","Q31252","NM_198741","Rn.35809","adipose tissue| brain| colon| connective tissue| embryonic tissue| eye| heart| lung| pancreas| placenta| prostate| spleen| thymus| juvenile| adult","NM_198741","GO:0002503","peptide antigen assembly with MHC class II protein complex","not recorded","NM_198741","GO:0005622","intracellular","not recorded","NM_198741","GO:0023026","MHC class II protein complex binding","not recorded",{"$nulls":7},"Coding",12.51,12.13,13.06,6.91,7.23,7.03]
["TC1400000125.rn.1",9.71,5.58,17.509,"up",8.36842473431695e-7,6.82478432205726e-5,"Slc10a6","solute carrier family 10 (sodium/bile acid cotransporter), member 6","chr14","+","NM_198049","coding",7618022,7682377,80,"14p22",289459,"NM_198049","RefSeq","Rattus norvegicus solute carrier family 10 (sodium/bile acid cotransporter), member 6 (Slc10a6), mRNA.","chr14",100,100,"NM_198049","Q70EX6","NM_198049","Rn.231621",null,"NM_198049","GO:0006814","sodium ion transport","inferred from electronic annotation","NM_198049","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_198049","GO:0008508","bile acid:sodium symporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002819","Pfam","IPR002657","Bile acid:sodium symporter","Coding",10.19,9.67,9.26,5.39,5.49,5.85]
["TC0500001245.rn.1",12.96,11.15,3.506,"up",8.5688374705087e-7,6.83282138572822e-5,"Efcab14","EF-hand calcium binding domain 14","chr5","+","NM_001106677","coding",134593455,134633840,160,"5q36",298425,"NM_001106677","RefSeq","Rattus norvegicus EF-hand calcium binding domain 14 (Efcab14), mRNA.","chr5",100,100,"NM_001106677","D3ZTM7","NM_001106677","Rn.23067","adipose tissue| adrenal gland| brain| colon| connective tissue| embryonic tissue| eye| heart| lung| pancreas| pineal gland| pituitary gland| placenta| prostate|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":19},"Coding",13.03,12.83,13.01,11.17,11.24,11.03]
["TC0300000461.rn.1",15.31,13.52,3.458,"up",8.5749528644796e-7,6.83282138572822e-5,"LOC100362149","similar to 40S ribosomal protein S20","chr3","+","ENSRNOT00000041813","coding",22964212,22964740,30,"5q22",500451,"ENSRNOT00000041813","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:28188757:28189261:1 gene:ENSRNOG00000029627 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000041813","P60868","ENSRNOT00000041813","Rn.103133","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| vibrissa| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000041813","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000041813","GO:0022627","cytosolic small ribosomal subunit","inferred from direct assay","ENSRNOT00000041813","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000041813","Pfam","IPR027486","Ribosomal protein S10 domain","Coding",15.42,15.22,15.28,13.67,13.65,13.23]
["TSUnmapped00000027.rn.1",15.31,13.52,3.458,"up",8.5749528644796e-7,6.83282138572822e-5,"Rps20","ribosomal protein S20",null,null,"NM_001007603","coding","NA","NA",30,"5q12",122772,"NM_001007603","RefSeq","Rattus norvegicus ribosomal protein S20 (Rps20), mRNA.",null,100,100,"NM_001007603","P60868","NM_001007603","Rn.103133","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_001007603","GO:0006412","translation","inferred from electronic annotation","NM_001007603","GO:0022627","cytosolic small ribosomal subunit","inferred from direct assay","NM_001007603","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":7},"Coding",15.42,15.22,15.28,13.67,13.65,13.23]
["TC1000004206.rn.1",12.47,11.04,2.694,"up",8.6374116333398e-7,6.85116335537651e-5,"Timp2","TIMP metallopeptidase inhibitor 2","chr10","-","NM_021989","coding",107336673,107386323,110,"10q32.3",29543,"NM_021989","RefSeq","Rattus norvegicus TIMP metallopeptidase inhibitor 2 (Timp2), mRNA.","chr10",100,100,"NM_021989","P30121","NM_021989","Rn.10161","adipose tissue| brain| connective tissue| eye| heart| kidney| lung| muscle| nerve| ovary| pineal gland| pituitary gland| placenta| prostate| thymus| vibrissa| juvenile| adult","NM_021989","GO:0007283","spermatogenesis","non-traceable author statement","NM_021989","GO:0005604","basement membrane","inferred from electronic annotation","NM_021989","GO:0005178","integrin binding","inferred from physical interaction","NM_021989","GenMAPP","Matrix_Metalloproteinases","ENSRNOT00000004290","Pfam","IPR001820","Proteinase inhibitor I35, tissue inhibitor of metalloproteinase","Coding",12.5,12.6,12.3,11.11,11.05,10.96]
["TC1300001556.rn.1",11.23,5.21,64.893,"up",8.72664201647471e-7,6.89047720309919e-5,"Rgs1","regulator of G-protein signaling 1","chr13","-","NM_019336","coding",61066188,61070592,80,"13q21",54289,"NM_019336","RefSeq","Rattus norvegicus regulator of G-protein signaling 1 (Rgs1), mRNA.","chr13",100,100,"NM_019336","P97844","NM_019336","Rn.14787","kidney| lung| prostate| small intestine| spleen| thymus| adult","NM_019336","GO:0038032","termination of G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_019336","GO:0005737","cytoplasm","not recorded","NM_019336","GO:0005096","GTPase activator activity","not recorded","NM_019336","GenMAPP","Calcium_regulation_in_cardiac_cells","ENSRNOT00000005251","Pfam","IPR000342","Regulator of G protein signalling domain","Coding",11.91,10.64,11.15,5.53,5.06,5.03]
["TC1900000750.rn.1",9.83,5.61,18.636,"up",8.87284143851479e-7,6.9742139650878e-5,"Irf8","interferon regulatory factor 8","chr19","+","NM_001008722","coding",54318463,54336642,90,"19q12",292060,"NM_001008722","RefSeq","Rattus norvegicus interferon regulatory factor 8 (Irf8), mRNA.","chr19",100,100,"NM_001008722","Q5NUI4","NM_001008722","Rn.228738","lung| placenta| prostate| fetus| adult","NM_001008722","GO:0006909","phagocytosis","inferred from electronic annotation","NM_001008722","GO:0005634","nucleus","inferred from electronic annotation","NM_001008722","GO:0000975","regulatory region DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024069","Pfam","IPR001346","Interferon regulatory factor DNA-binding domain","Coding",9.55,9.55,10.39,5.96,5.52,5.35]
["TC0100000209.rn.1",16.28,14.42,3.63,"up",8.9998213380944e-7,7.04215749838008e-5,"LOC100360791","tumor protein, translationally-controlled 1","chr1","+","ENSRNOT00000044222","coding",20115897,20116749,25,null,100360791,"ENSRNOT00000044222","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:21603257:21604069:1 gene:ENSRNOG00000033517 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000044222","M0R8Q2",{"$nulls":18},"ENSRNOT00000044222","Pfam","IPR018105","Translationally controlled tumour protein","Coding",16.2,16.54,16.09,14.39,14.41,14.46]
["TSUnmapped00000118.rn.1",14.08,12.64,2.713,"up",9.08767829308899e-7,7.05961512431881e-5,"Rps10","ribosomal protein S10",null,null,"NM_031109","coding","NA","NA",30,"20p12",81773,"NM_031109","RefSeq","Rattus norvegicus ribosomal protein S10 (Rps10), mRNA.",null,100,100,"NM_031109","P63326","NM_031109","Rn.3359","adrenal gland| brain| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| pancreas| pituitary gland| spleen| vibrissa| juvenile| adult","NM_031109","GO:0000028","ribosomal small subunit assembly","inferred from mutant phenotype","NM_031109","GO:0005730","nucleolus","not recorded","NM_031109","GO:0003735","structural constituent of ribosome","inferred from mutant phenotype",{"$nulls":7},"Coding",14.14,13.93,14.16,12.73,12.58,12.6]
["TC0800003653.rn.1",9.68,5.4,19.427,"up",9.103412514233e-7,7.05961512431881e-5,"Il18","interleukin 18","chr8","+","NM_019165","coding",54999914,55016288,96,"8q23",29197,"NM_019165","RefSeq","Rattus norvegicus interleukin 18 (Il18), mRNA.","chr8",100,100,"NM_019165","P97636","NM_019165","Rn.11118","brain| connective tissue| eye| kidney| lung| ovary| spleen| juvenile| adult","NM_019165","GO:0000165","MAPK cascade","not recorded","NM_019165","GO:0005615","extracellular space","inferred from direct assay","NM_019165","GO:0005125","cytokine activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000013093","Pfam","IPR000975","Interleukin-1 family","Coding",9.58,9.55,9.91,5.42,5.32,5.47]
["TC0400001245.rn.1",12.95,9.05,14.929,"up",9.18853122875418e-7,7.08011884269493e-5,"Mob1a","MOB kinase activator 1A","chr4","+","NM_001033891","coding",115024882,115041901,145,"4q34",297387,"NM_001033891","RefSeq","Rattus norvegicus MOB kinase activator 1A (Mob1a), mRNA.","chr4",100,100,"NM_001033891","Q3T1J9","NM_001033891","Rn.74475","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| placenta| prostate| small intestine| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001033891","GO:0035329","hippo signaling","inferred from electronic annotation","NM_001033891","GO:0070062","extracellular vesicular exosome","not recorded","NM_001033891","GO:0046872","metal ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000064479","Pfam","IPR005301","Mob1/phocein","Coding",12.86,12.74,13.26,8.96,9.21,8.99]
["TC1500000852.rn.1",16.41,15.36,2.071,"up",9.52215099319388e-7,7.2104614276178e-5,"Tpt1","tumor protein, translationally-controlled 1","chr15","+","NM_053867","coding",57891227,57894560,111,"15q11",116646,"NM_053867","RefSeq","Rattus norvegicus tumor protein, translationally-controlled 1 (Tpt1), mRNA.","chr15",100,100,"NM_053867","P63029","NM_053867","Rn.36610","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_053867","GO:0007283","spermatogenesis","inferred from expression pattern","NM_053867","GO:0005615","extracellular space","not recorded","NM_053867","GO:0005509","calcium ion binding","not recorded",{"$nulls":3},"ENSRNOT00000001383","Pfam","IPR018105","Translationally controlled tumour protein","Coding",16.44,16.32,16.46,15.46,15.31,15.3]
["TC1700001116.rn.1",7.78,9.6,-3.531,"down",9.54273832188642e-7,7.2104614276178e-5,"Etl4","enhancer trap locus 4","chr17","+","ENSRNOT00000011646","coding",87208206,87681268,378,"17q12.3",291356,"ENSRNOT00000011646","ENSEMBL","ensembl:known chromosome:Rnor_5.0:17:89090162:89370265:1 gene:ENSRNOG00000008666 gene_biotype:protein_coding transcript_biotype:protein_coding","chr17",100,100,"ENSRNOT00000011646","F1M3L5","ENSRNOT00000011646","Rn.232681","prostate| adult","ENSRNOT00000011646","GO:0048706","embryonic skeletal system development","inferred from electronic annotation","ENSRNOT00000011646","GO:0005737","cytoplasm","not recorded",{"$nulls":7},"ENSRNOT00000011646","Pfam","IPR022782","Actin interacting protein 3, C-terminal","Coding",7.81,7.75,7.79,9.41,9.63,9.75]
["TC0200004691.rn.1",15.06,13.76,2.462,"up",9.68593793211368e-7,7.28374146401501e-5,"Rpl34","ribosomal protein L34","chr2","-","NM_001108567","coding",235850281,235867129,60,"2q43",362041,"NM_001108567","RefSeq","Rattus norvegicus ribosomal protein L34 (Rpl34), mRNA.","chr2",100,100,"NM_001108567","B2RZD4","NM_001108567","Rn.2028","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| lung| nerve| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| vibrissa| metamorphosing embryo| fetus| adult","NM_001108567","GO:0006412","translation","inferred from electronic annotation","NM_001108567","GO:0005739","mitochondrion","not recorded","NM_001108567","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005772","Pfam","IPR008195","Ribosomal protein L34Ae","Coding",15.02,15,15.17,13.89,13.78,13.61]
["TC0800002176.rn.1",7.66,4.44,9.318,"up",1.00734260813268e-6,7.54247777839344e-5,"St14","suppression of tumorigenicity 14 (colon carcinoma)","chr8","-","NM_053635","coding",32240108,32280813,200,"8q13",114093,"NM_053635","RefSeq","Rattus norvegicus suppression of tumorigenicity 14 (colon carcinoma) (St14), mRNA.","chr8",100,100,"NM_053635","Q9JJI7","NM_053635","Rn.49170","adrenal gland| pancreas| placenta| prostate| small intestine| adult","NM_053635","GO:0006508","proteolysis","inferred from direct assay","NM_053635","GO:0005576","extracellular region","not recorded","NM_053635","GO:0004252","serine-type endopeptidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009139","Pfam","IPR000082","SEA domain","Coding",8,7.13,7.86,4.53,4.32,4.48]
["TC1700000506.rn.1",10.35,5.43,30.274,"up",1.02670056320363e-6,7.60666533645778e-5,"Serpinb1a","serine (or cysteine) proteinase inhibitor, clade B, member 1a","chr17","+","NM_001031642","coding",32903060,32911500,70,"17p12",291091,"NM_001031642","RefSeq","Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade B, member 1a (Serpinb1a), mRNA.","chr17",100,100,"NM_001031642","Q4G075","NM_001031642","Rn.103402","connective tissue| dorsal root ganglion| eye| pancreas| placenta| prostate| small intestine| thymus| adult","NM_001031642","GO:0010951","negative regulation of endopeptidase activity","not recorded","NM_001031642","GO:0005615","extracellular space","not recorded","NM_001031642","GO:0004867","serine-type endopeptidase inhibitor activity","not recorded",{"$nulls":3},"ENSRNOT00000059854","Pfam","IPR023796","Serpin domain","Coding",10.53,10.07,10.44,5.45,5.72,5.13]
["TC0500000129.rn.1",12.46,7.1,41.07,"up",1.02905207188278e-6,7.60666533645778e-5,"Lyn","v-yes-1 Yamaguchi sarcoma viral related oncogene homolog","chr5","+","NM_001111098","coding",16526053,16642652,180,"5q12",81515,"NM_001111098","RefSeq","Rattus norvegicus v-yes-1 Yamaguchi sarcoma viral related oncogene homolog (Lyn), transcript variant 2, mRNA.","chr5",100,100,"NM_001111098","Q07014","NM_001111098","Rn.4338","brain| heart| liver| lung| ovary| pancreas| placenta| prostate| spleen|tailbud embryo| juvenile| adult",{"$nulls":4},"NM_001111098","GO:0005623","cell","not recorded","NM_001111098","GO:0004672","protein kinase activity","not recorded",{"$nulls":3},"ENSRNOT00000011130","Pfam","IPR000719","Protein kinase domain","Coding",12.32,12.24,12.83,6.94,7.4,6.97]
["TC1200001002.rn.1",11.42,6.65,27.284,"up",1.03684079591064e-6,7.63176333295073e-5,"Alox5ap","arachidonate 5-lipoxygenase activating protein","chr12","-","NM_017260","coding",6854922,6879116,50,"12p11",29624,"NM_017260","RefSeq","Rattus norvegicus arachidonate 5-lipoxygenase activating protein (Alox5ap), mRNA.","chr12",100,100,"NM_017260","P20291","NM_017260","Rn.18399","connective tissue| heart| kidney| ovary| juvenile| adult","NM_017260","GO:0002540","leukotriene production involved in inflammatory response","inferred from electronic annotation","NM_017260","GO:0005634","nucleus","not recorded","NM_017260","GO:0004051","arachidonate 5-lipoxygenase activity","inferred from direct assay","NM_017260","GenMAPP","Eicosanoid_Synthesis","ENSRNOT00000001207","Pfam","IPR001129","Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein","Coding",11.56,11.13,11.56,7.14,6.57,6.24]
["TC1200000204.rn.1",14.91,13.46,2.732,"up",1.04337011457394e-6,7.64741867521684e-5,"RGD1565131","similar to ribosomal protein L15","chr12","+","ENSRNOT00000038919","coding",12203611,12204546,50,"12p11",498143,"ENSRNOT00000038919","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:14262077:14262990:1 gene:ENSRNOG00000025212 gene_biotype:protein_coding transcript_biotype:protein_coding","chr12",100,100,"ENSRNOT00000038919","D3ZXA2",{"$nulls":3},"ENSRNOT00000038919","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000038919","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000038919","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000038919","Pfam","IPR000439","Ribosomal protein L15e","Coding",14.96,14.91,14.86,13.6,13.53,13.26]
["TC0200003698.rn.1",4.71,6.06,-2.549,"down",1.0596044828874e-6,7.70141818922051e-5,"Sertm1","serine-rich and transmembrane domain containing 1","chr2","-","NM_001109580","coding",144303697,144323321,70,"2q26",690333,"NM_001109580","RefSeq","Rattus norvegicus serine-rich and transmembrane domain containing 1 (Sertm1), mRNA.","chr2",100,100,"NM_001109580","D3ZR22","NM_001109580","Rn.46844","adult",{"$nulls":19},"Coding",4.75,4.56,4.82,6.08,5.93,6.18]
["TC0700001177.rn.1",8.97,11.11,-4.408,"down",1.06647336616997e-6,7.71904535155773e-5,"Sqle","squalene epoxidase","chr7","+","NM_017136","coding",99609021,99626083,170,"7q33",29230,"NM_017136","RefSeq","Rattus norvegicus squalene epoxidase (Sqle), mRNA.","chr7",100,100,"NM_017136","P52020","NM_017136","Rn.33239","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pancreas| placenta| prostate| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_017136","GO:0006725","cellular aromatic compound metabolic process","inferred from direct assay","NM_017136","GO:0005789","endoplasmic reticulum membrane","inferred from electronic annotation","NM_017136","GO:0004506","squalene monooxygenase activity","inferred from direct assay","NM_017136","GenMAPP","Cholesterol_Biosynthesis","ENSRNOT00000012883","Pfam","IPR002938","Monooxygenase, FAD-binding","Coding",8.95,8.96,9.01,11.19,11.21,10.92]
["TC0X00002354.rn.1",7.85,9.02,-2.25,"down",1.09124455040561e-6,7.83306160541151e-5,"6-Sep","septin 6","chrX","-","NM_001173429","coding",123524951,123601109,210,"Xq12",691335,"NM_001173429","RefSeq","Rattus norvegicus septin 6 (Sept6), mRNA.","chrX",100,100,"NM_001173429","B5DFG5","NM_001173429","Rn.48945","brain| colon| dorsal root ganglion| embryonic tissue| eye| lung| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001173429","GO:0007049","cell cycle","inferred from electronic annotation","NM_001173429","GO:0008021","synaptic vesicle","inferred from electronic annotation","NM_001173429","GO:0005525","GTP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000067942","Pfam","IPR000038","Cell division protein GTP binding","Coding",7.98,7.7,7.86,8.93,9.05,9.08]
["TC2000000130.rn.1",11.32,5.27,66.257,"up",1.10831935652625e-6,7.92288705441049e-5,"LOC100909630","RT1 class II, locus DMb","chr20","+","ENSRNOT00000075342","coding",3945597,3952839,70,"20p12",294273,"ENSRNOT00000075342","ENSEMBL","ensembl:known chromosome:Rnor_5.0:20:6025149:6032385:1 gene:ENSRNOG00000049491 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000075342","Q6MGA7","ENSRNOT00000075342","Rn.5892","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| placenta| small intestine| spleen| thymus| juvenile| adult","ENSRNOT00000075342","GO:0002399","MHC class II protein complex assembly","not recorded","ENSRNOT00000075342","GO:0042613","MHC class II protein complex","not recorded","ENSRNOT00000075342","GO:0023026","MHC class II protein complex binding","not recorded",{"$nulls":3},"ENSRNOT00000075342","Pfam","IPR000353","MHC class II, beta chain, N-terminal","Coding",11.27,10.8,11.89,5.53,5.52,4.75]
["TC0100000915.rn.1",13.5,11.01,5.618,"up",1.11354417386397e-6,7.92292340274932e-5,"LOC100364427","ribosomal protein S12-like","chr1","+","ENSRNOT00000075079","coding",77820656,77821157,30,null,100364427,"ENSRNOT00000075079","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:79085336:79085837:1 gene:ENSRNOG00000048564 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000075079","M0R9I8","ENSRNOT00000075079","Rn.225868",null,"ENSRNOT00000075079","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000075079","GO:0022627","cytosolic small ribosomal subunit","inferred from electronic annotation","ENSRNOT00000075079","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000075079","Pfam","IPR004038","Ribosomal protein L7Ae/L30e/S12e/Gadd45","Coding",13.55,13.27,13.69,11.24,11.01,10.77]
["TC0100006841.rn.1",11.08,5.28,55.715,"up",1.13498506558118e-6,8.0003143025531e-5,"Mki67","marker of proliferation Ki-67","chr1","-","NM_001271366","coding",207992973,208020536,343,"1q41",291234,"NM_001271366","RefSeq","Rattus norvegicus marker of proliferation Ki-67 (Mki67), mRNA.","chr1",100,100,"ENSRNOT00000038176","D4A0Y6","NM_001271366","Rn.233802","colon| connective tissue| embryonic tissue| heart| kidney| liver| lung| ovary| prostate| small intestine| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001271366","GO:0006259","DNA metabolic process","inferred from expression pattern","NM_001271366","GO:0000775","chromosome, centromeric region","inferred from electronic annotation","NM_001271366","GO:0008022","protein C-terminus binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000038176","Pfam","IPR000253","Forkhead-associated (FHA) domain","Coding",11.53,10.74,10.98,5.24,5.38,5.22]
["TC0500001955.rn.1",11.84,6.43,42.518,"up",1.13757275501158e-6,8.0003143025531e-5,"Slc2a5","solute carrier family 2 (facilitated glucose/fructose transporter), member 5","chr5","+","NM_031741","coding",167142179,167174206,150,"5q36",65197,"NM_031741","RefSeq","Rattus norvegicus solute carrier family 2 (facilitated glucose/fructose transporter), member 5 (Slc2a5), mRNA.","chr5",100,100,"NM_031741","P43427","NM_031741","Rn.10900","brain| kidney| liver| prostate| small intestine| juvenile| adult","NM_031741","GO:0015755","fructose transport","inferred from direct assay","NM_031741","GO:0016020","membrane","inferred from direct assay","NM_031741","GO:0005353","fructose transmembrane transporter activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000024054","Pfam","IPR005828","General substrate transporter","Coding",12.02,11.1,12.4,6.27,6.64,6.39]
["TC0400000308.rn.1",13.46,6.86,97.006,"up",1.14749120821896e-6,8.03752813627885e-5,"Col1a2","collagen, type I, alpha 2","chr4","+","NM_053356","coding",29529494,29565310,585,"4q13",84352,"NM_053356","RefSeq","Rattus norvegicus collagen, type I, alpha 2 (Col1a2), mRNA.","chr4",100,100,"NM_053356","P02466","NM_053356","Rn.107239","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_053356","GO:0001501","skeletal system development","inferred from electronic annotation","NM_053356","GO:0005576","extracellular region","traceable author statement","NM_053356","GO:0005201","extracellular matrix structural constituent","inferred from electronic annotation","NM_053356","GenMAPP","Inflammatory_Response_Pathway",{"$nulls":4},"Coding",13.22,13.57,13.58,6.85,6.86,6.87]
["TC0500001031.rn.1",9.84,8.27,2.969,"up",1.15669216901676e-6,8.04602068574043e-5,"LOC100362298","ribosomal protein S18-like","chr5","+","ENSRNOT00000048495","coding",117509327,117509860,30,null,100362298,"ENSRNOT00000048495","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:5:121448708:121449172:1 gene:ENSRNOG00000030107 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000048495","D3ZM33",{"$nulls":3},"ENSRNOT00000048495","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000048495","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000048495","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000048495","Pfam","IPR001892","Ribosomal protein S13","Coding",9.82,9.94,9.77,8.26,8.22,8.34]
["TC0800000568.rn.1",11.09,10.04,2.071,"up",1.16115010532995e-6,8.04602068574043e-5,"Rps25","ribosomal protein s25","chr8","+","NM_001005528","coding",48726440,48730174,80,"8q22",122799,"NM_001005528","RefSeq","Rattus norvegicus ribosomal protein s25 (Rps25), mRNA.","chr8",100,100,"NM_001005528","P62853","NM_001005528","Rn.60855","adrenal gland| connective tissue| eye| kidney| liver| lung| pancreas| pituitary gland| small intestine| juvenile| adult","NM_001005528","GO:0000028","ribosomal small subunit assembly","inferred from mutant phenotype","NM_001005528","GO:0005634","nucleus","not recorded","NM_001005528","GO:0003735","structural constituent of ribosome","inferred from mutant phenotype",{"$nulls":3},"ENSRNOT00000029546","Pfam","IPR004977","Ribosomal protein S25","Coding",11.16,11.05,11.06,10.03,10.09,10]
["TC0400000332.rn.1",13.83,7,113.772,"up",1.16577796239691e-6,8.04602068574043e-5,"Col1a2","collagen, type I, alpha 2 (Col1a2), mRNA","chr4","+","NM_053356_2","coding",31534225,31569152,515,null,"NA","NM_053356_2","RefSeq","collagen, type I, alpha 2 (Col1a2), mRNA","chr4",100,100,"ENSRNOT00000016423","F1LS40","ENSRNOT00000016423","Rn.107239","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000016423","GO:0001501","skeletal system development","inferred from electronic annotation","ENSRNOT00000016423","GO:0005576","extracellular region","traceable author statement","ENSRNOT00000016423","GO:0005201","extracellular matrix structural constituent","inferred from electronic annotation","ENSRNOT00000016423","GenMAPP","Inflammatory_Response_Pathway","ENSRNOT00000016423","Pfam","IPR000885","Fibrillar collagen, C-terminal","Coding",13.6,13.92,13.97,6.97,6.92,7.1]
["TC0400001881.rn.1",9.7,4.52,36.252,"up",1.16723113971941e-6,8.04602068574043e-5,"Clec12a","C-type lectin domain family 12, member A","chr4","+","NM_001134716","coding",163112100,163130979,70,null,680338,"NM_001134716","RefSeq","Rattus norvegicus C-type lectin domain family 12, member A (Clec12a), mRNA.","chr4",100,100,"NM_001134716","B4F798","NM_001134716","Rn.158811","lung| juvenile",{"$nulls":8},"NM_001134716","GO:0030246","carbohydrate binding","inferred from electronic annotation",{"$nulls":7},"Coding",9.8,9.84,9.47,4.27,4.54,4.75]
["TC1500000958.rn.1",13.5,11.79,3.272,"up",1.17723700544989e-6,8.05756966677063e-5,"LOC498555","similar to 60S acidic ribosomal protein P2","chr15","+","ENSRNOT00000057931","coding",75067282,75067743,30,"15q21",498555,"ENSRNOT00000057931","ENSEMBL","ensembl:known chromosome:Rnor_5.0:15:78627976:78628409:1 gene:ENSRNOG00000038074 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000057931","D4A4D5","ENSRNOT00000057931","Rn.226833",null,"ENSRNOT00000057931","GO:0006414","translational elongation","inferred from electronic annotation","ENSRNOT00000057931","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000057931","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000057931","Pfam","IPR001813","Ribosomal protein L10/L12","Coding",13.59,13.45,13.47,11.73,11.93,11.7]
["TC2000000132.rn.1",9.96,5.7,19.16,"up",1.17818357916052e-6,8.05756966677063e-5,"Psmb8","proteasome (prosome, macropain) subunit, beta type, 8","chr20","+","NM_080767","coding",3990807,3993772,60,"20p12",24968,"NM_080767","RefSeq","Rattus norvegicus proteasome (prosome, macropain) subunit, beta type, 8 (Psmb8), mRNA.","chr20",100,100,"NM_080767","P28064","NM_080767","Rn.203098","adipose tissue| adrenal gland| brain| connective tissue| eye| liver| lung| ovary| pancreas| placenta| prostate| small intestine| spleen| thymus| fetus| juvenile| adult","NM_080767","GO:0019882","antigen processing and presentation","not recorded","NM_080767","GO:0005634","nucleus","inferred from electronic annotation","NM_080767","GO:0004298","threonine-type endopeptidase activity","inferred from electronic annotation","NM_080767","GenMAPP","Proteasome_Degradation","ENSRNOT00000000528","Pfam","IPR001353","Proteasome, subunit alpha/beta","Coding",9.96,9.34,10.57,5.87,5.84,5.38]
["TC1100000992.rn.1",6.2,8.61,-5.315,"down",1.19043534063133e-6,8.10943227533601e-5,"Zdhhc8","zinc finger, DHHC-type containing 8","chr11","+","NM_001039021","coding",86903114,86917261,140,"11q23",303796,"NM_001039021","RefSeq","Rattus norvegicus zinc finger, DHHC-type containing 8 (Zdhhc8), mRNA.","chr11",100,100,"NM_001039021","Q2THW6","NM_001039021","Rn.17261","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| heart| lung| nerve| pancreas| placenta| prostate| fetus| juvenile| adult","NM_001039021","GO:0007626","locomotory behavior","inferred from electronic annotation","NM_001039021","GO:0005739","mitochondrion","inferred from electronic annotation","NM_001039021","GO:0008270","zinc ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000048063","Pfam","IPR001594","Zinc finger, DHHC-type, palmitoyltransferase","Coding",5.99,6.11,6.49,8.46,8.87,8.51]
["TC1400000935.rn.1",9.57,8.08,2.809,"up",1.19951025531757e-6,8.13933306450059e-5,"Dbnl","drebrin-like","chr14","+","NM_001277211","coding",86029335,86046314,222,"14q21",83527,"NM_001277211","RefSeq","Rattus norvegicus drebrin-like (Dbnl), transcript variant 1, mRNA.","chr14",100,100,"NM_001277211","Q9JHL4","NM_001277211","Rn.4115","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001277211","GO:0002376","immune system process","inferred from electronic annotation","NM_001277211","GO:0000139","Golgi membrane","inferred from electronic annotation","NM_001277211","GO:0003779","actin binding","not recorded",{"$nulls":3},"ENSRNOT00000017375","Pfam","IPR001452","SH3 domain","Coding",9.54,9.47,9.71,8.06,8.17,8.01]
["TC0100006481.rn.1",14.28,12.02,4.79,"up",1.20457874953044e-6,8.14192118991956e-5,"LOC100912427","Y box binding protein 1","chr1","-","ENSRNOT00000058700","coding",186640422,186641503,30,"5q36",500538,"ENSRNOT00000058700","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:193602583:193603551:-1 gene:ENSRNOG00000030807 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000058700","F1LPL7","ENSRNOT00000058700","Rn.110976","adrenal gland| brain| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","ENSRNOT00000058700","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from direct assay","ENSRNOT00000058700","GO:0005576","extracellular region","inferred from electronic annotation","ENSRNOT00000058700","GO:0002039","p53 binding","inferred from mutant phenotype",{"$nulls":3},"ENSRNOT00000058700","Pfam","IPR002059","Cold-shock protein, DNA-binding","Coding",14.32,14.11,14.4,12.38,11.82,11.86]
["TC0700003879.rn.1",10.8,6.87,15.242,"up",1.21935878013244e-6,8.17817813501182e-5,"Fmnl3","formin-like 3","chr7","-","ENSRNOT00000031996","coding",140981801,141033299,300,null,300225,"ENSRNOT00000031996","ENSEMBL","ensembl:known chromosome:Rnor_5.0:X:115486806:115536581:-1 gene:ENSRNOG00000021503 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000031996","D3ZDN1","ENSRNOT00000031996","Rn.234252","prostate| adult","ENSRNOT00000031996","GO:0007010","cytoskeleton organization","not recorded","ENSRNOT00000031996","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000031996","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000031996","Pfam","IPR010472","Formin, FH3 domain","Coding",10.69,10.6,11.11,6.99,6.97,6.65]
["TC0100002629.rn.1",10.5,4.79,52.346,"up",1.22455492783785e-6,8.1814398659505e-5,"Itgal","integrin, alpha L","chr1","+","NM_001033998","coding",198744103,198781747,340,"1q36",308995,"NM_001033998","RefSeq","Rattus norvegicus integrin, alpha L (Itgal), mRNA.","chr1",100,100,"NM_001033998","F1LP44","NM_001033998","Rn.14655","kidney| lung| pancreas| prostate| small intestine| spleen| thymus| juvenile| adult","NM_001033998","GO:0002291","T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","inferred from electronic annotation","NM_001033998","GO:0001772","immunological synapse","inferred from electronic annotation","NM_001033998","GO:0032403","protein complex binding","inferred from physical interaction","NM_001033998","GenMAPP","Integrin-mediated_cell_adhesion_KEGG","ENSRNOT00000024404","Pfam","IPR002035","von Willebrand factor, type A","Coding",10.53,10.33,10.63,4.78,4.76,4.84]
["TC0100004809.rn.1",13.32,4.46,464.65,"up",1.25267328361446e-6,8.25601017238353e-5,"Lilrb4","leukocyte immunoglobulin-like receptor, subfamily B, member 4","chr1","-","NM_001013894","coding",73393937,73399428,160,"1q12",292594,"NM_001013894","RefSeq","Rattus norvegicus leukocyte immunoglobulin-like receptor, subfamily B, member 4 (Lilrb4), mRNA.","chr1",100,100,"NM_001013894","Q67EV2","NM_001013894","Rn.24628","connective tissue| kidney| lung| ovary| placenta| adult","NM_001013894","GO:0045671","negative regulation of osteoclast differentiation","not recorded","NM_001013894","GO:0070062","extracellular vesicular exosome","not recorded","ENSRNOT00000038898","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",14.02,13.15,12.8,4.61,4.39,4.39]
["TC1000003563.rn.1",11.16,9.64,2.868,"up",1.25472723821844e-6,8.25601017238353e-5,"Rps24","ribosomal protein S24","chr10","-","ENSRNOT00000043005","coding",78992512,78993051,30,"16p16",81776,"ENSRNOT00000043005","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:78838574:78838975:-1 gene:ENSRNOG00000031579 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000043005","D4ACJ1","ENSRNOT00000043005","Rn.979","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pancreas| pituitary gland| placenta| prostate| spleen| testis| vibrissa|tailbud embryo| metamorphosing embryo| juvenile| adult","ENSRNOT00000043005","GO:0000462","maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)","not recorded","ENSRNOT00000043005","GO:0005634","nucleus","not recorded","ENSRNOT00000043005","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000043005","Pfam","IPR001976","Ribosomal protein S24e","Coding",11.11,11.07,11.3,9.87,9.52,9.53]
["TC0300003171.rn.1",12.97,9.52,10.928,"up",1.26457201887131e-6,8.2893888829485e-5,"Cd302","CD302 molecule","chr3","-","NM_001013916","coding",46327382,46361092,63,"3q21",295629,"NM_001013916","RefSeq","Rattus norvegicus CD302 molecule (Cd302), mRNA.","chr3",100,100,"NM_001013916","Q5FVR3","NM_001013916","Rn.98436","brain| connective tissue| dorsal root ganglion| kidney| liver| lung| muscle| placenta| juvenile| adult","NM_001013916","GO:0006909","phagocytosis","inferred from electronic annotation","NM_001013916","GO:0005902","microvillus","inferred from electronic annotation","NM_001013916","GO:0030246","carbohydrate binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008987","Pfam","IPR001304","C-type lectin","Coding",13.15,12.93,12.83,9.4,9.64,9.51]
["TC1000000617.rn.1",16.13,12.16,15.671,"up",1.29953145885815e-6,8.44346000214683e-5,"Gm2a","GM2 ganglioside activator","chr10","+","NM_172335","coding",40438275,40450927,50,"10q22",282838,"NM_172335","RefSeq","Rattus norvegicus GM2 ganglioside activator (Gm2a), mRNA.","chr10",100,100,"NM_172335","Q6IN37","NM_172335","Rn.98783","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pineal gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| fetus| juvenile| adult","NM_172335","GO:0001573","ganglioside metabolic process","inferred from direct assay","NM_172335","GO:0005730","nucleolus","inferred from electronic annotation","NM_172335","GO:0004563","beta-N-acetylhexosaminidase activity","not recorded",{"$nulls":7},"Coding",16.43,15.83,16.13,12.38,12.42,11.67]
["TC1600002017.rn.1",15.84,14.25,3.01,"up",1.30265803959205e-6,8.44346000214683e-5,"Lamp1","lysosomal-associated membrane protein 1","chr16","-","NM_012857","coding",81689335,81714341,154,"16q12.5",25328,"NM_012857","RefSeq","Rattus norvegicus lysosomal-associated membrane protein 1 (Lamp1), mRNA.","chr16",100,100,"NM_012857","P14562","NM_012857","Rn.40177","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| fetus| juvenile| adult","NM_012857","GO:0006914","autophagy","inferred from expression pattern","NM_012857","GO:0005737","cytoplasm","not recorded","NM_012857","GO:0019899","enzyme binding","not recorded",{"$nulls":3},"ENSRNOT00000026580","Pfam","IPR002000","Lysosome-associated membrane glycoprotein","Coding",15.92,15.76,15.83,14.18,14.51,14.07]
["TC1200001771.rn.1",11.55,8.78,6.821,"up",1.3359969574117e-6,8.57941647962663e-5,"Ankrd13a","ankyrin repeat domain 13a","chr12","-","NM_001012148","coding",47558471,47588872,228,"12q16",360823,"NM_001012148","RefSeq","Rattus norvegicus ankyrin repeat domain 13a (Ankrd13a), mRNA.","chr12",100,100,"NM_001012148","Q5U313","NM_001012148","Rn.3722","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_001012148","GO:0005886","plasma membrane","not recorded","ENSRNOT00000001595","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000001595","Pfam","IPR002110","Ankyrin repeat","Coding",11.52,11.44,11.7,8.86,8.88,8.59]
["TC0500003796.rn.1",12.86,10.81,4.141,"up",1.3360842285809e-6,8.57941647962663e-5,"Hmgn2","high mobility group nucleosome binding domain 2","chr5","-","NM_001025624","coding",152195359,152198813,107,"5q36",114637,"NM_001025624","RefSeq","Rattus norvegicus high mobility group nucleosome binding domain 2 (Hmgn2), mRNA.","chr5",100,100,"NM_001025624","Q4KLJ0","NM_001025624","Rn.3517","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| prostate| small intestine| spleen| thymus| metamorphosing embryo| juvenile| adult","NM_001025624","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","not recorded","NM_001025624","GO:0000785","chromatin","inferred from electronic annotation","NM_001025624","GO:0031492","nucleosomal DNA binding","inferred from electronic annotation",{"$nulls":7},"Coding",13.11,12.73,12.73,10.83,10.84,10.75]
["TC0100001605.rn.1",12.88,10.75,4.377,"up",1.34341027486749e-6,8.57941647962663e-5,"Cyfip1","cytoplasmic FMR1 interacting protein 1","chr1","+","NM_001107517","coding",114258607,114348506,404,"1q22",308666,"NM_001107517","RefSeq","Rattus norvegicus cytoplasmic FMR1 interacting protein 1 (Cyfip1), mRNA.","chr1",100,100,"NM_001107517","D4A8H8","NM_001107517","Rn.143776","adipose tissue| brain| colon| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| placenta| prostate|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001107517","GO:0016601","Rac protein signal transduction","not recorded","NM_001107517","GO:0005845","mRNA cap binding complex","inferred from electronic annotation","NM_001107517","GO:0032403","protein complex binding","not recorded",{"$nulls":3},"ENSRNOT00000016376","Pfam","IPR008081","Cytoplasmic FMR1-interacting","Coding",12.77,12.77,13.09,10.76,10.77,10.72]
["TC0200004389.rn.1",12.23,9.08,8.877,"up",1.34904856141453e-6,8.57941647962663e-5,"Cttnbp2nl","CTTNBP2 N-terminal like","chr2","-","NM_001107712","coding",207495056,207541660,60,"2q34",310760,"NM_001107712","RefSeq","Rattus norvegicus CTTNBP2 N-terminal like (Cttnbp2nl), mRNA.","chr2",100,100,"NM_001107712","D4A8X8","NM_001107712","Rn.25049","adipose tissue| brain| connective tissue| eye| kidney| lung| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_001107712","GO:0015629","actin cytoskeleton","inferred from electronic annotation","ENSRNOT00000019680","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019680","Pfam","IPR019131","Cortactin-binding protein-2, N-terminal","Coding",11.97,12.26,12.47,8.89,9.3,9.04]
["TC0800003046.rn.1",10.36,6.88,11.158,"up",1.35558849897439e-6,8.57941647962663e-5,"Fam46a","family with sequence similarity 46, member A","chr8","-","NM_001106844","coding",92935474,92942226,80,"8q31",300870,"NM_001106844","RefSeq","Rattus norvegicus family with sequence similarity 46, member A (Fam46a), mRNA.","chr8",100,100,"NM_001106844","D3ZH34","NM_001106844","Rn.788","adipose tissue| colon| connective tissue| heart| liver| pituitary gland| placenta| prostate| spleen| fetus| adult","NM_001106844","GO:0010468","regulation of gene expression","not recorded",{"$nulls":4},"NM_001106844","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":3},"ENSRNOT00000056937","Pfam","IPR012937","Domain of unknown function DUF1693","Coding",10.34,10.36,10.37,6.97,6.93,6.75]
["TC0200004459.rn.1",12.03,9.69,5.063,"up",1.3602639269101e-6,8.57941647962663e-5,"Gnai3","guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3","chr2","-","NM_013106","coding",210896650,210934869,120,"2q34",25643,"NM_013106","RefSeq","Rattus norvegicus guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 (Gnai3), mRNA.","chr2",100,100,"NM_013106","P08753","NM_013106","Rn.4368","adipose tissue| brain| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_013106","GO:0006184","GTP catabolic process","inferred from electronic annotation","NM_013106","GO:0000139","Golgi membrane","traceable author statement","NM_013106","GO:0003924","GTPase activity","not recorded","NM_013106","GenMAPP","G_Protein_Signaling","ENSRNOT00000026710","Pfam","IPR001019","Guanine nucleotide binding protein (G-protein), alpha subunit","Coding",12.13,11.99,11.97,9.73,9.75,9.59]
["TC1300000720.rn.1",9.91,4.59,39.947,"up",1.36264449589921e-6,8.57941647962663e-5,"LOC100910879","SH2 domain-containing protein 1B-like","chr13","+","mRNARGD6496005_1","coding",87436561,87444062,30,null,"NA","mRNARGD6496005_1","Rat Genome Database","SH2 domain-containing protein 1B-like","chr13",100,100,{"$nulls":24},"Coding",9.93,9.72,10.07,4.09,4.84,4.83]
["TC0700002698.rn.1",11,5.51,44.942,"up",1.36808379762626e-6,8.57941647962663e-5,"Glipr1","GLI pathogenesis-related 1","chr7","-","NM_001011987","coding",54767828,54778843,63,"7q21",299783,"NM_001011987","RefSeq","Rattus norvegicus GLI pathogenesis-related 1 (Glipr1), mRNA.","chr7",100,100,"NM_001011987","Q5FVN7","NM_001011987","Rn.65764","connective tissue| dorsal root ganglion| kidney| liver| lung| placenta| prostate| spleen| thymus| juvenile| adult",{"$nulls":4},"NM_001011987","GO:0005576","extracellular region","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000005399","Pfam","IPR014044","CAP domain","Coding",11.26,10.52,11.23,5.71,5.48,5.35]
["TSUnmapped00000121.rn.1",13.13,11.49,3.117,"up",1.37411056758531e-6,8.58621390990087e-5,"Rpl10a","ribosomal protein L10A",null,null,"NM_031065","coding","NA","NA",30,"20p12",81729,"NM_031065","RefSeq","Rattus norvegicus ribosomal protein L10A (Rpl10a), mRNA.",null,100,100,"NM_031065","P62907","NM_031065","Rn.2262","adipose tissue| adrenal gland| dorsal root ganglion| eye| liver| lung| muscle| pancreas| prostate| spleen| testis| thymus| vibrissa| adult","NM_031065","GO:0006412","translation","inferred from electronic annotation","NM_031065","GO:0005634","nucleus","not recorded","NM_031065","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":7},"Coding",13.24,12.89,13.26,11.44,11.62,11.41]
["TC0100001998.rn.1",14.95,13.82,2.189,"up",1.37919375559284e-6,8.58708771627356e-5,"Picalm","phosphatidylinositol binding clathrin assembly protein","chr1","+","NM_053554","coding",154377120,154460223,378,"1q32",89816,"NM_053554","RefSeq","Rattus norvegicus phosphatidylinositol binding clathrin assembly protein (Picalm), mRNA.","chr1",100,100,"NM_053554","O55012","NM_053554","Rn.24871","adrenal gland| brain| colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_053554","GO:0006898","receptor-mediated endocytosis","not recorded","NM_053554","GO:0005622","intracellular","not recorded","NM_053554","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000025415","Pfam","IPR001026","Epsin domain, N-terminal","Coding",14.91,14.91,15.03,13.79,13.88,13.8]
["TC0400003691.rn.1",11.86,4.44,171.255,"up",1.38571203556741e-6,8.5968584892291e-5,"Apobec1","apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1","chr4","-","NM_012907","coding",155386278,155412999,94,"4q42",25383,"NM_012907","RefSeq","Rattus norvegicus apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 (Apobec1), mRNA.","chr4",100,100,"NM_012907","P38483","NM_012907","Rn.10002","brain| dorsal root ganglion| lung| ovary| adult","NM_012907","GO:0006397","mRNA processing","inferred from electronic annotation","NM_012907","GO:0005634","nucleus","inferred from direct assay","NM_012907","GO:0003723","RNA binding","non-traceable author statement",{"$nulls":3},"ENSRNOT00000020735","Pfam","IPR007904","APOBEC-like, C-terminal","Coding",11.99,12.09,11.49,4.33,4.51,4.47]
["TSUnmapped00000087.rn.1",12.45,8.75,12.996,"up",1.39430843068444e-6,8.61940631651936e-5,"Zfp36l2","zinc finger protein 36, C3H type-like 2",null,null,"NM_001036626","coding","NA","NA",30,"6q12",298765,"NM_001036626","RefSeq","Rattus norvegicus zinc finger protein 36, C3H type-like 2 (Zfp36l2), mRNA.",null,100,100,"NM_001036626","D3ZHK9","NM_001036626","Rn.22055","adipose tissue| brain| colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| nerve| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001036626","GO:0000288","nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay","not recorded","NM_001036626","GO:0005634","nucleus","not recorded","NM_001036626","GO:0017091","AU-rich element binding","not recorded",{"$nulls":7},"Coding",12.23,12.3,12.83,8.92,8.8,8.52]
["TC0500003068.rn.1",12.46,6.18,77.708,"up",1.43244757936926e-6,8.81058943930859e-5,"Plin2","perilipin 2","chr5","-","NM_001007144","coding",104984413,105010867,120,"5q32",298199,"NM_001007144","RefSeq","Rattus norvegicus perilipin 2 (Plin2), mRNA.","chr5",100,100,"NM_001007144","Q5U2U5","NM_001007144","Rn.101967","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| muscle| ovary| pituitary gland| placenta| prostate| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_001007144","GO:0014070","response to organic cyclic compound","inferred from expression pattern","NM_001007144","GO:0005634","nucleus","inferred from electronic annotation","NM_001007144","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000009749","Pfam","IPR004279","Perilipin","Coding",12.69,12.27,12.41,6.31,6.45,5.78]
["TC1000004275.rn.1",13.94,10.87,8.398,"up",1.43537897146067e-6,8.81058943930859e-5,"P4hb","prolyl 4-hydroxylase, beta polypeptide","chr10","-","NM_012998","coding",109736460,109749131,190,"10q32.3",25506,"NM_012998","RefSeq","Rattus norvegicus prolyl 4-hydroxylase, beta polypeptide (P4hb), mRNA.","chr10",100,100,"NM_012998","P04785","NM_012998","Rn.4234","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_012998","GO:0006457","protein folding","inferred from electronic annotation","NM_012998","GO:0005783","endoplasmic reticulum","not recorded","NM_012998","GO:0003756","protein disulfide isomerase activity","inferred from mutant phenotype",{"$nulls":3},"ENSRNOT00000054958","Pfam","IPR013766","Thioredoxin domain","Coding",14.09,13.81,13.93,11.02,10.88,10.7]
["TC0800001540.rn.1",14.82,10.18,24.933,"up",1.4454760034158e-6,8.84132523075206e-5,"Gpx1","glutathione peroxidase 1","chr8","+","NM_030826","coding",117117430,117118528,28,null,24404,"NM_030826","RefSeq","Rattus norvegicus glutathione peroxidase 1 (Gpx1), mRNA.","chr8",100,100,"NM_030826","Q6PDW8","NM_030826","Rn.11323","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pituitary gland| placenta| prostate| small intestine| vibrissa| metamorphosing embryo| juvenile| adult","NM_030826","GO:0000302","response to reactive oxygen species","not recorded","NM_030826","GO:0005634","nucleus","inferred from direct assay","NM_030826","GO:0004602","glutathione peroxidase activity","inferred from direct assay","NM_030826","GenMAPP","Oxidative_Stress","ENSRNOT00000073247","Pfam","IPR000889","Glutathione peroxidase","Coding",15.35,14.51,14.61,10.26,10.38,9.89]
["TC0900002324.rn.1",12.18,9.94,4.724,"up",1.46850769406149e-6,8.95068321176917e-5,"Dock10","ENCODES a protein that exhibits Rho GTPase binding (ortholog) AND  Rho guanyl-nucleotide exchange factor activity (ortholog) AND  INVOLVED IN positive regulation of Rho GTPase activity (ortholog) AND  regulation of cell migration (ortholog) AND  FOUND IN extracellular vesicular exosome (ortholog) AND  membrane (ortholog) AND  INTERACTS WITH dibutyl phthalate AND  (-)-epigallocatechin 3-gallate (ortholog) AND  17alpha-ethynylestradiol (ortholog)","chr9","-","mRNARGD7642087_1","coding",86312472,86516474,686,null,"NA","mRNARGD7642087_1","Rat Genome Database","ENCODES a protein that exhibits Rho GTPase binding (ortholog) AND  Rho guanyl-nucleotide exchange factor activity (ortholog) AND  INVOLVED IN positive regulation of Rho GTPase activity (ortholog) AND  regulation of cell migration (ortholog) AND  FOUND IN extracellular vesicular exosome (ortholog) AND  membrane (ortholog) AND  INTERACTS WITH dibutyl phthalate AND  (-)-epigallocatechin 3-gallate (ortholog) AND  17alpha-ethynylestradiol (ortholog)","chr9",100,100,{"$nulls":24},"Coding",12.13,12.07,12.35,9.88,10.17,9.77]
["TC1300001957.rn.1",11.17,6.31,29.041,"up",1.50469059350738e-6,9.11617342767884e-5,"Fcgr2a","Fc fragment of IgG, low affinity IIa, receptor","chr13","-","NM_053843","coding",91146873,91163903,127,"13q24",116591,"NM_053843","RefSeq","Rattus norvegicus Fc fragment of IgG, low affinity IIa, receptor (Fcgr2a), mRNA.","chr13",100,100,"NM_053843","P27645","NM_053843","Rn.6050","connective tissue| dorsal root ganglion| eye| liver| lung| ovary| placenta| spleen| juvenile| adult","NM_053843","GO:0001788","antibody-dependent cellular cytotoxicity","not recorded","NM_053843","GO:0005623","cell","not recorded","NM_053843","GO:0019770","IgG receptor activity","inferred from direct assay",{"$nulls":7},"Coding",11.41,11.05,11.06,7.04,6.07,5.81]
["TC1400001003.rn.1",8.38,4.84,11.632,"up",1.50696577672504e-6,9.11617342767884e-5,"Ikzf1","IKAROS family zinc finger 1","chr14","+","NM_001107237","coding",91782354,91869879,157,"14q21",305501,"NM_001107237","RefSeq","Rattus norvegicus IKAROS family zinc finger 1 (Ikzf1), mRNA.","chr14",100,100,"NM_001107237","D4A9W4","NM_001107237","Rn.218270","brain| prostate| thymus| juvenile| adult","NM_001107237","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_001107237","GO:0005634","nucleus","inferred from electronic annotation","NM_001107237","GO:0003677","DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000005902","Pfam","IPR007087","Zinc finger, C2H2","Coding",8.19,8.1,8.84,4.87,4.96,4.7]
["TC0200003763.rn.1",13.85,9.34,22.785,"up",1.51567326672504e-6,9.11617342767884e-5,"P2ry12","purinergic receptor P2Y, G-protein coupled, 12","chr2","-","NM_022800","coding",149440807,149482479,70,"2q31",64803,"NM_022800","RefSeq","Rattus norvegicus purinergic receptor P2Y, G-protein coupled, 12 (P2ry12), mRNA.","chr2",100,100,"NM_022800","Q9EPX4","NM_022800","Rn.64592","adrenal gland| liver","NM_022800","GO:0001973","adenosine receptor signaling pathway","inferred from mutant phenotype","NM_022800","GO:0005739","mitochondrion","inferred from direct assay","NM_022800","GO:0001609","G-protein coupled adenosine receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018600","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",13.76,13.47,14.33,9.79,9.3,8.94]
["TC0100005722.rn.1",16.51,14.48,4.084,"up",1.51665080916423e-6,9.11617342767884e-5,"LOC100361392","thymosin beta 10-like","chr1","-","mRNARGD2453345_1","coding",128872445,128872579,30,null,"NA","mRNARGD2453345_1","Rat Genome Database","thymosin beta 10-like","chr1",100,100,{"$nulls":24},"Coding",16.73,16.52,16.27,14.56,14.48,14.41]
["TC2000001112.rn.1",8.79,6.68,4.317,"up",1.54641004863444e-6,9.23116458928827e-5,"RT1-DMa","RT1 class II, locus DMa","chr20","-","ENSRNOT00000070886","coding",5240975,5261922,90,"20p12",294274,"ENSRNOT00000070886","ENSEMBL","ensembl:known chromosome:Rnor_5.0:20:7302037:7305439:-1 gene:ENSRNOG00000047864 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000070886","Q95574","ENSRNOT00000070886","Rn.35809","adipose tissue| brain| colon| connective tissue| embryonic tissue| eye| heart| lung| pancreas| placenta| prostate| spleen| thymus| juvenile| adult","ENSRNOT00000070886","GO:0002503","peptide antigen assembly with MHC class II protein complex","not recorded","ENSRNOT00000070886","GO:0005622","intracellular","not recorded","ENSRNOT00000070886","GO:0023026","MHC class II protein complex binding","not recorded",{"$nulls":3},"ENSRNOT00000070886","Pfam","IPR001003","MHC class II, alpha chain, N-terminal","Coding",8.83,8.62,8.92,6.68,6.65,6.72]
["TC0800002514.rn.1",11.34,10.19,2.219,"up",1.57635405626643e-6,9.28605848984032e-5,"LOC100151767","hypothetical LOC100151767","chr8","-","NM_001127503","coding",55038541,55050382,100,null,100151767,"NM_001127503","RefSeq","Rattus norvegicus hypothetical LOC100151767 (LOC100151767), mRNA.","chr8",100,100,"NM_001127503","B1WC13","NM_001127503","Rn.159880","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pituitary gland| prostate|tailbud embryo| metamorphosing embryo| juvenile| adult",{"$nulls":19},"Coding",11.39,11.29,11.34,10.18,10.3,10.09]
["TC0700001491.rn.1",11.07,9.66,2.657,"up",1.5769888057699e-6,9.28605848984032e-5,"Tmsb10","thymosin, beta 10","chr7","+","ENSRNOT00000055447","coding",122433024,122433233,30,"4q33",50665,"ENSRNOT00000055447","ENSEMBL","ensembl:known chromosome:Rnor_5.0:7:122416566:122416700:1 gene:ENSRNOG00000036921 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000055447","P63312","ENSRNOT00000055447","Rn.5983","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| lung| nerve| ovary| pancreas| prostate| spleen| metamorphosing embryo| adult","ENSRNOT00000055447","GO:0007286","spermatid development","traceable author statement","ENSRNOT00000055447","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000055447","GO:0003785","actin monomer binding","traceable author statement",{"$nulls":3},"ENSRNOT00000055447","Pfam","IPR001152","Thymosin beta-4","Coding",11.25,10.95,11.01,9.72,9.6,9.66]
["TC1400000368.rn.1",16.44,14.34,4.287,"up",1.58506604209538e-6,9.30208858690502e-5,"Igfbp7","insulin-like growth factor binding protein 7","chr14","+","NM_001013048","coding",33010015,33070193,70,"14p11",289560,"NM_001013048","RefSeq","Rattus norvegicus insulin-like growth factor binding protein 7 (Igfbp7), mRNA.","chr14",100,100,"NM_001013048","F1M9B2","NM_001013048","Rn.203012","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| vibrissa| fetus| juvenile| adult","NM_001013048","GO:0001558","regulation of cell growth","inferred from electronic annotation","NM_001013048","GO:0005615","extracellular space","inferred from direct assay","NM_001013048","GO:0005520","insulin-like growth factor binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002809","Pfam","IPR000867","Insulin-like growth factor-binding protein, IGFBP","Coding",16.47,16.43,16.41,14.39,14.43,14.21]
["TC0X00000281.rn.1",19.1,18.15,1.932,"up",1.63618233061546e-6,9.50883510148275e-5,"Tmsb4x","thymosin, beta 4, X chromosome","chrX","+","NM_031136","coding",28593394,28595396,30,null,81814,"NM_031136","RefSeq","Rattus norvegicus thymosin, beta 4, X chromosome (Tmsb4x), mRNA.","chrX",100,100,"NM_031136","P62329","NM_031136","Rn.2605","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_031136","GO:0001649","osteoblast differentiation","inferred from expression pattern","NM_031136","GO:0005634","nucleus","not recorded","NM_031136","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000071708","Pfam","IPR001152","Thymosin beta-4","Coding",19.09,19.05,19.15,18.17,18.25,18.04]
["TC1900001053.rn.1",11.1,5.3,55.715,"up",1.63671734231958e-6,9.50883510148275e-5,"Mmp2","matrix metallopeptidase 2","chr19","-","NM_031054","coding",15542771,15570589,213,"19p11",81686,"NM_031054","RefSeq","Rattus norvegicus matrix metallopeptidase 2 (Mmp2), mRNA.","chr19",100,100,"NM_031054","P33436","NM_031054","Rn.6422","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| heart| lung| muscle| ovary| placenta| prostate| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_031054","GO:0001525","angiogenesis","inferred from expression pattern","NM_031054","GO:0005578","proteinaceous extracellular matrix","inferred from electronic annotation","NM_031054","GO:0001968","fibronectin binding","inferred from physical interaction","NM_031054","GenMAPP","Matrix_Metalloproteinases","ENSRNOT00000022679","Pfam","IPR000562","Fibronectin, type II, collagen-binding","Coding",11.09,10.94,11.28,5.35,5.39,5.15]
["TC1500002487.rn.1",17.8,16.97,1.778,"up",1.67015707105181e-6,9.56987984677986e-5,"Itm2b","integral membrane protein 2B","chr15","-","NM_001006963","coding",55254703,55277748,66,"15p11",290364,"NM_001006963","RefSeq","Rattus norvegicus integral membrane protein 2B (Itm2b), mRNA.","chr15",100,100,"NM_001006963","Q5XIE8","NM_001006963","Rn.107335","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| juvenile| adult","NM_001006963","GO:0042985","negative regulation of amyloid precursor protein biosynthetic process","not recorded","NM_001006963","GO:0005615","extracellular space","not recorded","NM_001006963","GO:0001540","beta-amyloid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000023037","Pfam","IPR007084","BRICHOS domain","Coding",17.81,17.74,17.85,16.91,17.02,16.99]
["TC0100007686.rn.1",10.11,5.3,28.051,"up",1.67192991126645e-6,9.56987984677986e-5,"Blnk","B-cell linker","chr1","-","NM_001025767","coding",260187023,260254580,212,"1q54",499356,"NM_001025767","RefSeq","Rattus norvegicus B-cell linker (Blnk), mRNA.","chr1",100,100,"NM_001025767","Q4KM52","NM_001025767","Rn.32684","brain| kidney| lung| ovary| pituitary gland| prostate| small intestine| spleen| juvenile| adult","NM_001025767","GO:0009967","positive regulation of signal transduction","not recorded","NM_001025767","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001025767","GO:0005070","SH3/SH2 adaptor activity","not recorded",{"$nulls":3},"ENSRNOT00000019014","Pfam","IPR000980","SH2 domain","Coding",9.88,9.84,10.61,5.41,5.37,5.13]
["TC1900000347.rn.1",11.57,6.65,30.274,"up",1.68201892234944e-6,9.56987984677986e-5,"Dnase2","deoxyribonuclease II, lysosomal","chr19","+","NM_138539","coding",26022854,26025524,70,"19q11",171575,"NM_138539","RefSeq","Rattus norvegicus deoxyribonuclease II, lysosomal (Dnase2), mRNA.","chr19",100,100,"NM_138539","Q9QZK8","NM_138539","Rn.9509","connective tissue| dorsal root ganglion| liver| placenta| prostate| small intestine| spleen| adult","NM_138539","GO:0000737","DNA catabolic process, endonucleolytic","not recorded","NM_138539","GO:0005622","intracellular","not recorded","NM_138539","GO:0004520","endodeoxyribonuclease activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000014887","Pfam","IPR004947","Deoxyribonuclease II","Coding",11.74,11.06,11.92,6.95,6.85,6.16]
["TC1400000806.rn.1",9.68,5.68,16,"up",1.69718863623137e-6,9.56987984677986e-5,"Htra3","HtrA serine peptidase 3","chr14","+","NM_001271027","coding",80248140,80276534,119,"14q21",360959,"NM_001271027","RefSeq","Rattus norvegicus HtrA serine peptidase 3 (Htra3), mRNA.","chr14",100,100,"NM_001271027","D3ZA76","NM_001271027","Rn.15228","adipose tissue| brain| connective tissue| eye| heart| kidney| lung| muscle| ovary| pancreas| pituitary gland| placenta| spleen| fetus| juvenile| adult","NM_001271027","GO:0001558","regulation of cell growth","inferred from electronic annotation","NM_001271027","GO:0005576","extracellular region","inferred from electronic annotation","NM_001271027","GO:0004175","endopeptidase activity","not recorded",{"$nulls":3},"ENSRNOT00000010852","Pfam","IPR001254","Peptidase S1","Coding",9.5,9.5,10.05,5.48,5.81,5.75]
["TC1700001490.rn.1",4.83,7.31,-5.579,"down",1.70675976052975e-6,9.56987984677986e-5,"Rbm24","RNA binding motif protein 24","chr17","-","NM_001191100","coding",18671037,18682876,50,"17p13",690139,"NM_001191100","RefSeq","Rattus norvegicus RNA binding motif protein 24 (Rbm24), mRNA.","chr17",100,100,"NM_001191100","M0R7T6","NM_001191100","Rn.199020","brain| embryonic tissue| eye| heart| muscle| fetus| adult","NM_001191100","GO:0010830","regulation of myotube differentiation","inferred from electronic annotation",{"$nulls":4},"NM_001191100","GO:0003730","mRNA 3'-UTR binding","inferred from electronic annotation",{"$nulls":7},"Coding",4.59,4.78,5.11,7.4,7.41,7.11]
["TC1100001050.rn.1",5.88,7.43,-2.928,"down",1.70680424611281e-6,9.56987984677986e-5,"Epha3","Eph receptor A3","chr11","-","NM_031564","coding",421253,783560,220,"11p12",29210,"NM_031564","RefSeq","Rattus norvegicus Eph receptor A3 (Epha3), mRNA.","chr11",100,100,"NM_031564","O08680","NM_031564","Rn.10713","brain| lung| prostate|tailbud embryo","NM_031564","GO:0001660","fever generation","inferred from expression pattern","NM_031564","GO:0005769","early endosome","inferred from electronic annotation","NM_031564","GO:0005003","ephrin receptor activity","not recorded",{"$nulls":3},"ENSRNOT00000040065","Pfam","IPR000719","Protein kinase domain","Coding",5.82,5.91,5.92,7.35,7.4,7.55]
["TC0300001521.rn.1",4.84,7.55,-6.543,"down",1.71333408114014e-6,9.56987984677986e-5,"Itpka","inositol-trisphosphate 3-kinase A","chr3","+","NM_031045","coding",111542281,111553605,121,"3q35",81677,"NM_031045","RefSeq","Rattus norvegicus inositol-trisphosphate 3-kinase A (Itpka), mRNA.","chr3",100,100,"NM_031045","P17105","NM_031045","Rn.9877","brain| colon| testis| adult","NM_031045","GO:0006020","inositol metabolic process","inferred from electronic annotation","NM_031045","GO:0043197","dendritic spine","inferred from direct assay","NM_031045","GO:0004683","calmodulin-dependent protein kinase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000007247","Pfam","IPR005522","Inositol polyphosphate kinase","Coding",4.85,4.74,4.92,7.37,7.56,7.71]
["TC1700000242.rn.1",11.32,9.16,4.469,"up",1.76030006905842e-6,9.74501881207988e-5,"LOC100361620","thymosin beta 10-like","chr17","+","mRNARGD2418120_1","coding",14159709,14160187,30,null,"NA","mRNARGD2418120_1","Rat Genome Database","thymosin beta 10-like","chr17",100,100,{"$nulls":24},"Coding",11.45,11.24,11.27,9.19,9.33,8.95]
["TC1500000192.rn.1",11.91,10.64,2.412,"up",1.76091645249515e-6,9.74501881207988e-5,"LOC100361240","ribosomal protein S10-like","chr15","+","ENSRNOT00000047113","coding",19429508,19430032,30,null,100361240,"ENSRNOT00000047113","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:23394877:23395380:1 gene:ENSRNOG00000049099 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000047113","D3ZJY5",{"$nulls":18},"ENSRNOT00000047113","Pfam","IPR005326","Plectin/S10, N-terminal","Coding",12.08,11.83,11.81,10.68,10.71,10.53]
["TC0100000503.rn.1",6.35,8.1,-3.364,"down",1.78135307514721e-6,9.79839949389839e-5,"Acat2","acetyl-CoA acetyltransferase 2","chr1","+","NM_001006995","coding",47972399,47992654,136,"1q11",308100,"NM_001006995","RefSeq","Rattus norvegicus acetyl-CoA acetyltransferase 2 (Acat2), mRNA.","chr1",100,100,"NM_001006995","Q5XI22","NM_001006995","Rn.203063","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| ovary| pancreas| prostate| testis| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001006995","GO:0001889","liver development","inferred from expression pattern","NM_001006995","GO:0005634","nucleus","not recorded","NM_001006995","GO:0003985","acetyl-CoA C-acetyltransferase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000033408","Pfam","IPR020616","Thiolase, N-terminal","Coding",6.46,6.17,6.41,8.2,8.24,7.86]
["TC1000001421.rn.1",12.34,10.15,4.563,"up",1.78245019864826e-6,9.79839949389839e-5,"LOC100359496","thymosin beta 10-like","chr10","+","mRNARGD6616490_1","coding",81450792,81451264,30,null,"NA","mRNARGD6616490_1","Rat Genome Database","thymosin beta 10-like","chr10",100,100,{"$nulls":24},"Coding",12.34,12.32,12.37,10.13,10.01,10.32]
["TC1800001827.rn.1",10.76,5.51,38.055,"up",1.80219447470865e-6,9.82605419348396e-5,"Cndp1","carnosine dipeptidase 1 (metallopeptidase M20 family)","chr18","-","NM_001007687","coding",81466717,81498915,130,"18q12.3",307212,"NM_001007687","RefSeq","Rattus norvegicus carnosine dipeptidase 1 (metallopeptidase M20 family) (Cndp1), mRNA.","chr18",100,100,"NM_001007687","Q66HG3","NM_001007687","Rn.15548","colon| kidney| liver| nerve| fetus| juvenile| adult","NM_001007687","GO:0006508","proteolysis","inferred from electronic annotation",{"$nulls":4},"NM_001007687","GO:0004180","carboxypeptidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000034970","Pfam","IPR002933","Peptidase M20","Coding",10.99,10.47,10.83,5.45,5.54,5.53]
["TC0500002002.rn.1",9.65,8.81,1.79,"up",1.80269944612063e-6,9.82605419348396e-5,"Rpl22","ribosomal protein L22","chr5","+","NM_031104","coding",169501631,169514293,90,"5q36",81768,"NM_031104","RefSeq","Rattus norvegicus ribosomal protein L22 (Rpl22), mRNA.","chr5",100,100,"NM_031104","P47198","NM_031104","Rn.21738","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| small intestine| spleen| vibrissa| metamorphosing embryo| adult","NM_031104","GO:0006412","translation","inferred from electronic annotation","NM_031104","GO:0005634","nucleus","not recorded","NM_031104","GO:0003723","RNA binding","inferred from electronic annotation","NM_031104","GenMAPP","Ribosomal_Proteins","ENSRNOT00000014904","Pfam","IPR002671","Ribosomal protein L22e","Coding",9.67,9.59,9.7,8.78,8.91,8.73]
["TC0100003765.rn.1",5.67,6.54,-1.828,"down",1.80445068661642e-6,9.82605419348396e-5,"Neurl1","neuralized E3 ubiquitin protein ligase 1","chr1","+","NM_001107605","coding",266952701,267038880,141,"1q54",309459,"NM_001107605","RefSeq","Rattus norvegicus neuralized E3 ubiquitin protein ligase 1 (Neurl1), mRNA.","chr1",100,100,"NM_001107605","D3ZZE6","NM_001107605","Rn.218237","brain| placenta| testis| adult","NM_001107605","GO:0006417","regulation of translation","not recorded","NM_001107605","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001107605","GO:0004842","ubiquitin-protein transferase activity","not recorded",{"$nulls":3},"ENSRNOT00000054696","Pfam","IPR006573","NEUZ domain","Coding",5.6,5.7,5.7,6.54,6.49,6.6]
["TC0400002298.rn.1",7.93,10.06,-4.377,"down",1.81803409183647e-6,9.83685134187749e-5,"Sema3a","sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A","chr4","-","NM_017310","coding",18170375,18485279,280,"4q12",29751,"NM_017310","RefSeq","Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A (Sema3a), mRNA.","chr4",100,100,"NM_017310","Q63548","NM_017310","Rn.44410","adipose tissue| pineal gland| adult","NM_017310","GO:0001764","neuron migration","inferred from electronic annotation","NM_017310","GO:0005615","extracellular space","traceable author statement","NM_017310","GO:0004872","receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000034692","Pfam","IPR001627","Sema domain","Coding",7.93,7.91,7.94,9.91,9.99,10.27]
["TC0200004918.rn.1",8.91,10.55,-3.117,"down",1.819612830178e-6,9.83685134187749e-5,"Adgrl2","latrophilin 2","chr2","-","NM_001190475","coding",258792838,258997151,355,"2q45",171447,"NM_001190475","RefSeq","Rattus norvegicus latrophilin 2 (Lphn2), transcript variant 2, mRNA.","chr2",100,100,"NM_001190475","O88923","NM_001190475","Rn.12089","brain| colon| embryonic tissue| eye| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001190475","GO:0007218","neuropeptide signaling pathway","inferred from electronic annotation","NM_001190475","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001190475","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000040566","Pfam","IPR000203","GPS motif","Coding",8.76,8.94,9.02,10.39,10.57,10.68]
["TC0700003524.rn.1",12.69,11.11,2.99,"up",1.82342187098299e-6,9.83685134187749e-5,"Rpl3","ribosomal protein L3","chr7","-","NM_198753","coding",121297355,121311565,155,"7q34",300079,"NM_198753","RefSeq","Rattus norvegicus ribosomal protein L3 (Rpl3), mRNA.","chr7",100,100,"NM_198753","P21531","NM_198753","Rn.107726","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_198753","GO:0006412","translation","inferred from electronic annotation","NM_198753","GO:0005634","nucleus","not recorded","NM_198753","GO:0003735","structural constituent of ribosome","inferred from electronic annotation","NM_198753","GenMAPP","Ribosomal_Proteins","ENSRNOT00000067032","Pfam","IPR000597","Ribosomal protein L3","Coding",12.65,12.65,12.78,11.31,11.08,10.94]
["TC0800000119.rn.1",5.31,7.03,-3.294,"down",1.85763316245684e-6,9.97873791617771e-5,"Vstm5","V-set and transmembrane domain containing 5","chr8","+","NM_001144870","coding",13796021,13816123,40,"8q12",500947,"NM_001144870","RefSeq","Rattus norvegicus V-set and transmembrane domain containing 5 (Vstm5), mRNA.","chr8",100,100,"NM_001144870","Q5M7U7","NM_001144870","Rn.64447","kidney| adult",{"$nulls":4},"NM_001144870","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000013927","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",5.17,5.43,5.34,7.12,6.88,7.1]
["TC0200000528.rn.1",13.3,11.18,4.347,"up",1.86121183860548e-6,9.97873791617771e-5,"LOC100911590","thymosin beta-10-like","chr2","+","mRNARGD6492002_1","coding",57443012,57443128,30,null,"NA","mRNARGD6492002_1","Rat Genome Database","thymosin beta-10-like","chr2",100,100,{"$nulls":24},"Coding",13.47,13.44,13,11.23,11.17,11.14]
["TC0200003174.rn.1",13.14,7.14,64,"up",1.88899508487509e-6,0.000100965334213431,"Fam105a","family with sequence similarity 105, member A","chr2","-","NM_001037648","coding",80383648,80408672,78,"2q22",310190,"NM_001037648","RefSeq","Rattus norvegicus family with sequence similarity 105, member A (Fam105a), mRNA.","chr2",100,100,"NM_001037648","Q3B7D8","NM_001037648","Rn.162566","brain| connective tissue| heart| liver| lung| placenta| prostate| juvenile| adult",{"$nulls":19},"Coding",13.53,12.55,13.35,7.41,7.23,6.79]
["TC1400001232.rn.1",10.56,8.27,4.891,"up",1.9377058999262e-6,0.00010311694413179,"Idua","alpha-L-iduronidase","chr14","-","NM_001172084","coding",2041828,2056864,280,"14p22",360904,"NM_001172084","RefSeq","Rattus norvegicus alpha-L-iduronidase (Idua), mRNA.","chr14",100,100,"NM_001172084","D3ZE16","NM_001172084","Rn.203375","adipose tissue| brain| connective tissue| dorsal root ganglion| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen|tailbud embryo| juvenile| adult","NM_001172084","GO:0000902","cell morphogenesis","inferred from electronic annotation","NM_001172084","GO:0005764","lysosome","inferred from direct assay","NM_001172084","GO:0003940","L-iduronidase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000000048","Pfam","IPR000514","Glycoside hydrolase, family 39","Coding",10.57,10.48,10.63,8.27,8.27,8.28]
["TC0300003907.rn.1",5.01,7.33,-4.993,"down",1.94445579708908e-6,0.00010311694413179,"Grem1","gremlin 1","chr3","-","NM_019282","coding",105203309,105214989,50,"3q34",50566,"NM_019282","RefSeq","Rattus norvegicus gremlin 1 (Grem1), mRNA.","chr3",100,100,"NM_019282","O35793","NM_019282","Rn.42929","vibrissa","NM_019282","GO:0000902","cell morphogenesis","not recorded","NM_019282","GO:0005615","extracellular space","inferred from direct assay","NM_019282","GO:0005125","cytokine activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000037895","Pfam","IPR004133","DAN","Coding",4.86,4.94,5.22,7.36,7.47,7.15]
["TC1300001904.rn.1",11.05,7.71,10.126,"up",1.94705875742485e-6,0.00010311694413179,"Fcer1g","Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide","chr13","-","NM_001131001","coding",89601888,89606688,110,"13q24",25441,"NM_001131001","RefSeq","Rattus norvegicus Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide (Fcer1g), mRNA.","chr13",100,100,"NM_001131001","B1H251","NM_001131001","Rn.201810","brain| connective tissue| dorsal root ganglion| kidney| liver| lung| muscle| pituitary gland| placenta| prostate| small intestine| adult","NM_001131001","GO:0001798","positive regulation of type IIa hypersensitivity","inferred from electronic annotation","NM_001131001","GO:0005887","integral component of plasma membrane","inferred from electronic annotation","NM_001131001","GO:0019767","IgE receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000029179","Pfam","IPR003110","Phosphorylated immunoreceptor signalling ITAM","Coding",10.93,10.93,11.3,7.76,7.71,7.67]
["TC0200000789.rn.1",9.49,7.11,5.205,"up",1.95911536054885e-6,0.000103440100085392,"Pag1","phosphoprotein membrane anchor with glycosphingolipid microdomains 1","chr2","+","NM_022253","coding",94266104,94277680,50,null,64019,"NM_022253","RefSeq","Rattus norvegicus phosphoprotein membrane anchor with glycosphingolipid microdomains 1 (Pag1), mRNA.","chr2",100,100,"NM_022253","Q9JM80","NM_022253","Rn.127786",null,"NM_022253","GO:0002376","immune system process","inferred from electronic annotation","NM_022253","GO:0005886","plasma membrane","inferred from electronic annotation","NM_022253","GO:0005068","transmembrane receptor protein tyrosine kinase adaptor activity","traceable author statement",{"$nulls":7},"Coding",9.45,9.16,9.86,7.13,7.08,7.12]
["TC0800003560.rn.1",14.02,9.78,18.896,"up",2.01744407399836e-6,0.000105293217726099,"Cx3cr1","chemokine (C-X3-C motif) receptor 1","chr8","-","NM_133534","coding",128740756,128754514,30,"8q32",171056,"NM_133534","RefSeq","Rattus norvegicus chemokine (C-X3-C motif) receptor 1 (Cx3cr1), mRNA.","chr8",100,100,"NM_133534","P35411","NM_133534","Rn.10482","prostate| adult","NM_133534","GO:0002282","microglial cell activation involved in immune response","inferred from electronic annotation","NM_133534","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_133534","GO:0004896","cytokine receptor activity","not recorded","NM_133534","GenMAPP","GPCRDB_Class_A_Rhodopsin-like","ENSRNOT00000025019","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",13.82,13.48,14.77,9.92,10,9.43]
["TC2000000289.rn.1",7.09,5.46,3.095,"up",2.01845843663526e-6,0.000105293217726099,"Fgd2","FYVE, RhoGEF and PH domain containing 2","chr20","+","NM_001107617","coding",6973379,6990026,207,"20p12",309653,"NM_001107617","RefSeq","Rattus norvegicus FYVE, RhoGEF and PH domain containing 2 (Fgd2), mRNA.","chr20",100,100,"NM_001107617","D3Z9I3","NM_001107617","Rn.89444","heart| liver| ovary| spleen| juvenile","NM_001107617","GO:0032319","regulation of Rho GTPase activity","inferred from electronic annotation",{"$nulls":4},"NM_001107617","GO:0005089","Rho guanyl-nucleotide exchange factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000041665","Pfam","IPR000219","Dbl homology (DH) domain","Coding",6.99,6.99,7.3,5.41,5.39,5.58]
["TC1500002126.rn.1",8.41,9.92,-2.848,"down",2.02911760861042e-6,0.000105532341255005,"Dgkh","diacylglycerol kinase, eta","chr15","-","ENSRNOT00000044063","coding",60791570,60967229,452,"15q11",361076,"ENSRNOT00000044063","ENSEMBL","ensembl:known chromosome:Rnor_5.0:15:64471270:64535926:-1 gene:ENSRNOG00000010065 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000044063","D4ADL8","ENSRNOT00000044063","Rn.200706","prostate","ENSRNOT00000044063","GO:0007205","protein kinase C-activating G-protein coupled receptor signaling pathway","inferred from electronic annotation","ENSRNOT00000044063","GO:0005634","nucleus","not recorded","ENSRNOT00000044063","GO:0003951","NAD+ kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000044063","Pfam","IPR000756","Diacylglycerol kinase, accessory domain","Coding",8.55,8.29,8.4,9.77,9.86,10.12]
["TC0200001729.rn.1",14.45,12.51,3.837,"up",2.08718450046585e-6,0.000107802826903263,"Mcl1","myeloid cell leukemia sequence 1","chr2","+","NM_021846","coding",197786212,197788992,30,"2q34",60430,"NM_021846","RefSeq","Rattus norvegicus myeloid cell leukemia sequence 1 (Mcl1), mRNA.","chr2",100,100,"NM_021846","Q9Z1P3","NM_021846","Rn.129914",null,"NM_021846","GO:0007275","multicellular organismal development","inferred from electronic annotation","NM_021846","GO:0005634","nucleus","not recorded","NM_021846","GO:0005515","protein binding","inferred from physical interaction","NM_021846","GenMAPP","Apoptosis_GenMAPP",{"$nulls":4},"Coding",14.41,14.35,14.59,12.53,12.6,12.39]
["TC0200004978.rn.1",11.62,6.76,29.041,"up",2.09752854863812e-6,0.000107802826903263,"Shc1","SHC (Src homology 2 domain containing) transforming protein 1","chr2","+","NM_001164060","coding",188745493,188757084,189,"2q34",85385,"NM_001164060","RefSeq","Rattus norvegicus SHC (Src homology 2 domain containing) transforming protein 1 (Shc1), transcript variant 1, mRNA.","chr2",100,100,"NM_001164060","Q5M824","NM_001164060","Rn.138818","adipose tissue| colon| connective tissue| dorsal root ganglion| embryonic tissue| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001164060","GO:0000165","MAPK cascade","inferred from electronic annotation","NM_001164060","GO:0005634","nucleus","inferred from direct assay","NM_001164060","GO:0001784","phosphotyrosine binding","inferred from physical interaction","NM_001164060","GenMAPP","Integrin-mediated_cell_adhesion_KEGG","ENSRNOT00000028038","Pfam","IPR000980","SH2 domain","Coding",11.69,11.41,11.76,6.66,6.72,6.89]
["TC0300003762.rn.1",7.61,4.78,7.111,"up",2.09759688522842e-6,0.000107802826903263,"Cd44","Cd44 molecule","chr3","-","NM_012924","coding",92695083,92783814,280,"3q31",25406,"NM_012924","RefSeq","Rattus norvegicus Cd44 molecule (Cd44), mRNA.","chr3",100,100,"NM_012924","P26051","NM_012924","Rn.1120","adipose tissue| connective tissue| dorsal root ganglion| eye| heart| kidney| lung| pancreas| pituitary gland| placenta| prostate| spleen| thymus| vibrissa|tailbud embryo| juvenile| adult","NM_012924","GO:0001558","regulation of cell growth","inferred from direct assay","NM_012924","GO:0005634","nucleus","inferred from direct assay","NM_012924","GO:0004415","hyalurononglucosaminidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008760","Pfam","IPR000538","Link","Coding",7.85,7.52,7.45,4.9,4.65,4.8]
["TC0X00002049.rn.1",13.29,10.07,9.318,"up",2.11911210352186e-6,0.00010817146669297,"Magt1","magnesium transporter 1","chrX","-","NM_053946","coding",77020429,77061633,190,"Xq31",116967,"NM_053946","RefSeq","Rattus norvegicus magnesium transporter 1 (Magt1), mRNA.","chrX",100,100,"NM_053946","O35777","NM_053946","Rn.43578","brain| colon| heart| kidney| liver| lung| prostate| fetus| juvenile| adult","NM_053946","GO:0006810","transport","inferred from electronic annotation","NM_053946","GO:0005886","plasma membrane","inferred from electronic annotation","NM_053946","GO:0015095","magnesium ion transmembrane transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000068479","Pfam","IPR021149","Oligosaccharyl transferase complex, subunit OST3/OST6","Coding",13.41,13.1,13.35,10.15,10.18,9.88]
["TC0400004123.rn.1",14.81,12.61,4.595,"up",2.14382150436618e-6,0.00010817146669297,"LOC100361596","ENCODES a protein that exhibits actin binding (inferred) AND  INVOLVED IN actin cytoskeleton organization (inferred) AND  sequestering of actin monomers (inferred) AND  FOUND IN cytoplasm (inferred)","chr4","-","mRNARGD2429706_t00","coding",182924958,182925147,30,null,"NA","mRNARGD2429706_t00","Rat Genome Database","ENCODES a protein that exhibits actin binding (inferred) AND  INVOLVED IN actin cytoskeleton organization (inferred) AND  sequestering of actin monomers (inferred) AND  FOUND IN cytoplasm (inferred)","chr4",100,100,{"$nulls":24},"Coding",14.94,14.86,14.63,12.84,12.55,12.44]
["TC2000000771.rn.1",14.03,8.03,64,"up",2.14513324873539e-6,0.00010817146669297,"Smpdl3a","sphingomyelin phosphodiesterase, acid-like 3A","chr20","+","NM_001005539","coding",40778825,40801081,120,"20q11",294422,"NM_001005539","RefSeq","Rattus norvegicus sphingomyelin phosphodiesterase, acid-like 3A (Smpdl3a), mRNA.","chr20",100,100,"NM_001005539","Q641Z7","NM_001005539","Rn.8142","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| testis| juvenile| adult","NM_001005539","GO:0006685","sphingomyelin catabolic process","inferred from electronic annotation","NM_001005539","GO:0005615","extracellular space","inferred from electronic annotation","NM_001005539","GO:0004767","sphingomyelin phosphodiesterase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000001081","Pfam","IPR004843","Calcineurin-like phosphoesterase domain, apaH type","Coding",14.74,13.67,13.67,8.06,8.34,7.7]
["TC0100004029.rn.1",7.96,8.93,-1.959,"down",2.14870198698292e-6,0.00010817146669297,"Aig1","androgen-induced 1","chr1","-","NM_001134425","coding",7816841,8038848,110,"1p13",292486,"NM_001134425","RefSeq","Rattus norvegicus androgen-induced 1 (Aig1), mRNA.","chr1",100,100,"NM_001134425","B2RZC0","NM_001134425","Rn.14443","brain| connective tissue| dorsal root ganglion| liver| lung| nerve| ovary| pancreas| placenta| prostate| adult",{"$nulls":4},"NM_001134425","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000046539","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000046539","Pfam","IPR006838","FAR-17a/AIG1-like protein","Coding",8.05,7.86,7.98,8.85,9.04,8.91]
["TC0600000327.rn.1",6.96,7.64,-1.602,"down",2.21399051143083e-6,0.000110515026362256,"Dtnb","dystrobrevin, beta","chr6","+","NM_001012191","coding",27975291,28177566,336,"6q14",362715,"NM_001012191","RefSeq","Rattus norvegicus dystrobrevin, beta (Dtnb), mRNA.","chr6",100,100,"NM_001012191","P84060","NM_001012191","Rn.61275","brain| eye| heart| kidney| nerve| prostate| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_001012191","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001012191","GO:0005509","calcium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000060810","Pfam","IPR000433","Zinc finger, ZZ-type","Coding",6.91,7.01,6.97,7.63,7.61,7.69]
["TC2000000129.rn.1",12.21,7.13,33.825,"up",2.3552759262299e-6,0.000116562672690996,"LOC100909593","RT1 class II, locus DMa","chr20","+","ENSRNOT00000072458","coding",3935507,3938915,50,"20p12",294274,"ENSRNOT00000072458","ENSEMBL","ensembl:known chromosome:Rnor_5.0:20:6015060:6018462:1 gene:ENSRNOG00000047854 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000072458","Q95574","ENSRNOT00000072458","Rn.35809","adipose tissue| brain| colon| connective tissue| embryonic tissue| eye| heart| lung| pancreas| placenta| prostate| spleen| thymus| juvenile| adult","ENSRNOT00000072458","GO:0002503","peptide antigen assembly with MHC class II protein complex","not recorded","ENSRNOT00000072458","GO:0005622","intracellular","not recorded","ENSRNOT00000072458","GO:0023026","MHC class II protein complex binding","not recorded",{"$nulls":3},"ENSRNOT00000072458","Pfam","IPR001003","MHC class II, alpha chain, N-terminal","Coding",12.03,11.76,12.83,7.22,7.3,6.87]
["TC0800000228.rn.1",10.34,8.05,4.891,"up",2.37809959327736e-6,0.000117304266131588,"Slc44a2","solute carrier family 44 (choline transporter), member 2","chr8","+","NM_001134715","coding",22351281,22385869,302,"8q13",363024,"NM_001134715","RefSeq","Rattus norvegicus solute carrier family 44 (choline transporter), member 2 (Slc44a2), mRNA.","chr8",100,100,"NM_001134715","B4F795","NM_001134715","Rn.140320","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| muscle| ovary| pancreas| placenta| prostate| spleen| thymus|tailbud embryo| juvenile| adult","NM_001134715","GO:0006810","transport","inferred from electronic annotation","NM_001134715","GO:0005765","lysosomal membrane","inferred from electronic annotation","NM_001134715","GO:0004871","signal transducer activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000049973","Pfam","IPR007603","Choline transporter-like","Coding",10.19,10.14,10.69,8.28,8.09,7.77]
["TSUnmapped00000120.rn.1",13.61,12.14,2.77,"up",2.39286525804728e-6,0.000117419385303783,"Rpl13","ribosomal protein L13",null,null,"NM_031101","coding","NA","NA",30,"19q12",81765,"NM_031101","RefSeq","Rattus norvegicus ribosomal protein L13 (Rpl13), mRNA.",null,100,100,"NM_031101","P41123","NM_031101","Rn.908","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| ovary| pancreas| pituitary gland| prostate| spleen| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_031101","GO:0006412","translation","non-traceable author statement","NM_031101","GO:0005634","nucleus","not recorded","NM_031101","GO:0003735","structural constituent of ribosome","non-traceable author statement","NM_031101","GenMAPP","Ribosomal_Proteins",{"$nulls":4},"Coding",13.67,13.46,13.7,12.2,12.27,11.95]
["TC0200002247.rn.1",6.42,9.86,-10.853,"down",2.44193862205461e-6,0.000118154400993624,"Tacr3","tachykinin receptor 3","chr2","+","NM_017053","coding",240021152,240118988,50,"2q42-q44",24808,"NM_017053","RefSeq","Rattus norvegicus tachykinin receptor 3 (Tacr3), mRNA.","chr2",100,100,"NM_017053","P16177","NM_017053","Rn.9702","brain| adult","NM_017053","GO:0007217","tachykinin receptor signaling pathway","inferred from direct assay","NM_017053","GO:0005634","nucleus","inferred from direct assay","NM_017053","GO:0004995","tachykinin receptor activity","inferred from direct assay","NM_017053","GenMAPP","GPCRDB_Other","ENSRNOT00000012473","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",6.57,6.17,6.51,9.53,10.18,9.86]
["TC1200000515.rn.1",8.61,4.73,14.723,"up",2.44488018055937e-6,0.000118154400993624,"Gusb","glucuronidase, beta","chr12","+","NM_017015","coding",30198817,30227771,190,"12q13",24434,"NM_017015","RefSeq","Rattus norvegicus glucuronidase, beta (Gusb), mRNA.","chr12",100,100,"NM_017015","P06760","NM_017015","Rn.3692","brain| connective tissue| dorsal root ganglion| heart| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen|tailbud embryo| juvenile| adult","NM_017015","GO:0005975","carbohydrate metabolic process","inferred from electronic annotation","NM_017015","GO:0005764","lysosome","inferred from direct assay","NM_017015","GO:0004553","hydrolase activity, hydrolyzing O-glycosyl compounds","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000001215","Pfam","IPR006102","Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich","Coding",9.01,8.26,8.56,4.72,4.64,4.84]
["TC1300001554.rn.1",4.58,7.16,-5.979,"down",2.45181126109772e-6,0.000118154400993624,"Rgs13","regulator of G-protein signaling 13","chr13","-","ENSRNOT00000005163","coding",60971257,61003781,70,"13q21",498246,"ENSRNOT00000005163","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:65957846:65983487:-1 gene:ENSRNOG00000003888 gene_biotype:protein_coding transcript_biotype:protein_coding","chr13",100,100,"ENSRNOT00000005163","D3ZCS1",{"$nulls":3},"ENSRNOT00000005163","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","ENSRNOT00000005163","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000005163","GO:0005096","GTPase activator activity","not recorded",{"$nulls":3},"ENSRNOT00000005163","Pfam","IPR000342","Regulator of G protein signalling domain","Coding",4.31,4.96,4.47,7.25,6.93,7.29]
["TC0900001052.rn.1",15.24,13.96,2.428,"up",2.45611436081213e-6,0.000118154400993624,"Ptma","prothymosin alpha","chr9","+","NM_021740","coding",93545190,93549493,160,"9q35",29222,"NM_021740","RefSeq","Rattus norvegicus prothymosin alpha (Ptma), mRNA.","chr9",100,100,"NM_021740","P06302","NM_021740","Rn.817","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_021740","GO:0008283","cell proliferation","traceable author statement","NM_021740","GO:0005634","nucleus","inferred from electronic annotation","NM_021740","GO:0042393","histone binding","not recorded",{"$nulls":3},"ENSRNOT00000025093","Pfam","IPR004931","Prothymosin/parathymosin","Coding",15.35,15.18,15.18,14.02,13.96,13.89]
["TC2000001248.rn.1",12.84,11.88,1.945,"up",2.45874391831546e-6,0.000118154400993624,"Glo1","glyoxalase 1","chr20","-","NM_207594","coding",9272771,9291624,109,"20p12",294320,"NM_207594","RefSeq","Rattus norvegicus glyoxalase 1 (Glo1), mRNA.","chr20",100,100,"NM_207594","Q6P7Q4","NM_207594","Rn.108014","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| vibrissa|tailbud embryo| fetus| juvenile| adult","NM_207594","GO:0005975","carbohydrate metabolic process","inferred from direct assay","NM_207594","GO:0070062","extracellular vesicular exosome","not recorded","NM_207594","GO:0004462","lactoylglutathione lyase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000000650","Pfam","IPR004360","Glyoxalase/fosfomycin resistance/dioxygenase domain","Coding",12.92,12.71,12.89,11.85,11.95,11.84]
["TC2000000584.rn.1",13.18,10.91,4.823,"up",2.46037223655413e-6,0.000118154400993624,"Reep3","receptor accessory protein 3","chr20","+","NM_001106386","coding",22912939,22998985,110,"20p11",294375,"NM_001106386","RefSeq","Rattus norvegicus receptor accessory protein 3 (Reep3), mRNA.","chr20",100,100,"NM_001106386","B0BNL5","NM_001106386","Rn.224502","adrenal gland| colon| dorsal root ganglion| kidney| lung| pituitary gland| placenta| prostate| metamorphosing embryo| fetus| juvenile| adult","NM_001106386","GO:0006998","nuclear envelope organization","not recorded",{"$nulls":11},"ENSRNOT00000067920","Pfam","IPR004345","TB2/DP1/HVA22-related protein","Coding",13.3,13.02,13.23,10.93,11.25,10.55]
["TC2000000661.rn.1",17.68,16.19,2.809,"up",2.48672570068405e-6,0.000118154400993624,"Psap","prosaposin","chr20","+","NM_001190236","coding",29831301,29856878,200,"20q11",25524,"NM_001190236","RefSeq","Rattus norvegicus prosaposin (Psap), transcript variant 2, mRNA.","chr20",100,100,"NM_001190236","P10960","NM_001190236","Rn.97173","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001190236","GO:0006665","sphingolipid metabolic process","inferred from electronic annotation","NM_001190236","GO:0005615","extracellular space","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000000696","Pfam","IPR003119","Saposin type A","Coding",17.7,17.57,17.77,16.24,16.3,16.02]
["TC1000003522.rn.1",14.04,9.3,26.723,"up",2.49568212741512e-6,0.000118154400993624,"Scpep1","serine carboxypeptidase 1","chr10","-","NM_133383","coding",76230368,76263879,189,"10q26",114861,"NM_133383","RefSeq","Rattus norvegicus serine carboxypeptidase 1 (Scpep1), mRNA.","chr10",100,100,"NM_133383","Q920A6","NM_133383","Rn.2108","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| vibrissa| metamorphosing embryo| juvenile| adult","NM_133383","GO:0006508","proteolysis","inferred from electronic annotation","NM_133383","GO:0005576","extracellular region","inferred from electronic annotation","NM_133383","GO:0004185","serine-type carboxypeptidase activity","traceable author statement",{"$nulls":3},"ENSRNOT00000003219","Pfam","IPR001563","Peptidase S10, serine carboxypeptidase","Coding",14.26,13.59,14.27,9.72,8.99,9.2]
["TC0100002985.rn.1",9.6,5.33,19.293,"up",2.50449204858086e-6,0.000118154400993624,"Unc93b1","unc-93 homolog B1 (C. elegans)","chr1","+","NM_001108513","coding",219144387,219183941,184,"1q42",361689,"NM_001108513","RefSeq","Rattus norvegicus unc-93 homolog B1 (C. elegans) (Unc93b1), mRNA.","chr1",100,100,"NM_001108513","D3ZDJ4","NM_001108513","Rn.204473","connective tissue| dorsal root ganglion| kidney| liver| lung| placenta| prostate| spleen| juvenile| adult","NM_001108513","GO:0002224","toll-like receptor signaling pathway","not recorded","NM_001108513","GO:0005622","intracellular","not recorded","NM_001108513","GO:0035325","Toll-like receptor binding","inferred from electronic annotation",{"$nulls":7},"Coding",9.58,9.41,9.8,5.31,5.41,5.26]
["TC1200001509.rn.1",6.31,8.13,-3.531,"down",2.50975858961809e-6,0.000118154400993624,"Aacs","acetoacetyl-CoA synthetase","chr12","-","NM_023104","coding",36512393,36555735,190,"12q14",65984,"NM_023104","RefSeq","Rattus norvegicus acetoacetyl-CoA synthetase (Aacs), mRNA.","chr12",100,100,"NM_023104","Q9JMI1","NM_023104","Rn.9215","connective tissue| dorsal root ganglion| kidney| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| thymus| juvenile| adult","NM_023104","GO:0001889","liver development","inferred from direct assay","NM_023104","GO:0005829","cytosol","inferred from direct assay","NM_023104","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000001292","Pfam","IPR000873","AMP-dependent synthetase/ligase","Coding",6.32,6.32,6.3,8.09,8.18,8.12]
["TC0900001441.rn.1",9.3,4.68,24.59,"up",2.51217871581857e-6,0.000118154400993624,"Vav1","vav 1 guanine nucleotide exchange factor","chr9","-","NM_012759","coding",9617551,9675167,278,"9q11-q12",25156,"NM_012759","RefSeq","Rattus norvegicus vav 1 guanine nucleotide exchange factor (Vav1), mRNA.","chr9",100,100,"NM_012759","P54100","NM_012759","Rn.48861","adipose tissue| connective tissue| pancreas| spleen| thymus| juvenile| adult","NM_012759","GO:0002768","immune response-regulating cell surface receptor signaling pathway","inferred from expression pattern","NM_012759","GO:0005622","intracellular","not recorded","NM_012759","GO:0005085","guanyl-nucleotide exchange factor activity","not recorded",{"$nulls":3},"ENSRNOT00000073294","Pfam","IPR000219","Dbl homology (DH) domain","Coding",9.42,9.08,9.4,4.56,4.67,4.8]
["TC0100003230.rn.1",11.71,5.4,79.341,"up",2.51667309698008e-6,0.000118154400993624,"Ms4a6bl","membrane-spanning 4-domains, subfamily A, member 6B-like (Ms4a6bl), mRNA","chr1","+","NM_001006975_2","coding",227757459,227769336,70,null,"NA","NM_001006975_2","RefSeq","membrane-spanning 4-domains, subfamily A, member 6B-like (Ms4a6bl), mRNA","chr1",100,100,"ENSRNOT00000049574","Q5XIJ0","ENSRNOT00000049574","Rn.17885","adipose tissue| connective tissue| dorsal root ganglion| heart| placenta| prostate| spleen| thymus| adult",{"$nulls":4},"ENSRNOT00000049574","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000049574","Pfam","IPR007237","CD20-like","Coding",12.3,11.5,11.32,5.41,5.59,5.2]
["TC1400000957.rn.1",13.53,12.21,2.497,"up",2.53858744319075e-6,0.00011886200128212,"LOC100360491","60S ribosomal protein L13-like","chr14","+","ENSRNOT00000041303","coding",86751116,86751846,30,null,100360491,"ENSRNOT00000041303","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:80385618:80386332:1 gene:ENSRNOG00000032595 gene_biotype:protein_coding transcript_biotype:protein_coding","chr14",100,100,"ENSRNOT00000041303","D3ZRM9",{"$nulls":3},"ENSRNOT00000041303","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000041303","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000041303","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000041303","Pfam","IPR001380","Ribosomal protein L13e","Coding",13.58,13.39,13.61,12.26,12.3,12.06]
["TC0600000140.rn.1",15.6,14.75,1.803,"up",2.56573886063792e-6,0.00011960351371738,"Eif3h","eukaryotic translation initiation factor 3, subunit H","chr6","+","NM_198751","coding",10151728,10236696,80,null,299899,"NM_198751","RefSeq","Rattus norvegicus eukaryotic translation initiation factor 3, subunit H (Eif3h), mRNA.","chr6",100,100,"NM_198751","Q6P9U8","NM_198751","Rn.129213","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_198751","GO:0001731","formation of translation preinitiation complex","inferred from electronic annotation","NM_198751","GO:0005852","eukaryotic translation initiation factor 3 complex","inferred from electronic annotation","NM_198751","GO:0003743","translation initiation factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005786","Pfam","IPR000555","JAB1/MPN/MOV34 metalloenzyme domain","Coding",15.64,15.55,15.6,14.72,14.85,14.68]
["TC0100003231.rn.1",11.58,5.76,56.493,"up",2.57108463494133e-6,0.00011960351371738,"Ms4a6b","membrane-spanning 4-domains, subfamily A, member 6B","chr1","+","ENSRNOT00000032937","coding",227798223,227818291,108,"1q43",293750,"ENSRNOT00000032937","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:234871932:234881646:1 gene:ENSRNOG00000036627 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000032937","D3ZZ58",{"$nulls":7},"ENSRNOT00000032937","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000032937","Pfam","IPR007237","CD20-like","Coding",12.03,11.4,11.3,5.63,6.16,5.5]
["TC1400000789.rn.1",10.73,6.73,16,"up",2.59960626423268e-6,0.000120420694442629,"Man2b2","mannosidase, alpha, class 2B, member 2","chr14","+","NM_001134971","coding",78939959,78964961,234,"14q21",360955,"NM_001134971","RefSeq","Rattus norvegicus mannosidase, alpha, class 2B, member 2 (Man2b2), mRNA.","chr14",100,100,"NM_001134971","B5DEJ3","NM_001134971","Rn.139036","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| kidney| liver| lung| pancreas| pituitary gland| placenta| prostate| spleen| fetus| juvenile| adult","NM_001134971","GO:0006013","mannose metabolic process","inferred from direct assay","NM_001134971","GO:0005764","lysosome","inferred from direct assay","NM_001134971","GO:0004559","alpha-mannosidase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000064548","Pfam","IPR000602","Glycoside hydrolase family 38, N-terminal domain","Coding",10.65,10.38,11.16,6.79,6.77,6.62]
["TC0200004849.rn.1",11.83,10.33,2.828,"up",2.65578653373107e-6,0.000122695925205964,"Sh3glb1","SH3-domain GRB2-like endophilin B1","chr2","-","NM_001011929","coding",250709812,250744568,220,"2q44",292156,"NM_001011929","RefSeq","Rattus norvegicus SH3-domain GRB2-like endophilin B1 (Sh3glb1), mRNA.","chr2",100,100,"NM_001011929","Q6AYE2","NM_001011929","Rn.203013","brain| colon| connective tissue| dorsal root ganglion| heart| liver| lung| muscle| ovary| pancreas| placenta| spleen| testis| thymus| vibrissa|tailbud embryo| juvenile| adult","NM_001011929","GO:0006654","phosphatidic acid biosynthetic process","inferred from electronic annotation","NM_001011929","GO:0000139","Golgi membrane","inferred from electronic annotation","NM_001011929","GO:0005504","fatty acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017770","Pfam","IPR001452","SH3 domain","Coding",11.76,11.8,11.92,10.32,10.53,10.14]
["TC1600001549.rn.1",9.06,6.63,5.389,"up",2.72388649047488e-6,0.000125508308291881,"Hmgb2","high mobility group box 2","chr16","-","NM_017187","coding",36077615,36080284,140,"16p11",29395,"NM_017187","RefSeq","Rattus norvegicus high mobility group box 2 (Hmgb2), mRNA.","chr16",100,100,"NM_017187","P52925","NM_017187","Rn.2874","connective tissue| eye| kidney| liver| lung| pancreas| prostate| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_017187","GO:0001938","positive regulation of endothelial cell proliferation","not recorded","NM_017187","GO:0000793","condensed chromosome","not recorded","NM_017187","GO:0003677","DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000017635","Pfam","IPR009071","High mobility group box domain","Coding",9.14,8.93,9.11,6.57,6.83,6.48]
["TC0800000936.rn.1",8.68,4.46,18.636,"up",2.73515551185463e-6,0.000125694143905891,"Cilp","cartilage intermediate layer protein, nucleotide pyrophosphohydrolase","chr8","+","NM_001108161","coding",70760206,70775891,110,"8q24",315761,"NM_001108161","RefSeq","Rattus norvegicus cartilage intermediate layer protein, nucleotide pyrophosphohydrolase (Cilp), mRNA.","chr8",100,100,"NM_001108161","D3ZGB8","NM_001108161","Rn.163026","adipose tissue| connective tissue| muscle| placenta| prostate| adult","NM_001108161","GO:0043569","negative regulation of insulin-like growth factor receptor signaling pathway","inferred from electronic annotation","NM_001108161","GO:0005615","extracellular space","inferred from electronic annotation","NM_001108161","GO:0004035","alkaline phosphatase activity","not recorded",{"$nulls":3},"ENSRNOT00000044887","Pfam","IPR000884","Thrombospondin, type 1 repeat","Coding",8.53,8.56,8.94,4.43,4.57,4.39]
["TC1200001737.rn.1",13.98,11.63,5.098,"up",2.81958502166387e-6,0.000128710808385866,"Rplp0","ribosomal protein, large, P0","chr12","-","NM_022402","coding",46791345,46794909,89,"12q16",64205,"NM_022402","RefSeq","Rattus norvegicus ribosomal protein, large, P0 (Rplp0), mRNA.","chr12",100,100,"NM_022402","P19945","NM_022402","Rn.1079","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| nerve| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_022402","GO:0006414","translational elongation","inferred from electronic annotation","NM_022402","GO:0005634","nucleus","not recorded","NM_022402","GO:0003735","structural constituent of ribosome","inferred from electronic annotation","NM_022402","GenMAPP","Ribosomal_Proteins","ENSRNOT00000001518","Pfam","IPR001790","Ribosomal protein L10/acidic P0","Coding",13.89,13.84,14.21,11.83,11.78,11.28]
["TC0300004001.rn.1",8.26,7.17,2.129,"up",2.82552985432894e-6,0.000128710808385866,"LOC691532","similar to 40S ribosomal protein S25","chr3","-","mRNARGD2493633_1","coding",112099630,112100166,30,null,"NA","mRNARGD2493633_1","Rat Genome Database","similar to 40S ribosomal protein S25","chr3",100,100,{"$nulls":24},"Coding",8.2,8.31,8.27,7.07,7.35,7.1]
["TC0800001254.rn.1",10.12,6.88,9.448,"up",2.83043744190897e-6,0.000128710808385866,"Nt5e","ENCODES a protein that exhibits 5-nucleotidase activity AND  ferrous iron binding AND  INVOLVED IN adenosine metabolic process AND  AMP catabolic process AND  brain development AND  PARTICIPATES IN purine metabolic pathway AND  hypoxia inducible factor pathway AND  monoterpenoid biosynthetic pathway AND  ASSOCIATED WITH Brain Injuries AND  Diabetes Mellitus  Experimental AND  Status Epilepticus AND  FOUND IN cell surface AND  synaptic membrane AND  cytoplasm (ortholog) AND  INTERACTS WITH 3 3 4 4 5-pentachlorobiphenyl AND  3 3 5-triiodo-L-thyronine AND  copper atom","chr8","+","mRNARGD2408202_1","coding",95968652,96013579,125,null,"NA","mRNARGD2408202_1","Rat Genome Database","ENCODES a protein that exhibits 5-nucleotidase activity AND  ferrous iron binding AND  INVOLVED IN adenosine metabolic process AND  AMP catabolic process AND  brain development AND  PARTICIPATES IN purine metabolic pathway AND  hypoxia inducible factor pathway AND  monoterpenoid biosynthetic pathway AND  ASSOCIATED WITH Brain Injuries AND  Diabetes Mellitus  Experimental AND  Status Epilepticus AND  FOUND IN cell surface AND  synaptic membrane AND  cytoplasm (ortholog) AND  INTERACTS WITH 3 3 4 4 5-pentachlorobiphenyl AND  3 3 5-triiodo-L-thyronine AND  copper atom","chr8",100,100,{"$nulls":24},"Coding",9.93,9.85,10.59,6.79,6.99,6.85]
["TC1000000813.rn.1",11.75,5.78,62.683,"up",2.85459710305898e-6,0.000129470512473205,"Mfap4","microfibrillar-associated protein 4 (Mfap4), mRNA","chr10","+","NM_001034124_2","coding",49000922,49003935,80,null,"NA","NM_001034124_2","RefSeq","microfibrillar-associated protein 4 (Mfap4), mRNA","chr10",100,100,"ENSRNOT00000057880","D4A7W8",{"$nulls":18},"ENSRNOT00000057880","Pfam","IPR002181","Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain","Coding",11.65,11.72,11.88,6.21,5.81,5.32]
["TC0800003104.rn.1",5.8,8.77,-7.835,"down",2.90283678813485e-6,0.00013131556730909,"Ankrd34c","ankyrin repeat domain 34C","chr8","-","NM_001106845","coding",97105071,97115027,30,"8q31",300889,"NM_001106845","RefSeq","Rattus norvegicus ankyrin repeat domain 34C (Ankrd34c), mRNA.","chr8",100,100,"NM_001106845","D3ZI64","NM_001106845","Rn.218591",{"$nulls":9},"ENSRNOT00000018685","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018685","Pfam","IPR002110","Ankyrin repeat","Coding",6.06,5.66,5.68,8.54,8.91,8.87]
["TC2000001004.rn.1",14.38,10.06,19.973,"up",2.91250788840993e-6,0.000131410842933945,null,null,"chr20","-",null,"coding",2541022,2541440,30,null,"NA","ENSRNOT00000071931","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:4576104:4576522:-1 gene:ENSRNOG00000048140 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000071931","M0RBQ7",{"$nulls":11},"ENSRNOT00000071931","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000071931","Pfam","IPR003597","Immunoglobulin C1-set","Coding",14.14,14.02,14.98,9.93,10.64,9.61]
["TC2000001532.rn.1",11.57,7.9,12.729,"up",2.94230049845726e-6,0.000132156387053931,"Slc29a3","solute carrier family 29 (equilibrative nucleoside transporter), member 3","chr20","-","NM_181639","coding",30288642,30327343,70,"20q11",353307,"NM_181639","RefSeq","Rattus norvegicus solute carrier family 29 (equilibrative nucleoside transporter), member 3 (Slc29a3), mRNA.","chr20",100,100,"NM_181639","Q80WK7","NM_181639","Rn.15870","brain| colon| connective tissue| eye| lung| nerve| ovary| prostate| spleen| testis| fetus| juvenile| adult","NM_181639","GO:0015858","nucleoside transport","inferred from mutant phenotype","NM_181639","GO:0005765","lysosomal membrane","inferred from electronic annotation","NM_181639","GO:0005337","nucleoside transmembrane transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000689","Pfam","IPR002259","Equilibrative nucleoside transporter","Coding",11.6,11.22,11.89,7.89,8.19,7.61]
["TC0400000109.rn.1",6.55,7.52,-1.959,"down",2.94424741177084e-6,0.000132156387053931,"Fastk","Fas-activated serine/threonine kinase","chr4","+","ENSRNOT00000064893","coding",7260507,7264597,296,"4q11",296741,"ENSRNOT00000064893","ENSEMBL","ensembl:known chromosome:Rnor_5.0:4:7271939:7275953:1 gene:ENSRNOG00000011667 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000064893","Q5XIG7","ENSRNOT00000064893","Rn.7680","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| pituitary gland| placenta| prostate| spleen| testis| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000064893","GO:0006468","protein phosphorylation","inferred from electronic annotation","ENSRNOT00000064893","GO:0005739","mitochondrion","inferred from electronic annotation","ENSRNOT00000064893","GO:0004674","protein serine/threonine kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000064893","Pfam","IPR010622","FAST kinase leucine-rich","Coding",6.47,6.47,6.7,7.51,7.57,7.47]
["TC0400000906.rn.1",15.81,13.27,5.816,"up",2.95703057104852e-6,0.000132388087756917,"LOC681658","similar to CCAAT displacement protein isoform b","chr4","+","ENSRNOT00000072388","coding",80951561,80953284,40,null,681658,"ENSRNOT00000072388","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:145618623:145620206:1 gene:ENSRNOG00000051011 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000072388","M0R7U9",{"$nulls":3},"ENSRNOT00000072388","GO:0006891","intra-Golgi vesicle-mediated transport","inferred from electronic annotation","ENSRNOT00000072388","GO:0030173","integral component of Golgi membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000072388","Pfam","IPR012955","CASP, C-terminal","Coding",15.98,15.79,15.66,13.16,13.23,13.42]
["TC0200004440.rn.1",8.38,9.09,-1.636,"down",2.96552571874762e-6,0.000132427113779858,"Strip1","striatin interacting protein 1","chr2","-","ENSRNOT00000025036","coding",210393708,210413781,230,"2q34",362012,"ENSRNOT00000025036","ENSEMBL","ensembl:known chromosome:Rnor_5.0:2:229860322:229880245:-1 gene:ENSRNOG00000018293 gene_biotype:protein_coding transcript_biotype:protein_coding","chr2",100,100,"ENSRNOT00000025036","G3V8E2","ENSRNOT00000025036","Rn.136895","brain| connective tissue| embryonic tissue| eye| kidney| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","ENSRNOT00000025036","GO:0022604","regulation of cell morphogenesis","inferred from electronic annotation","ENSRNOT00000025036","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000025036","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025036","Pfam","IPR012486","N1221-like","Coding",8.36,8.34,8.45,9.11,9.13,9.04]
["TC0500000617.rn.1",5.2,6.93,-3.317,"down",2.99414760694421e-6,0.000133129109890052,"Nr4a3","nuclear receptor subfamily 4, group A, member 3","chr5","+","NM_031628","coding",63781739,63822890,150,"5q22",58853,"NM_031628","RefSeq","Rattus norvegicus nuclear receptor subfamily 4, group A, member 3 (Nr4a3), mRNA.","chr5",100,100,"NM_031628","P51179","NM_031628","Rn.62694","ovary| prostate| thymus| adult","NM_031628","GO:0001707","mesoderm formation","inferred from electronic annotation","NM_031628","GO:0005634","nucleus","inferred from electronic annotation","NM_031628","GO:0001077","RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008302","Pfam","IPR000536","Nuclear hormone receptor, ligand-binding, core","Coding",5.3,5.19,5.1,6.88,7.02,6.9]
["TC0100006263.rn.1",10.61,6.83,13.737,"up",3.00423758430144e-6,0.000133129109890052,"Trim5","tripartite motif-containing 5","chr1","-","NM_001014023","coding",169446774,169463767,122,"1q32",308906,"NM_001014023","RefSeq","Rattus norvegicus tripartite motif-containing 5 (Trim5), mRNA.","chr1",100,100,"NM_001014023","Q6AYT1","NM_001014023","Rn.12117","eye| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| thymus| juvenile| adult","NM_001014023","GO:0002218","activation of innate immune response","not recorded","NM_001014023","GO:0000932","cytoplasmic mRNA processing body","not recorded","NM_001014023","GO:0004842","ubiquitin-protein transferase activity","not recorded",{"$nulls":3},"ENSRNOT00000023100","Pfam","IPR000315","Zinc finger, B-box","Coding",10.51,10.58,10.74,6.8,7.07,6.61]
["TC0800002650.rn.1",10.07,5.22,28.84,"up",3.0313963640558e-6,0.000133990804681968,"Loxl1","lysyl oxidase-like 1","chr8","-","NM_001012125","coding",63067756,63092966,104,"8q24",315714,"NM_001012125","RefSeq","Rattus norvegicus lysyl oxidase-like 1 (Loxl1), mRNA.","chr8",100,100,"NM_001012125","Q5FWS5","NM_001012125","Rn.770","brain| connective tissue| eye| heart| kidney| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| vibrissa|tailbud embryo| fetus| juvenile| adult","NM_001012125","GO:0032496","response to lipopolysaccharide","inferred from expression pattern","NM_001012125","GO:0001669","acrosomal vesicle","inferred from direct assay","NM_001012125","GO:0005507","copper ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000034300","Pfam","IPR001695","Lysyl oxidase","Coding",10.03,10.03,10.15,5.07,5.48,5.12]
["TC0200004660.rn.1",9.25,10.07,-1.765,"down",3.06144550023719e-6,0.000134633847556001,"Ap1ar","adaptor-related protein complex 1 associated regulatory protein","chr2","-","NM_001191850","coding",232146418,232178789,149,"2q42",362037,"NM_001191850","RefSeq","Rattus norvegicus adaptor-related protein complex 1 associated regulatory protein (Ap1ar), mRNA.","chr2",100,100,"NM_001191850","F1M9P0","NM_001191850","Rn.1713","brain| colon| connective tissue| dorsal root ganglion| heart| lung| ovary| placenta| prostate| testis| thymus|tailbud embryo| juvenile| adult","NM_001191850","GO:0001920","negative regulation of receptor recycling","inferred from electronic annotation","NM_001191850","GO:0005730","nucleolus","inferred from electronic annotation","NM_001191850","GO:0019894","kinesin binding","inferred from electronic annotation",{"$nulls":7},"Coding",9.3,9.19,9.25,10.12,9.97,10.13]
["TC1700001189.rn.1",14.32,11.35,7.835,"up",3.08271631351826e-6,0.000134929958506826,"Ctsl","cathepsin L","chr17","-","NM_013156","coding",1872488,1879403,160,"17p14",25697,"NM_013156","RefSeq","Rattus norvegicus cathepsin L (Ctsl), mRNA.","chr17",100,100,"NM_013156","P07154","NM_013156","Rn.1294","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_013156","GO:0002250","adaptive immune response","not recorded","NM_013156","GO:0005576","extracellular region","inferred from electronic annotation","NM_013156","GO:0001968","fibronectin binding","not recorded",{"$nulls":3},"ENSRNOT00000025462","Pfam","IPR000668","Peptidase C1A, papain C-terminal","Coding",14.61,14.08,14.28,11.3,11.46,11.29]
["TC0700002464.rn.1",10.47,8.3,4.5,"up",3.09109522112596e-6,0.000134929958506826,"Tmpo","thymopoietin","chr7","-","NM_012887","coding",31847413,31872371,159,"7q13",25359,"NM_012887","RefSeq","Rattus norvegicus thymopoietin (Tmpo), mRNA.","chr7",100,100,"NM_012887","Q62733","NM_012887","Rn.202955","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_012887","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","NM_012887","GO:0000785","chromatin","inferred from electronic annotation","NM_012887","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012715","Pfam","IPR003887","LEM domain","Coding",10.39,10.35,10.67,8.21,8.34,8.34]
["TC0500003846.rn.1",10.42,8.89,2.888,"up",3.09148140496902e-6,0.000134929958506826,"Pnrc2","proline-rich nuclear receptor coactivator 2","chr5","-","NM_001103360","coding",154220171,154223788,83,null,100125373,"NM_001103360","RefSeq","Rattus norvegicus proline-rich nuclear receptor coactivator 2 (Pnrc2), mRNA.","chr5",100,100,"NM_001103360","Q66HE1","NM_001103360","Rn.118788","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001103360","GO:0000184","nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","not recorded","NM_001103360","GO:0000932","cytoplasmic mRNA processing body","not recorded",{"$nulls":11},"Coding",10.62,10.33,10.31,8.88,8.97,8.81]
["TC0400000484.rn.1",14.51,12.55,3.891,"up",3.10703762648053e-6,0.00013526904914685,"LOC100909821","thymosin beta-10-like","chr4","+","mRNARGD6501652_1","coding",51760990,51761121,30,null,"NA","mRNARGD6501652_1","Rat Genome Database","thymosin beta-10-like","chr4",100,100,{"$nulls":24},"Coding",14.66,14.5,14.37,12.5,12.37,12.79]
["TC1300001374.rn.1",11.77,9.07,6.498,"up",3.14683822047352e-6,0.000136318520518318,"Mapkapk2","mitogen-activated protein kinase-activated protein kinase 2","chr13","-","NM_178102","coding",47785161,47871684,126,"13q13",289014,"NM_178102","RefSeq","Rattus norvegicus mitogen-activated protein kinase-activated protein kinase 2 (Mapkapk2), mRNA.","chr13",100,100,"NM_178102","F1M9C0","NM_178102","Rn.6276","adipose tissue| brain| connective tissue| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_178102","GO:0002224","toll-like receptor signaling pathway","inferred from electronic annotation","NM_178102","GO:0005634","nucleus","inferred from electronic annotation","NM_178102","GO:0004674","protein serine/threonine kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000061070","Pfam","IPR000719","Protein kinase domain","Coding",11.82,11.58,11.91,9.03,9.03,9.16]
["TC0400003965.rn.1",11.48,4.47,128.89,"up",3.17892049103183e-6,0.000137024883001771,"Plbd1","phospholipase B domain containing 1","chr4","-","NM_001013927","coding",170564386,170621495,154,"4q43",297694,"NM_001013927","RefSeq","Rattus norvegicus phospholipase B domain containing 1 (Plbd1), mRNA.","chr4",100,100,"NM_001013927","Q5U2V4","NM_001013927","Rn.3413","adipose tissue| connective tissue| dorsal root ganglion| eye| heart| liver| lung| muscle| ovary| placenta| spleen| testis| juvenile| adult","NM_001013927","GO:0016042","lipid catabolic process","inferred from electronic annotation","NM_001013927","GO:0005764","lysosome","inferred from electronic annotation","NM_001013927","GO:0016787","hydrolase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000011930","Pfam","IPR007000","Phospholipase B-like","Coding",12.46,11.02,10.96,4.34,4.24,4.83]
["TC0200000168.rn.1",13.35,11.12,4.691,"up",3.21538994995446e-6,0.000138158155973342,"Arsb","arylsulfatase B","chr2","+","NM_033443","coding",23384379,23544964,165,"2q12",25227,"NM_033443","RefSeq","Rattus norvegicus arylsulfatase B (Arsb), mRNA.","chr2",100,100,"NM_033443","P50430","NM_033443","Rn.94004","brain| colon| connective tissue| eye| heart| kidney| liver| lung| nerve| ovary| pancreas| pituitary gland| placenta| prostate| spleen| fetus| juvenile| adult","NM_033443","GO:0006914","autophagy","inferred from direct assay","NM_033443","GO:0005739","mitochondrion","inferred from direct assay","NM_033443","GO:0003943","N-acetylgalactosamine-4-sulfatase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000014860","Pfam","IPR000917","Sulfatase","Coding",13.45,13.1,13.49,11.02,11.36,10.99]
["TC0200002509.rn.1",8.9,9.88,-1.972,"down",3.22111871332701e-6,0.000138158155973342,"Nr2f1","nuclear receptor subfamily 2, group F, member 1","chr2","-","NM_031130","coding",5569956,5579894,90,"2q11",81808,"NM_031130","RefSeq","Rattus norvegicus nuclear receptor subfamily 2, group F, member 1 (Nr2f1), mRNA.","chr2",100,100,"NM_031130","F2Z3S9","NM_031130","Rn.89710","brain| dorsal root ganglion| heart| lung| ovary| spleen|tailbud embryo| fetus| juvenile| adult","NM_031130","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_031130","GO:0005634","nucleus","inferred from electronic annotation","NM_031130","GO:0003700","sequence-specific DNA binding transcription factor activity","not recorded","NM_031130","GenMAPP","Nuclear_Receptors","ENSRNOT00000020044","Pfam","IPR000536","Nuclear hormone receptor, ligand-binding, core","Coding",8.86,8.91,8.94,9.87,9.76,10.01]
["TC0100001892.rn.1",11.45,8.83,6.148,"up",3.23333424919575e-6,0.000138340515376304,"Tm6sf1","transmembrane 6 superfamily member 1","chr1","+","NM_001108490","coding",143657607,143704690,140,"1q31",361600,"NM_001108490","RefSeq","Rattus norvegicus transmembrane 6 superfamily member 1 (Tm6sf1), mRNA.","chr1",100,100,"NM_001108490","D4A3E7","NM_001108490","Rn.219352","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| kidney| lung| placenta| prostate| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_001108490","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000063873","Pfam","IPR016964","Transmembrane protein 6/97","Coding",11.33,11.27,11.75,8.81,9.07,8.6]
["TC0400000422.rn.1",11.04,7.72,9.987,"up",3.24629642002827e-6,0.000138553845484794,"Tes","testis derived transcript","chr4","+","NM_001039344","coding",44321716,44360410,100,"4q21",500040,"NM_001039344","RefSeq","Rattus norvegicus testis derived transcript (Tes), mRNA.","chr4",100,100,"NM_001039344","Q2LAP6","NM_001039344","Rn.44847","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001039344","GO:0008285","negative regulation of cell proliferation","not recorded","NM_001039344","GO:0005634","nucleus","not recorded","NM_001039344","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000049102","Pfam","IPR001781","Zinc finger, LIM-type","Coding",11.12,10.88,11.13,7.9,7.99,7.26]
["TC0400001068.rn.1",6.82,7.43,-1.526,"down",3.3339929561263e-6,0.000140569882623471,"Prdm5","PR domain containing 5","chr4","+","ENSRNOT00000009569","coding",96659042,96810109,171,"4q31",689788,"ENSRNOT00000009569","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:161443647:161572269:1 gene:ENSRNOG00000023679 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000009569","D3ZRZ9",{"$nulls":3},"ENSRNOT00000009569","GO:0000278","mitotic cell cycle","inferred from electronic annotation","ENSRNOT00000009569","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000009569","GO:0000976","transcription regulatory region sequence-specific DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009569","Pfam","IPR007087","Zinc finger, C2H2","Coding",6.79,6.85,6.81,7.46,7.46,7.38]
["TC0500002620.rn.1",9.79,6.38,10.629,"up",3.35201825587365e-6,0.000140987673420778,"Tln1","talin 1","chr5","-","NM_001039025","coding",59032816,59064612,760,"5q22",313494,"NM_001039025","RefSeq","Rattus norvegicus talin 1 (Tln1), mRNA.","chr5",100,100,"NM_001039025","G3V852","NM_001039025","Rn.7715","adipose tissue| brain| colon| connective tissue| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001039025","GO:0007016","cytoskeletal anchoring at plasma membrane","inferred from electronic annotation","NM_001039025","GO:0001726","ruffle","inferred from electronic annotation","NM_001039025","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022400","Pfam","IPR002404","Insulin receptor substrate-1, PTB","Coding",9.76,9.68,9.93,6.31,6.49,6.34]
["TC0400001908.rn.1",6.07,7.52,-2.732,"down",3.39057024987887e-6,0.000141580759160206,"LOC100360120","hypothetical protein LOC100360120","chr4","+","ENSRNOT00000075273","coding",167219585,167317545,70,null,100360120,"ENSRNOT00000075273","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:4:229747953:229749357:1 gene:ENSRNOG00000047309 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000075273","M0R8T4","ENSRNOT00000075273","Rn.1750","brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| lung| muscle| pancreas| pituitary gland| placenta| prostate| small intestine| fetus| juvenile| adult",{"$nulls":19},"Coding",6.15,5.9,6.17,7.44,7.69,7.42]
["TC0800002684.rn.1",10.49,11.89,-2.639,"down",3.4060083909877e-6,0.000141884344747835,"Lrrc49","leucine rich repeat containing 49","chr8","-","NM_001134469","coding",65481584,65588525,236,"8q24",300763,"NM_001134469","RefSeq","Rattus norvegicus leucine rich repeat containing 49 (Lrrc49), mRNA.","chr8",100,100,"NM_001134469","B1H239","NM_001134469","Rn.26984","adipose tissue| brain| dorsal root ganglion| lung| ovary| pituitary gland| prostate| testis|tailbud embryo| metamorphosing embryo| juvenile| adult",{"$nulls":8},"ENSRNOT00000016491","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016491","Pfam","IPR001611","Leucine-rich repeat","Coding",10.52,10.54,10.42,11.83,12.03,11.8]
["TC0800000915.rn.1",10.35,11.59,-2.362,"down",3.44852084374683e-6,0.000143311616212264,"Snapc5","small nuclear RNA activating complex, polypeptide 5","chr8","+","NM_001109643","coding",69127703,69132608,45,"8q24",691501,"NM_001109643","RefSeq","Rattus norvegicus small nuclear RNA activating complex, polypeptide 5 (Snapc5), mRNA.","chr8",100,100,"NM_001109643","D3ZTK9","NM_001109643","Rn.47597","adipose tissue| brain| connective tissue| dorsal root ganglion| liver| metamorphosing embryo| juvenile| adult","NM_001109643","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","NM_001109643","GO:0005634","nucleus","inferred from electronic annotation","NM_001109643","GO:0003700","sequence-specific DNA binding transcription factor activity","inferred from electronic annotation",{"$nulls":7},"Coding",10.36,10.25,10.43,11.52,11.59,11.65]
["TC0200002732.rn.1",8.5,4.87,12.381,"up",3.46883679942985e-6,0.000143469438197371,"Naip5","NLR family, apoptosis inhibitory protein 5","chr2","-","ENSRNOT00000024485","coding",30415601,30478866,240,"2q12",294691,"ENSRNOT00000024485","ENSEMBL","ensembl:known chromosome:Rnor_5.0:2:49588625:49617763:-1 gene:ENSRNOG00000042256 gene_biotype:protein_coding transcript_biotype:protein_coding","chr2",100,100,"ENSRNOT00000024485","D3ZEZ4","ENSRNOT00000024485","Rn.101687","colon| fetus","ENSRNOT00000024485","GO:0006952","defense response","inferred from electronic annotation","ENSRNOT00000024485","GO:0005737","cytoplasm","inferred from sequence or structural similarity","ENSRNOT00000024485","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024485","Pfam","IPR001370","Baculoviral inhibition of apoptosis protein repeat","Coding",8.45,8.6,8.45,4.74,4.82,5.04]
["TC0200003772.rn.1",9.15,5.47,12.817,"up",3.50416495579097e-6,0.000144586340729323,"LOC102554277","dedicator of cytokinesis protein 2-like","chr2","-","mRNARGD7700280_1","coding",152708216,152709458,40,null,"NA","mRNARGD7700280_1","Rat Genome Database","dedicator of cytokinesis protein 2-like","chr2",100,100,"ENSRNOT00000073900","M0RDC1",{"$nulls":3},"ENSRNOT00000073900","GO:0007264","small GTPase mediated signal transduction","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000073900","GO:0005085","guanyl-nucleotide exchange factor activity","inferred from electronic annotation",{"$nulls":7},"Coding",9.11,9.02,9.32,5.25,5.66,5.49]
["TC1000003807.rn.1",13.88,12.78,2.144,"up",3.52302087419582e-6,0.000145019894800132,"Rab5c","RAB5C, member RAS oncogene family","chr10","-","NM_001105840","coding",88620643,88645370,80,"10q32.1",287709,"NM_001105840","RefSeq","Rattus norvegicus RAB5C, member RAS oncogene family (Rab5c), mRNA.","chr10",100,100,"NM_001105840","B0BNK1","NM_001105840","Rn.3548","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| placenta| prostate| small intestine| spleen| testis| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_001105840","GO:0007032","endosome organization","inferred from electronic annotation","NM_001105840","GO:0005765","lysosomal membrane","inferred from electronic annotation","NM_001105840","GO:0005525","GTP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000030344","Pfam","IPR000795","Elongation factor, GTP-binding domain","Coding",13.95,13.81,13.89,12.91,12.81,12.62]
["TC0100003832.rn.1",13.04,12.15,1.853,"up",3.58283621849164e-6,0.00014713344669366,"Pdcd4","programmed cell death 4","chr1","+","NM_022265","coding",274609611,274648218,260,"1q55",64031,"NM_022265","RefSeq","Rattus norvegicus programmed cell death 4 (Pdcd4), mRNA.","chr1",100,100,"NM_022265","Q9JID1","NM_022265","Rn.122017","adipose tissue| brain| colon| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_022265","GO:0006915","apoptotic process","inferred from electronic annotation","NM_022265","GO:0005634","nucleus","not recorded","NM_022265","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000020155","Pfam","IPR003891","Initiation factor eIF-4 gamma, MA3","Coding",13.04,13.04,13.04,12.15,12.17,12.14]
["TC0400002453.rn.1",13.29,11.42,3.655,"up",3.60773160343051e-6,0.000147458601607509,"Rps4x-ps9","ribosomal protein S4, X-linked","chr4","-","ENSRNOT00000051149","coding",35729607,35730539,23,null,29426,"ENSRNOT00000051149","ENSEMBL","ensembl:known chromosome:Rnor_5.0:4:35587341:35588132:-1 gene:ENSRNOG00000029574 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000051149","P62703","ENSRNOT00000051149","Rn.40171","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000051149","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000051149","GO:0005840","ribosome","inferred from sequence or structural similarity","ENSRNOT00000051149","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051149","Pfam","IPR002942","RNA-binding S4 domain","Coding",13.29,13.21,13.37,11.61,11.47,11.18]
["TC0300000113.rn.1",15.19,14.39,1.741,"up",3.72116492302644e-6,0.000151737924595991,"LOC100360449","similar to 60S ribosomal protein L9","chr3","+","ENSRNOT00000042201","coding",4282200,4282935,30,"2q24",310284,"ENSRNOT00000042201","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:9640913:9641604:1 gene:ENSRNOG00000030476 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000042201","P17077","ENSRNOT00000042201","Rn.107914","adrenal gland| brain| dorsal root ganglion| embryonic tissue| eye| heart| lung| ovary| pancreas| pituitary gland| spleen| vibrissa| metamorphosing embryo| juvenile| adult","ENSRNOT00000042201","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000042201","GO:0005634","nucleus","not recorded","ENSRNOT00000042201","GO:0003735","structural constituent of ribosome","inferred from electronic annotation","ENSRNOT00000042201","GenMAPP","Ribosomal_Proteins","ENSRNOT00000042201","Pfam","IPR020040","Ribosomal protein L6, alpha-beta domain","Coding",15.12,15.18,15.26,14.42,14.44,14.32]
["TC1400001203.rn.1",12.07,10.47,3.031,"up",3.76288464707006e-6,0.000152423212439158,"Psme4","proteasome (prosome, macropain) activator subunit 4","chr14","+","NM_001025140","coding",115166165,115269041,528,"14q22",498433,"NM_001025140","RefSeq","Rattus norvegicus proteasome (prosome, macropain) activator subunit 4 (Psme4), mRNA.","chr14",100,100,"NM_001025140","F1LS68","NM_001025140","Rn.163607","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pituitary gland| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001025140","GO:0006281","DNA repair","inferred from electronic annotation","NM_001025140","GO:0005634","nucleus","inferred from electronic annotation","NM_001025140","GO:0016504","peptidase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009500","Pfam","IPR000357","HEAT","Coding",12.25,12.06,11.9,10.45,10.3,10.66]
["TC0400002412.rn.1",9.34,6.55,6.916,"up",3.77306898559886e-6,0.000152423212439158,"Slc25a13","solute carrier family 25 (aspartate/glutamate carrier), member 13","chr4","-","ENSRNOT00000013817","coding",31134164,31756998,266,"4q13",362322,"ENSRNOT00000013817","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:4:31041996:31598338:-1 gene:ENSRNOG00000009957 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000013817","F1LZW6",{"$nulls":3},"ENSRNOT00000013817","GO:0006754","ATP biosynthetic process","inferred from electronic annotation","ENSRNOT00000013817","GO:0005739","mitochondrion","not recorded","ENSRNOT00000013817","GO:0005313","L-glutamate transmembrane transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000013817","Pfam","IPR018108","Mitochondrial substrate/solute carrier","Coding",9.24,9.11,9.66,6.65,6.57,6.42]
["TC0900002707.rn.1",10.34,6.19,17.753,"up",3.81484620727614e-6,0.000153588453873861,"Sp100","SP100 nuclear antigen","chr9","+","NM_001014220","coding",92675021,92748918,382,"9q35",363269,"NM_001014220","RefSeq","Rattus norvegicus SP100 nuclear antigen (Sp100), mRNA.","chr9",100,100,"NM_001014220","Q5XI80","NM_001014220","Rn.15232","adipose tissue| connective tissue| kidney| lung| muscle| pancreas| prostate| spleen| juvenile| adult","NM_001014220","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_001014220","GO:0005634","nucleus","not recorded","NM_001014220","GO:0003713","transcription coactivator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000034152","Pfam","IPR004865","Sp100","Coding",10.27,10.13,10.61,6.04,6.45,6.08]
["TC1300000748.rn.1",10.17,4.21,62.25,"up",3.85377947236722e-6,0.000154426341529859,"Fcgr3a","Fc fragment of IgG, low affinity IIIa, receptor","chr13","+","NM_207603","coding",89385983,89396047,48,"13q24",304966,"NM_207603","RefSeq","Rattus norvegicus Fc fragment of IgG, low affinity IIIa, receptor (Fcgr3a), mRNA.","chr13",100,100,"NM_207603","Q6XPU4","NM_207603","Rn.23977","connective tissue| dorsal root ganglion| heart| lung| ovary| pituitary gland| placenta| juvenile| adult","NM_207603","GO:0001866","NK T cell proliferation","inferred from direct assay","NM_207603","GO:0009897","external side of plasma membrane","not recorded","NM_207603","GO:0019864","IgG binding","traceable author statement",{"$nulls":3},"ENSRNOT00000047434","Pfam","IPR013151","Immunoglobulin","Coding",10.09,9.29,11.14,4.42,4.23,3.99]
["TC1200001269.rn.1",10.51,5.22,39.124,"up",3.85821381750957e-6,0.000154426341529859,"LOC680910","similar to paired immunoglobin-like type 2 receptor beta","chr12","-","ENSRNOT00000074057","coding",20480095,20486792,67,"12q11",360777,"ENSRNOT00000074057","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:22530603:22533727:-1 gene:ENSRNOG00000048881 gene_biotype:protein_coding transcript_biotype:protein_coding","chr12",100,100,"ENSRNOT00000074057","M0RCW7",{"$nulls":18},"ENSRNOT00000074057","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",11.34,10.38,9.82,5.23,5.24,5.19]
["TC0400000286.rn.1",10.4,13.11,-6.543,"down",3.88219011883762e-6,0.000154673221454881,"Cyp51","cytochrome P450, family 51","chr4","+","NM_012941","coding",27175243,27194082,140,"4q13",25427,"NM_012941","RefSeq","Rattus norvegicus cytochrome P450, family 51 (Cyp51), mRNA.","chr4",100,100,"NM_012941","Q64654","NM_012941","Rn.107152","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| nerve| ovary| pancreas| pituitary gland| prostate| small intestine| spleen| testis| thymus| metamorphosing embryo| juvenile| adult","NM_012941","GO:0006694","steroid biosynthetic process","not recorded","NM_012941","GO:0005783","endoplasmic reticulum","not recorded","NM_012941","GO:0005506","iron ion binding","inferred from electronic annotation","NM_012941","GenMAPP","Cholesterol_Biosynthesis","ENSRNOT00000009985","Pfam","IPR001128","Cytochrome P450","Coding",10.4,10.32,10.48,13.13,13.27,12.93]
["TC0200002645.rn.1",5.93,9.27,-10.126,"down",3.92627254831475e-6,0.000156071579946855,"Crhbp","corticotropin releasing hormone binding protein","chr2","-","NM_139183","coding",25141471,25153334,70,"2q12",29625,"NM_139183","RefSeq","Rattus norvegicus corticotropin releasing hormone binding protein (Crhbp), mRNA.","chr2",100,100,"NM_139183","O35761","NM_139183","Rn.34568","dorsal root ganglion| adult","NM_139183","GO:0001963","synaptic transmission, dopaminergic","inferred from electronic annotation","NM_139183","GO:0005615","extracellular space","inferred from direct assay","NM_139183","GO:0042277","peptide binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000024191","Pfam","IPR008435","Corticotropin-releasing factor binding","Coding",6.05,5.91,5.83,9.27,9.21,9.33]
["TC1200001083.rn.1",8.22,5.4,7.062,"up",4.03855105655016e-6,0.000159135019957573,"Arpc1b","actin related protein 2/3 complex, subunit 1B","chr12","-","NM_019289","coding",11249866,11265849,200,"12p11",54227,"NM_019289","RefSeq","Rattus norvegicus actin related protein 2/3 complex, subunit 1B (Arpc1b), mRNA.","chr12",100,100,"NM_019289","O88656","NM_019289","Rn.2090","adipose tissue| adrenal gland| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| placenta| prostate| spleen| thymus| juvenile| adult","NM_019289","GO:0030833","regulation of actin filament polymerization","inferred from electronic annotation","NM_019289","GO:0005737","cytoplasm","inferred from electronic annotation","NM_019289","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000001315","Pfam","IPR001680","WD40 repeat","Coding",8.25,8.01,8.41,5.58,5.33,5.29]
["TC0100003996.rn.1",9.78,4.6,36.252,"up",4.07100310525323e-6,0.000159135019957573,"Rab32","RAB32, member RAS oncogene family","chr1","-","NM_001108902","coding",4637500,4653244,66,"1p13",365042,"NM_001108902","RefSeq","Rattus norvegicus RAB32, member RAS oncogene family (Rab32), mRNA.","chr1",100,100,"NM_001108902","D4AEG2","NM_001108902","Rn.167294","heart| kidney| liver| placenta| prostate| juvenile| adult","NM_001108902","GO:0007264","small GTPase mediated signal transduction","inferred from electronic annotation","NM_001108902","GO:0005739","mitochondrion","inferred from electronic annotation","NM_001108902","GO:0005525","GTP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019121","Pfam","IPR001806","Small GTPase superfamily","Coding",9.94,9.51,9.89,4.81,4.07,4.93]
["TC1000002014.rn.1",10.51,6.93,11.959,"up",4.09082333527946e-6,0.000159135019957573,"Syngr2","synaptogyrin 2","chr10","+","NM_053553","coding",106812733,106817267,50,null,89815,"NM_053553","RefSeq","Rattus norvegicus synaptogyrin 2 (Syngr2), mRNA.","chr10",100,100,"NM_053553","O54980","NM_053553","Rn.34912","brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| placenta| prostate| spleen| testis| thymus| juvenile| adult","NM_053553","GO:0006605","protein targeting","inferred from direct assay","NM_053553","GO:0008021","synaptic vesicle","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000074225","Pfam","IPR008253","Marvel domain","Coding",10.31,10.15,11.08,7.04,7.02,6.74]
["TC0400001683.rn.1",9.32,6.91,5.315,"up",4.09962921872968e-6,0.000159135019957573,"Il17ra","interleukin 17 receptor A","chr4","+","NM_001107883","coding",152995865,153018531,141,"4q42",312679,"NM_001107883","RefSeq","Rattus norvegicus interleukin 17 receptor A (Il17ra), mRNA.","chr4",100,100,"NM_001107883","D4A740","NM_001107883","Rn.106209","brain| connective tissue| embryonic tissue| kidney| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_001107883","GO:0032747","positive regulation of interleukin-23 production","inferred from electronic annotation","NM_001107883","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001107883","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000014885","Pfam","IPR013568","SEFIR","Coding",9.25,9.13,9.58,6.92,6.98,6.83]
["TC0700001184.rn.1",6.11,7.13,-2.028,"down",4.10130905484629e-6,0.000159135019957573,"Trib1","tribbles pseudokinase 1","chr7","+","NM_023985","coding",99954213,99962613,80,"7q33",78969,"NM_023985","RefSeq","Rattus norvegicus tribbles pseudokinase 1 (Trib1), mRNA.","chr7",100,100,"NM_023985","G3V6J8","NM_023985","Rn.204391","eye| pineal gland| placenta| prostate| spleen| juvenile| adult","NM_023985","GO:0006468","protein phosphorylation","inferred from electronic annotation","NM_023985","GO:0005634","nucleus","inferred from electronic annotation","NM_023985","GO:0004672","protein kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005885","Pfam","IPR000719","Protein kinase domain","Coding",5.95,6.15,6.22,7.04,7.23,7.11]
["TC0400000004.rn.1",6.89,9.46,-5.938,"down",4.11053542551029e-6,0.000159135019957573,"Insig1","insulin induced gene 1","chr4","+","NM_022392","coding",342169,350732,128,"4q11",64194,"NM_022392","RefSeq","Rattus norvegicus insulin induced gene 1 (Insig1), mRNA.","chr4",100,100,"NM_022392","Q08755","NM_022392","Rn.772","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_022392","GO:0006641","triglyceride metabolic process","not recorded","NM_022392","GO:0005783","endoplasmic reticulum","not recorded","NM_022392","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000009233","Pfam","IPR025929","Insulin-induced protein family","Coding",7.12,6.63,6.91,9.7,9.56,9.13]
["TC1000004344.rn.1",14.33,12.95,2.603,"up",4.11327062120489e-6,0.000159135019957573,"Rnf130","goliath","chr10","+","NM_001037658","coding",35537976,35610729,91,null,652955,"NM_001037658","RefSeq","Rattus norvegicus goliath (LOC652955), mRNA.","chr10",100,100,"NM_001037658","Q6Y290","NM_001037658","Rn.186211","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| thymus| juvenile| adult","NM_001037658","GO:0006915","apoptotic process","inferred from electronic annotation","NM_001037658","GO:0005737","cytoplasm","inferred from sequence or structural similarity","NM_001037658","GO:0004842","ubiquitin-protein transferase activity","inferred from sequence or structural similarity",{"$nulls":3},"ENSRNOT00000071917","Pfam","IPR003137","Protease-associated domain, PA","Coding",14.38,14.17,14.44,12.96,12.96,12.92]
["TC1300001381.rn.1",11.88,9.81,4.199,"up",4.16219151206157e-6,0.000159958913177039,"Srgap2","SLIT-ROBO Rho GTPase activating protein 2","chr13","-","NM_001134958","coding",48065267,48286894,325,"13q13",360840,"NM_001134958","RefSeq","Rattus norvegicus SLIT-ROBO Rho GTPase activating protein 2 (Srgap2), mRNA.","chr13",100,100,"NM_001134958","B5DEJ1","NM_001134958","Rn.12700","adipose tissue| brain| connective tissue| heart| kidney| liver| nerve| pituitary gland| placenta| prostate| spleen| metamorphosing embryo| juvenile| adult","NM_001134958","GO:0003363","lamellipodium assembly involved in ameboidal cell migration","not recorded","NM_001134958","GO:0005634","nucleus","inferred from direct assay","NM_001134958","GO:0030675","Rac GTPase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008976","Pfam","IPR000198","Rho GTPase-activating protein domain","Coding",11.67,11.67,12.31,9.79,9.83,9.81]
["TC0100003216.rn.1",11.04,5.11,60.969,"up",4.19324539420981e-6,0.000160757546743082,"Ms4a6bl","membrane-spanning 4-domains, subfamily A, member 6B-like","chr1","+","NM_001006975","coding",227240417,227254198,80,"1q43",293749,"NM_001006975","RefSeq","Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 6B-like (Ms4a6bl), mRNA.","chr1",100,100,"NM_001006975","Q5XIJ0","NM_001006975","Rn.17885","adipose tissue| connective tissue| dorsal root ganglion| heart| placenta| prostate| spleen| thymus| adult",{"$nulls":4},"NM_001006975","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000074127","Pfam","IPR007237","CD20-like","Coding",11.67,10.78,10.67,5.17,5.18,4.97]
["TC1300001465.rn.1",10.37,11.63,-2.395,"down",4.23696737401006e-6,0.00016170556877509,"Ipo9","importin 9","chr13","-","NM_001107180","coding",52203381,52256254,390,"13q13",304817,"NM_001107180","RefSeq","Rattus norvegicus importin 9 (Ipo9), mRNA.","chr13",100,100,"NM_001107180","D4A857","NM_001107180","Rn.198415","brain| colon| embryonic tissue| eye| heart| kidney| liver| lung| pineal gland| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001107180","GO:0006606","protein import into nucleus","inferred from electronic annotation","NM_001107180","GO:0005634","nucleus","inferred from electronic annotation","NM_001107180","GO:0008536","Ran GTPase binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000011105","Pfam","IPR001494","Importin-beta, N-terminal domain","Coding",10.34,10.26,10.51,11.59,11.68,11.62]
["TC0500001544.rn.1",14.78,13.99,1.729,"up",4.26699997189063e-6,0.000162192683833068,"Ptp4a2","protein tyrosine phosphatase type IVA, member 2","chr5","+","NM_053475","coding",148032624,148060751,107,null,85237,"NM_053475","RefSeq","Rattus norvegicus protein tyrosine phosphatase type IVA, member 2 (Ptp4a2), mRNA.","chr5",100,100,"NM_053475","Q6P9X4","NM_053475","Rn.167750","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_053475","GO:0035335","peptidyl-tyrosine dephosphorylation","inferred from electronic annotation","NM_053475","GO:0005737","cytoplasm","not recorded","NM_053475","GO:0004725","protein tyrosine phosphatase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000074415","Pfam","IPR000242","Protein-tyrosine phosphatase, receptor/non-receptor type","Coding",14.81,14.78,14.75,13.94,14.02,14.02]
["TC0700001969.rn.1",12.67,8.83,14.32,"up",4.28424187586739e-6,0.000162492501366141,"LOC100911319","zinc finger protein 36, C3H1 type-like 2-like","chr7","-","ENSRNOT00000074873","coding",2350068,2354108,40,null,100911319,"ENSRNOT00000074873","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:2329849:2331791:-1 gene:ENSRNOG00000050108 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000074873","M0RBK3",{"$nulls":11},"ENSRNOT00000074873","GO:0046872","metal ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000074873","Pfam","IPR000571","Zinc finger, CCCH-type","Coding",12.31,12.59,13.12,9.15,8.94,8.4]
["TC2000000217.rn.1",10.91,9.58,2.514,"up",4.31240298112684e-6,0.000162849461272075,"Rps18","ribosomal protein S18","chr20","+","NM_213557","coding",5441814,5445553,80,"20p12",294282,"NM_213557","RefSeq","Rattus norvegicus ribosomal protein S18 (Rps18), mRNA.","chr20",100,100,"NM_213557","P62271","NM_213557","Rn.42766","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| prostate| spleen| vibrissa| juvenile| adult","NM_213557","GO:0006412","translation","not recorded","NM_213557","GO:0015935","small ribosomal subunit","traceable author statement","NM_213557","GO:0003735","structural constituent of ribosome","not recorded",{"$nulls":3},"ENSRNOT00000037499","Pfam","IPR001892","Ribosomal protein S13","Coding",10.91,10.86,10.97,9.78,9.64,9.31]
["TC0X00002618.rn.1",17.39,16,2.621,"up",4.34402942924955e-6,0.000163320082800204,"LOC100911991","eukaryotic translation elongation factor 1 alpha 1-like","chrX","-","ENSRNOT00000073674","coding",154916254,154917998,30,null,100360413,"ENSRNOT00000073674","ENSEMBL","ensembl:known chromosome:Rnor_5.0:1:150632250:150633638:-1 gene:ENSRNOG00000050536 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000073674","M0R757","ENSRNOT00000073674","Rn.225783","embryonic tissue","ENSRNOT00000073674","GO:0006184","GTP catabolic process","inferred from electronic annotation","ENSRNOT00000073674","GO:0005615","extracellular space","not recorded","ENSRNOT00000073674","GO:0003746","translation elongation factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073674","Pfam","IPR000795","Elongation factor, GTP-binding domain","Coding",17.37,17.35,17.44,16.22,16.03,15.75]
["TC0100001354.rn.1",7.49,8.25,-1.693,"down",4.35307111487505e-6,0.000163320082800204,"RGD1584023","similar to zinc finger protein 11B","chr1","+","mRNARGD7571352_1","coding",94788724,94838959,50,null,"NA","mRNARGD7571352_1","Rat Genome Database","similar to zinc finger protein 11B","chr1",100,100,{"$nulls":24},"Coding",7.51,7.51,7.44,8.28,8.27,8.21]
["TC0300001118.rn.1",5.09,6.5,-2.657,"down",4.40609930901067e-6,0.0001645986045093,"C1qtnf4","C1q and tumor necrosis factor related protein 4","chr3","+","NM_001107745","coding",79713493,79718027,50,"3q24",311184,"NM_001107745","RefSeq","Rattus norvegicus C1q and tumor necrosis factor related protein 4 (C1qtnf4), mRNA.","chr3",100,100,"NM_001107745","B5DF52","NM_001107745","Rn.24378","brain| eye| heart| kidney| muscle| metamorphosing embryo| adult",{"$nulls":8},"ENSRNOT00000012110","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012110","Pfam","IPR001073","Complement C1q protein","Coding",5.1,5,5.17,6.43,6.56,6.51]
["TC0800000232.rn.1",10.42,8.8,3.074,"up",4.45720530194095e-6,0.000165794675160634,"Dnm2","dynamin 2","chr8","+","NM_013199","coding",22458733,22541259,365,"8q13",25751,"NM_013199","RefSeq","Rattus norvegicus dynamin 2 (Dnm2), mRNA.","chr8",100,100,"NM_013199","P39052","NM_013199","Rn.11231","brain| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| juvenile| adult","NM_013199","GO:0006184","GTP catabolic process","inferred from electronic annotation","NM_013199","GO:0005634","nucleus","inferred from direct assay","NM_013199","GO:0003924","GTPase activity","traceable author statement",{"$nulls":3},"ENSRNOT00000010947","Pfam","IPR000375","Dynamin central domain","Coding",10.42,10.28,10.56,8.75,8.97,8.69]
["TC1000003241.rn.1",11.9,7.13,27.284,"up",4.49631958730879e-6,0.000166892238357139,"Serpinf1","serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1","chr10","-","NM_177927","coding",62241243,62254334,91,"10q24",287526,"NM_177927","RefSeq","Rattus norvegicus serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 (Serpinf1), mRNA.","chr10",100,100,"NM_177927","Q80ZA3","NM_177927","Rn.16993","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| ovary| prostate| small intestine| spleen| vibrissa|tailbud embryo| fetus| juvenile| adult","NM_177927","GO:0001822","kidney development","inferred from expression pattern","NM_177927","GO:0005576","extracellular region","inferred from direct assay","NM_177927","GO:0004867","serine-type endopeptidase inhibitor activity","not recorded",{"$nulls":3},"ENSRNOT00000004313","Pfam","IPR023796","Serpin domain","Coding",11.94,11.62,12.14,7.32,6.96,7.12]
["TC1600000245.rn.1",9.32,7.2,4.347,"up",4.53180404088617e-6,0.000167850678026085,"Myo9b","myosin IXb","chr16","+","NM_001271066","coding",19669392,19754069,510,"16p14",25486,"NM_001271066","RefSeq","Rattus norvegicus myosin IXb (Myo9b), transcript variant 1, mRNA.","chr16",100,100,"ENSRNOT00000045099","D3ZAH8","NM_001271066","Rn.33782","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001271066","GO:0002548","monocyte chemotaxis","inferred from electronic annotation","NM_001271066","GO:0001726","ruffle","inferred from direct assay","NM_001271066","GO:0000146","microfilament motor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000045099","Pfam","IPR000048","IQ motif, EF-hand binding site","Coding",9.22,9.22,9.52,7.06,7.21,7.32]
["TC1600001612.rn.1",10.31,5.73,23.918,"up",4.59903107289829e-6,0.000169896936173186,"Dctd","dCMP deaminase","chr16","-","NM_001013882","coding",47177144,47222850,55,"16q11",290741,"NM_001013882","RefSeq","Rattus norvegicus dCMP deaminase (Dctd), transcript variant 1, mRNA.","chr16",100,100,"NM_001013882","Q5M9G0","NM_001013882","Rn.105816","brain| eye| kidney| lung| pancreas| placenta| spleen|tailbud embryo| juvenile| adult","NM_001013882","GO:0008152","metabolic process","inferred from electronic annotation","NM_001013882","GO:0070062","extracellular vesicular exosome","not recorded","NM_001013882","GO:0004132","dCMP deaminase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017670","Pfam","IPR002125","CMP/dCMP deaminase, zinc-binding","Coding",9.9,10.42,10.6,5.51,5.76,5.91]
["TC1200001602.rn.1",9.07,5.34,13.269,"up",4.62844110735825e-6,0.000170079944823151,"Hvcn1","hydrogen voltage-gated channel 1","chr12","-","ENSRNOT00000001712","coding",39822044,39851037,139,"12q16",304485,"ENSRNOT00000001712","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:12:41703158:41710333:-1 gene:ENSRNOG00000001270 gene_biotype:protein_coding transcript_biotype:protein_coding","chr12",100,100,"ENSRNOT00000001712","D3ZIU8",{"$nulls":3},"ENSRNOT00000001712","GO:0009268","response to pH","inferred from electronic annotation","ENSRNOT00000001712","GO:0005887","integral component of plasma membrane","not recorded","ENSRNOT00000001712","GO:0030171","voltage-gated proton channel activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000001712","Pfam","IPR005821","Ion transport domain","Coding",9.08,8.73,9.41,5.4,5.36,5.25]
["TC0100006116.rn.1",10.47,9.48,1.986,"up",4.63115617416098e-6,0.000170079944823151,"Rps3","ribosomal protein S3","chr1","-","NM_001009239","coding",164435617,164441258,124,"1q32",140654,"NM_001009239","RefSeq","Rattus norvegicus ribosomal protein S3 (Rps3), mRNA.","chr1",100,100,"NM_001009239","P62909","NM_001009239","Rn.127805","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_001009239","GO:0000737","DNA catabolic process, endonucleolytic","not recorded","NM_001009239","GO:0005634","nucleus","not recorded","NM_001009239","GO:0003684","damaged DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000023935","Pfam","IPR001351","Ribosomal protein S3, C-terminal","Coding",10.44,10.4,10.57,9.45,9.62,9.37]
["TC1600000389.rn.1",10.15,12.84,-6.453,"down",4.64259867356525e-6,0.000170140467423,"Msmo1","methylsterol monooxygenase 1","chr16","+","NM_080886","coding",26859405,26875971,95,"16p13",140910,"NM_080886","RefSeq","Rattus norvegicus methylsterol monooxygenase 1 (Msmo1), mRNA.","chr16",100,100,"NM_080886","O35532","NM_080886","Rn.7167","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pituitary gland| prostate| small intestine| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_080886","GO:0006633","fatty acid biosynthetic process","inferred from electronic annotation","NM_080886","GO:0005789","endoplasmic reticulum membrane","inferred from electronic annotation","NM_080886","GO:0000254","C-4 methylsterol oxidase activity","inferred from electronic annotation","NM_080886","GenMAPP","Cholesterol_Biosynthesis","ENSRNOT00000044171","Pfam","IPR006694","Fatty acid hydroxylase","Coding",10.14,10.04,10.27,12.86,12.95,12.72]
["TC0700003688.rn.1",4.44,5.85,-2.657,"down",4.67479055653776e-6,0.000170288849769326,"Mapk11","mitogen-activated protein kinase 11","chr7","-","NM_001109532","coding",130121678,130128604,206,"7q34",689314,"NM_001109532","RefSeq","Rattus norvegicus mitogen-activated protein kinase 11 (Mapk11), mRNA.","chr7",100,100,"NM_001109532","B1WC76","NM_001109532","Rn.45869","brain| dorsal root ganglion| spleen| metamorphosing embryo| juvenile| adult","NM_001109532","GO:0000165","MAPK cascade","inferred from direct assay","ENSRNOT00000009325","GO:0016020","membrane","inferred from electronic annotation","NM_001109532","GO:0004707","MAP kinase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000009325","Pfam","IPR000719","Protein kinase domain","Coding",4.53,4.42,4.36,5.68,5.9,5.96]
["TC0600002608.rn.1",7.02,8.09,-2.099,"down",4.6960924053519e-6,0.000170660713751816,"Cdkl1","cyclin-dependent kinase-like 1 (CDC2-related kinase)","chr6","-","NM_001025121","coding",92076247,92122711,168,"6q24",314198,"NM_001025121","RefSeq","Rattus norvegicus cyclin-dependent kinase-like 1 (CDC2-related kinase) (Cdkl1), mRNA.","chr6",100,100,"NM_001025121","Q66HE7","NM_001025121","Rn.182073","brain| kidney| ovary| juvenile| adult","NM_001025121","GO:0006468","protein phosphorylation","inferred from electronic annotation","NM_001025121","GO:0005634","nucleus","inferred from electronic annotation","NM_001025121","GO:0004693","cyclin-dependent protein serine/threonine kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000006374","Pfam","IPR000719","Protein kinase domain","Coding",7.08,6.89,7.08,7.98,8.18,8.1]
["TC0900002139.rn.1",10.48,8.93,2.928,"up",4.75597761608581e-6,0.000172476173630536,"Acadl","acyl-CoA dehydrogenase, long chain","chr9","-","NM_012819","coding",73832663,73871946,160,"9q32",25287,"NM_012819","RefSeq","Rattus norvegicus acyl-CoA dehydrogenase, long chain (Acadl), mRNA.","chr9",100,100,"NM_012819","P15650","NM_012819","Rn.174","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_012819","GO:0001659","temperature homeostasis","inferred from electronic annotation","NM_012819","GO:0005737","cytoplasm","not recorded","NM_012819","GO:0000062","fatty-acyl-CoA binding","inferred from direct assay","NM_012819","GenMAPP","Fatty_Acid_Degradation","ENSRNOT00000017686","Pfam","IPR006091","Acyl-CoA oxidase/dehydrogenase, central domain","Coding",10.55,10.39,10.51,9.06,9.05,8.68]
["TC1300001998.rn.1",6.7,8.19,-2.809,"down",4.83654096416963e-6,0.000174182825582863,"Opn3","opsin 3","chr13","-","NM_001191933","coding",93716481,93747000,80,"13q25",498289,"NM_001191933","RefSeq","Rattus norvegicus opsin 3 (Opn3), mRNA.","chr13",100,100,"NM_001191933","D3ZFS1","NM_001191933","Rn.204549","eye| adult","NM_001191933","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001191933","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001191933","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005072","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",6.89,6.42,6.79,8.35,8.13,8.09]
["TC1300001649.rn.1",11.14,6.64,22.627,"up",4.84514845489308e-6,0.000174182825582863,"Npl","N-acetylneuraminate pyruvate lyase","chr13","-","NM_001013984","coding",70928552,70981019,197,"13q21",304860,"NM_001013984","RefSeq","Rattus norvegicus N-acetylneuraminate pyruvate lyase (Npl), mRNA.","chr13",100,100,"NM_001013984","Q66H59","NM_001013984","Rn.114492","adipose tissue| colon| connective tissue| placenta| prostate| testis| fetus| adult","NM_001013984","GO:0005975","carbohydrate metabolic process","inferred from electronic annotation","NM_001013984","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001013984","GO:0008747","N-acetylneuraminate lyase activity","not recorded",{"$nulls":3},"ENSRNOT00000003713","Pfam","IPR002220","DapA-like","Coding",11.52,10.84,11.05,6.66,6.73,6.54]
["TC0100005384.rn.1",11.32,5.43,59.302,"up",4.84789379751485e-6,0.000174182825582863,"Cd37","CD37 molecule","chr1","-","NM_017124","coding",101230470,101235962,130,"1q22",29185,"NM_017124","RefSeq","Rattus norvegicus CD37 molecule (Cd37), mRNA.","chr1",100,100,"NM_017124","P31053","NM_017124","Rn.2357","adipose tissue| brain| dorsal root ganglion| liver| pituitary gland| small intestine| spleen| thymus| juvenile| adult","NM_017124","GO:0002639","positive regulation of immunoglobulin production","inferred from electronic annotation","NM_017124","GO:0001772","immunological synapse","inferred from electronic annotation","ENSRNOT00000066834","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000066834","Pfam","IPR018499","Tetraspanin/Peripherin","Coding",11.03,10.86,12.08,5.74,5.69,4.87]
["TC0100005898.rn.1",15.12,13.67,2.732,"up",4.85317411675239e-6,0.000174182825582863,"Rps17","ribosomal protein S17","chr1","-","NM_017152","coding",143167317,143169918,55,"1q31",29286,"NM_017152","RefSeq","Rattus norvegicus ribosomal protein S17 (Rps17), mRNA.","chr1",100,100,"NM_017152","P04644","NM_017152","Rn.6920","adipose tissue| adrenal gland| dorsal root ganglion| eye| liver| lung| muscle| ovary| pituitary gland| prostate| vibrissa| adult","NM_017152","GO:0000028","ribosomal small subunit assembly","not recorded","NM_017152","GO:0022627","cytosolic small ribosomal subunit","inferred from direct assay","NM_017152","GO:0003735","structural constituent of ribosome","inferred from electronic annotation","NM_017152","GenMAPP","Ribosomal_Proteins","ENSRNOT00000025888","Pfam","IPR001210","Ribosomal protein S17e","Coding",15.21,14.98,15.16,13.85,13.72,13.45]
["TC0200000506.rn.1",9.09,5.8,9.781,"up",4.88879106916415e-6,0.000175099360128764,"Fyb","FYN binding protein","chr2","+","NM_001109176","coding",55835175,55983805,298,"2q16",499537,"NM_001109176","RefSeq","Rattus norvegicus FYN binding protein (Fyb), mRNA.","chr2",100,100,"NM_001109176","D3ZIE4","NM_001109176","Rn.139494","connective tissue| eye| pancreas| pineal gland| prostate| adult","NM_001109176","GO:0045576","mast cell activation","not recorded",{"$nulls":4},"NM_001109176","GO:0032403","protein complex binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000018634","Pfam","IPR011511","Variant SH3 domain","Coding",9.19,8.99,9.1,5.73,5.82,5.86]
["TC0100003217.rn.1",11.12,6.16,31.125,"up",4.96331394490104e-6,0.000176675669132943,"Ms4a6b","FOUND IN integral component of membrane (inferred)","chr1","+","mRNARGD7614738_1","coding",227287174,227290300,30,null,"NA","mRNARGD7614738_1","Rat Genome Database","FOUND IN integral component of membrane (inferred)","chr1",100,100,{"$nulls":24},"Coding",11.6,10.85,10.92,6.41,5.99,6.08]
["TC0900000251.rn.1",5.09,7.5,-5.315,"down",4.99525641376413e-6,0.000177449078043961,"Tmem151b","transmembrane protein 151B","chr9","+","NM_001191804","coding",17841410,17845921,70,"9q12",301253,"NM_001191804","RefSeq","Rattus norvegicus transmembrane protein 151B (Tmem151b), mRNA.","chr9",100,100,"NM_001191804","D3ZNW8","NM_001191804","Rn.214112","brain| adult",{"$nulls":19},"Coding",4.97,4.97,5.33,7.58,7.68,7.23]
["TC0700001866.rn.1",6.24,7.48,-2.362,"down",5.05811009286044e-6,0.000179315164128732,"Grasp","GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein","chr7","+","NM_138894","coding",142869785,142879533,120,"7q36",192254,"NM_138894","RefSeq","Rattus norvegicus GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein (Grasp), mRNA.","chr7",100,100,"NM_138894","Q8R4T5","NM_138894","Rn.229849","eye| lung| placenta| juvenile| adult","NM_138894","GO:0007165","signal transduction","inferred from electronic annotation","NM_138894","GO:0005886","plasma membrane","inferred from direct assay","NM_138894","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000009979","Pfam","IPR001478","PDZ domain","Coding",6.34,6.18,6.2,7.48,7.57,7.4]
["TC1200001307.rn.1",5.19,6.69,-2.828,"down",5.23598419785348e-6,0.00018449144320672,"Vgf","VGF nerve growth factor inducible","chr12","-","NM_030997","coding",22677306,22680630,50,"12q12",29461,"NM_030997","RefSeq","Rattus norvegicus VGF nerve growth factor inducible (Vgf), mRNA.","chr12",100,100,"NM_030997","P20156","NM_030997","Rn.9704","brain| dorsal root ganglion| placenta| adult","NM_030997","GO:0001541","ovarian follicle development","not recorded","NM_030997","GO:0005576","extracellular region","inferred from electronic annotation","NM_030997","GO:0005184","neuropeptide hormone activity","inferred from electronic annotation",{"$nulls":7},"Coding",5.19,5.39,4.98,6.83,6.48,6.76]
["TC0500003435.rn.1",14.06,12.43,3.095,"up",5.28789849775779e-6,0.000185943491507187,"Rps8","ribosomal protein S8","chr5","-","NM_031706","coding",136020940,136023556,90,"5q36",65136,"NM_031706","RefSeq","Rattus norvegicus ribosomal protein S8 (Rps8), mRNA.","chr5",100,100,"NM_031706","P62243","NM_031706","Rn.3198","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| nerve| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_031706","GO:0000462","maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)","not recorded","NM_031706","GO:0005634","nucleus","not recorded","NM_031706","GO:0003735","structural constituent of ribosome","not recorded",{"$nulls":3},"ENSRNOT00000025796","Pfam","IPR022309","Ribosomal protein S8e/ribosomal biogenesis NSA2","Coding",14.05,13.96,14.18,12.63,12.4,12.27]
["TC0200001720.rn.1",11.6,6.89,26.173,"up",5.32730352412424e-6,0.000186573769188633,"Ctsk","cathepsin K","chr2","+","NM_031560","coding",196655384,196666454,100,"2q34",29175,"NM_031560","RefSeq","Rattus norvegicus cathepsin K (Ctsk), mRNA.","chr2",100,100,"NM_031560","O35186","NM_031560","Rn.5598","brain| connective tissue| eye| heart| kidney| lung| ovary| pineal gland| placenta| prostate| spleen| testis| adult","NM_031560","GO:0001957","intramembranous ossification","inferred from expression pattern","NM_031560","GO:0005615","extracellular space","inferred from direct assay","NM_031560","GO:0001968","fibronectin binding","not recorded",{"$nulls":3},"ENSRNOT00000028730","Pfam","IPR000668","Peptidase C1A, papain C-terminal","Coding",11.95,11.45,11.41,6.94,6.98,6.75]
["TC1100000224.rn.1",6.76,8.75,-3.972,"down",5.35808843520436e-6,0.000187274354543129,"Hunk","hormonally upregulated Neu-associated kinase","chr11","+","NM_001191662","coding",30550141,30666242,150,"11q11",288275,"NM_001191662","RefSeq","Rattus norvegicus hormonally upregulated Neu-associated kinase (Hunk), mRNA.","chr11",100,100,"NM_001191662","D4A7Q7","NM_001191662","Rn.24157","brain| eye| lung| metamorphosing embryo| adult","NM_001191662","GO:0006468","protein phosphorylation","inferred from electronic annotation","ENSRNOT00000002866","GO:0016020","membrane","inferred from electronic annotation","NM_001191662","GO:0004672","protein kinase activity","not recorded",{"$nulls":3},"ENSRNOT00000002866","Pfam","IPR000719","Protein kinase domain","Coding",6.87,6.7,6.7,8.42,8.74,9.08]
["TC0400001540.rn.1",12.01,8.53,11.158,"up",5.37760993141787e-6,0.000187579241202128,"Edem1","ER degradation enhancer, mannosidase alpha-like 1","chr4","+","ENSRNOT00000010810","coding",140886665,140918654,190,"4q41",297504,"ENSRNOT00000010810","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:217499573:217528646:1 gene:ENSRNOG00000007944 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000010810","D3ZJE0",{"$nulls":3},"ENSRNOT00000010810","GO:0008152","metabolic process","inferred from electronic annotation","ENSRNOT00000010810","GO:0016020","membrane","inferred from electronic annotation","ENSRNOT00000010810","GO:0004559","alpha-mannosidase activity","not recorded",{"$nulls":3},"ENSRNOT00000010810","Pfam","IPR001382","Glycoside hydrolase, family 47","Coding",12.07,11.78,12.19,8.45,8.6,8.53]
["TC0700002950.rn.1",4.57,5.71,-2.204,"down",5.40404285279602e-6,0.000188123503799438,"Tspyl5","TSPY-like 5","chr7","-","ENSRNOT00000008227","coding",72323278,72328200,40,"7q22",314555,"ENSRNOT00000008227","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:72497606:72498838:-1 gene:ENSRNOG00000006278 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000008227","D3ZLU5",{"$nulls":3},"ENSRNOT00000008227","GO:0006334","nucleosome assembly","inferred from electronic annotation","ENSRNOT00000008227","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000008227","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008227","Pfam","IPR002164","Nucleosome assembly protein (NAP)","Coding",4.46,4.62,4.62,5.52,5.77,5.85]
["TC0X00002114.rn.1",12.05,10.01,4.112,"up",5.42984654532374e-6,0.000188129904403079,"RGD1565829","mannose-6-phosphate receptor, cation dependent","chrX","-","ENSRNOT00000020364","coding",88312689,88321838,160,"4q42",312689,"ENSRNOT00000020364","ENSEMBL","ensembl:known chromosome:Rnor_5.0:X:88235941:88245064:-1 gene:ENSRNOG00000014992 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000020364","Q6AY20","ENSRNOT00000020364","Rn.91427","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| small intestine| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000020364","GO:0015761","mannose transport","inferred from electronic annotation","ENSRNOT00000020364","GO:0005765","lysosomal membrane","inferred from electronic annotation","ENSRNOT00000020364","GO:0005537","mannose binding","inferred from electronic annotation",{"$nulls":7},"Coding",11.96,11.95,12.24,10.04,10.09,9.89]
["TC0800000905.rn.1",7.73,8.69,-1.945,"down",5.44048109015331e-6,0.000188129904403079,"Aagab","alpha- and gamma-adaptin binding protein","chr8","+","NM_134398","coding",68526065,68564837,120,"8q24",171435,"NM_134398","RefSeq","Rattus norvegicus alpha- and gamma-adaptin binding protein (Aagab), mRNA.","chr8",100,100,"NM_134398","Q9R0Z7","NM_134398","Rn.163023","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| heart| liver| lung| ovary| placenta| small intestine|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_134398","GO:0015031","protein transport","inferred from electronic annotation","NM_134398","GO:0005634","nucleus","not recorded",{"$nulls":7},"ENSRNOT00000011385","Pfam","IPR019341","Alpha/gamma-adaptin-binding protein p34","Coding",7.64,7.74,7.81,8.68,8.62,8.77]
["TC0400003294.rn.1",12.3,11.02,2.428,"up",5.44408395274118e-6,0.000188129904403079,"LOC685085","similar to 40S ribosomal protein S25","chr4","-","ENSRNOT00000072795","coding",120413626,120414124,30,"4q34",685085,"ENSRNOT00000072795","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:185653629:185654006:-1 gene:ENSRNOG00000045883 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000072795","M0R763",{"$nulls":18},"ENSRNOT00000072795","Pfam","IPR004977","Ribosomal protein S25","Coding",12.32,12.27,12.32,11.16,10.9,10.99]
["TC0800000914.rn.1",16.45,15.61,1.79,"up",5.44754717142068e-6,0.000188129904403079,"Rpl4","ribosomal protein L4","chr8","+","NM_022510","coding",69121667,69126814,141,"8q24",64302,"NM_022510","RefSeq","Rattus norvegicus ribosomal protein L4 (Rpl4), mRNA.","chr8",100,100,"NM_022510","P50878","NM_022510","Rn.1133","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_022510","GO:0006412","translation","inferred from electronic annotation","NM_022510","GO:0005634","nucleus","not recorded","NM_022510","GO:0003735","structural constituent of ribosome","inferred from electronic annotation","NM_022510","GenMAPP","Ribosomal_Proteins","ENSRNOT00000013461","Pfam","IPR002136","Ribosomal protein L4/L1e","Coding",16.43,16.42,16.5,15.76,15.53,15.55]
["TC0600003158.rn.1",5.8,7.06,-2.395,"down",5.5466143790878e-6,0.000191171107895107,"Begain","brain-enriched guanylate kinase-associated","chr6","-","NM_001111115","coding",132936960,132972569,135,"6q32",79146,"NM_001111115","RefSeq","Rattus norvegicus brain-enriched guanylate kinase-associated (Begain), transcript variant 1, mRNA.","chr6",100,100,"NM_001111115","O88881","NM_001111115","Rn.30036","brain| embryonic tissue| eye| pancreas| pineal gland| prostate| spleen| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_001111115","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001111115","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":7},"Coding",5.84,5.66,5.9,7.11,7.16,6.92]
["TC1000002938.rn.1",11.41,10.58,1.778,"up",5.60484116147422e-6,0.000192092500170908,"LOC691392","similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI)","chr10","-","mRNARGD2516908_1","coding",46923410,46924314,30,null,"NA","mRNARGD2516908_1","Rat Genome Database","similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI)","chr10",100,100,{"$nulls":24},"Coding",11.47,11.43,11.34,10.53,10.7,10.51]
["TC0200000900.rn.1",10.69,7.42,9.646,"up",5.61758045517364e-6,0.000192092500170908,"Pld1","phospholipase D1","chr2","+","NM_030992","coding",113652321,113849403,359,"2q23.3-q24",25096,"NM_030992","RefSeq","Rattus norvegicus phospholipase D1 (Pld1), mRNA.","chr2",100,100,"NM_030992","P70496","NM_030992","Rn.11130","colon| dorsal root ganglion| eye| kidney| lung| ovary| pituitary gland| placenta| small intestine| spleen| fetus| juvenile| adult","NM_030992","GO:0006654","phosphatidic acid biosynthetic process","inferred from mutant phenotype","NM_030992","GO:0000139","Golgi membrane","inferred from electronic annotation","NM_030992","GO:0003824","catalytic activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000039296","Pfam","IPR001683","Phox homologous domain","Coding",10.79,10.5,10.78,7.38,7.48,7.39]
["TC0X00000675.rn.1",15.56,13.92,3.117,"up",5.66103506723574e-6,0.000193198114249415,"LOC100361756","ribosomal protein S26-like","chrX","+","mRNARGD2408599_1","coding",74188378,74188724,30,null,"NA","mRNARGD2408599_1","Rat Genome Database","ribosomal protein S26-like","chrX",100,100,{"$nulls":24},"Coding",15.62,15.38,15.69,13.93,14.19,13.65]
["TC1000002487.rn.1",12.9,10.7,4.595,"up",5.70645151486977e-6,0.000194164823549621,"Atp6v0e1","ATPase, H+ transporting, lysosomal, V0 subunit e1","chr10","-","NM_053578","coding",16769846,16792930,83,"10q12",94170,"NM_053578","RefSeq","Rattus norvegicus ATPase, H+ transporting, lysosomal, V0 subunit e1 (Atp6v0e1), mRNA.","chr10",100,100,"NM_053578","Q794C0","NM_053578","Rn.789","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| fetus| juvenile| adult","NM_053578","GO:0008152","metabolic process","inferred from electronic annotation","NM_053578","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_053578","GO:0015078","hydrogen ion transmembrane transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000004653","Pfam","IPR008389","ATPase, V0 complex, subunit e1/e2","Coding",12.94,12.76,13.01,10.76,10.85,10.49]
["TC0X00001138.rn.1",8.93,9.7,-1.705,"down",5.71171635679329e-6,0.000194164823549621,"Ocrl","oculocerebrorenal syndrome of Lowe","chrX","+","NM_001108256","coding",134730346,134793411,270,"Xq35",317576,"NM_001108256","RefSeq","Rattus norvegicus oculocerebrorenal syndrome of Lowe (Ocrl), mRNA.","chrX",100,100,"NM_001108256","R9PXS2","NM_001108256","Rn.36925","adipose tissue| brain| eye| liver| muscle| ovary| prostate| metamorphosing embryo| juvenile| adult","NM_001108256","GO:0001701","in utero embryonic development","inferred from electronic annotation","NM_001108256","GO:0001750","photoreceptor outer segment","inferred from electronic annotation","NM_001108256","GO:0004439","phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005267","Pfam","IPR000198","Rho GTPase-activating protein domain","Coding",8.96,8.9,8.93,9.59,9.74,9.77]
["TC0100004099.rn.1",7.84,10.06,-4.659,"down",5.74818689765122e-6,0.000194410109928996,"Pde7b","phosphodiesterase 7B","chr1","-","NM_080894","coding",15890540,16203909,160,"1p12",140929,"NM_080894","RefSeq","Rattus norvegicus phosphodiesterase 7B (Pde7b), mRNA.","chr1",100,100,"NM_080894","F1LN39","NM_080894","Rn.234527","brain| testis| adult","NM_080894","GO:0008152","metabolic process","inferred from direct assay",{"$nulls":4},"NM_080894","GO:0004115","3',5'-cyclic-AMP phosphodiesterase activity","inferred from direct assay","NM_080894","GenMAPP","G_Protein_Signaling","ENSRNOT00000018556","Pfam","IPR002073","3'5'-cyclic nucleotide phosphodiesterase, catalytic domain","Coding",7.61,8.03,7.87,10.28,9.98,9.92]
["TC0700003270.rn.1",4.61,6.22,-3.053,"down",5.75665539576182e-6,0.000194410109928996,"Lrrc6","leucine rich repeat containing 6","chr7","-","NM_001025659","coding",107130043,107231573,160,"7q33",299920,"NM_001025659","RefSeq","Rattus norvegicus leucine rich repeat containing 6 (Lrrc6), mRNA.","chr7",100,100,"NM_001025659","I6L9H6","NM_001025659","Rn.124772","testis","NM_001025659","GO:0003341","cilium movement","not recorded","NM_001025659","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000007250","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",4.54,4.68,4.6,6.29,6.32,6.04]
["TC0100003210.rn.1",10.15,5.35,27.858,"up",5.79471169925591e-6,0.000194884021544691,"Slc15a3","solute carrier family 15 (oligopeptide transporter), member 3","chr1","+","NM_139341","coding",226897718,226912971,100,"1q43",246239,"NM_139341","RefSeq","Rattus norvegicus solute carrier family 15 (oligopeptide transporter), member 3 (Slc15a3), mRNA.","chr1",100,100,"NM_139341","Q924V4","NM_139341","Rn.17317","brain| colon| connective tissue| heart| muscle| placenta| adult","NM_139341","GO:0015031","protein transport","inferred from electronic annotation","NM_139341","GO:0005765","lysosomal membrane","inferred from direct assay","NM_139341","GO:0005427","proton-dependent oligopeptide secondary active transmembrane transporter activity","traceable author statement",{"$nulls":3},"ENSRNOT00000029443","Pfam","IPR000109","Proton-dependent oligopeptide transporter family","Coding",10,9.93,10.53,5.54,5.47,5.04]
["TC1100000245.rn.1",11.57,7.54,16.336,"up",5.80750154790581e-6,0.000194884021544691,"Il10rb","interleukin 10 receptor, beta","chr11","+","NM_001107111","coding",31560490,31582457,120,"11q11",304091,"NM_001107111","RefSeq","Rattus norvegicus interleukin 10 receptor, beta (Il10rb), mRNA.","chr11",100,100,"NM_001107111","D3ZM36","NM_001107111","Rn.22261","adrenal gland| connective tissue| dorsal root ganglion| heart| liver| lung| pancreas| placenta| prostate| spleen| vibrissa|tailbud embryo| adult","NM_001107111","GO:0007596","blood coagulation","inferred from electronic annotation","NM_001107111","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001107111","GO:0004920","interleukin-10 receptor activity","not recorded",{"$nulls":3},"ENSRNOT00000061345","Pfam","IPR015373","Interferon alpha/beta receptor, beta chain","Coding",11.8,11.35,11.57,7.59,7.65,7.37]
["TC1200000868.rn.1",7.25,8.3,-2.071,"down",5.81140539751021e-6,0.000194884021544691,"Ulk1","unc-51 like autophagy activating kinase 1","chr12","+","NM_001108341","coding",51908448,51934702,308,"12q16",360827,"NM_001108341","RefSeq","Rattus norvegicus unc-51 like autophagy activating kinase 1 (Ulk1), mRNA.","chr12",100,100,"NM_001108341","D3ZMG0","NM_001108341","Rn.24509","adrenal gland| brain| connective tissue| dorsal root ganglion| heart| kidney| liver| lung| muscle| ovary| pancreas| placenta| prostate| spleen| thymus|tailbud embryo| juvenile| adult","NM_001108341","GO:0000045","autophagic vacuole assembly","not recorded","NM_001108341","GO:0000407","pre-autophagosomal structure","not recorded","NM_001108341","GO:0004672","protein kinase activity","not recorded",{"$nulls":3},"ENSRNOT00000056790","Pfam","IPR000719","Protein kinase domain","Coding",7.27,7.16,7.32,8.26,8.35,8.29]
["TC0600002983.rn.1",12.16,8.4,13.548,"up",5.88521074641722e-6,0.000196845313773112,"Galc","galactosylceramidase","chr6","-","NM_001005888","coding",122177195,122239430,284,"6q32",314360,"NM_001005888","RefSeq","Rattus norvegicus galactosylceramidase (Galc), mRNA.","chr6",100,100,"NM_001005888","G3V6H1","NM_001005888","Rn.30608","brain| connective tissue| dorsal root ganglion| eye| kidney| lung| ovary| pituitary gland| placenta| testis| juvenile| adult","NM_001005888","GO:0005975","carbohydrate metabolic process","inferred from electronic annotation","NM_001005888","GO:0005739","mitochondrion","inferred from electronic annotation","NM_001005888","GO:0004336","galactosylceramidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005015","Pfam","IPR001286","Glycoside hydrolase, family 59","Coding",12.34,12.04,12.09,8.33,8.47,8.39]
["TC1800000603.rn.1",11.77,6.21,47.177,"up",5.89255443912372e-6,0.000196845313773112,"RGD1309362","similar to interferon-inducible GTPase","chr18","+","ENSRNOT00000071612","coding",55390683,55394081,30,"18q12.1",307415,"ENSRNOT00000071612","ENSEMBL","ensembl:known chromosome:Rnor_5.0:18:54627727:54628980:1 gene:ENSRNOG00000049893 gene_biotype:protein_coding transcript_biotype:protein_coding","chr18",100,100,"ENSRNOT00000071612","Q4V797","ENSRNOT00000071612","Rn.160023","brain| kidney| ovary| placenta| prostate| metamorphosing embryo| juvenile| adult","ENSRNOT00000071612","GO:0008152","metabolic process","inferred from electronic annotation","ENSRNOT00000071612","GO:0016020","membrane","inferred from electronic annotation","ENSRNOT00000071612","GO:0005525","GTP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000071612","Pfam","IPR007743","Interferon-inducible GTPase","Coding",11.5,11.86,11.96,7.02,6.36,5.26]
["TC1000000470.rn.1",6.75,4.39,5.134,"up",5.9372516774918e-6,0.000197668482621105,"Ifi47","interferon gamma inducible protein 47","chr10","+","NM_172019","coding",34277993,34285623,35,"10q21",246208,"NM_172019","RefSeq","Rattus norvegicus interferon gamma inducible protein 47 (Ifi47), mRNA.","chr10",100,100,"NM_172019","E9PU10","NM_172019","Rn.8717","adipose tissue| colon| connective tissue| dorsal root ganglion| eye| liver| lung| placenta| prostate| spleen| fetus| juvenile| adult","NM_172019","GO:0006952","defense response","inferred from electronic annotation","NM_172019","GO:0016020","membrane","inferred from electronic annotation","NM_172019","GO:0005525","GTP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000003343","Pfam","IPR007743","Interferon-inducible GTPase","Coding",6.63,6.59,7.03,4.1,4.43,4.65]
["TC0800002952.rn.1",4.63,5.58,-1.932,"down",5.93995440263756e-6,0.000197668482621105,"Hcrtr2","hypocretin (orexin) receptor 2","chr8","-","NM_013074","coding",83307683,83421612,80,"8q24",25605,"NM_013074","RefSeq","Rattus norvegicus hypocretin (orexin) receptor 2 (Hcrtr2), mRNA.","chr8",100,100,"NM_013074","P56719","NM_013074","Rn.9893",null,"NM_013074","GO:0007186","G-protein coupled receptor signaling pathway","inferred from direct assay","NM_013074","GO:0005886","plasma membrane","inferred from electronic annotation","NM_013074","GO:0004930","G-protein coupled receptor activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000015824","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",4.63,4.62,4.63,5.52,5.51,5.71]
["TC0900002392.rn.1",15.1,14.32,1.717,"up",5.97825391324418e-6,0.000198562617068766,"Ncl","nucleolin","chr9","-","NM_012749","coding",93368932,93377684,166,"9q35",25135,"NM_012749","RefSeq","Rattus norvegicus nucleolin (Ncl), mRNA.","chr9",100,100,"NM_012749","C1KE06","NM_012749","Rn.144561","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_012749","GO:0001525","angiogenesis","not recorded","NM_012749","GO:0005634","nucleus","not recorded","NM_012749","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024712","Pfam","IPR000504","RNA recognition motif domain","Coding",15.23,15.05,15.03,14.37,14.26,14.34]
["TC0200001447.rn.1",12.31,10.1,4.627,"up",6.0161330166948e-6,0.000199059517396201,"LOC684529","similar to cathepsin O","chr2","+","mRNARGD7706286_1","coding",180878368,180881677,30,null,"NA","mRNARGD7706286_1","Rat Genome Database","similar to cathepsin O","chr2",100,100,{"$nulls":24},"Coding",12.27,11.99,12.66,10.1,10.31,9.88]
["TC0400003158.rn.1",9.68,5.79,14.825,"up",6.03540408483858e-6,0.000199317498778956,"Hk2","hexokinase 2","chr4","-","NM_012735","coding",113559391,113610151,210,"4q34",25059,"NM_012735","RefSeq","Rattus norvegicus hexokinase 2 (Hk2), mRNA.","chr4",100,100,"NM_012735","P27881","NM_012735","Rn.91375","heart| lung| muscle| pituitary gland| prostate| juvenile| adult","NM_012735","GO:0001678","cellular glucose homeostasis","not recorded","NM_012735","GO:0005739","mitochondrion","inferred from direct assay","NM_012735","GO:0004340","glucokinase activity","not recorded","NM_012735","GenMAPP","Glycolysis_and_Gluconeogenesis","ENSRNOT00000008813","Pfam","IPR022672","Hexokinase, N-terminal","Coding",9.56,9.34,10.13,5.93,5.91,5.52]
["TC1900000467.rn.1",12.65,9.15,11.314,"up",6.07689019406223e-6,0.000199927385532301,"Cbfb","core-binding factor, beta subunit","chr19","+","NM_001013191","coding",37127508,37171075,127,"19q11",361391,"NM_001013191","RefSeq","Rattus norvegicus core-binding factor, beta subunit (Cbfb), mRNA.","chr19",100,100,"NM_001013191","Q66HA7","NM_001013191","Rn.7308","brain| connective tissue| dorsal root ganglion| eye| heart| kidney| lung| muscle| pancreas| prostate| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001013191","GO:0001503","ossification","not recorded","NM_001013191","GO:0005634","nucleus","inferred from electronic annotation","NM_001013191","GO:0003677","DNA binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000019656","Pfam","IPR003417","Core binding factor, beta subunit","Coding",12.66,12.44,12.86,9.13,8.99,9.34]
["TC1900001580.rn.1",9.89,6.27,12.295,"up",6.14920116640394e-6,0.000201201312334788,"Cotl1","coactosin-like F-actin binding protein 1","chr19","-","NM_001108452","coding",52465074,52499452,69,"19q12",361422,"NM_001108452","RefSeq","Rattus norvegicus coactosin-like F-actin binding protein 1 (Cotl1), mRNA.","chr19",100,100,"NM_001108452","B0BNA5","NM_001108452","Rn.98506","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001108452","GO:0050832","defense response to fungus","inferred from electronic annotation","NM_001108452","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001108452","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000021954","Pfam","IPR002108","Actin-depolymerising factor homology domain","Coding",10.05,9.47,10.14,6.64,6.13,6.04]
["TC1000003726.rn.1",9.24,4.96,19.427,"up",6.17859039812134e-6,0.000201744913168733,"Top2a","topoisomerase (DNA) II alpha","chr10","-","NM_022183","coding",86901012,86938099,452,"10q31",360243,"NM_022183","RefSeq","Rattus norvegicus topoisomerase (DNA) II alpha (Top2a), mRNA.","chr10",100,100,"NM_022183","P41516","NM_022183","Rn.90996","adrenal gland| colon| connective tissue| embryonic tissue| heart| kidney| liver| lung| pancreas| prostate| small intestine| spleen| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_022183","GO:0000712","resolution of meiotic recombination intermediates","not recorded","NM_022183","GO:0000228","nuclear chromosome","inferred from electronic annotation","NM_022183","GO:0000287","magnesium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000050725","Pfam","IPR002205","DNA topoisomerase, type IIA, subunit A/C-terminal","Coding",9.61,8.82,9.3,5.12,4.93,4.82]
["TC0600003032.rn.1",13.31,9.38,15.242,"up",6.19746020492723e-6,0.000201981390656268,"LOC100910182","galactocerebrosidase-like","chr6","-","mRNARGD6499800_1","coding",125278800,125307640,103,null,"NA","mRNARGD6499800_1","Rat Genome Database","galactocerebrosidase-like","chr6",100,100,{"$nulls":24},"Coding",13.51,13.18,13.24,9.27,9.49,9.39]
["TC0800001217.rn.1",10.52,9.48,2.056,"up",6.2223885851466e-6,0.000202414067626557,"RGD1561944","INTERACTS WITH cefaloridine","chr8","+","mRNARGD7570350_1","coding",91300425,91300998,30,null,"NA","mRNARGD7570350_1","Rat Genome Database","INTERACTS WITH cefaloridine","chr8",100,100,{"$nulls":24},"Coding",10.63,10.39,10.55,9.57,9.52,9.34]
["TC1800000823.rn.1",14.55,13.54,2.014,"up",6.28005018895885e-6,0.000203647635321192,"Rpl17","ribosomal protein L17","chr18","+","NM_201415","coding",70969689,70972844,122,"18q12.3",291434,"NM_201415","RefSeq","Rattus norvegicus ribosomal protein L17 (Rpl17), mRNA.","chr18",100,100,"NM_201415","P24049","NM_201415","Rn.34429","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| prostate| thymus| vibrissa|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_201415","GO:0006412","translation","traceable author statement","NM_201415","GO:0005634","nucleus","not recorded","NM_201415","GO:0003735","structural constituent of ribosome","traceable author statement","NM_201415","GenMAPP","Ribosomal_Proteins","ENSRNOT00000025217","Pfam","IPR001063","Ribosomal protein L22/L17","Coding",14.52,14.52,14.62,13.55,13.61,13.47]
["TC1800001687.rn.1",10.54,8.36,4.532,"up",6.3589509730185e-6,0.000204937237712428,"Me2","malic enzyme 2, NAD(+)-dependent, mitochondrial","chr18","-","NM_001107376","coding",69738686,69784484,210,"18q12.2",307270,"NM_001107376","RefSeq","Rattus norvegicus malic enzyme 2, NAD(+)-dependent, mitochondrial (Me2), mRNA.","chr18",100,100,"NM_001107376","D3ZJH9","NM_001107376","Rn.16233","colon| connective tissue| dorsal root ganglion| embryonic tissue| nerve| pineal gland| prostate| small intestine| fetus| adult","NM_001107376","GO:0006108","malate metabolic process","inferred from electronic annotation","NM_001107376","GO:0005739","mitochondrion","inferred from electronic annotation","NM_001107376","GO:0004471","malate dehydrogenase (decarboxylating) (NAD+) activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000049759","Pfam","IPR012301","Malic enzyme, N-terminal domain","Coding",10.52,10.2,10.9,8.24,8.58,8.26]
["TC1000002909.rn.1",6.8,8.1,-2.462,"down",6.37073906883374e-6,0.000204937237712428,"Snap47","synaptosomal-associated protein, 47","chr10","-","NM_199389","coding",45757179,45798778,60,"10q22",303183,"NM_199389","RefSeq","Rattus norvegicus synaptosomal-associated protein, 47 (Snap47), mRNA.","chr10",100,100,"NM_199389","Q6P6S0","NM_199389","Rn.143911","brain| dorsal root ganglion| kidney| placenta| prostate| spleen| testis| adult","NM_199389","GO:0060291","long-term synaptic potentiation","not recorded","NM_199389","GO:0012505","endomembrane system","inferred from electronic annotation","ENSRNOT00000028948","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",6.96,6.67,6.77,8.03,8.17,8.11]
["TC2000001536.rn.1",13.42,9.44,15.78,"up",6.44205293733431e-6,0.000205866818774671,"Sgpl1","sphingosine-1-phosphate lyase 1","chr20","-","NM_173116","coding",30699936,30749940,180,"20q11",286896,"NM_173116","RefSeq","Rattus norvegicus sphingosine-1-phosphate lyase 1 (Sgpl1), mRNA.","chr20",100,100,"NM_173116","Q8CHN6","NM_173116","Rn.26953","adipose tissue| brain| colon| connective tissue| eye| liver| pancreas| pituitary gland| placenta| prostate| spleen| thymus| fetus| juvenile| adult","NM_173116","GO:0001553","luteinization","inferred from electronic annotation","NM_173116","GO:0005783","endoplasmic reticulum","not recorded","NM_173116","GO:0008117","sphinganine-1-phosphate aldolase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065127","Pfam","IPR000192","Aminotransferase class V domain","Coding",13.72,13.16,13.38,9.31,9.53,9.47]
["TC0900000078.rn.1",10.91,5.79,34.776,"up",6.4443239735098e-6,0.000205866818774671,"C3","complement component 3","chr9","+","NM_016994","coding",9721137,9747084,410,"9q11",24232,"NM_016994","RefSeq","Rattus norvegicus complement component 3 (C3), mRNA.","chr9",100,100,"NM_016994","P01026","NM_016994","Rn.11378","adipose tissue| brain| connective tissue| eye| liver| lung| placenta| prostate| spleen| juvenile| adult","NM_016994","GO:0001798","positive regulation of type IIa hypersensitivity","inferred from electronic annotation","NM_016994","GO:0005615","extracellular space","inferred from direct assay","NM_016994","GO:0004866","endopeptidase inhibitor activity","inferred from electronic annotation","NM_016994","GenMAPP","Complement_Activation_Classical","ENSRNOT00000073042","Pfam","IPR000020","Anaphylatoxin/fibulin","Coding",10.3,10.77,11.65,5.71,6.03,5.63]
["TC1600001725.rn.1",12.22,5.43,110.661,"up",6.46871190337993e-6,0.000205866818774671,"Msr1","macrophage scavenger receptor 1","chr16","-","NM_001191939","coding",56818038,56900004,150,"16q12.1",498638,"NM_001191939","RefSeq","Rattus norvegicus macrophage scavenger receptor 1 (Msr1), mRNA.","chr16",100,100,"NM_001191939","D3ZDS2","NM_001191939","Rn.231068","heart| liver|tailbud embryo","NM_001191939","GO:0006898","receptor-mediated endocytosis","inferred from electronic annotation","NM_001191939","GO:0005829","cytosol","inferred from direct assay","NM_001191939","GO:0005044","scavenger receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017339","Pfam","IPR001190","SRCR domain","Coding",12.68,11.99,11.98,5.54,5.42,5.33]
["TC2000001816.rn.1",11.15,5.89,38.319,"up",6.48807338831687e-6,0.000205866818774671,"LOC103689965","complement component 4B (Chido blood group)complement component 4A (Rodgers blood group)","chr20","-","C4aandC4-2.eSep08","coding",4495465,4508210,380,null,"NA","C4aandC4-2.eSep08","Ace View","complement component 4B (Chido blood group)complement component 4A (Rodgers blood group)","chr20",100,100,"ENSRNOT00000000514","F1LNM4",{"$nulls":3},"ENSRNOT00000000514","GO:0006956","complement activation","inferred from electronic annotation","ENSRNOT00000000514","GO:0005576","extracellular region","inferred from electronic annotation","ENSRNOT00000000514","GO:0004866","endopeptidase inhibitor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000514","Pfam","IPR000020","Anaphylatoxin/fibulin","Coding",11.11,11.11,11.24,5.87,6.15,5.66]
["TC0500002879.rn.1",17.73,16.99,1.67,"up",6.48862189160487e-6,0.000205866818774671,"LOC100910017","60S ribosomal protein L31-like","chr5","-","ENSRNOT00000043610","coding",78392652,78393112,27,null,100910017,"ENSRNOT00000043610","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:82511660:82512034:-1 gene:ENSRNOG00000033024 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000043610","D3ZX87",{"$nulls":3},"ENSRNOT00000043610","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000043610","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000043610","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000043610","Pfam","IPR000054","Ribosomal protein L31e","Coding",17.76,17.74,17.7,17.08,17.02,16.86]
["TC0X00000278.rn.1",8.65,5.75,7.464,"up",6.49109909355878e-6,0.000205866818774671,"Tlr7","toll-like receptor 7","chrX","+","NM_001097582","coding",28486856,28512668,111,"Xq21",317468,"NM_001097582","RefSeq","Rattus norvegicus toll-like receptor 7 (Tlr7), mRNA.","chrX",100,100,"NM_001097582","A5H2Z9","NM_001097582","Rn.14819","brain| connective tissue| lung| ovary| pancreas| placenta| juvenile| adult","NM_001097582","GO:0001774","microglial cell activation","inferred from direct assay","NM_001097582","GO:0005737","cytoplasm","not recorded","NM_001097582","GO:0003725","double-stranded RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005620","Pfam","IPR000157","Toll/interleukin-1 receptor homology (TIR) domain","Coding",8.52,8.46,8.96,5.61,5.7,5.94]
["TC0700001520.rn.1",8.26,10.74,-5.579,"down",6.49444572497379e-6,0.000205866818774671,"Srebf2","sterol regulatory element binding transcription factor 2","chr7","+","NM_001033694","coding",123379556,123438610,250,"7q34",300095,"NM_001033694","RefSeq","Rattus norvegicus sterol regulatory element binding transcription factor 2 (Srebf2), mRNA.","chr7",100,100,"NM_001033694","Q3T1I5","NM_001033694","Rn.41063","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| metamorphosing embryo| fetus| adult","NM_001033694","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","not recorded","NM_001033694","GO:0000139","Golgi membrane","inferred from electronic annotation","NM_001033694","GO:0000247","C-8 sterol isomerase activity","not recorded",{"$nulls":3},"ENSRNOT00000056041","Pfam","IPR011598","Myc-type, basic helix-loop-helix (bHLH) domain","Coding",8.21,8.06,8.51,10.87,10.73,10.61]
["TC0800000046.rn.1",12.69,4.68,257.781,"up",6.5063289826644e-6,0.00020586783380303,"Mmp8","matrix metallopeptidase 8","chr8","+","NM_022221","coding",5768824,5777741,110,"8q11",63849,"NM_022221","RefSeq","Rattus norvegicus matrix metallopeptidase 8 (Mmp8), mRNA.","chr8",100,100,"NM_022221","O88766","NM_022221","Rn.44474","adipose tissue| adult","NM_022221","GO:0001503","ossification","inferred from expression pattern","NM_022221","GO:0005578","proteinaceous extracellular matrix","inferred from electronic annotation","NM_022221","GO:0004222","metalloendopeptidase activity","inferred from electronic annotation","NM_022221","GenMAPP","Matrix_Metalloproteinases","ENSRNOT00000013936","Pfam","IPR001818","Peptidase M10, metallopeptidase","Coding",13.72,11.23,13.11,4.71,4.37,4.97]
["TC1600000433.rn.1",12.7,10.58,4.347,"up",6.5303680442682e-6,0.000206252769630878,"Hmgn2","high mobility group nucleosome binding domain 2","chr16","+","ENSRNOT00000067624","coding",33942594,33943784,30,"5q36",114637,"ENSRNOT00000067624","ENSEMBL","ensembl:known chromosome:Rnor_5.0:16:33775173:33776354:1 gene:ENSRNOG00000043004 gene_biotype:protein_coding transcript_biotype:protein_coding","chr16",100,100,"ENSRNOT00000067624","Q4KLJ0","ENSRNOT00000067624","Rn.3517","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| prostate| small intestine| spleen| thymus| metamorphosing embryo| juvenile| adult","ENSRNOT00000067624","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","not recorded","ENSRNOT00000067624","GO:0000785","chromatin","inferred from electronic annotation","ENSRNOT00000067624","GO:0031492","nucleosomal DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000067624","Pfam","IPR000079","High mobility group nucleosome-binding domain-containing family","Coding",13.1,12.34,12.66,10.6,10.73,10.41]
["TC0700002754.rn.1",9.32,6.65,6.364,"up",6.55675738556523e-6,0.000206466615351157,"Lyz2","lysozyme 2","chr7","-","NM_012771","coding",60335966,60341402,110,"7q22",25211,"NM_012771","RefSeq","Rattus norvegicus lysozyme 2 (Lyz2), mRNA.","chr7",100,100,"NM_012771","E9PTI2","NM_012771","Rn.2283","brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| fetus| juvenile| adult","NM_012771","GO:0016998","cell wall macromolecule catabolic process","inferred from electronic annotation","NM_012771","GO:0000137","Golgi cis cisterna","inferred from direct assay","NM_012771","GO:0003796","lysozyme activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000007747","Pfam","IPR001916","Glycoside hydrolase, family 22","Coding",9.51,9.27,9.18,6.76,6.55,6.65]
["TC0200000264.rn.1",7.61,5.51,4.287,"up",6.56117056274042e-6,0.000206466615351157,"Ccdc125","coiled-coil domain containing 125","chr2","+","NM_001134761","coding",30685845,30704491,164,"2q12",499518,"NM_001134761","RefSeq","Rattus norvegicus coiled-coil domain containing 125 (Ccdc125), mRNA.","chr2",100,100,"NM_001134761","B2RYD1","NM_001134761","Rn.21916","brain| embryonic tissue| kidney| liver| prostate| small intestine| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_001134761","GO:0045111","intermediate filament cytoskeleton","inferred from electronic annotation",{"$nulls":11},"Coding",7.55,7.55,7.73,5.58,5.4,5.54]
["TC1700002369.rn.1",5.68,8.05,-5.169,"down",6.59019418432976e-6,0.000206466615351157,"Gng4","guanine nucleotide binding protein (G protein), gamma 4","chr17","-","ENSRNOT00000070807","coding",90269395,90315815,50,null,114118,"ENSRNOT00000070807","ENSEMBL","ensembl:known chromosome:Rnor_5.0:17:91930878:91950536:-1 gene:ENSRNOG00000047080 gene_biotype:protein_coding transcript_biotype:protein_coding","chr17",100,100,"ENSRNOT00000070807","M0R809",{"$nulls":3},"ENSRNOT00000070807","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","ENSRNOT00000070807","GO:0005834","heterotrimeric G-protein complex","inferred from electronic annotation","ENSRNOT00000070807","GO:0004871","signal transducer activity","inferred from electronic annotation","ENSRNOT00000070807","GenMAPP","G_Protein_Signaling","ENSRNOT00000070807","Pfam","IPR015898","G-protein gamma-like domain","Coding",5.69,5.87,5.47,7.76,8.16,8.22]
["TC1700001069.rn.1",13.74,11.98,3.387,"up",6.59479392520391e-6,0.000206466615351157,"Plxdc2","plexin domain containing 2","chr17","+","NM_001108422","coding",83221714,83619291,224,"17q12.3",361282,"NM_001108422","RefSeq","Rattus norvegicus plexin domain containing 2 (Plxdc2), mRNA.","chr17",100,100,"NM_001108422","B5DEZ8","NM_001108422","Rn.36200","adipose tissue| colon| dorsal root ganglion| embryonic tissue| eye| kidney| lung| muscle| placenta| fetus| juvenile| adult","NM_001108422","GO:0007275","multicellular organismal development","inferred from electronic annotation","NM_001108422","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001108422","GO:0004872","receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000155","Pfam","IPR002165","Plexin","Coding",13.46,13.94,13.81,11.99,12.23,11.73]
["TC1800001749.rn.1",9.22,10.18,-1.945,"down",6.5965673547805e-6,0.000206466615351157,"RGD1308601","similar to hypothetical protein","chr18","-","NM_001107374","coding",74012963,74059508,91,"18q12.3",307249,"NM_001107374","RefSeq","Rattus norvegicus similar to hypothetical protein (RGD1308601), mRNA.","chr18",100,100,"NM_001107374","D4A3X1","NM_001107374","Rn.212915","adipose tissue| connective tissue| eye| pituitary gland| adult",{"$nulls":19},"Coding",9.29,9.1,9.26,10.06,10.2,10.28]
["TC0X00001370.rn.1",16.04,14.1,3.837,"up",6.66510426987679e-6,0.000207490190451666,"LOC685320","ribosomal protein L12","chrX","-","ENSRNOT00000042736","coding",1345534,1346241,30,"3p11",499782,"ENSRNOT00000042736","ENSEMBL","ensembl:known chromosome:Rnor_5.0:X:2160755:2161252:-1 gene:ENSRNOG00000028993 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000042736","P23358","ENSRNOT00000042736","Rn.128979","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000042736","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000042736","GO:0005634","nucleus","not recorded","ENSRNOT00000042736","GO:0003723","RNA binding","inferred from electronic annotation","ENSRNOT00000042736","GenMAPP","Ribosomal_Proteins","ENSRNOT00000042736","Pfam","IPR020783","Ribosomal protein L11, C-terminal","Coding",16.08,15.78,16.25,14.24,13.79,14.26]
["TC1300001916.rn.1",15.74,14.52,2.329,"up",6.68745538990008e-6,0.000207813573484712,"LOC100359583","prothymosin alpha","chr13","-","ENSRNOT00000051368","coding",89769181,89874034,52,"9q35",29222,"ENSRNOT00000051368","ENSEMBL","ensembl:known chromosome:Rnor_5.0:13:94396996:94501245:-1 gene:ENSRNOG00000025731 gene_biotype:protein_coding transcript_biotype:protein_coding","chr13",100,100,"ENSRNOT00000051368","P06302","ENSRNOT00000051368","Rn.817","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000051368","GO:0008283","cell proliferation","traceable author statement","ENSRNOT00000051368","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000051368","GO:0042393","histone binding","not recorded",{"$nulls":3},"ENSRNOT00000051368","Pfam","IPR004931","Prothymosin/parathymosin","Coding",15.71,15.75,15.75,14.61,14.56,14.38]
["TC1400002227.rn.1",9.25,7.14,4.317,"up",6.73821336368733e-6,0.000208644392764015,"Tns3","tensin 3","chr14","-","NM_001170459","coding",88673922,88908070,456,"14q21",360980,"NM_001170459","RefSeq","Rattus norvegicus tensin 3 (Tns3), mRNA.","chr14",100,100,"NM_001170459","B1H276","NM_001170459","Rn.54151","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| ovary| pancreas| placenta| prostate| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_001170459","GO:0008284","positive regulation of cell proliferation","inferred from electronic annotation","NM_001170459","GO:0005737","cytoplasm","not recorded","ENSRNOT00000012661","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012661","Pfam","IPR000980","SH2 domain","Coding",9.1,9.1,9.54,7.05,7.31,7.05]
["TC0300002241.rn.1",9.76,6.79,7.835,"up",6.7792276557965e-6,0.000208646548156856,"Vwa5a","von Willebrand factor A domain containing 5A","chr3","+","ENSRNOT00000000211","coding",158997820,159021757,232,null,301097,"ENSRNOT00000000211","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:165209768:165232682:1 gene:ENSRNOG00000046414 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000000211","Q75WE7","ENSRNOT00000000211","Rn.105620","adipose tissue| brain| colon| dorsal root ganglion| eye| liver| lung| pituitary gland| placenta| prostate|tailbud embryo| fetus| juvenile| adult",{"$nulls":15},"ENSRNOT00000000211","Pfam","IPR002035","von Willebrand factor, type A","Coding",9.91,9.76,9.61,6.76,6.98,6.64]
["TC1000003816.rn.1",12.33,10.19,4.408,"up",6.78606165053773e-6,0.000208646548156856,"Stat3","signal transducer and activator of transcription 3 (acute-phase response factor)","chr10","-","NM_012747","coding",88790401,88842385,322,"10q32.1",25125,"NM_012747","RefSeq","Rattus norvegicus signal transducer and activator of transcription 3 (acute-phase response factor) (Stat3), mRNA.","chr10",100,100,"NM_012747","P52631","NM_012747","Rn.10247","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa|tailbud embryo| fetus| juvenile| adult","NM_012747","GO:0001659","temperature homeostasis","not recorded","NM_012747","GO:0005634","nucleus","inferred from direct assay","NM_012747","GO:0000981","sequence-specific DNA binding RNA polymerase II transcription factor activity","not recorded","NM_012747","GenMAPP","TGF_Beta_Signaling_Pathway","ENSRNOT00000026760","Pfam","IPR000980","SH2 domain","Coding",12.33,12.33,12.34,10.12,10.32,10.13]
["TC0300000761.rn.1",8.31,4.46,14.42,"up",6.78632777091841e-6,0.000208646548156856,"Dhrs9","dehydrogenase/reductase (SDR family) member 9","chr3","+","NM_130819","coding",55623662,55645883,50,"3q21",170635,"NM_130819","RefSeq","Rattus norvegicus dehydrogenase/reductase (SDR family) member 9 (Dhrs9), mRNA.","chr3",100,100,"NM_130819","Q8VD48","NM_130819","Rn.81185","placenta","NM_130819","GO:0002138","retinoic acid biosynthetic process","inferred from expression pattern","NM_130819","GO:0030176","integral component of endoplasmic reticulum membrane","inferred from electronic annotation","NM_130819","GO:0004022","alcohol dehydrogenase (NAD) activity","inferred from electronic annotation",{"$nulls":7},"Coding",7.94,7.94,9.06,4.82,4.48,4.07]
["TC0300000265.rn.1",11.98,7.34,24.933,"up",6.8570034582442e-6,0.000210414381719433,"Eng","endoglin","chr3","+","NM_001010968","coding",11679530,11717485,200,null,497010,"NM_001010968","RefSeq","Rattus norvegicus endoglin (Eng), mRNA.","chr3",100,100,"NM_001010968","Q3KR75","NM_001010968","Rn.187025","adipose tissue| brain| colon| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001010968","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_001010968","GO:0005615","extracellular space","inferred from direct assay","NM_001010968","GO:0005024","transforming growth factor beta-activated receptor activity","not recorded",{"$nulls":3},"ENSRNOT00000071801","Pfam","IPR001507","Zona pellucida domain","Coding",11.95,11.74,12.25,7.35,7.43,7.23]
["TC0300001690.rn.1",8.56,10.8,-4.724,"down",6.88016630111322e-6,0.000210414381719433,"Ttl","tubulin tyrosine ligase","chr3","+","NM_138536","coding",121596771,121626581,110,"3q36",171572,"NM_138536","RefSeq","Rattus norvegicus tubulin tyrosine ligase (Ttl), mRNA.","chr3",100,100,"NM_138536","Q9QXJ0","NM_138536","Rn.205120","brain| connective tissue| dorsal root ganglion| eye| heart| nerve| pancreas| prostate| adult","NM_138536","GO:0000226","microtubule cytoskeleton organization","inferred from electronic annotation",{"$nulls":4},"NM_138536","GO:0004835","tubulin-tyrosine ligase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000024694","Pfam","IPR004344","Tubulin-tyrosine ligase/Tubulin polyglutamylase","Coding",8.78,8.42,8.48,10.43,10.89,11.07]
["TC0800001041.rn.1",11.43,8.25,9.063,"up",6.92237641128119e-6,0.00021133321729414,"Myo1e","myosin IE","chr8","+","NM_173101","coding",76644715,76840565,300,"8q24",25484,"NM_173101","RefSeq","Rattus norvegicus myosin IE (Myo1e), mRNA.","chr8",100,100,"NM_173101","Q63356","NM_173101","Rn.8737","brain| colon| connective tissue| eye| kidney| liver| lung| ovary| placenta| prostate| vibrissa| metamorphosing embryo| juvenile| adult","NM_173101","GO:0001570","vasculogenesis","inferred from electronic annotation","NM_173101","GO:0005737","cytoplasm","not recorded","NM_173101","GO:0003774","motor activity","inferred from electronic annotation",{"$nulls":7},"Coding",11.45,11.26,11.58,8.11,8.56,8.09]
["TC1400001255.rn.1",9.44,8.68,1.693,"up",6.9477700342284e-6,0.000211736339060669,"Rpl5","ribosomal protein L5","chr14","-","NM_031099","coding",2860877,2867446,149,"14p22",81763,"NM_031099","RefSeq","Rattus norvegicus ribosomal protein L5 (Rpl5), mRNA.","chr14",100,100,"NM_031099","P09895","NM_031099","Rn.92980","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_031099","GO:0006364","rRNA processing","not recorded","NM_031099","GO:0005634","nucleus","not recorded","NM_031099","GO:0003735","structural constituent of ribosome","traceable author statement","NM_031099","GenMAPP","Ribosomal_Proteins","ENSRNOT00000030428","Pfam","IPR005484","Ribosomal protein L18/L5","Coding",9.53,9.4,9.38,8.75,8.69,8.6]
["TC1500000769.rn.1",4.43,5.71,-2.428,"down",7.00342441930463e-6,0.000213058643761367,"Egr3","early growth response 3","chr15","+","NM_017086","coding",51756736,51760716,130,"15cen-q11",25148,"NM_017086","RefSeq","Rattus norvegicus early growth response 3 (Egr3), mRNA.","chr15",100,100,"NM_017086","P43301","NM_017086","Rn.44371","lung| testis| adult","NM_017086","GO:0001938","positive regulation of endothelial cell proliferation","inferred from electronic annotation","NM_017086","GO:0005634","nucleus","not recorded","NM_017086","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024067","Pfam","IPR007087","Zinc finger, C2H2","Coding",4.42,4.36,4.5,5.55,5.82,5.75]
["TC0900002375.rn.1",9.37,5.79,11.959,"up",7.01862680397176e-6,0.000213147843027611,"Sp110","SP110 nuclear body protein","chr9","-","NM_001034137","coding",92593909,92618833,157,"9q35",301570,"NM_001034137","RefSeq","Rattus norvegicus SP110 nuclear body protein (Sp110), mRNA.","chr9",100,100,"NM_001034137","Q3KRF1","NM_001034137","Rn.6459","connective tissue| eye| heart| kidney| lung| muscle| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001034137","GO:0006351","transcription, DNA-templated","inferred from electronic annotation","NM_001034137","GO:0005634","nucleus","inferred from electronic annotation","NM_001034137","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000056995","Pfam","IPR000770","SAND domain","Coding",9.12,9.12,9.86,5.74,5.87,5.76]
["TC0400000002.rn.1",6.72,8.22,-2.828,"down",7.06561216154608e-6,0.000214200259787464,"Htr5a","5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled","chr4","+","NM_013148","coding",199358,209599,50,"4q11",25689,"NM_013148","RefSeq","Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled (Htr5a), mRNA.","chr4",100,100,"NM_013148","P35364","NM_013148","Rn.10569",null,"NM_013148","GO:0007187","G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger","inferred from mutant phenotype","NM_013148","GO:0005622","intracellular","not recorded","NM_013148","GO:0004993","serotonin receptor activity","inferred from mutant phenotype","NM_013148","GenMAPP","GPCRDB_Class_A_Rhodopsin-like","ENSRNOT00000009317","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",6.68,6.69,6.8,8.32,8.28,8.05]
["TC1800000606.rn.1",7.89,3.95,15.348,"up",7.08969417693782e-6,0.000214555884229245,"LOC102549198","interferon-inducible GTPase 1-like","chr18","+","ENSRNOT00000074629","coding",55530864,55532650,40,null,100910979,"ENSRNOT00000074629","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:54765845:54767101:1 gene:ENSRNOG00000046839 gene_biotype:protein_coding transcript_biotype:protein_coding","chr18",100,100,"ENSRNOT00000074629","J7PDL5",{"$nulls":3},"ENSRNOT00000074629","GO:0008152","metabolic process","inferred from electronic annotation","ENSRNOT00000074629","GO:0016020","membrane","inferred from electronic annotation","ENSRNOT00000074629","GO:0005525","GTP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000074629","Pfam","IPR007743","Interferon-inducible GTPase","Coding",7.87,7.89,7.92,3.84,4.58,3.42]
["TC0300004604.rn.1",10.41,6.04,20.678,"up",7.17462848358017e-6,0.000216372346160193,"Rbl1","retinoblastoma-like 1 (p107)","chr3","-","NM_001191066","coding",153263692,153321351,238,"3q42",680111,"NM_001191066","RefSeq","Rattus norvegicus retinoblastoma-like 1 (p107) (Rbl1), mRNA.","chr3",100,100,"NM_001191066","D3ZS28","NM_001191066","Rn.148725","brain| colon| embryonic tissue| heart| kidney| lung| ovary| pancreas| prostate| vibrissa|tailbud embryo| metamorphosing embryo| fetus| adult","NM_001191066","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_001191066","GO:0005634","nucleus","inferred from electronic annotation","NM_001191066","GO:0008134","transcription factor binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000064824","Pfam","IPR002719","Retinoblastoma-associated protein, B-box","Coding",10.56,10.09,10.58,5.84,6.09,6.18]
["TC1800001689.rn.1",6.94,9.54,-6.063,"down",7.23450361864702e-6,0.000217222591896659,"Mapk4","mitogen-activated protein kinase 4","chr18","-","NM_019319","coding",69894692,69943650,120,"18q12.2",54268,"NM_019319","RefSeq","Rattus norvegicus mitogen-activated protein kinase 4 (Mapk4), mRNA.","chr18",100,100,"NM_019319","Q63454","NM_019319","Rn.11731","brain| dorsal root ganglion| eye| pancreas| adult","NM_019319","GO:0000165","MAPK cascade","inferred from electronic annotation","NM_019319","GO:0005634","nucleus","inferred from electronic annotation","NM_019319","GO:0004707","MAP kinase activity","inferred from electronic annotation","NM_019319","GenMAPP","Integrin-mediated_cell_adhesion_KEGG","ENSRNOT00000020851","Pfam","IPR000719","Protein kinase domain","Coding",6.96,6.69,7.18,9.53,9.59,9.49]
["TC0500000470.rn.1",4.1,5.55,-2.732,"down",7.24588975644936e-6,0.000217222591896659,"LOC690918","hypothetical protein LOC690918","chr5","+","NM_001109613","coding",56797502,56800759,30,"5q22",690918,"NM_001109613","RefSeq","Rattus norvegicus hypothetical protein LOC690918 (LOC690918), mRNA.","chr5",100,100,"NM_001109613","D3ZI94","NM_001109613","Rn.53377",{"$nulls":20},"Coding",4.07,3.98,4.24,5.54,5.3,5.81]
["TC0700003585.rn.1",10.95,7.55,10.556,"up",7.25284113177494e-6,0.000217222591896659,"Nfam1","NFAT activating protein with ITAM motif 1","chr7","-","ENSRNOT00000037681","coding",123856718,123893797,169,"7q34",362966,"ENSRNOT00000037681","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:7:123842487:123861991:-1 gene:ENSRNOG00000022975 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000037681","F1M0C3",{"$nulls":3},"ENSRNOT00000037681","GO:0007165","signal transduction","not recorded","ENSRNOT00000037681","GO:0009986","cell surface","inferred from electronic annotation","ENSRNOT00000037681","GO:0004888","transmembrane signaling receptor activity","inferred from electronic annotation",{"$nulls":7},"Coding",11.04,10.75,11.05,7.99,7.54,7.13]
["TC0100005007.rn.1",10.68,7.43,9.514,"up",7.31437717680121e-6,0.000218344796526271,"Axl","Axl receptor tyrosine kinase","chr1","-","NM_001013147","coding",82549429,82580761,242,"1q21",308444,"NM_001013147","RefSeq","Rattus norvegicus Axl receptor tyrosine kinase (Axl), transcript variant 2, mRNA.","chr1",100,100,"NM_001013147","E9PSX9","NM_001013147","Rn.161805","adipose tissue| brain| dorsal root ganglion| heart| kidney| ovary| prostate| spleen| thymus| vibrissa| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_001013147","GO:0005615","extracellular space","inferred from electronic annotation","NM_001013147","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000028131","Pfam","IPR000719","Protein kinase domain","Coding",10.46,10.46,11.12,7.53,7.59,7.16]
["TC0400002718.rn.1",6.7,9.14,-5.426,"down",7.31544940292958e-6,0.000218344796526271,"LOC688922","similar to Insulin-induced gene 1 protein (INSIG-1) (Insulin-induced growth response protein CL-6) (Immediate-early protein CL-6)","chr4","-","LOC688922.aSep08-unspliced","coding",66334349,66336976,50,null,"NA","LOC688922.aSep08-unspliced","Ace View","similar to Insulin-induced gene 1 protein (INSIG-1) (Insulin-induced growth response protein CL-6) (Immediate-early protein CL-6)","chr4",100,100,"ENSRNOT00000035326","D4A242",{"$nulls":3},"ENSRNOT00000035326","GO:0008203","cholesterol metabolic process","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000035326","Pfam","IPR025929","Insulin-induced protein family","Coding",7.07,6.56,6.46,9.26,9.43,8.72]
["TC0200000322.rn.1",14.2,12.87,2.514,"up",7.32927239706805e-6,0.000218382145470787,"LOC499522","INTERACTS WITH 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND  benzo[a]pyrene (ortholog) AND  N-nitrosodiethylamine (ortholog)","chr2","+","mRNARGD7554128_1","coding",36490560,36491148,30,null,"NA","mRNARGD7554128_1","Rat Genome Database","INTERACTS WITH 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND  benzo[a]pyrene (ortholog) AND  N-nitrosodiethylamine (ortholog)","chr2",100,100,{"$nulls":24},"Coding",14.23,14.2,14.16,12.8,12.99,12.82]
["TC1500000841.rn.1",6.61,4.57,4.112,"up",7.35178974003621e-6,0.000218677978722892,"RGD1304929","similar to chromosome 13 open reading frame 18","chr15","+","ENSRNOT00000039518","coding",57065512,57109197,201,"15q11",290403,"ENSRNOT00000039518","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:60796204:60814555:1 gene:ENSRNOG00000022760 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000039518","D4A680",{"$nulls":22},"Coding",6.44,6.44,6.95,4.61,4.59,4.5]
["TC0100002044.rn.1",11.1,7.32,13.737,"up",7.41523856587502e-6,0.000220188220731308,"Prcp","prolylcarboxypeptidase (angiotensinase C)","chr1","+","NM_001106281","coding",157700796,157750824,187,"1q32",293118,"NM_001106281","RefSeq","Rattus norvegicus prolylcarboxypeptidase (angiotensinase C) (Prcp), mRNA.","chr1",100,100,"NM_001106281","D4AA31","NM_001106281","Rn.8457","brain| connective tissue| kidney| lung| ovary| placenta| prostate| adult","NM_001106281","GO:0002155","regulation of thyroid hormone mediated signaling pathway","not recorded","NM_001106281","GO:0045178","basal part of cell","not recorded","NM_001106281","GO:0008236","serine-type peptidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000014271","Pfam","IPR000073","Alpha/beta hydrolase fold-1","Coding",11.12,11.06,11.12,7.28,7.56,7.11]
["TC0100002279.rn.1",5.89,9.23,-10.126,"down",7.45191142556928e-6,0.000220693352663592,"Cckbr","cholecystokinin B receptor","chr1","+","NM_013165","coding",170262218,170272460,60,"1q33",25706,"NM_013165","RefSeq","Rattus norvegicus cholecystokinin B receptor (Cckbr), mRNA.","chr1",100,100,"NM_013165","P30553","NM_013165","Rn.90997","brain| juvenile| adult","NM_013165","GO:0001696","gastric acid secretion","inferred from electronic annotation","NM_013165","GO:0005634","nucleus","inferred from direct assay","NM_013165","GO:0015054","gastrin receptor activity","inferred from electronic annotation","NM_013165","GenMAPP","GPCRDB_Class_A_Rhodopsin-like","ENSRNOT00000024077","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",5.94,5.64,6.08,9.38,9.16,9.16]
["TC1300001694.rn.1",12.74,8.26,22.316,"up",7.45765920289728e-6,0.000220693352663592,"Soat1","sterol O-acyltransferase 1","chr13","-","NM_031118","coding",74031576,74078205,200,"13q21",81782,"NM_031118","RefSeq","Rattus norvegicus sterol O-acyltransferase 1 (Soat1), mRNA.","chr13",100,100,"NM_031118","O70536","NM_031118","Rn.59","brain| colon| embryonic tissue| eye| heart| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_031118","GO:0008203","cholesterol metabolic process","inferred from electronic annotation","NM_031118","GO:0005783","endoplasmic reticulum","not recorded","NM_031118","GO:0000062","fatty-acyl-CoA binding","inferred from electronic annotation","NM_031118","GenMAPP","Statin_Pathway_PharmGKB","ENSRNOT00000005677","Pfam","IPR004299","Membrane bound O-acyl transferase, MBOAT","Coding",12.96,12.34,12.91,8.28,8.41,8.09]
["TC0900002464.rn.1",6.04,7.04,-2,"down",7.48120429959278e-6,0.000221013605252085,"Per2","period circadian clock 2","chr9","-","NM_031678","coding",98555154,98597352,265,"9q36",63840,"NM_031678","RefSeq","Rattus norvegicus period circadian clock 2 (Per2), mRNA.","chr9",100,100,"NM_031678","Q9Z301","NM_031678","Rn.25935","brain| colon| heart| ovary| pancreas| pituitary gland| fetus| adult","NM_031678","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from direct assay","NM_031678","GO:0005634","nucleus","inferred from direct assay","NM_031678","GO:0000976","transcription regulatory region sequence-specific DNA binding","inferred from sequence or structural similarity",{"$nulls":3},"ENSRNOT00000027506","Pfam","IPR013655","PAS fold-3","Coding",6.04,6.04,6.04,7,6.93,7.2]
["TC1700001130.rn.1",6.5,7.55,-2.071,"down",7.6096782424848e-6,0.000223304440066222,"Thnsl1","threonine synthase-like 1 (S. cerevisiae)","chr17","+","NM_001025035","coding",88094791,88103224,70,"17q12.3",498805,"NM_001025035","RefSeq","Rattus norvegicus threonine synthase-like 1 (S. cerevisiae) (Thnsl1), mRNA.","chr17",100,100,"NM_001025035","E9PTK4","NM_001025035","Rn.198366","brain| connective tissue| prostate| testis| thymus| juvenile| adult","NM_001025035","GO:0008150","biological_process","no biological data available","NM_001025035","GO:0005634","nucleus","not recorded","NM_001025035","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000045984","Pfam","IPR000623","Shikimate kinase/Threonine synthase-like 1","Coding",6.49,6.41,6.59,7.5,7.72,7.43]
["TC1400000938.rn.1",12.11,7.04,33.591,"up",7.61016801100705e-6,0.000223304440066222,"Aebp1","AE binding protein 1","chr14","+","NM_001100970","coding",86101268,86111327,233,"14q21",305494,"NM_001100970","RefSeq","Rattus norvegicus AE binding protein 1 (Aebp1), mRNA.","chr14",100,100,"NM_001100970","A2RUV9","NM_001100970","Rn.37157","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| liver| lung| muscle| pituitary gland| prostate| spleen| vibrissa|tailbud embryo| juvenile| adult","NM_001100970","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","not recorded","NM_001100970","GO:0005615","extracellular space","inferred from electronic annotation","NM_001100970","GO:0000977","RNA polymerase II regulatory region sequence-specific DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000018846","Pfam","IPR000421","Coagulation factor 5/8 C-terminal type domain","Coding",12.17,12.14,12.03,7.11,6.98,7.04]
["TC0X00000620.rn.1",12.43,11.12,2.479,"up",7.63167526236315e-6,0.000223419460993808,"Nono","non-POU domain containing, octamer-binding","chrX","+","NM_001012356","coding",71324327,71342235,180,"Xq31",317259,"NM_001012356","RefSeq","Rattus norvegicus non-POU domain containing, octamer-binding (Nono), mRNA.","chrX",100,100,"NM_001012356","Q5FVM4","NM_001012356","Rn.8381","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001012356","GO:0006281","DNA repair","inferred from electronic annotation","NM_001012356","GO:0005634","nucleus","not recorded","NM_001012356","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000004911","Pfam","IPR000504","RNA recognition motif domain","Coding",12.53,12.34,12.43,11.17,11.14,11.05]
["TC1900000477.rn.1",4.6,5.21,-1.526,"down",7.63981116978424e-6,0.000223419460993808,"Slc9a5","solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5","chr19","+","NM_138858","coding",37303973,37325345,260,"19q11",192215,"NM_138858","RefSeq","Rattus norvegicus solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5 (Slc9a5), mRNA.","chr19",100,100,"NM_138858","Q9Z0X2","NM_138858","Rn.24105","brain| kidney| ovary| prostate| adult","NM_138858","GO:0006814","sodium ion transport","inferred from direct assay","NM_138858","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_138858","GO:0015385","sodium:proton antiporter activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000068299","Pfam","IPR006153","Cation/H+ exchanger","Coding",4.57,4.6,4.64,5.19,5.15,5.29]
["TC0200003011.rn.1",11.27,5.86,42.518,"up",7.73357891054228e-6,0.000225697171527874,"C7","Unannotated AceView Transcript","chr2","-","Ldl_recept_a.8.aSep08","coding",54707621,54781612,200,null,"NA","Ldl_recept_a.8.aSep08","Ace View","Unannotated AceView Transcript","chr2",100,100,{"$nulls":24},"Coding",11.8,11.47,10.53,5.49,5.96,6.12]
["TC0500003532.rn.1",9.7,8.22,2.789,"up",7.74921237262192e-6,0.000225697171527874,"LOC680700","similar to ribosomal protein L10a","chr5","-","ENSRNOT00000015278","coding",139932965,139933789,38,"5q36",680700,"ENSRNOT00000015278","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:143726192:143726968:-1 gene:ENSRNOG00000011484 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000015278","F1LYQ7","ENSRNOT00000015278","Rn.192843","heart| liver| pancreas","ENSRNOT00000015278","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000015278","GO:0015934","large ribosomal subunit","inferred from electronic annotation","ENSRNOT00000015278","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000015278","Pfam","IPR002143","Ribosomal protein L1","Coding",9.8,9.46,9.83,8.25,8.18,8.24]
["TC0500003074.rn.1",12.06,11.34,1.647,"up",7.75667557435615e-6,0.000225697171527874,"Rps6","ribosomal protein S6","chr5","-","NM_017160","coding",105197611,105212789,166,"5q22-q23",29304,"NM_017160","RefSeq","Rattus norvegicus ribosomal protein S6 (Rps6), mRNA.","chr5",100,100,"NM_017160","P62755","NM_017160","Rn.34341","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_017160","GO:0000028","ribosomal small subunit assembly","inferred from mutant phenotype","NM_017160","GO:0005634","nucleus","not recorded","NM_017160","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000010383","Pfam","IPR001377","Ribosomal protein S6e","Coding",12.08,12.02,12.07,11.42,11.35,11.25]
["TC0200003831.rn.1",11,6.06,30.696,"up",7.78523371968947e-6,0.000226149322650043,"Rarres1","retinoic acid receptor responder (tazarotene induced) 1","chr2","-","NM_001014790","coding",164650722,164685177,70,"2q31",310486,"NM_001014790","RefSeq","Rattus norvegicus retinoic acid receptor responder (tazarotene induced) 1 (Rarres1), mRNA.","chr2",100,100,"NM_001014790","Q58NB7","NM_001014790","Rn.16737","connective tissue| dorsal root ganglion| eye| liver| lung| muscle| placenta| prostate| spleen| thymus| juvenile| adult","NM_001014790","GO:0008285","negative regulation of cell proliferation","inferred from electronic annotation","NM_001014790","GO:0070062","extracellular vesicular exosome","not recorded",{"$nulls":7},"ENSRNOT00000057504","Pfam","IPR009684","Proteinase inhibitor I47, latexin","Coding",11.58,10.58,10.84,5.97,6.15,6.05]
["TC0400004119.rn.1",8.4,10.71,-4.959,"down",7.8013646863059e-6,0.000226239575902871,"Tmtc1","transmembrane and tetratricopeptide repeat containing 1","chr4","-","ENSRNOT00000002535","coding",182625042,182844381,270,"4q44",362465,"ENSRNOT00000002535","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:246760019:246960998:-1 gene:ENSRNOG00000001854 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000002535","D4A9Y4",{"$nulls":7},"ENSRNOT00000002535","GO:0005739","mitochondrion","inferred from electronic annotation","ENSRNOT00000002535","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002535","Pfam","IPR001440","Tetratricopeptide TPR1","Coding",8.22,8.51,8.47,10.71,10.69,10.74]
["TC1800000324.rn.1",5.37,6.65,-2.428,"down",7.89834228799642e-6,0.000228289690324103,"Pcdha4","protocadherin alpha 4","chr18","+","NM_053933","coding",29951054,30215897,280,"18p11",116741,"NM_053933","RefSeq","Rattus norvegicus protocadherin alpha 4 (Pcdha4), mRNA.","chr18",100,100,"NM_053933","Q767I8","NM_053933","Rn.22308","adrenal gland| brain| dorsal root ganglion| embryonic tissue| kidney| lung| muscle| ovary| pancreas| pineal gland| metamorphosing embryo| juvenile| adult","NM_053933","GO:0007156","homophilic cell adhesion","inferred from electronic annotation","NM_053933","GO:0005783","endoplasmic reticulum","not recorded","NM_053933","GO:0005509","calcium ion binding","inferred from electronic annotation","NM_053933","GenMAPP","GPCRDB_Other","ENSRNOT00000027340","Pfam","IPR002126","Cadherin","Coding",5.39,5.4,5.32,6.76,6.43,6.75]
["TC1300000156.rn.1",10.31,7.7,6.105,"up",7.93438817826636e-6,0.00022895059309745,"Ccdc93","coiled-coil domain containing 93","chr13","+","NM_001024997","coding",37400476,37468928,286,"13q11",304743,"NM_001024997","RefSeq","Rattus norvegicus coiled-coil domain containing 93 (Ccdc93), mRNA.","chr13",100,100,"NM_001024997","Q5BJT7","NM_001024997","Rn.79004","brain| colon| connective tissue| prostate| testis| juvenile| adult",{"$nulls":15},"ENSRNOT00000003435","Pfam","IPR019159","Protein of unknown function DUF2037","Coding",10.1,10.1,10.74,7.69,7.78,7.64]
["TC0800000546.rn.1",6.27,8.25,-3.945,"down",7.9536345734235e-6,0.000228966880551075,"Pvrl1","poliovirus receptor-related 1","chr8","+","ENSRNOT00000008614","coding",48094812,48157321,112,"8q22",192183,"ENSRNOT00000008614","ENSEMBL","ensembl:known chromosome:Rnor_5.0:8:46715098:46774064:1 gene:ENSRNOG00000006403 gene_biotype:protein_coding transcript_biotype:protein_coding","chr8",100,100,"ENSRNOT00000008614","F1LNP8","ENSRNOT00000008614","Rn.156563","brain| eye| pineal gland| adult","ENSRNOT00000008614","GO:0002089","lens morphogenesis in camera-type eye","inferred from electronic annotation","ENSRNOT00000008614","GO:0005886","plasma membrane","inferred from direct assay","ENSRNOT00000008614","GO:0004872","receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008614","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",6.39,6.21,6.22,8.4,8.23,8.13]
["TC1600000591.rn.1",10.41,5.98,21.556,"up",8.00457879384982e-6,0.000228966880551075,"Tlr3","toll-like receptor 3","chr16","+","NM_198791","coding",50016533,50031011,160,"16q11",364594,"NM_198791","RefSeq","Rattus norvegicus toll-like receptor 3 (Tlr3), mRNA.","chr16",100,100,"NM_198791","F1LN63","NM_198791","Rn.15273","dorsal root ganglion| ovary| juvenile| adult","NM_198791","GO:0001774","microglial cell activation","inferred from direct assay","NM_198791","GO:0005622","intracellular","inferred from direct assay","NM_198791","GO:0003725","double-stranded RNA binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000035781","Pfam","IPR000157","Toll/interleukin-1 receptor homology (TIR) domain","Coding",10.36,10.14,10.74,5.91,6.02,6.02]
["TC0500003821.rn.1",6.18,7.29,-2.158,"down",8.02052575023088e-6,0.000228966880551075,"Ephb2","Eph receptor B2","chr5","-","NM_001127319","coding",153012489,155204434,220,"5q36",313633,"NM_001127319","RefSeq","Rattus norvegicus Eph receptor B2 (Ephb2), mRNA.","chr5",100,100,"NM_001127319","B2B9B0","NM_001127319","Rn.229866","eye| pituitary gland| prostate| spleen| thymus| adult","NM_001127319","GO:0000902","cell morphogenesis","not recorded","NM_001127319","GO:0005887","integral component of plasma membrane","inferred from electronic annotation","NM_001127319","GO:0004713","protein tyrosine kinase activity","not recorded",{"$nulls":3},"ENSRNOT00000016983","Pfam","IPR000719","Protein kinase domain","Coding",6.19,6.15,6.19,7.26,7.45,7.15]
["TC0900002721.rn.1",5.31,6.58,-2.412,"down",8.03119353106768e-6,0.000228966880551075,"Chpf","chondroitin polymerizing factor","chr9","-","NM_001005906","coding",82669197,82674034,70,"9q33",316533,"NM_001005906","RefSeq","Rattus norvegicus chondroitin polymerizing factor (Chpf), mRNA.","chr9",100,100,"NM_001005906","Q5XIQ8","NM_001005906","Rn.3794","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| heart| kidney| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus| metamorphosing embryo| juvenile| adult","NM_001005906","GO:0008152","metabolic process","inferred from electronic annotation","NM_001005906","GO:0032580","Golgi cisterna membrane","inferred from electronic annotation","NM_001005906","GO:0016758","transferase activity, transferring hexosyl groups","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000027165","Pfam","IPR008428","Chondroitin N-acetylgalactosaminyltransferase","Coding",5.45,5.09,5.39,6.59,6.68,6.46]
["TC0100003121.rn.1",9.63,6.65,7.89,"up",8.04285811186299e-6,0.000228966880551075,"Ppp1r14b","protein phosphatase 1, regulatory (inhibitor) subunit 14B","chr1","+","NM_172045","coding",222229834,222231946,49,"1q43",259225,"NM_172045","RefSeq","Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 14B (Ppp1r14b), mRNA.","chr1",100,100,"NM_172045","Q8K3F3","NM_172045","Rn.2773","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| muscle| nerve| ovary| pancreas| placenta| prostate| small intestine| metamorphosing embryo| fetus| adult","NM_172045","GO:0042325","regulation of phosphorylation","inferred from electronic annotation","NM_172045","GO:0005737","cytoplasm","inferred from electronic annotation","NM_172045","GO:0004864","protein phosphatase inhibitor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051749","Pfam","IPR008025","PKC-activated phosphatase-1 inhibitor","Coding",9.94,9.42,9.53,6.5,6.88,6.56]
["TC1500001555.rn.1",7.52,5.16,5.134,"up",8.04997237755891e-6,0.000228966880551075,"Tep1","telomerase associated protein 1","chr15","-","NM_022591","coding",27751179,27798839,617,"15p14",64523,"NM_022591","RefSeq","Rattus norvegicus telomerase associated protein 1 (Tep1), mRNA.","chr15",100,100,"NM_022591","O08653","NM_022591","Rn.5890","adipose tissue| adrenal gland| brain| connective tissue| embryonic tissue| heart| liver| lung| ovary| pancreas| pituitary gland| prostate| spleen| metamorphosing embryo| juvenile| adult","NM_022591","GO:0000722","telomere maintenance via recombination","inferred from electronic annotation","NM_022591","GO:0000781","chromosome, telomeric region","inferred from electronic annotation","NM_022591","GO:0003720","telomerase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012235","Pfam","IPR001680","WD40 repeat","Coding",7.38,7.38,7.81,5.16,5.2,5.12]
["TC0900002718.rn.1",7.28,6.16,2.173,"up",8.07358867106675e-6,0.000228966880551075,"Tmbim1","transmembrane BAX inhibitor motif containing 1","chr9","-","NM_001007713","coding",81569289,81586502,253,"9q33",316516,"NM_001007713","RefSeq","Rattus norvegicus transmembrane BAX inhibitor motif containing 1 (Tmbim1), mRNA.","chr9",100,100,"NM_001007713","Q6AYE0","NM_001007713","Rn.204023","brain| dorsal root ganglion| heart| lung| ovary| pituitary gland| placenta| prostate| spleen| testis| juvenile| adult","NM_001007713","GO:0048553","negative regulation of metalloenzyme activity","inferred from sequence or structural similarity","NM_001007713","GO:0005765","lysosomal membrane","inferred from electronic annotation","NM_001007713","GO:0005123","death receptor binding","not recorded",{"$nulls":3},"ENSRNOT00000019848","Pfam","IPR006214","Bax inhibitor 1-related","Coding",7.28,7.28,7.28,6.24,6.11,6.13]
["TC0X00001043.rn.1",12.19,7.45,26.723,"up",8.09854698620725e-6,0.000228966880551075,"Il13ra1","interleukin 13 receptor, alpha 1","chrX","+","NM_145789","coding",122724081,122783805,110,"Xq12",252963,"NM_145789","RefSeq","Rattus norvegicus interleukin 13 receptor, alpha 1 (Il13ra1), mRNA.","chrX",100,100,"NM_145789","Q561K3","NM_145789","Rn.81210","liver| juvenile","NM_145789","GO:0002639","positive regulation of immunoglobulin production","inferred from direct assay","NM_145789","GO:0016020","membrane","inferred from electronic annotation","NM_145789","GO:0016515","interleukin-13 receptor activity","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000017746","Pfam","IPR015321","Interleukin-6 receptor alpha, binding","Coding",12.26,12.11,12.19,7.44,7.54,7.36]
["TC0500004199.rn.1",4.76,7.28,-5.736,"down",8.15132010814757e-6,0.000228966880551075,"Gabrd","gamma-aminobutyric acid (GABA) A receptor, delta","chr5","-","NM_017289","coding",172797453,172809378,94,"5q36",29689,"NM_017289","RefSeq","Rattus norvegicus gamma-aminobutyric acid (GABA) A receptor, delta (Gabrd), mRNA.","chr5",100,100,"NM_017289","P18506","NM_017289","Rn.10927","brain","NM_017289","GO:0007165","signal transduction","inferred from direct assay","NM_017289","GO:0030054","cell junction","inferred from electronic annotation","NM_017289","GO:0004890","GABA-A receptor activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000022246","Pfam","IPR006029","Neurotransmitter-gated ion-channel transmembrane domain","Coding",4.91,4.62,4.75,7.2,7.44,7.2]
["TC2000001198.rn.1",11.56,10.72,1.79,"up",8.15290255977044e-6,0.000228966880551075,"Rps10","ribosomal protein S10","chr20","-","ENSRNOT00000033907","coding",7215752,7220469,105,"20p12",81773,"ENSRNOT00000033907","ENSEMBL","ensembl:known chromosome:Rnor_5.0:20:9418122:9422687:-1 gene:ENSRNOG00000000490 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000033907","P63326","ENSRNOT00000033907","Rn.224517","adrenal gland| liver| vibrissa","ENSRNOT00000033907","GO:0000028","ribosomal small subunit assembly","inferred from mutant phenotype","ENSRNOT00000033907","GO:0005730","nucleolus","not recorded","ENSRNOT00000033907","GO:0003735","structural constituent of ribosome","inferred from mutant phenotype",{"$nulls":3},"ENSRNOT00000033907","Pfam","IPR005326","Plectin/S10, N-terminal","Coding",11.54,11.54,11.59,10.8,10.74,10.63]
["TC0100000233.rn.1",13.35,7.5,57.68,"up",8.15630238242197e-6,0.000228966880551075,"Enpp1","ectonucleotide pyrophosphatase/phosphodiesterase 1","chr1","+","NM_053535","coding",21748217,21813205,279,"1p12",85496,"NM_053535","RefSeq","Rattus norvegicus ectonucleotide pyrophosphatase/phosphodiesterase 1 (Enpp1), mRNA.","chr1",100,100,"NM_053535","Q924C3","NM_053535","Rn.1199","brain| colon| connective tissue| muscle| ovary| pancreas| pineal gland| placenta| prostate| fetus| juvenile| adult","NM_053535","GO:0006091","generation of precursor metabolites and energy","inferred from electronic annotation","NM_053535","GO:0005576","extracellular region","inferred from electronic annotation","NM_053535","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019519","Pfam","IPR001212","Somatomedin B domain","Coding",13.35,13.29,13.4,7.63,7.54,7.34]
["TC0400002406.rn.1",13.16,11.64,2.868,"up",8.1590293627952e-6,0.000228966880551075,"Pon2","paraoxonase 2","chr4","-","NM_001013082","coding",30344701,30380238,160,"4q13",296851,"NM_001013082","RefSeq","Rattus norvegicus paraoxonase 2 (Pon2), mRNA.","chr4",100,100,"NM_001013082","Q6AXM8","NM_001013082","Rn.1100","adipose tissue| brain| dorsal root ganglion| eye| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| juvenile| adult","NM_001013082","GO:0006979","response to oxidative stress","inferred from expression pattern","NM_001013082","GO:0005576","extracellular region","inferred from electronic annotation","NM_001013082","GO:0004064","arylesterase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000036460","Pfam","IPR002640","Arylesterase","Coding",13.25,13,13.23,11.75,11.82,11.34]
["TC0700003346.rn.1",5.23,7.09,-3.63,"down",8.20247857577324e-6,0.00022981492796735,"Cyp11b3","cytochrome P450, family 11, subfamily b, polypeptide 3","chr7","-","NM_181824","coding",116156191,116161708,94,"7q34",353498,"NM_181824","RefSeq","Rattus norvegicus cytochrome P450, family 11, subfamily b, polypeptide 3 (Cyp11b3), mRNA.","chr7",100,100,"NM_181824","D3ZCW0","NM_181824","Rn.198236",null,"NM_181824","GO:0006694","steroid biosynthetic process","inferred from electronic annotation","NM_181824","GO:0005739","mitochondrion","inferred from electronic annotation","NM_181824","GO:0004497","monooxygenase activity","inferred from electronic annotation","ENSRNOT00000068707","GenMAPP","Glucocorticoid_Mineralocorticoid_Metabolism","ENSRNOT00000068707","Pfam","IPR001128","Cytochrome P450","Coding",5.22,5.36,5.11,6.93,7.05,7.28]
["TC1000004329.rn.1",11.88,10.88,2,"up",8.24012335365317e-6,0.000230287277846306,"Rpl5l1","ribosomal protein L5-like 1","chr10","-","ENSRNOT00000056238","coding",112564193,112565154,30,null,501206,"ENSRNOT00000056238","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:112140976:112141869:-1 gene:ENSRNOG00000037220 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000056238","D3ZHP8",{"$nulls":3},"ENSRNOT00000056238","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000056238","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000056238","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000056238","Pfam","IPR005484","Ribosomal protein L18/L5","Coding",11.96,11.8,11.89,10.85,11.04,10.76]
["TC0400003707.rn.1",11.01,5.56,43.713,"up",8.24724455230267e-6,0.000230287277846306,"Clec4a3","C-type lectin domain family 4, member A3","chr4","-","NM_001005891","coding",155913005,155923236,98,"4q42",362431,"NM_001005891","RefSeq","Rattus norvegicus C-type lectin domain family 4, member A3 (Clec4a3), mRNA.","chr4",100,100,"NM_001005891","E9PT25","NM_001005891","Rn.137522","connective tissue| dorsal root ganglion| eye| kidney| liver| lung| adult",{"$nulls":8},"NM_001005891","GO:0030246","carbohydrate binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000013308","Pfam","IPR001304","C-type lectin","Coding",11.36,10.83,10.83,5.68,5.48,5.52]
["TC0100007128.rn.1",9.06,6.06,8,"up",8.29288531886441e-6,0.000230858511016015,"Sipa1","signal-induced proliferation-associated 1","chr1","-","NM_001004089","coding",221006301,221018387,212,"1q43",361710,"NM_001004089","RefSeq","Rattus norvegicus signal-induced proliferation-associated 1 (Sipa1), mRNA.","chr1",100,100,"NM_001004089","E9PSX8","NM_001004089","Rn.24935","brain| connective tissue| embryonic tissue| heart| kidney| lung| placenta| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001004089","GO:0042631","cellular response to water deprivation","inferred from direct assay","NM_001004089","GO:0030133","transport vesicle","inferred from direct assay","NM_001004089","GO:0005096","GTPase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000028137","Pfam","IPR000331","Rap GTPase activating protein domain","Coding",8.78,8.78,9.62,6.21,5.97,6]
["TC0100004678.rn.1",12.35,10.65,3.249,"up",8.31827141239977e-6,0.000230889287275938,"Rps5","ribosomal protein S5","chr1","-","NM_001277243","coding",65660470,65664838,82,"1q21",25538,"NM_001277243","RefSeq","Rattus norvegicus ribosomal protein S5 (Rps5), transcript variant 1, mRNA.","chr1",100,100,"NM_001277243","B0BN81","NM_001277243","Rn.203028","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa| metamorphosing embryo| juvenile| adult","NM_001277243","GO:0006412","translation","inferred from electronic annotation","NM_001277243","GO:0022627","cytosolic small ribosomal subunit","inferred from direct assay","NM_001277243","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000026528","Pfam","IPR023798","Ribosomal protein S7 domain","Coding",12.37,12.17,12.5,10.81,10.75,10.4]
["TC0500000590.rn.1",11.11,9.74,2.585,"up",8.32233605598074e-6,0.000230889287275938,"Anp32b","acidic (leucine-rich) nuclear phosphoprotein 32 family, member B","chr5","+","NM_131911","coding",62071346,62094762,95,"5q22",170724,"NM_131911","RefSeq","Rattus norvegicus acidic (leucine-rich) nuclear phosphoprotein 32 family, member B (Anp32b), mRNA.","chr5",100,100,"NM_131911","Q9EST6","NM_131911","Rn.20465","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_131911","GO:0001944","vasculature development","not recorded","NM_131911","GO:0005634","nucleus","inferred from electronic annotation","NM_131911","GO:0042393","histone binding","not recorded",{"$nulls":7},"Coding",11.26,11.01,11.07,9.99,9.68,9.56]
["TC1100001481.rn.1",11.59,7.63,15.562,"up",8.35597952001795e-6,0.00023113331248763,"LOC100912122","high mobility group protein B2-like","chr11","-","mRNARGD6488627_1","coding",48111238,48111786,30,null,"NA","mRNARGD6488627_1","Rat Genome Database","high mobility group protein B2-like","chr11",100,100,{"$nulls":24},"Coding",11.55,10.98,12.24,7.58,7.71,7.61]
["TC1300000737.rn.1",10.26,5.7,23.588,"up",8.40014061169508e-6,0.000231660908069955,"Sh2d1b","SH2 domain containing 1B","chr13","+","ENSRNOT00000048692","coding",88605341,88623787,90,"13q24",501869,"ENSRNOT00000048692","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:93232943:93248518:1 gene:ENSRNOG00000031599 gene_biotype:protein_coding transcript_biotype:protein_coding","chr13",100,100,"ENSRNOT00000048692","D4A9E3",{"$nulls":3},"ENSRNOT00000048692","GO:0002366","leukocyte activation involved in immune response","not recorded","ENSRNOT00000048692","GO:0005622","intracellular","not recorded","ENSRNOT00000048692","GO:0001784","phosphotyrosine binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000048692","Pfam","IPR000980","SH2 domain","Coding",10.36,9.8,10.62,5.31,5.94,5.84]
["TC0200000390.rn.1",13.55,10.94,6.105,"up",8.42232531486665e-6,0.000231660908069955,"Il6st","interleukin 6 signal transducer","chr2","+","NM_001008725","coding",44278748,44323110,339,"2q14-q16",25205,"NM_001008725","RefSeq","Rattus norvegicus interleukin 6 signal transducer (Il6st), mRNA.","chr2",100,100,"NM_001008725","P40190","NM_001008725","Rn.12138","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001008725","GO:0005977","glycogen metabolic process","inferred from electronic annotation","NM_001008725","GO:0005615","extracellular space","inferred from electronic annotation","NM_001008725","GO:0004897","ciliary neurotrophic factor receptor activity","not recorded",{"$nulls":3},"ENSRNOT00000018877","Pfam","IPR003961","Fibronectin, type III","Coding",13.37,13.39,13.88,10.96,10.98,10.89]
["TC0100000668.rn.1",5.07,6.13,-2.085,"down",8.444943496056e-6,0.000231660908069955,"LOC102548728","zinc finger protein 845-like","chr1","+","mRNARGD7537352_1","coding",61763472,61791771,100,null,"NA","mRNARGD7537352_1","Rat Genome Database","zinc finger protein 845-like","chr1",100,100,{"$nulls":24},"Coding",5.06,5.13,5.01,6.29,5.97,6.13]
["TC0900001015.rn.1",8.82,5.13,12.906,"up",8.45268489696937e-6,0.000231660908069955,"Sp140","SP140 nuclear body protein","chr9","+","NM_001012133","coding",90930880,92665431,289,"9q35",316580,"NM_001012133","RefSeq","Rattus norvegicus SP140 nuclear body protein (Sp140), mRNA.","chr9",100,100,"NM_001012133","Q66H87","NM_001012133","Rn.27561","brain| heart| lung| pineal gland| spleen| juvenile| adult",{"$nulls":4},"NM_001012133","GO:0005730","nucleolus","inferred from electronic annotation","NM_001012133","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000034603","Pfam","IPR000770","SAND domain","Coding",8.63,8.73,9.1,5.11,5.11,5.17]
["TC0100004375.rn.1",7.88,8.47,-1.505,"down",8.46631688449532e-6,0.000231660908069955,"Mtrf1l","mitochondrial translational release factor 1-like","chr1","-","NM_001025723","coding",42475791,42485999,110,"1p11",361473,"NM_001025723","RefSeq","Rattus norvegicus mitochondrial translational release factor 1-like (Mtrf1l), mRNA.","chr1",100,100,"NM_001025723","Q4V7E5","NM_001025723","Rn.205194","brain| heart| kidney| lung| placenta| prostate| adult","NM_001025723","GO:0006415","translational termination","inferred from electronic annotation","NM_001025723","GO:0005739","mitochondrion","inferred from electronic annotation","NM_001025723","GO:0016149","translation release factor activity, codon specific","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025398","Pfam","IPR000352","Peptide chain release factor class I/class II","Coding",7.84,7.89,7.91,8.47,8.53,8.41]
["TC0300003797.rn.1",15.67,14.83,1.79,"up",8.48174184171845e-6,0.000231660908069955,"Eif3m","eukaryotic translation initiation factor 3, subunit M","chr3","-","NM_001168523","coding",94990077,95007949,140,"3q32",295975,"NM_001168523","RefSeq","Rattus norvegicus eukaryotic translation initiation factor 3, subunit M (Eif3m), mRNA.","chr3",100,100,"NM_001168523","D3ZAZ0","NM_001168523","Rn.3390","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001168523","GO:0001731","formation of translation preinitiation complex","inferred from electronic annotation","NM_001168523","GO:0005852","eukaryotic translation initiation factor 3 complex","not recorded","NM_001168523","GO:0003743","translation initiation factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017409","Pfam","IPR000717","Proteasome component (PCI) domain","Coding",15.74,15.59,15.68,14.86,14.93,14.7]
["TC0600001813.rn.1",11.19,8.64,5.856,"up",8.51541080041772e-6,0.000231851412247737,"Zfp36l2","zinc finger protein 36, C3H type-like 2","chr6","-","ENSRNOT00000006725","coding",7417416,7421750,46,"6q12",298765,"ENSRNOT00000006725","ENSEMBL","ensembl:known chromosome:Rnor_5.0:6:7357987:7362018:-1 gene:ENSRNOG00000005067 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000006725","D3ZHK9","ENSRNOT00000006725","Rn.22055","adipose tissue| brain| colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| nerve| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000006725","GO:0000288","nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay","not recorded","ENSRNOT00000006725","GO:0005634","nucleus","not recorded","ENSRNOT00000006725","GO:0017091","AU-rich element binding","not recorded",{"$nulls":3},"ENSRNOT00000006725","Pfam","IPR000571","Zinc finger, CCCH-type","Coding",11.05,11.11,11.42,8.48,8.98,8.46]
["TC1100000892.rn.1",7.08,8.59,-2.848,"down",8.54003793941521e-6,0.000232158057974306,"Etv5","ets variant 5","chr11","+","NM_001107082","coding",82193902,82252145,172,"11q23",303828,"NM_001107082","RefSeq","Rattus norvegicus ets variant 5 (Etv5), mRNA.","chr11",100,100,"NM_001107082","D4AC56","NM_001107082","Rn.18397","adrenal gland| brain| connective tissue| embryonic tissue| heart| lung| muscle| placenta| prostate| metamorphosing embryo| fetus| adult","NM_001107082","GO:0006357","regulation of transcription from RNA polymerase II promoter","not recorded","NM_001107082","GO:0005634","nucleus","not recorded","NM_001107082","GO:0000977","RNA polymerase II regulatory region sequence-specific DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000002445","Pfam","IPR000418","Ets domain","Coding",7.11,6.87,7.26,8.39,8.61,8.78]
["TC0800001218.rn.1",7.83,4.73,8.574,"up",8.55945064029652e-6,0.000232226983625811,"Ttk","Ttk protein kinase","chr8","+","NM_001108172","coding",91368124,91405995,305,"8q31",315852,"NM_001108172","RefSeq","Rattus norvegicus Ttk protein kinase (Ttk), mRNA.","chr8",100,100,"NM_001108172","D4A4S7","NM_001108172","Rn.107533","brain| colon| connective tissue| embryonic tissue| liver| prostate| metamorphosing embryo| fetus| juvenile| adult","NM_001108172","GO:0006468","protein phosphorylation","inferred from electronic annotation",{"$nulls":4},"NM_001108172","GO:0004674","protein serine/threonine kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051612","Pfam","IPR000719","Protein kinase domain","Coding",7.7,7.64,8.16,4.86,4.69,4.65]
["TC0400003098.rn.1",10.32,8.87,2.732,"up",8.85515066899052e-6,0.000234533178672292,"Tmsb10","thymosin, beta 10","chr4","-","NM_021261","coding",100882203,100883295,68,"4q33",50665,"NM_021261","RefSeq","Rattus norvegicus thymosin, beta 10 (Tmsb10), mRNA.","chr4",100,100,"NM_021261","P63312","NM_021261","Rn.5983","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| lung| nerve| ovary| pancreas| prostate| spleen| metamorphosing embryo| adult","NM_021261","GO:0007286","spermatid development","traceable author statement","NM_021261","GO:0005737","cytoplasm","inferred from electronic annotation","NM_021261","GO:0003785","actin monomer binding","traceable author statement",{"$nulls":3},"ENSRNOT00000022846","Pfam","IPR001152","Thymosin beta-4","Coding",10.29,10.28,10.4,9.03,9.05,8.54]
["TC0900000917.rn.1",4.84,6.99,-4.438,"down",9.58429575368147e-6,0.000244836472848825,"Cdk5r2","cyclin-dependent kinase 5, regulatory subunit 2 (p39)","chr9","+","NM_001109309","coding",82119940,82122346,30,"9q33",501164,"NM_001109309","RefSeq","Rattus norvegicus cyclin-dependent kinase 5, regulatory subunit 2 (p39) (Cdk5r2), mRNA.","chr9",100,100,"NM_001109309","F1M491","NM_001109309","Rn.219411","brain| nerve| adult","NM_001109309","GO:0001764","neuron migration","inferred from electronic annotation","NM_001109309","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001109309","GO:0016534","cyclin-dependent protein kinase 5 activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000057368","Pfam","IPR004944","Cyclin-dependent kinase 5 activator","Coding",4.76,4.74,5.03,6.8,7.23,6.95]
["TSUnmapped00000076.rn.1",15.22,14.41,1.753,"up",1.0041571723831e-5,0.000251274495274998,"Rpl9","ribosomal protein L9",null,null,"NM_001007598","coding","NA","NA",30,"14p11",29257,"NM_001007598","RefSeq","Rattus norvegicus ribosomal protein L9 (Rpl9), mRNA.",null,100,100,"NM_001007598","P17077","NM_001007598","Rn.107914","adrenal gland| brain| dorsal root ganglion| embryonic tissue| eye| heart| lung| ovary| pancreas| pituitary gland| spleen| vibrissa| metamorphosing embryo| juvenile| adult","NM_001007598","GO:0006412","translation","inferred from electronic annotation","NM_001007598","GO:0005634","nucleus","not recorded","NM_001007598","GO:0003735","structural constituent of ribosome","inferred from electronic annotation","NM_001007598","GenMAPP","Ribosomal_Proteins",{"$nulls":4},"Coding",15.16,15.19,15.32,14.46,14.48,14.28]
["TC1300001597.rn.1",10.9,7.17,13.269,"up",1.12707337768368e-5,0.000268197145804701,"LOC100911675","cytosolic phospholipase A2-like","chr13","-","mRNARGD6491785_1","coding",66988937,67000931,30,null,"NA","mRNARGD6491785_1","Rat Genome Database","cytosolic phospholipase A2-like","chr13",100,100,{"$nulls":24},"Coding",10.95,10.58,11.17,7.02,7.21,7.27]
["TC1600000621.rn.1",13.27,11.08,4.563,"up",1.24370327946743e-5,0.000285394579493114,"Asah1","N-acylsphingosine amidohydrolase (acid ceramidase) 1","chr16","+","NM_053407","coding",53998405,54030021,239,"16q12.1",84431,"NM_053407","RefSeq","Rattus norvegicus N-acylsphingosine amidohydrolase (acid ceramidase) 1 (Asah1), mRNA.","chr16",100,100,"NM_053407","Q6P7S1","NM_053407","Rn.127798","brain| colon| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pineal gland| pituitary gland| placenta| prostate| small intestine| thymus| fetus| juvenile| adult","NM_053407","GO:0006629","lipid metabolic process","inferred from electronic annotation","NM_053407","GO:0005764","lysosome","inferred from electronic annotation","NM_053407","GO:0017040","ceramidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000013463","Pfam","IPR003199","Choloylglycine hydrolase/Peptidase C59 family","Coding",13.56,13.03,13.23,10.98,11.21,11.04]
["TC0400003384.rn.1",8.04,9.45,-2.657,"down",1.27486980758623e-5,0.000288530513774215,"Magi1","membrane associated guanylate kinase, WW and PDZ domain containing 1","chr4","-","NM_001030045","coding",125687385,126299489,338,"4q34",500261,"NM_001030045","RefSeq","Rattus norvegicus membrane associated guanylate kinase, WW and PDZ domain containing 1 (Magi1), mRNA.","chr4",100,100,"NM_001030045","Q4L1J4","NM_001030045","Rn.95239","brain| dorsal root ganglion| heart| lung| ovary| pituitary gland| prostate| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_001030045","GO:0070997","neuron death","not recorded","NM_001030045","GO:0005634","nucleus","not recorded","NM_001030045","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000037848","Pfam","IPR001202","WW domain","Coding",8.02,8.06,8.05,9.46,9.43,9.47]
["TC0500001898.rn.1",6.12,8.33,-4.627,"down",1.38477064112928e-5,0.000302330335649553,"Nppa","natriuretic peptide A","chr5","+","NM_012612","coding",164808280,164809734,40,"5q36",24602,"NM_012612","RefSeq","Rattus norvegicus natriuretic peptide A (Nppa), mRNA.","chr5",100,100,"NM_012612","P01161","NM_012612","Rn.2004","brain| dorsal root ganglion| embryonic tissue| heart| lung|tailbud embryo| metamorphosing embryo| adult","NM_012612","GO:0001666","response to hypoxia","inferred from expression pattern","NM_012612","GO:0005615","extracellular space","inferred from electronic annotation","NM_012612","GO:0005102","receptor binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000011005","Pfam","IPR000663","Natriuretic peptide","Coding",6.33,5.99,6.03,8.28,8.51,8.2]
["TC0300000309.rn.1",6.45,7.4,-1.932,"down",1.38538338136575e-5,0.000302330335649553,"Dab2ip","DAB2 interacting protein","chr3","+","NM_138710","coding",14889263,15060286,320,"3p11",192126,"NM_138710","RefSeq","Rattus norvegicus DAB2 interacting protein (Dab2ip), mRNA.","chr3",100,100,"NM_138710","Q6P730","NM_138710","Rn.14323","brain| connective tissue| dorsal root ganglion| eye| heart| lung| pancreas| pineal gland| pituitary gland| placenta| prostate| testis|tailbud embryo| adult",{"$nulls":4},"NM_138710","GO:0005622","intracellular","not recorded","NM_138710","GO:0005096","GTPase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000059993","Pfam","IPR000008","C2 domain","Coding",6.22,6.58,6.54,7.38,7.41,7.41]
["TC1300001598.rn.1",11.27,7.23,16.45,"up",1.46906537625481e-5,0.000308954220080616,"Pla2g4a","phospholipase A2, group IVA (cytosolic, calcium-dependent)","chr13","-","NM_133551","coding",67062252,67206688,220,"13q21",24653,"NM_133551","RefSeq","Rattus norvegicus phospholipase A2, group IVA (cytosolic, calcium-dependent) (Pla2g4a), mRNA.","chr13",100,100,"NM_133551","P50393","NM_133551","Rn.10162","brain| colon| kidney| lung| prostate| fetus| juvenile| adult","NM_133551","GO:0001542","ovulation from ovarian follicle","inferred from mutant phenotype","NM_133551","GO:0005634","nucleus","inferred from direct assay","NM_133551","GO:0004622","lysophospholipase activity","inferred from electronic annotation","NM_133551","GenMAPP","Prostaglandin_synthesis_regulation","ENSRNOT00000003630","Pfam","IPR000008","C2 domain","Coding",11.2,11,11.62,7.15,7.35,7.18]
["TC1300000811.rn.1",6.84,4.96,3.681,"up",1.51495990978687e-5,0.000312735904944882,"Aim2","absent in melanoma 2","chr13","+","ENSRNOT00000037655","coding",91921274,91963082,170,"13q24",304987,"ENSRNOT00000037655","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:96469430:96477880:1 gene:ENSRNOG00000003480 gene_biotype:protein_coding transcript_biotype:protein_coding","chr13",100,100,"ENSRNOT00000037655","D4A9W0",{"$nulls":3},"ENSRNOT00000037655","GO:0002218","activation of innate immune response","inferred from electronic annotation","ENSRNOT00000037655","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000037655","GO:0003690","double-stranded DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000037655","Pfam","IPR004020","DAPIN domain","Coding",6.68,6.79,7.04,5.1,4.93,4.86]
["TC0X00002479.rn.1",6.37,7.29,-1.892,"down",1.66427988947732e-5,0.000330402353829835,"Hs6st2","heparan sulfate 6-O-sulfotransferase 2","chrX","-","NM_001191726","coding",138675326,138972769,124,"Xq36",302489,"NM_001191726","RefSeq","Rattus norvegicus heparan sulfate 6-O-sulfotransferase 2 (Hs6st2), mRNA.","chrX",100,100,"NM_001191726","D3ZEK5","NM_001191726","Rn.230510","brain| adult","NM_001191726","GO:0008152","metabolic process","inferred from electronic annotation","NM_001191726","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001191726","GO:0008146","sulfotransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000040165","Pfam","IPR005331","Sulfotransferase","Coding",6.34,6.31,6.47,7.33,7.43,7.1]
["TC0600002188.rn.1",5.37,8.75,-10.411,"down",1.76541976072913e-5,0.000343917514129077,"Kcnf1","potassium voltage-gated channel, subfamily F, member 1","chr6","-","NM_001169104","coding",42471060,42473738,50,"6q16",298908,"NM_001169104","RefSeq","Rattus norvegicus potassium voltage-gated channel, subfamily F, member 1 (Kcnf1), mRNA.","chr6",100,100,"NM_001169104","D4ADX7","NM_001169104","Rn.91148","brain| prostate| adult","NM_001169104","GO:0034765","regulation of ion transmembrane transport","inferred from electronic annotation","NM_001169104","GO:0008076","voltage-gated potassium channel complex","inferred from electronic annotation","NM_001169104","GO:0005251","delayed rectifier potassium channel activity","not recorded",{"$nulls":3},"ENSRNOT00000033327","Pfam","IPR003131","Potassium channel tetramerisation-type BTB domain","Coding",5.41,5.03,5.68,8.7,9.02,8.54]
["TC0600001735.rn.1",10.75,8.15,6.063,"up",1.86590677606519e-5,0.000352311593554657,"Prkd3","protein kinase D3","chr6","-","NM_001024263","coding",1546019,1622259,309,"6q11",313834,"NM_001024263","RefSeq","Rattus norvegicus protein kinase D3 (Prkd3), mRNA.","chr6",100,100,"NM_001024263","D4A229","NM_001024263","Rn.3990","embryonic tissue| heart| kidney| liver| lung| muscle| ovary| pineal gland| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001024263","GO:0006468","protein phosphorylation","inferred from electronic annotation","NM_001024263","GO:0005634","nucleus","inferred from electronic annotation","NM_001024263","GO:0004697","protein kinase C activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007492","Pfam","IPR000719","Protein kinase domain","Coding",10.67,10.75,10.84,8.16,8.21,8.09]
["TC1400000531.rn.1",13.03,11.66,2.585,"up",2.03064905954078e-5,0.00037170078833807,null,null,"chr14","+",null,"coding",44606656,44610625,20,null,"NA","ENSRNOT00000002159","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:44423928:44424653:1 gene:ENSRNOG00000001591 gene_biotype:protein_coding transcript_biotype:protein_coding","chr14",100,100,"ENSRNOT00000002159","D4ACC7",{"$nulls":3},"ENSRNOT00000002159","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000002159","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000002159","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002159","Pfam","IPR001515","Ribosomal protein L32e","Coding",13.33,12.89,12.87,11.72,11.68,11.58]
["TC0900001949.rn.1",12.68,10.52,4.469,"up",2.16733697838412e-5,0.000386935361269379,"LOC102549727","thymosin beta-10-like","chr9","-","mRNARGD7554890_1","coding",54891820,54892077,30,null,"NA","mRNARGD7554890_1","Rat Genome Database","thymosin beta-10-like","chr9",100,100,{"$nulls":24},"Coding",12.97,12.58,12.48,10.77,10.55,10.23]
["TC0100002656.rn.1",5.92,6.57,-1.569,"down",2.2784078514179e-5,0.000397771083286235,"Fbxl19","F-box and leucine-rich repeat protein 19","chr1","+","NM_001107552","coding",199195795,199217147,169,"1q36",308999,"NM_001107552","RefSeq","Rattus norvegicus F-box and leucine-rich repeat protein 19 (Fbxl19), mRNA.","chr1",100,100,"NM_001107552","D4A2L9","NM_001107552","Rn.50190","brain| connective tissue| embryonic tissue| placenta| prostate| spleen| metamorphosing embryo| adult","NM_001107552","GO:0043161","proteasome-mediated ubiquitin-dependent protein catabolic process","inferred from electronic annotation","NM_001107552","GO:0019005","SCF ubiquitin ligase complex","inferred from electronic annotation","NM_001107552","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065187","Pfam","IPR001810","F-box domain","Coding",5.97,5.88,5.9,6.59,6.54,6.58]
["TC0100003266.rn.1",8.8,5.87,7.621,"up",2.44240271387973e-5,0.000414716030963998,"Lpxn","leupaxin","chr1","+","NM_001009649","coding",229639634,229674129,160,"1q43",293783,"NM_001009649","RefSeq","Rattus norvegicus leupaxin (Lpxn), mRNA.","chr1",100,100,"NM_001009649","Q5M852","NM_001009649","Rn.29200","brain| colon| dorsal root ganglion| kidney| liver| lung| pancreas| placenta| spleen| testis| thymus| metamorphosing embryo| juvenile| adult","NM_001009649","GO:0007162","negative regulation of cell adhesion","inferred from electronic annotation","NM_001009649","GO:0002102","podosome","inferred from electronic annotation","NM_001009649","GO:0003712","transcription cofactor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017109","Pfam","IPR001781","Zinc finger, LIM-type","Coding",8.75,8.6,9.04,5.89,6.06,5.65]
["TC0700000072.rn.1",13.37,12.14,2.346,"up",2.5809132532761e-5,0.000426981372596754,null,null,"chr7","+",null,"coding",4951747,4952584,30,null,"NA","ENSRNOT00000061482","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:4947938:4948775:1 gene:ENSRNOG00000039997 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000061482","D3ZP59",{"$nulls":11},"ENSRNOT00000061482","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":7},"Coding",13.44,13.42,13.24,12.09,12.16,12.17]
["TC1700001547.rn.1",6.59,7.36,-1.705,"down",2.74005189811437e-5,0.000443592185667705,"Tmem170b","transmembrane protein 170B","chr17","-","NM_001008774","coding",22832466,22864320,60,"17p12",361230,"NM_001008774","RefSeq","Rattus norvegicus transmembrane protein 170B (Tmem170b), mRNA.","chr17",100,100,"NM_001008774","Q7TQ79","NM_001008774","Rn.62730","placenta| adult",{"$nulls":4},"NM_001008774","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000046157","Pfam","IPR019334","Transmembrane protein 170","Coding",6.64,6.56,6.58,7.22,7.49,7.36]
["TC2000000432.rn.1",9.13,6.04,8.515,"up",2.94169971306989e-5,0.000463284367323092,"Col6a1","collagen, type VI, alpha 1","chr20","+","ENSRNOT00000001679","coding",12657913,12676395,384,"20p12",294337,"ENSRNOT00000001679","ENSEMBL","ensembl:known chromosome:Rnor_5.0:20:14817563:14835866:1 gene:ENSRNOG00000001249 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000001679","D3ZUL3","ENSRNOT00000001679","Rn.232118","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000001679","GO:0001649","osteoblast differentiation","not recorded","ENSRNOT00000001679","GO:0005576","extracellular region","not recorded","ENSRNOT00000001679","GO:0048407","platelet-derived growth factor binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000001679","Pfam","IPR002035","von Willebrand factor, type A","Coding",9.07,9.13,9.2,5.86,5.83,6.44]
["TC0900001567.rn.1",10.3,9.13,2.25,"up",3.08059418669339e-5,0.000473462953952876,"LOC100910336","ribosomal protein S19","chr9","-","ENSRNOT00000073160","coding",16802280,16807982,80,"1q21",29287,"ENSRNOT00000073160","ENSEMBL","ensembl:known chromosome:Rnor_5.0:9:15706484:15712182:-1 gene:ENSRNOG00000048199 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000073160","P17074","ENSRNOT00000073160","Rn.115882","adrenal gland| connective tissue| dorsal root ganglion| eye| heart| liver| ovary| pituitary gland| prostate| vibrissa| juvenile| adult","ENSRNOT00000073160","GO:0000028","ribosomal small subunit assembly","not recorded","ENSRNOT00000073160","GO:0005730","nucleolus","inferred from direct assay","ENSRNOT00000073160","GO:0003735","structural constituent of ribosome","inferred from direct assay","ENSRNOT00000073160","GenMAPP","Ribosomal_Proteins","ENSRNOT00000073160","Pfam","IPR001266","Ribosomal protein S19e","Coding",10.27,10.26,10.36,9.18,9.01,9.21]
["TC0200002883.rn.1",8.54,5.89,6.277,"up",3.19332861088064e-5,0.000483620848296492,"Map3k1","mitogen activated protein kinase kinase kinase 1","chr2","-","NM_053887","coding",43327318,43394317,325,"2q14",116667,"NM_053887","RefSeq","Rattus norvegicus mitogen activated protein kinase kinase kinase 1 (Map3k1), mRNA.","chr2",100,100,"NM_053887","Q62925","NM_053887","Rn.11081","adrenal gland| brain| colon| eye| kidney| liver| lung| muscle| pancreas| prostate| spleen| fetus| adult","NM_053887","GO:0000165","MAPK cascade","inferred from direct assay","NM_053887","GO:0005622","intracellular","not recorded","NM_053887","GO:0004672","protein kinase activity","not recorded","NM_053887","GenMAPP","Apoptosis","ENSRNOT00000017968","Pfam","IPR000719","Protein kinase domain","Coding",8.58,8.31,8.72,5.88,6.05,5.74]
["TC0600002128.rn.1",6.02,7.92,-3.732,"down",3.37649646155956e-5,0.000499600681718493,"Kcns3","potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3","chr6","-","NM_031778","coding",36764040,36819815,40,"6q14",83588,"NM_031778","RefSeq","Rattus norvegicus potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 (Kcns3), mRNA.","chr6",100,100,"NM_031778","O88759","NM_031778","Rn.10878","dorsal root ganglion| heart| lung| juvenile","NM_031778","GO:0034765","regulation of ion transmembrane transport","inferred from electronic annotation","NM_031778","GO:0005737","cytoplasm","not recorded","NM_031778","GO:0005251","delayed rectifier potassium channel activity","not recorded",{"$nulls":3},"ENSRNOT00000006499","Pfam","IPR003131","Potassium channel tetramerisation-type BTB domain","Coding",6.14,5.87,6.05,7.88,8.29,7.58]
["TC0X00000147.rn.1",9.19,4.46,26.538,"up",3.41021721865494e-5,0.000503732000895025,"Plp2","proteolipid protein 2 (colonic epithelium-enriched)","chrX","+","NM_207601","coding",15679100,15682663,97,"Xq13",302562,"NM_207601","RefSeq","Rattus norvegicus proteolipid protein 2 (colonic epithelium-enriched) (Plp2), mRNA.","chrX",100,100,"NM_207601","Q6P742","NM_207601","Rn.96974","adrenal gland| colon| connective tissue| eye| heart| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| vibrissa| fetus| juvenile| adult",{"$nulls":4},"NM_207601","GO:0005886","plasma membrane","inferred from electronic annotation","NM_207601","GO:0019956","chemokine binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000045256","Pfam","IPR008253","Marvel domain","Coding",9.55,8.87,9.15,4.78,4.54,4.07]
["TC1000001254.rn.1",13.4,13.98,-1.495,"down",3.66150533260601e-5,0.000525732304353335,"Ap2b1","adaptor-related protein complex 2, beta 1 subunit","chr10","+","NM_080583","coding",70516414,70621981,349,"10q26",140670,"NM_080583","RefSeq","Rattus norvegicus adaptor-related protein complex 2, beta 1 subunit (Ap2b1), mRNA.","chr10",100,100,"NM_080583","P62944","NM_080583","Rn.56138","adipose tissue| adrenal gland| brain| colon| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_080583","GO:0006886","intracellular protein transport","inferred from electronic annotation","NM_080583","GO:0005802","trans-Golgi network","inferred from direct assay","NM_080583","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000013363","Pfam","IPR000357","HEAT","Coding",13.41,13.34,13.45,13.97,14.08,13.9]
["TC1400001508.rn.1",8.79,5.03,13.548,"up",3.73421638417665e-5,0.000533446322446814,"Pf4","platelet factor 4","chr14","-","NM_001007729","coding",18848418,18849317,50,"14p22",360918,"NM_001007729","RefSeq","Rattus norvegicus platelet factor 4 (Pf4), mRNA.","chr14",100,100,"NM_001007729","P06765","NM_001007729","Rn.6800","kidney| liver| lung| placenta| spleen| adult","NM_001007729","GO:0006461","protein complex assembly","inferred from physical interaction","NM_001007729","GO:0005615","extracellular space","inferred from electronic annotation","NM_001007729","GO:0008009","chemokine activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000033406","Pfam","IPR001811","Chemokine interleukin-8-like domain","Coding",9.73,8.11,8.54,5.4,5.25,4.43]
["TC0200004481.rn.1",11.21,10.3,1.879,"up",3.92213519824212e-5,0.000549446859102128,"Stxbp3","syntaxin binding protein 3","chr2","-","NM_053637","coding",211595659,211638763,240,"2q34",114095,"NM_053637","RefSeq","Rattus norvegicus syntaxin binding protein 3 (Stxbp3), mRNA.","chr2",100,100,"NM_053637","Q99PV2","NM_053637","Rn.211988","brain| colon| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| testis| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_053637","GO:0006887","exocytosis","not recorded","NM_053637","GO:0005623","cell","not recorded","NM_053637","GO:0017075","syntaxin-1 binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000027666","Pfam","IPR001619","Sec1-like protein","Coding",11.25,11.1,11.27,10.21,10.5,10.18]
["TC1600001875.rn.1",10.66,8.96,3.249,"up",4.15990241127626e-5,0.000565584509098582,"Fgfr1","Fibroblast growth factor receptor 1","chr16","-","NM_024146","coding",71265390,71323964,330,"16q12.4",79114,"NM_024146","RefSeq","Rattus norvegicus Fibroblast growth factor receptor 1 (Fgfr1), mRNA.","chr16",100,100,"NM_024146","Q04589","NM_024146","Rn.9797","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| vibrissa| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_024146","GO:0005634","nucleus","inferred from electronic annotation","NM_024146","GO:0001948","glycoprotein binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000029284","Pfam","IPR000719","Protein kinase domain","Coding",10.64,10.74,10.61,9.01,9.05,8.82]
["TC1600002008.rn.1",10.74,10.24,1.414,"up",4.24124329509243e-5,0.000572897646026832,"Gas6","growth arrest specific 6","chr16","-","NM_057100","coding",81213364,81243940,201,"16q12.5",58935,"NM_057100","RefSeq","Rattus norvegicus growth arrest specific 6 (Gas6), mRNA.","chr16",100,100,"NM_057100","Q63772","NM_057100","Rn.52228","brain| connective tissue| heart| kidney| liver| lung| ovary| pineal gland| pituitary gland| spleen| thymus| fetus| juvenile| adult",{"$nulls":4},"NM_057100","GO:0005615","extracellular space","inferred from direct assay","NM_057100","GO:0001786","phosphatidylserine binding","not recorded",{"$nulls":3},"ENSRNOT00000024677","Pfam","IPR000294","Gamma-carboxyglutamic acid-rich (GLA) domain","Coding",10.77,10.72,10.72,10.19,10.27,10.25]
["TC1000000737.rn.1",5.68,6.36,-1.602,"down",4.50216286950715e-5,0.000591134325065825,"Nt5m","5,3-nucleotidase, mitochondrial","chr10","+","NM_001105785","coding",46205780,46244476,148,"10q22",287368,"NM_001105785","RefSeq","Rattus norvegicus 5,3-nucleotidase, mitochondrial (Nt5m), mRNA.","chr10",100,100,"NM_001105785","B2RZ81","NM_001105785","Rn.2189","heart| ovary| pituitary gland| placenta| prostate| fetus| juvenile| adult","NM_001105785","GO:0016311","dephosphorylation","inferred from electronic annotation","NM_001105785","GO:0005739","mitochondrion","not recorded","NM_001105785","GO:0008253","5'-nucleotidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000004448","Pfam","IPR010708","5'(3')-deoxyribonucleotidase","Coding",5.76,5.57,5.7,6.24,6.4,6.44]
["TC0200002317.rn.1",9.18,5.55,12.381,"up",4.59818230619066e-5,0.000597866952401482,"LOC685067","similar to guanylate binding protein family, member 6","chr2","+","ENSRNOT00000037181","coding",248215466,248241272,160,"2q44",685067,"ENSRNOT00000037181","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:2:266748515:266769711:1 gene:ENSRNOG00000029191 gene_biotype:protein_coding transcript_biotype:protein_coding","chr2",100,100,"ENSRNOT00000037181","D3ZV82","ENSRNOT00000037181","Rn.15220","brain| kidney| liver| pancreas| fetus| adult","ENSRNOT00000037181","GO:0006184","GTP catabolic process","inferred from electronic annotation","ENSRNOT00000037181","GO:0020005","symbiont-containing vacuole membrane","inferred from electronic annotation","ENSRNOT00000037181","GO:0003924","GTPase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000037181","Pfam","IPR003191","Guanylate-binding protein, C-terminal","Coding",8.81,8.79,9.94,5.4,5.94,5.32]
["TC0100007603.rn.1",7.16,8.3,-2.204,"down",4.79837989021139e-5,0.000614487596110204,"Pank1","pantothenate kinase 1","chr1","-","NM_001106373","coding",253119098,253189633,150,"1q52",294088,"NM_001106373","RefSeq","Rattus norvegicus pantothenate kinase 1 (Pank1), mRNA.","chr1",100,100,"NM_001106373","D3ZWD3","NM_001106373","Rn.6581","brain| colon| kidney| liver| ovary| pineal gland| placenta| prostate| fetus| juvenile| adult","NM_001106373","GO:0015937","coenzyme A biosynthetic process","inferred from electronic annotation","NM_001106373","GO:0005634","nucleus","inferred from electronic annotation","NM_001106373","GO:0004594","pantothenate kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000067822","Pfam","IPR004567","Type II pantothenate kinase","Coding",7.04,7.25,7.19,8.29,8.24,8.37]
["TC0100003247.rn.1",15.69,7.93,216.767,"up",5.01259197069169e-5,0.000627547982366082,"Mpeg1","macrophage expressed 1","chr1","+","NM_022617","coding",228724568,228729054,80,"1q43",64552,"NM_022617","RefSeq","Rattus norvegicus macrophage expressed 1 (Mpeg1), mRNA.","chr1",100,100,"NM_022617","Q9WV57","NM_022617","Rn.162497","adipose tissue| liver| adult",{"$nulls":4},"NM_022617","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000028622","Pfam","IPR020864","Membrane attack complex component/perforin (MACPF) domain","Coding",15.76,15.4,15.9,5.44,9.22,9.13]
["TC0900000425.rn.1",7.91,5.27,6.233,"up",5.1073747424241e-5,0.000633263430768373,"LOC102551518","uncharacterized LOC102551518","chr9","+","mRNARGD7638138_1","coding",37782353,37787259,60,null,"NA","mRNARGD7638138_1","Rat Genome Database","uncharacterized LOC102551518","chr9",100,100,{"$nulls":24},"Coding",7.89,7.61,8.24,4.98,5.63,5.2]
["TSUnmapped00000048.rn.1",7.86,4.65,9.254,"up",5.32228217205248e-5,0.000651998332938813,"RT1-A","MHC class I RT1.Aa alpha-chain",null,null,"NM_001134701","coding","NA","NA",30,null,100188935,"NM_001134701","RefSeq","Rattus norvegicus MHC class I RT1.Aa alpha-chain (Rt1.aa), mRNA.",null,100,100,"NM_001134701","B2RYE7","NM_001134701","Rn.203332","colon| dorsal root ganglion| eye| heart| muscle| pancreas| placenta| prostate| spleen| thymus| fetus| juvenile| adult","NM_001134701","GO:0001916","positive regulation of T cell mediated cytotoxicity","inferred from electronic annotation","NM_001134701","GO:0005886","plasma membrane","not recorded","NM_001134701","GO:0005102","receptor binding","not recorded",{"$nulls":7},"Coding",7.54,7.26,8.77,4.58,4.72,4.66]
["TC0800000239.rn.1",5.89,6.96,-2.099,"down",5.39511129207132e-5,0.000657212329975953,"Ldlr","low density lipoprotein receptor","chr8","+","NM_175762","coding",22750340,22775017,240,"8q13",300438,"NM_175762","RefSeq","Rattus norvegicus low density lipoprotein receptor (Ldlr), mRNA.","chr8",100,100,"NM_175762","P35952","NM_175762","Rn.10483","brain| colon| dorsal root ganglion| eye| heart| liver| pancreas| prostate| spleen| fetus| juvenile| adult","NM_175762","GO:0001666","response to hypoxia","inferred from expression pattern","NM_175762","GO:0005764","lysosome","inferred from electronic annotation","NM_175762","GO:0001948","glycoprotein binding","inferred from electronic annotation","NM_175762","GenMAPP","Wnt_Signaling","ENSRNOT00000013496","Pfam","IPR000033","LDLR class B repeat","Coding",6.04,5.99,5.64,7.07,7,6.8]
["TC0900001880.rn.1",8.84,7.74,2.144,"up",5.7282172703743e-5,0.00068014259879475,"Rnf149","ring finger protein 149","chr9","-","ENSRNOT00000018684","coding",46282127,46309872,160,"9q21",363222,"ENSRNOT00000018684","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:45974158:45998057:-1 gene:ENSRNOG00000013946 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000018684","D3ZI66","ENSRNOT00000018684","Rn.231919","adipose tissue| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pancreas| placenta| prostate| spleen| testis| juvenile| adult","ENSRNOT00000018684","GO:0016567","protein ubiquitination","not recorded","ENSRNOT00000018684","GO:0070062","extracellular vesicular exosome","not recorded","ENSRNOT00000018684","GO:0004842","ubiquitin-protein transferase activity","not recorded",{"$nulls":3},"ENSRNOT00000018684","Pfam","IPR003137","Protease-associated domain, PA","Coding",8.88,8.78,8.85,7.71,7.79,7.73]
["TC0500001856.rn.1",7.53,6.4,2.189,"up",5.75094585559367e-5,0.000680317498244499,"Rps20","similar to 40S ribosomal protein S20","chr5","+","ENSRNOT00000040481","coding",161889054,161889748,30,"5q22",500451,"ENSRNOT00000040481","ENSEMBL","ensembl:known chromosome:Rnor_5.0:5:165588420:165588924:1 gene:ENSRNOG00000030596 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000040481","P60868","ENSRNOT00000040481","Rn.103133","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| vibrissa| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000040481","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000040481","GO:0022627","cytosolic small ribosomal subunit","inferred from direct assay","ENSRNOT00000040481","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000040481","Pfam","IPR027486","Ribosomal protein S10 domain","Coding",7.55,7.42,7.62,6.59,6.54,6.08]
["TC0700003577.rn.1",7.13,4.74,5.242,"up",6.04156136866043e-5,0.000694538744359691,"Cyp2d1","cytochrome P450, family 2, subfamily d, polypeptide 1","chr7","-","NM_153313","coding",123625636,123630122,121,"7q34",266684,"NM_153313","RefSeq","Rattus norvegicus cytochrome P450, family 2, subfamily d, polypeptide 1 (Cyp2d1), mRNA.","chr7",100,100,"NM_153313","P10633","NM_153313","Rn.91133","colon| kidney| liver| juvenile| adult","NM_153313","GO:0010033","response to organic substance","inferred from expression pattern","NM_153313","GO:0005737","cytoplasm","inferred from direct assay","NM_153313","GO:0004497","monooxygenase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000050002","Pfam","IPR001128","Cytochrome P450","Coding",7.12,6.92,7.35,4.66,4.75,4.81]
["TC0X00000134.rn.1",7.51,8.38,-1.828,"down",6.05128941027496e-5,0.000694538744359691,"Hdac6","histone deacetylase 6","chrX","+","ENSRNOT00000009295","coding",15294788,15316673,336,"Xq13",84581,"ENSRNOT00000009295","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:16076323:16096574:1 gene:ENSRNOG00000048738 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000009295","D3ZVD8","ENSRNOT00000009295","Rn.13453","brain| connective tissue| eye| kidney| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| thymus| metamorphosing embryo| juvenile| adult","ENSRNOT00000009295","GO:0000209","protein polyubiquitination","not recorded","ENSRNOT00000009295","GO:0000118","histone deacetylase complex","not recorded","ENSRNOT00000009295","GO:0004407","histone deacetylase activity","not recorded","ENSRNOT00000009295","GenMAPP","Cell_cycle_KEGG","ENSRNOT00000009295","Pfam","IPR001607","Zinc finger, UBP-type","Coding",7.48,7.39,7.65,8.38,8.48,8.29]
["TC0100007443.rn.1",7.07,8.66,-3.01,"down",6.39577499565847e-5,0.000718635235767033,"Pip5k1b","phosphatidylinositol-4-phosphate 5-kinase, type I, beta","chr1","-","NM_001012743","coding",242168462,242444158,220,"1q51",309419,"NM_001012743","RefSeq","Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase, type I, beta (Pip5k1b), mRNA.","chr1",100,100,"NM_001012743","Q5CZZ9","NM_001012743","Rn.203303","brain| dorsal root ganglion| eye| kidney| liver| lung| pancreas| placenta| small intestine| metamorphosing embryo| juvenile| adult","NM_001012743","GO:0046488","phosphatidylinositol metabolic process","not recorded","NM_001012743","GO:0001931","uropod","inferred from electronic annotation","NM_001012743","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000068645","Pfam","IPR002498","Phosphatidylinositol-4-phosphate 5-kinase, core","Coding",7.12,6.96,7.12,8.4,8.91,8.68]
["TC0100008153.rn.1",4.73,7.93,-9.19,"down",6.7259009248145e-5,0.000745125159215259,"swarflu","Unannotated AceView Transcript","chr1","-","swarflu.aSep08","coding",222179445,222182128,53,null,"NA","swarflu.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"Coding",5.1,4.46,4.62,7.57,7.76,8.47]
["TC0100001692.rn.1",11.84,9.15,6.453,"up",6.93672221158931e-5,0.000756728731570624,"Chsy1","chondroitin sulfate synthase 1","chr1","+","NM_001106268","coding",127010614,127071570,30,"1q22",292999,"NM_001106268","RefSeq","Rattus norvegicus chondroitin sulfate synthase 1 (Chsy1), mRNA.","chr1",100,100,"NM_001106268","D3ZRM3","NM_001106268","Rn.13788","brain| connective tissue| embryonic tissue| eye| lung| ovary| prostate| spleen| thymus| metamorphosing embryo| juvenile| adult","NM_001106268","GO:0030206","chondroitin sulfate biosynthetic process","inferred from electronic annotation","NM_001106268","GO:0005576","extracellular region","inferred from electronic annotation","NM_001106268","GO:0047238","glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016939","Pfam","IPR003378","Fringe-like","Coding",11.8,11.79,11.92,8.88,9.17,9.4]
["TC0600002602.rn.1",7.06,8.55,-2.809,"down",7.22631106542847e-5,0.000772574874191571,"Vcpkmt","methyltransferase like 21D","chr6","-","ENSRNOT00000033412","coding",91878452,91884336,112,null,"NA","ENSRNOT00000033412","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:6:101330637:101336068:-1 gene:ENSRNOG00000027693 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000033412","F1M0A1","ENSRNOT00000033412","Rn.154714","connective tissue| eye| heart| pituitary gland| prostate|tailbud embryo| adult","ENSRNOT00000033412","GO:0018023","peptidyl-lysine trimethylation","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000033412","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000033412","Pfam","IPR019410","Nicotinamide N-methyltransferase-like","Coding",7.21,6.69,7.29,8.46,8.65,8.55]
["TC0X00001297.rn.1",9.76,6.11,12.553,"up",7.60926774665872e-5,0.000800534430883927,"Flna","filamin A, alpha","chrX","+","NM_001134599","coding",156460673,156487682,698,null,293860,"NM_001134599","RefSeq","Rattus norvegicus filamin A, alpha (Flna), mRNA.","chrX",100,100,"NM_001134599","C0JPT7","NM_001134599","Rn.4213","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| placenta| prostate| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001134599","GO:0001837","epithelial to mesenchymal transition","inferred from electronic annotation","NM_001134599","GO:0005634","nucleus","inferred from direct assay","NM_001134599","GO:0001948","glycoprotein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000068489","Pfam","IPR001715","Calponin homology domain","Coding",9.78,9.71,9.8,6.1,6.03,6.21]
["TC0900000786.rn.1",14.21,13.36,1.803,"up",7.84521008028063e-5,0.000813606831668984,"LOC100360841","ribosomal protein L37","chr9","+","ENSRNOT00000045156","coding",69790828,69791195,30,"2q16",81770,"ENSRNOT00000045156","ENSEMBL","ensembl:known chromosome:Rnor_5.0:9:69600106:69600473:1 gene:ENSRNOG00000033803 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000045156","P61928","ENSRNOT00000045156","Rn.65053","adrenal gland| brain| connective tissue| eye| heart| kidney| lung| ovary| pancreas| prostate| spleen| thymus| juvenile| adult","ENSRNOT00000045156","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000045156","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000045156","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000045156","Pfam","IPR001569","Ribosomal protein L37e","Coding",14.22,14.22,14.19,13.57,13.4,13.11]
["TC0800003168.rn.1",11.95,10.5,2.732,"up",8.14509604985779e-5,0.00082894647386387,"Atp1b3","ATPase, Na+/K+ transporting, beta 3 polypeptide","chr8","-","NM_012913","coding",104181058,104221342,142,"8q31",25390,"NM_012913","RefSeq","Rattus norvegicus ATPase, Na+/K+ transporting, beta 3 polypeptide (Atp1b3), mRNA.","chr8",100,100,"NM_012913","Q63377","NM_012913","Rn.5041","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| nerve| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_012913","GO:0006813","potassium ion transport","inferred from direct assay","NM_012913","GO:0005737","cytoplasm","not recorded","NM_012913","GO:0005391","sodium:potassium-exchanging ATPase activity","inferred by curator","NM_012913","GenMAPP","Calcium_regulation_in_cardiac_cells","ENSRNOT00000015476","Pfam","IPR000402","Sodium/potassium-transporting ATPase subunit beta","Coding",11.91,11.8,12.13,10.45,10.53,10.53]
["TC0800001780.rn.1",7.23,8.03,-1.741,"down",8.3266152489399e-5,0.000836409208729405,"Trak1","trafficking protein, kinesin binding 1","chr8","+","NM_001134565","coding",129946490,130106382,420,"8q32",316085,"NM_001134565","RefSeq","Rattus norvegicus trafficking protein, kinesin binding 1 (Trak1), mRNA.","chr8",100,100,"NM_001134565","D4ACC5","NM_001134565","Rn.3090","brain| connective tissue| dorsal root ganglion| embryonic tissue| heart| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001134565","GO:0008152","metabolic process","inferred from electronic annotation","NM_001134565","GO:0005737","cytoplasm","not recorded","NM_001134565","GO:0016740","transferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000026106","Pfam","IPR006933","HAP1, N-terminal","Coding",7.16,7.21,7.33,7.97,8.03,8.08]
["TC0300000170.rn.1",7.16,7.88,-1.647,"down",8.48876203458205e-5,0.000845517690955991,"Tsc1","tuberous sclerosis 1","chr3","+","NM_021854","coding",7220042,7269068,384,"3p12",60445,"NM_021854","RefSeq","Rattus norvegicus tuberous sclerosis 1 (Tsc1), mRNA.","chr3",100,100,"NM_021854","Q9Z136","NM_021854","Rn.205837","brain| prostate| adult","NM_021854","GO:0001822","kidney development","inferred from electronic annotation","NM_021854","GO:0005737","cytoplasm","not recorded","NM_021854","GO:0030695","GTPase regulator activity","inferred from mutant phenotype",{"$nulls":3},"ENSRNOT00000016904","Pfam","IPR007483","Hamartin","Coding",7.16,7.06,7.27,7.86,7.95,7.84]
["TC0300000298.rn.1",8.15,6.42,3.317,"up",8.83732841601565e-5,0.00086583887148679,"Cntrl","centriolin","chr3","+","ENSRNOT00000007776","coding",14299455,14371681,542,"3p11",311886,"ENSRNOT00000007776","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:19623108:19689507:1 gene:ENSRNOG00000022015 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000007776","D4A619","ENSRNOT00000007776","Rn.226820",null,"ENSRNOT00000007776","GO:0000278","mitotic cell cycle","inferred from electronic annotation","ENSRNOT00000007776","GO:0005737","cytoplasm","not recorded","ENSRNOT00000007776","GO:0051082","unfolded protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007776","Pfam","IPR001611","Leucine-rich repeat","Coding",7.96,7.96,8.54,6.38,6.44,6.44]
["TC0300001518.rn.1",6.77,4.67,4.287,"up",9.10929733224792e-5,0.000881546540158655,"Nusap1","nucleolar and spindle associated protein 1","chr3","+","NM_001107762","coding",111421474,111452600,170,"3q35",311336,"NM_001107762","RefSeq","Rattus norvegicus nucleolar and spindle associated protein 1 (Nusap1), mRNA.","chr3",100,100,"NM_001107762","B1WBZ5","NM_001107762","Rn.106933","brain| connective tissue| heart| kidney| liver| lung| pancreas| prostate| small intestine| spleen|tailbud embryo| metamorphosing embryo| fetus| adult","NM_001107762","GO:0000070","mitotic sister chromatid segregation","not recorded","NM_001107762","GO:0005634","nucleus","not recorded","NM_001107762","GO:0008017","microtubule binding","inferred from electronic annotation",{"$nulls":7},"Coding",7,6.51,6.8,4.77,4.63,4.61]
["TC0300000982.rn.1",5.78,6.18,-1.32,"down",9.34163641593129e-5,0.00089653903967482,"Tnks1bp1","tankyrase 1 binding protein 1","chr3","+","ENSRNOT00000012209","coding",72458545,72483215,170,"3q24",295707,"ENSRNOT00000012209","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:78972444:78993394:1 gene:ENSRNOG00000009195 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000012209","D3ZF26",{"$nulls":7},"ENSRNOT00000012209","GO:0030014","CCR4-NOT complex","inferred from electronic annotation",{"$nulls":11},"Coding",5.78,5.74,5.83,6.15,6.18,6.2]
["TC0600003247.rn.1",12.11,11.41,1.625,"up",9.73684248958272e-5,0.000916341807229835,"Akt1","v-akt murine thymoma viral oncogene homolog 1","chr6","-","NM_033230","coding",137218387,137239970,183,"6q32",24185,"NM_033230","RefSeq","Rattus norvegicus v-akt murine thymoma viral oncogene homolog 1 (Akt1), mRNA.","chr6",100,100,"NM_033230","P47196","NM_033230","Rn.11422","adipose tissue| brain| colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| muscle| ovary| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_033230","GO:0005622","intracellular","not recorded","NM_033230","GO:0004672","protein kinase activity","inferred from direct assay","NM_033230","GenMAPP","Integrin-mediated_cell_adhesion_KEGG","ENSRNOT00000031164","Pfam","IPR000719","Protein kinase domain","Coding",12.01,12.02,12.3,11.41,11.49,11.32]
["TC1000001884.rn.1",5,6.69,-3.227,"down",9.96726446817016e-5,0.000927874335887373,"Sstr2","somatostatin receptor 2","chr10","+","NM_019348","coding",102136283,102143449,60,"10q32.1",54305,"NM_019348","RefSeq","Rattus norvegicus somatostatin receptor 2 (Sstr2), mRNA.","chr10",100,100,"NM_019348","P30680","NM_019348","Rn.9929","brain| dorsal root ganglion| adult","NM_019348","GO:0006937","regulation of muscle contraction","inferred from mutant phenotype","NM_019348","GO:0005737","cytoplasm","inferred from direct assay","NM_019348","GO:0004994","somatostatin receptor activity","inferred from direct assay","NM_019348","GenMAPP","GPCRDB_Class_A_Rhodopsin-like","ENSRNOT00000003734","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",5.04,4.88,5.07,6.49,7.01,6.56]
["TC0800001355.rn.1",9.2,6.31,7.413,"up",0.000101550632898113,0.000938392806038381,"Rbp1","retinol binding protein 1, cellular","chr8","+","NM_012733","coding",106449233,106470846,66,"8q31",25056,"NM_012733","RefSeq","Rattus norvegicus retinol binding protein 1, cellular (Rbp1), mRNA.","chr8",100,100,"NM_012733","P02696","NM_012733","Rn.902","brain| eye| kidney| liver| nerve| pancreas| prostate| fetus| adult","NM_012733","GO:0002138","retinoic acid biosynthetic process","inferred from expression pattern","NM_012733","GO:0005829","cytosol","inferred from direct assay","NM_012733","GO:0005215","transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018622","Pfam","IPR000566","Lipocalin/cytosolic fatty-acid binding domain","Coding",9.41,9.35,8.83,6.38,6.24,6.31]
["TC1800000520.rn.1",11.72,12.34,-1.537,"down",0.000102429723276485,0.000940934279765109,"Csnk1g3","casein kinase 1, gamma 3","chr18","+","NM_022855","coding",48831209,48913341,198,"18q11",64823,"NM_022855","RefSeq","Rattus norvegicus casein kinase 1, gamma 3 (Csnk1g3), mRNA.","chr18",100,100,"NM_022855","Q62763","NM_022855","Rn.10084","brain| connective tissue| dorsal root ganglion| eye| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| thymus|tailbud embryo| juvenile| adult","NM_022855","GO:0006468","protein phosphorylation","inferred from direct assay","NM_022855","GO:0005737","cytoplasm","inferred from electronic annotation","NM_022855","GO:0000287","magnesium ion binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000022792","Pfam","IPR000719","Protein kinase domain","Coding",11.66,11.8,11.69,12.21,12.35,12.45]
["TC1100000627.rn.1",12.09,10.4,3.227,"up",0.00010668847515196,0.000963246102840279,"RGD1563835","similar to ribosomal protein L27","chr11","+","ENSRNOT00000042756","coding",64472038,64472531,30,"11q21",498085,"ENSRNOT00000042756","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:11:67637783:67638227:-1 gene:ENSRNOG00000033603 gene_biotype:protein_coding transcript_biotype:protein_coding","chr11",100,100,"ENSRNOT00000042756","D3ZTK5",{"$nulls":3},"ENSRNOT00000042756","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000042756","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000042756","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000042756","Pfam","IPR001141","Ribosomal protein L27e","Coding",12.32,11.89,12.05,10.49,10.39,10.33]
["TC1700001628.rn.1",4.01,4.72,-1.636,"down",0.000110173994287737,0.000987020348000144,"Ppp1r3g","protein phosphatase 1, regulatory subunit 3G","chr17","-","ENSRNOT00000021704","coding",29566032,29570291,36,"17p12",291069,"ENSRNOT00000021704","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:31464150:31465193:-1 gene:ENSRNOG00000016222 gene_biotype:protein_coding transcript_biotype:protein_coding","chr17",100,100,"ENSRNOT00000021704","M0R4A0",{"$nulls":3},"ENSRNOT00000021704","GO:0042593","glucose homeostasis","inferred from electronic annotation","ENSRNOT00000021704","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000021704","GO:0019903","protein phosphatase binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000021704","Pfam","IPR005036","Putative phosphatase regulatory subunit","Coding",4.1,3.9,4.02,4.72,4.71,4.74]
["TC0100001798.rn.1",9.44,6.87,5.938,"up",0.000113687132505249,0.00100655411760891,"Akap13","A kinase (PRKA) anchor protein 13","chr1","+","NM_001106271","coding",137013098,137315451,650,"1q31",293024,"NM_001106271","RefSeq","Rattus norvegicus A kinase (PRKA) anchor protein 13 (Akap13), mRNA.","chr1",100,100,"NM_001106271","F1M3G7","NM_001106271","Rn.2027","adipose tissue| colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| placenta| prostate| small intestine| testis| metamorphosing embryo| adult","NM_001106271","GO:0006468","protein phosphorylation","inferred from electronic annotation","NM_001106271","GO:0005737","cytoplasm","not recorded","NM_001106271","GO:0004691","cAMP-dependent protein kinase activity","inferred from electronic annotation","NM_001106271","GenMAPP","G_Protein_Signaling","ENSRNOT00000014802","Pfam","IPR000219","Dbl homology (DH) domain","Coding",9.41,9.32,9.6,6.71,7.06,6.85]
["TC1000001203.rn.1",9.36,6.51,7.21,"up",0.000117795742292137,0.00102748770926551,"Adap2","ArfGAP with dual PH domains 2","chr10","+","NM_020101","coding",67494932,67528566,150,"10q26",56826,"NM_020101","RefSeq","Rattus norvegicus ArfGAP with dual PH domains 2 (Adap2), mRNA.","chr10",100,100,"NM_020101","Q9JK15","NM_020101","Rn.203877","kidney| placenta| adult","NM_020101","GO:0007507","heart development","inferred from electronic annotation","NM_020101","GO:0005737","cytoplasm","inferred from electronic annotation","NM_020101","GO:0005545","1-phosphatidylinositol binding","inferred from mutant phenotype",{"$nulls":7},"Coding",9.57,9.27,9.25,6.77,6.5,6.26]
["TC1900000902.rn.1",14.9,11.73,9,"up",0.000120772851602977,0.00104479342888213,"Itgb1","integrin, beta 1","chr19","+","NM_017022","coding",61677392,61725537,170,"19q12",24511,"NM_017022","RefSeq","Rattus norvegicus integrin, beta 1 (Itgb1), mRNA.","chr19",100,100,"NM_017022","P49134","NM_017022","Rn.25733","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_017022","GO:0000082","G1/S transition of mitotic cell cycle","inferred from electronic annotation","NM_017022","GO:0001669","acrosomal vesicle","inferred from direct assay","NM_017022","GO:0001948","glycoprotein binding","inferred from physical interaction","NM_017022","GenMAPP","Integrin-mediated_cell_adhesion_KEGG","ENSRNOT00000014785","Pfam","IPR002369","Integrin beta subunit, N-terminal","Coding",14.02,15.36,15.32,11.73,11.81,11.64]
["TC0700002491.rn.1",8.38,5.36,8.112,"up",0.000124349365784123,0.00106006602675299,"Elk3","ELK3, member of ETS oncogene family","chr7","-","NM_001108743","coding",34086196,34149601,144,"7q13",362871,"NM_001108743","RefSeq","Rattus norvegicus ELK3, member of ETS oncogene family (Elk3), mRNA.","chr7",100,100,"NM_001108743","D4A9V6","NM_001108743","Rn.196088","adipose tissue| brain| colon| connective tissue| embryonic tissue| eye| heart| lung| pancreas| pineal gland| placenta| prostate| spleen| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001108743","GO:0001525","angiogenesis","inferred from electronic annotation","NM_001108743","GO:0005634","nucleus","not recorded","NM_001108743","GO:0000978","RNA polymerase II core promoter proximal region sequence-specific DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000005911","Pfam","IPR000418","Ets domain","Coding",8.41,8.14,8.6,5.28,5.5,5.3]
["TC1200000422.rn.1",8.54,7.58,1.945,"up",0.000127957341145885,0.00107743430588714,"Hip1","huntingtin interacting protein 1","chr12","+","NM_001100475","coding",24180842,24315441,491,"12q12",192154,"NM_001100475","RefSeq","Rattus norvegicus huntingtin interacting protein 1 (Hip1), mRNA.","chr12",100,100,"NM_001100475","G3V8Y8","NM_001100475","Rn.836","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001100475","GO:0006897","endocytosis","not recorded","NM_001100475","GO:0005737","cytoplasm","not recorded","NM_001100475","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000030497","Pfam","IPR001026","Epsin domain, N-terminal","Coding",8.64,8.41,8.57,7.61,7.64,7.49]
["TC1600001356.rn.1",7.56,9.24,-3.204,"down",0.000130958101574668,0.00109158981883568,"Abhd8","abhydrolase domain containing 8","chr16","-","NM_001107301","coding",19866025,19881010,100,"16p14",306338,"NM_001107301","RefSeq","Rattus norvegicus abhydrolase domain containing 8 (Abhd8), mRNA.","chr16",100,100,"NM_001107301","B5DEN3","NM_001107301","Rn.22147","brain| colon| connective tissue| eye| heart| nerve| ovary| pituitary gland| prostate| testis| thymus|tailbud embryo| fetus| juvenile| adult","NM_001107301","GO:0008152","metabolic process","inferred from electronic annotation",{"$nulls":4},"NM_001107301","GO:0016787","hydrolase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000060","Pfam","IPR000073","Alpha/beta hydrolase fold-1","Coding",7.64,7.32,7.73,9.22,9.25,9.24]
["TC0300000188.rn.1",6.84,7.77,-1.905,"down",0.000134773578007168,0.00111091471807044,"Slc27a4","solute carrier family 27 (fatty acid transporter), member 4","chr3","+","NM_001100706","coding",8363937,8376971,140,"3p12",311839,"NM_001100706","RefSeq","Rattus norvegicus solute carrier family 27 (fatty acid transporter), member 4 (Slc27a4), mRNA.","chr3",100,100,"NM_001100706","G3V7V3","NM_001100706","Rn.145068","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| kidney| liver| pituitary gland| placenta| prostate| small intestine| spleen| testis| metamorphosing embryo| juvenile| adult","NM_001100706","GO:0000038","very long-chain fatty acid metabolic process","not recorded","NM_001100706","GO:0005783","endoplasmic reticulum","not recorded","NM_001100706","GO:0004467","long-chain fatty acid-CoA ligase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019500","Pfam","IPR000873","AMP-dependent synthetase/ligase","Coding",6.97,6.57,6.97,7.71,7.91,7.69]
["TC0300003911.rn.1",4.53,5.05,-1.434,"down",0.000140234323133715,0.00114205833434401,"Gjd2","gap junction protein, delta 2","chr3","-","NM_019281","coding",105466546,105472150,50,"3q35",50564,"NM_019281","RefSeq","Rattus norvegicus gap junction protein, delta 2 (Gjd2), mRNA.","chr3",100,100,"NM_019281","O70610","NM_019281","Rn.9904",null,"NM_019281","GO:0001508","action potential","inferred from electronic annotation","NM_019281","GO:0005921","gap junction","inferred from direct assay","ENSRNOT00000011078","GO:0005515","protein binding","inferred from electronic annotation","NM_019281","GenMAPP","Calcium_regulation_in_cardiac_cells","ENSRNOT00000011078","Pfam","IPR013092","Connexin, N-terminal","Coding",4.56,4.56,4.47,5.06,4.98,5.1]
["TC0200003762.rn.1",13.34,10.12,9.318,"up",0.000144979206452449,0.00117027592717727,"P2ry13","purinergic receptor P2Y, G-protein coupled, 13","chr2","-","NM_001002853","coding",149430855,149432105,30,"2q31",310444,"NM_001002853","RefSeq","Rattus norvegicus purinergic receptor P2Y, G-protein coupled, 13 (P2ry13), mRNA.","chr2",100,100,"NM_001002853","Q6GUG4","NM_001002853","Rn.209780",null,"NM_001002853","GO:0007194","negative regulation of adenylate cyclase activity","inferred from electronic annotation","NM_001002853","GO:0005783","endoplasmic reticulum","inferred from electronic annotation","NM_001002853","GO:0045028","G-protein coupled purinergic nucleotide receptor activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000051027","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",13.35,12.63,14.05,10.43,10.35,9.57]
["TC0700001351.rn.1",7.33,7.88,-1.464,"down",0.00015116131433586,0.00120065075049302,"Cyc1","cytochrome c-1","chr7","+","NM_001277194","coding",117409450,117411953,200,"7q34",300047,"NM_001277194","RefSeq","Rattus norvegicus cytochrome c-1 (Cyc1), mRNA.","chr7",100,100,"ENSRNOT00000017067","D3ZFQ8","NM_001277194","Rn.1413","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_001277194","GO:0033762","response to glucagon","inferred from direct assay","NM_001277194","GO:0005634","nucleus","not recorded","NM_001277194","GO:0005506","iron ion binding","inferred from electronic annotation",{"$nulls":7},"Coding",7.39,7.29,7.32,7.8,7.97,7.87]
["TC0800000050.rn.1",7.73,6.03,3.249,"up",0.000155751071371625,0.00122146810871174,"Tmem123","transmembrane protein 123","chr8","+","NM_001014205","coding",5967274,5997387,99,"8q11",363013,"NM_001014205","RefSeq","Rattus norvegicus transmembrane protein 123 (Tmem123), mRNA.","chr8",100,100,"NM_001014205","Q5HZB0","NM_001014205","Rn.12767","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| muscle| ovary| pancreas| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001014205","GO:0070267","oncosis","inferred from electronic annotation","NM_001014205","GO:0009897","external side of plasma membrane","inferred from electronic annotation","NM_001014205","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000014065","Pfam","IPR007947","CD164-related protein","Coding",7.8,7.59,7.79,5.82,6.2,6.06]
["TC1100000759.rn.1",5.97,4.65,2.497,"up",0.000158944998071007,0.00123260426852297,"Nrros","negative regulator of reactive oxygen species","chr11","+","NM_001024995","coding",71872746,71889897,80,"11q22",303875,"NM_001024995","RefSeq","Rattus norvegicus negative regulator of reactive oxygen species (Nrros), mRNA.","chr11",100,100,"NM_001024995","Q5BK65","NM_001024995","Rn.138732","brain| connective tissue| liver| lung| pancreas| pituitary gland| prostate| spleen| thymus| juvenile| adult","NM_001024995","GO:0006801","superoxide metabolic process","inferred from sequence or structural similarity","NM_001024995","GO:0005783","endoplasmic reticulum","inferred from sequence or structural similarity","ENSRNOT00000050364","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000050364","Pfam","IPR001611","Leucine-rich repeat","Coding",5.84,5.84,6.23,4.81,4.61,4.52]
["TC0200004656.rn.1",9.76,10.36,-1.516,"down",0.000164961900607676,0.00126626300285282,"LOC100361144","Unannotated AceView Transcript","chr2","-","NDUF_B12.0.aSep08-unspliced","coding",232033089,232033583,30,null,"NA","NDUF_B12.0.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr2",100,100,{"$nulls":24},"Coding",9.77,9.83,9.67,10.35,10.42,10.3]
["TC0100002899.rn.1",10.15,9.18,1.959,"up",0.000166460276665119,0.00127382443433911,"Rplp2","ribosomal protein, large P2","chr1","+","NM_001030021","coding",214427954,214430752,85,"1q41",140662,"NM_001030021","RefSeq","Rattus norvegicus ribosomal protein, large P2 (Rplp2), mRNA.","chr1",100,100,"NM_001030021","P02401","NM_001030021","Rn.976","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| nerve| pancreas| pituitary gland| placenta| prostate| vibrissa| adult","NM_001030021","GO:0006414","translational elongation","inferred from electronic annotation","NM_001030021","GO:0005840","ribosome","inferred from electronic annotation","NM_001030021","GO:0003735","structural constituent of ribosome","inferred from electronic annotation","NM_001030021","GenMAPP","Ribosomal_Proteins","ENSRNOT00000057030","Pfam","IPR001813","Ribosomal protein L10/L12","Coding",10.23,10.11,10.11,9.26,9.27,9.01]
["TC0200000889.rn.1",9,9.89,-1.853,"down",0.000172559208213553,0.00129819229358061,"Nceh1","neutral cholesterol ester hydrolase 1","chr2","+","NM_001127524","coding",112868707,112934959,114,"2q24",294930,"NM_001127524","RefSeq","Rattus norvegicus neutral cholesterol ester hydrolase 1 (Nceh1), mRNA.","chr2",100,100,"NM_001127524","B2GV54","NM_001127524","Rn.229209","brain| dorsal root ganglion| heart| liver| lung| pancreas| prostate| juvenile| adult","NM_001127524","GO:0006470","protein dephosphorylation","inferred from electronic annotation","NM_001127524","GO:0005783","endoplasmic reticulum","inferred from electronic annotation","NM_001127524","GO:0017171","serine hydrolase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017805","Pfam","IPR013094","Alpha/beta hydrolase fold-3","Coding",9.12,8.84,9.04,9.71,10.05,9.91]
["TC0200000142.rn.1",7.56,5.99,2.969,"up",0.000174132825299119,0.00130550768591756,"Dhfr","dihydrofolate reductase","chr2","+","NM_130400","coding",21931886,21959657,80,"2q12",24312,"NM_130400","RefSeq","Rattus norvegicus dihydrofolate reductase (Dhfr), mRNA.","chr2",100,100,"NM_130400","Q920D2","NM_130400","Rn.24681","connective tissue| embryonic tissue| heart| kidney| ovary| pineal gland| metamorphosing embryo| fetus| juvenile| adult","NM_130400","GO:0006545","glycine biosynthetic process","inferred from electronic annotation",{"$nulls":4},"NM_130400","GO:0003729","mRNA binding","not recorded",{"$nulls":3},"ENSRNOT00000018259","Pfam","IPR001796","Dihydrofolate reductase domain","Coding",7.39,7.49,7.81,6,6.17,5.79]
["TC1900000511.rn.1",8.24,9.13,-1.853,"down",0.00017835031908666,0.00132265233559655,"Prmt7","protein arginine methyltransferase 7","chr19","+","NM_001014153","coding",38189573,38238838,232,"19q12",361402,"NM_001014153","RefSeq","Rattus norvegicus protein arginine methyltransferase 7 (Prmt7), mRNA.","chr19",100,100,"NM_001014153","Q5U4E8","NM_001014153","Rn.14954","brain| connective tissue| heart| lung| ovary| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| fetus| juvenile| adult","NM_001014153","GO:0000387","spliceosomal snRNP assembly","not recorded","NM_001014153","GO:0005634","nucleus","not recorded","NM_001014153","GO:0008469","histone-arginine N-methyltransferase activity","not recorded",{"$nulls":3},"ENSRNOT00000000275","Pfam","IPR010456","Ribosomal L11 methyltransferase, PrmA","Coding",8.11,8.14,8.46,9.21,9.26,8.92]
["TC0700001417.rn.1",5.58,6.16,-1.495,"down",0.000185051318831996,0.00135120910442648,"Kctd17","potassium channel tetramerization domain containing 17","chr7","+","NM_001134529","coding",119647297,119677405,277,"7q34",300317,"NM_001134529","RefSeq","Rattus norvegicus potassium channel tetramerization domain containing 17 (Kctd17), mRNA.","chr7",100,100,"NM_001134529","D3ZYQ0","NM_001134529","Rn.198231","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| ovary| spleen| metamorphosing embryo| juvenile| adult","NM_001134529","GO:0051260","protein homooligomerization","inferred from electronic annotation",{"$nulls":4},"NM_001134529","GO:0042802","identical protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000046563","Pfam","IPR003131","Potassium channel tetramerisation-type BTB domain","Coding",5.6,5.58,5.57,6.14,6.11,6.24]
["TC2000000627.rn.1",5.06,6.28,-2.329,"down",0.000187246464211427,0.00136037571301409,"Trappc3l","trafficking protein particle complex 3-like","chr20","+","ENSRNOT00000047000","coding",27578662,27665567,120,null,100362279,"ENSRNOT00000047000","ENSEMBL","ensembl:known chromosome:Rnor_5.0:20:29419771:29489157:1 gene:ENSRNOG00000031290 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000047000","D3ZEX3","ENSRNOT00000047000","Rn.82095","adult",{"$nulls":15},"ENSRNOT00000047000","Pfam","IPR007194","Transport protein particle (TRAPP) component","Coding",5.12,5.16,4.89,6.15,6.5,6.19]
["TC0300000794.rn.1",7.45,5.52,3.811,"up",0.000195258159001499,0.0014014659807926,"Cybrd1","cytochrome b reductase 1","chr3","+","NM_001011954","coding",57718496,57745749,40,"3q21",295669,"NM_001011954","RefSeq","Rattus norvegicus cytochrome b reductase 1 (Cybrd1), mRNA.","chr3",100,100,"NM_001011954","Q5RKJ2","NM_001011954","Rn.203500","connective tissue| eye| heart| kidney| lung| prostate| small intestine| juvenile| adult","NM_001011954","GO:0010039","response to iron ion","inferred from electronic annotation","NM_001011954","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001011954","GO:0000293","ferric-chelate reductase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012942","Pfam","IPR004877","Cytochrome b561, eukaryote","Coding",7.55,7.24,7.56,5.49,5.42,5.65]
["TC0200002127.rn.1",8.99,6.61,5.205,"up",0.000201840391963399,0.00142992228743728,"Sec24d","SEC24 family member D","chr2","+","ENSRNOT00000064809","coding",227455717,227563093,277,"2q42",310843,"ENSRNOT00000064809","ENSEMBL","ensembl:known chromosome:Rnor_5.0:2:246849788:246919956:1 gene:ENSRNOG00000014872 gene_biotype:protein_coding transcript_biotype:protein_coding","chr2",100,100,"ENSRNOT00000064809","G3V9S9","ENSRNOT00000064809","Rn.162618","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| kidney| liver| lung| ovary| pancreas| prostate| small intestine| spleen| thymus| fetus| juvenile| adult","ENSRNOT00000064809","GO:0001701","in utero embryonic development","not recorded","ENSRNOT00000064809","GO:0030127","COPII vesicle coat","inferred from electronic annotation","ENSRNOT00000064809","GO:0008270","zinc ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000064809","Pfam","IPR006895","Zinc finger, Sec23/Sec24-type","Coding",8.98,8.91,9.07,6.66,6.58,6.58]
["TC0400002940.rn.1",7.73,5.94,3.458,"up",0.000205807133267582,0.00144925383237032,"Fkbp14","FK506 binding protein 14","chr4","-","NM_001013210","coding",84752324,84768311,110,"4q24",362366,"NM_001013210","RefSeq","Rattus norvegicus FK506 binding protein 14 (Fkbp14), mRNA.","chr4",100,100,"NM_001013210","Q5XID8","NM_001013210","Rn.12713","brain| connective tissue| heart| kidney| lung| ovary| pituitary gland| placenta| spleen|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001013210","GO:0000413","protein peptidyl-prolyl isomerization","not recorded","NM_001013210","GO:0005789","endoplasmic reticulum membrane","not recorded","NM_001013210","GO:0003755","peptidyl-prolyl cis-trans isomerase activity","not recorded",{"$nulls":3},"ENSRNOT00000013205","Pfam","IPR001179","Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain","Coding",7.92,7.61,7.66,6.17,6.15,5.51]
["TC1500002107.rn.1",8.21,5.5,6.543,"up",0.0002097752870464,0.0014626578783452,"Lacc1","laccase (multicopper oxidoreductase) domain containing 1","chr15","-","ENSRNOT00000032295","coding",59199537,59217190,199,"15q11",313790,"ENSRNOT00000032295","ENSEMBL","ensembl:known chromosome:Rnor_5.0:15:62895970:62898184:-1 gene:ENSRNOG00000022094 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000032295","D3ZCR0","ENSRNOT00000032295","Rn.168042","embryonic tissue| eye| metamorphosing embryo| adult",{"$nulls":15},"ENSRNOT00000032295","Pfam","IPR003730","Multi-copper polyphenol oxidoreductase, laccase","Coding",8.35,8.02,8.26,5.28,5.54,5.67]
["TC0700003691.rn.1",5.7,7.33,-3.095,"down",0.00021147600893036,0.00147059637755376,"Dennd6b","DENN/MADD domain containing 6B","chr7","-","NM_001108749","coding",130164882,130178282,253,"7q34",362983,"NM_001108749","RefSeq","Rattus norvegicus DENN/MADD domain containing 6B (Dennd6b), mRNA.","chr7",100,100,"NM_001108749","D3ZAE3","NM_001108749","Rn.48823","brain| connective tissue| dorsal root ganglion| heart| liver| prostate| metamorphosing embryo| fetus| adult","NM_001108749","GO:0032313","regulation of Rab GTPase activity","inferred from electronic annotation",{"$nulls":4},"NM_001108749","GO:0017112","Rab guanyl-nucleotide exchange factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051347","Pfam","IPR001194","DENN domain","Coding",5.69,5.57,5.85,7.19,7.41,7.4]
["TC2000000621.rn.1",6.85,7.44,-1.505,"down",0.000219629658398677,0.001504411197178,"Tet1","tet methylcytosine dioxygenase 1","chr20","+","ENSRNOT00000000302","coding",27365582,27438045,170,"20p11",309902,"ENSRNOT00000000302","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:20:29201150:29267359:1 gene:ENSRNOG00000000277 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000000302","F1LUQ3",{"$nulls":3},"ENSRNOT00000000302","GO:0001826","inner cell mass cell differentiation","inferred from electronic annotation","ENSRNOT00000000302","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000000302","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000302","Pfam","IPR002857","Zinc finger, CXXC-type","Coding",6.74,6.9,6.91,7.39,7.41,7.52]
["TC0100001351.rn.1",4.78,5.48,-1.625,"down",0.000223976170250086,0.00152645201968979,null,null,"chr1","+",null,"coding",94699125,94701428,40,null,"NA","ENSRNOT00000049227","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:95798630:95800933:1 gene:ENSRNOG00000014998 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000049227","F1M3U6",{"$nulls":3},"ENSRNOT00000049227","GO:0010468","regulation of gene expression","inferred from electronic annotation","ENSRNOT00000049227","GO:0005777","peroxisome","inferred from electronic annotation",{"$nulls":11},"Coding",4.64,4.8,4.91,5.46,5.63,5.36]
["TC1300001185.rn.1",5.48,6.11,-1.548,"down",0.00023466147012113,0.00157204180388513,"Rnf152","ring finger protein 152","chr13","-","NM_001106305","coding",25186002,25262759,77,"13p13",293561,"NM_001106305","RefSeq","Rattus norvegicus ring finger protein 152 (Rnf152), mRNA.","chr13",100,100,"NM_001106305","D4A723","NM_001106305","Rn.169056","brain| eye| heart| kidney| metamorphosing embryo| juvenile| adult","NM_001106305","GO:0006915","apoptotic process","inferred from electronic annotation","NM_001106305","GO:0005764","lysosome","not recorded","NM_001106305","GO:0004842","ubiquitin-protein transferase activity","not recorded",{"$nulls":3},"ENSRNOT00000019921","Pfam","IPR018957","Zinc finger, C3HC4 RING-type","Coding",5.66,5.44,5.34,6.12,6.18,6.03]
["TC0X00000124.rn.1",6.77,7.13,-1.283,"down",0.000241895698989264,0.00159772985567861,"Tbc1d25","TBC1 domain family, member 25","chrX","+","NM_001106955","coding",15064704,15088583,85,"Xq13",302552,"NM_001106955","RefSeq","Rattus norvegicus TBC1 domain family, member 25 (Tbc1d25), mRNA.","chrX",100,100,"NM_001106955","B1WBS1","NM_001106955","Rn.34141","brain| dorsal root ganglion| heart| lung| ovary| placenta| prostate| juvenile| adult","NM_001106955","GO:0008152","metabolic process","inferred from electronic annotation","NM_001106955","GO:0005776","autophagic vacuole","inferred from electronic annotation","NM_001106955","GO:0005097","Rab GTPase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007130","Pfam","IPR000195","Rab-GTPase-TBC domain","Coding",6.78,6.7,6.84,7.13,7.14,7.11]
["TC0200001601.rn.1",8.14,6.23,3.758,"up",0.000243482769605269,0.00160574760471265,"Rab13","RAB13, member RAS oncogene family","chr2","+","NM_031092","coding",189581593,189586358,125,"2q34",81756,"NM_031092","RefSeq","Rattus norvegicus RAB13, member RAS oncogene family (Rab13), mRNA.","chr2",100,100,"NM_031092","P35286","NM_031092","Rn.9819","adipose tissue| brain| connective tissue| eye| heart| lung| prostate| spleen| adult","NM_031092","GO:0006184","GTP catabolic process","inferred from electronic annotation","NM_031092","GO:0005622","intracellular","not recorded","NM_031092","GO:0003924","GTPase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022627","Pfam","IPR000795","Elongation factor, GTP-binding domain","Coding",8.26,8.08,8.07,6.21,6.25,6.24]
["TC0200004036.rn.1",6.86,7.48,-1.537,"down",0.000250397986041367,0.00163240577334108,"Slc25a44","solute carrier family 25, member 44","chr2","-","NM_001108947","coding",187772010,187786829,114,"2q34",365841,"NM_001108947","RefSeq","Rattus norvegicus solute carrier family 25, member 44 (Slc25a44), mRNA.","chr2",100,100,"NM_001108947","D3ZSN7","NM_001108947","Rn.18145","brain| embryonic tissue| eye| kidney| lung| muscle| ovary| pancreas| prostate| small intestine| metamorphosing embryo| juvenile| adult","NM_001108947","GO:0055085","transmembrane transport","inferred from electronic annotation","NM_001108947","GO:0005739","mitochondrion","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000068360","Pfam","IPR018108","Mitochondrial substrate/solute carrier","Coding",6.8,6.78,6.99,7.62,7.47,7.35]
["TC1800001274.rn.1",6.81,7.43,-1.537,"down",0.000256712352011717,0.00165651941560012,"Ndufa2","NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2","chr18","-","NM_001106153","coding",29585671,29588037,50,"18p11",291660,"NM_001106153","RefSeq","Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 (Ndufa2), mRNA.","chr18",100,100,"NM_001106153","D3ZS58","NM_001106153","Rn.19077","brain| dorsal root ganglion| eye| kidney| liver| pancreas| placenta| adult","NM_001106153","GO:0055114","oxidation-reduction process","inferred from electronic annotation","NM_001106153","GO:0005739","mitochondrion","not recorded","NM_001106153","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000023811","Pfam","IPR007741","Ribosomal protein/NADH dehydrogenase domain","Coding",6.68,6.77,6.98,7.42,7.53,7.35]
["TC0300003383.rn.1",5.22,6.81,-3.01,"down",0.000265227394204676,0.00168924088470416,"Zfp385b","zinc finger protein 385B","chr3","-","NM_001107736","coding",64269807,64543100,202,"3q23",311137,"NM_001107736","RefSeq","Rattus norvegicus zinc finger protein 385B (Zfp385b), mRNA.","chr3",100,100,"NM_001107736","D3ZHY2","NM_001107736","Rn.34063","brain| connective tissue| heart| liver| juvenile| adult","NM_001107736","GO:0072332","intrinsic apoptotic signaling pathway by p53 class mediator","inferred from electronic annotation","NM_001107736","GO:0005634","nucleus","inferred from electronic annotation","NM_001107736","GO:0002039","p53 binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025803","Pfam","IPR022755","Zinc finger, double-stranded RNA binding","Coding",5.37,5.05,5.25,6.6,6.85,6.99]
["TC1900000922.rn.1",6.21,8.15,-3.837,"down",0.000270751066070148,0.0017096389562721,"Car7","carbonic anhydrase 7","chr19","-","NM_001106165","coding",636543,748560,83,"19p14",291819,"NM_001106165","RefSeq","Rattus norvegicus carbonic anhydrase 7 (Car7), mRNA.","chr19",100,100,"NM_001106165","B2RZ61","NM_001106165","Rn.16248","brain| dorsal root ganglion| embryonic tissue| adult","NM_001106165","GO:0006730","one-carbon metabolic process","inferred from electronic annotation","NM_001106165","GO:0005829","cytosol","not recorded","NM_001106165","GO:0004089","carbonate dehydratase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016521","Pfam","IPR001148","Alpha carbonic anhydrase","Coding",6.31,6.28,6.05,8.15,8.36,7.95]
["TC1600000082.rn.1",8.89,7.76,2.189,"up",0.000275221193181154,0.00172415120616347,"Rft1","RFT1 homolog (S. cerevisiae)","chr16","+","NM_001135866","coding",6712377,6746716,160,"16p16",290552,"NM_001135866","RefSeq","Rattus norvegicus RFT1 homolog (S. cerevisiae) (Rft1), mRNA.","chr16",100,100,"NM_001135866","D4A6W4","NM_001135866","Rn.32400","brain| pituitary gland| prostate| thymus| fetus| juvenile| adult","NM_001135866","GO:0006869","lipid transport","inferred from electronic annotation","NM_001135866","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001135866","GO:0005319","lipid transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000035542","Pfam","IPR007594","RFT1","Coding",9.03,8.75,8.89,7.76,7.82,7.7]
["TC0700003007.rn.1",17.43,15.83,3.031,"up",0.00027970288068181,0.00173765718686138,null,null,"chr7","-",null,"coding",76034679,76035096,17,null,"NA","ENSRNOT00000072255","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:76166623:76167040:-1 gene:ENSRNOG00000047234 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000072255","M0R539",{"$nulls":22},"Coding",16.97,17.86,17.46,15.9,15.63,15.96]
["TC0X00000927.rn.1",5.34,7.01,-3.182,"down",0.000285952110355311,0.0017614447194972,"Il1rapl2","interleukin 1 receptor accessory protein-like 2","chrX","+","NM_001166342","coding",108287034,109851075,150,"Xq35",300913,"NM_001166342","RefSeq","Rattus norvegicus interleukin 1 receptor accessory protein-like 2 (Il1rapl2), mRNA.","chrX",100,100,"NM_001166342","F1M3X6","NM_001166342","Rn.208232",null,"NM_001166342","GO:0019221","cytokine-mediated signaling pathway","inferred from electronic annotation",{"$nulls":4},"NM_001166342","GO:0004910","interleukin-1, Type II, blocking receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000040816","Pfam","IPR000157","Toll/interleukin-1 receptor homology (TIR) domain","Coding",5.43,5.37,5.23,6.83,7.15,7.04]
["TC0800002666.rn.1",8.71,9.63,-1.892,"down",0.000294112893673397,0.00179516341391447,"Bbs4","Bardet-Biedl syndrome 4","chr8","-","NM_001106826","coding",64121392,64154396,204,"8q24",300754,"NM_001106826","RefSeq","Rattus norvegicus Bardet-Biedl syndrome 4 (Bbs4), mRNA.","chr8",100,100,"NM_001106826","D4A8B1","NM_001106826","Rn.25002","brain| eye| kidney| lung| pancreas| pineal gland| placenta| prostate| juvenile| adult","NM_001106826","GO:0000226","microtubule cytoskeleton organization","not recorded","NM_001106826","GO:0000242","pericentriolar material","inferred from electronic annotation","NM_001106826","GO:0001103","RNA polymerase II repressing transcription factor binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000031262","Pfam","IPR001440","Tetratricopeptide TPR1","Coding",8.81,8.54,8.79,9.58,9.73,9.59]
["TC0500001528.rn.1",6.06,6.57,-1.424,"down",0.000301127284700274,0.00182197215692388,"Sync","syncoilin, intermediate filament protein","chr5","+","NM_001108683","coding",147475811,147500544,180,"5q36",362606,"NM_001108683","RefSeq","Rattus norvegicus syncoilin, intermediate filament protein (Sync), mRNA.","chr5",100,100,"NM_001108683","D3ZM91","NM_001108683","Rn.214505","brain| heart| ovary| prostate| juvenile| adult","NM_001108683","GO:0045103","intermediate filament-based process","inferred from electronic annotation","NM_001108683","GO:0005737","cytoplasm","not recorded","NM_001108683","GO:0005198","structural molecule activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000010730","Pfam","IPR001664","Intermediate filament protein","Coding",6.16,6,6.01,6.52,6.72,6.48]
["TC1800000729.rn.1",5.36,4.91,1.366,"up",0.000308639490894413,0.00184932067150325,"Cidea","cell death-inducing DFFA-like effector a","chr18","+","NM_001170467","coding",63082861,63108450,80,"18q12.1",291541,"NM_001170467","RefSeq","Rattus norvegicus cell death-inducing DFFA-like effector a (Cidea), mRNA.","chr18",100,100,"NM_001170467","D4ACH9","NM_001170467","Rn.8171","heart| lung| nerve| ovary| adult","NM_001170467","GO:0001659","temperature homeostasis","inferred from electronic annotation","NM_001170467","GO:0005634","nucleus","inferred from electronic annotation","NM_001170467","GO:0042803","protein homodimerization activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024968","Pfam","IPR003508","CIDE-N domain","Coding",5.33,5.41,5.33,5.03,4.91,4.8]
["TC1300002000.rn.1",6.95,8.23,-2.428,"down",0.000313525716487232,0.00186602366965609,"Chml","choroideremia-like (Rab escort protein 2)","chr13","-","NM_001109524","coding",93740759,93742624,30,"13q25",689102,"NM_001109524","RefSeq","Rattus norvegicus choroideremia-like (Rab escort protein 2) (Chml), mRNA.","chr13",100,100,null,null,"NM_001109524","Rn.218706",null,"NM_001109524","GO:0018344","protein geranylgeranylation","not recorded","NM_001109524","GO:0005968","Rab-protein geranylgeranyltransferase complex","not recorded","NM_001109524","GO:0017137","Rab GTPase binding","not recorded",{"$nulls":7},"Coding",6.8,6.83,7.23,8,8.14,8.56]
["TC0700000419.rn.1",8.4,9.25,-1.803,"down",0.00031951118218498,0.0018852679163503,"Slc41a2","solute carrier family 41 (magnesium transporter), member 2","chr7","+","NM_001108742","coding",26509068,26608147,196,"7q13",362861,"NM_001108742","RefSeq","Rattus norvegicus solute carrier family 41 (magnesium transporter), member 2 (Slc41a2), mRNA.","chr7",100,100,"NM_001108742","D4A7D4","NM_001108742","Rn.7329","brain| connective tissue| dorsal root ganglion| liver| ovary| prostate| small intestine| spleen| juvenile| adult","NM_001108742","GO:0006812","cation transport","inferred from electronic annotation",{"$nulls":4},"NM_001108742","GO:0008324","cation transmembrane transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000011572","Pfam","IPR006667","SLC41 divalent cation transporters, integral membrane domain","Coding",8.52,8.4,8.27,9.14,9.33,9.27]
["TC1200001358.rn.1",5.74,4.78,1.945,"up",0.000324828698529602,0.00190114532417713,"Mlxipl","MLX interacting protein-like","chr12","-","NM_133552","coding",24590645,24619639,177,null,171078,"NM_133552","RefSeq","Rattus norvegicus MLX interacting protein-like (Mlxipl), mRNA.","chr12",100,100,"NM_133552","Q8VIP2","NM_133552","Rn.144656","brain| kidney| liver| pancreas| adult","NM_133552","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","not recorded","NM_133552","GO:0005634","nucleus","inferred from direct assay","NM_133552","GO:0003677","DNA binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000074230","Pfam","IPR011598","Myc-type, basic helix-loop-helix (bHLH) domain","Coding",5.55,5.6,6.08,4.72,4.7,4.92]
["TC2000000768.rn.1",4.52,5.31,-1.729,"down",0.000330195192869382,0.00191513211864242,"Hs3st5","heparan sulfate (glucosamine) 3-O-sulfotransferase 5","chr20","+","NM_001106392","coding",40236437,40545502,80,"20q12",294449,"NM_001106392","RefSeq","Rattus norvegicus heparan sulfate (glucosamine) 3-O-sulfotransferase 5 (Hs3st5), mRNA.","chr20",100,100,"NM_001106392","D3ZDL1","NM_001106392","Rn.19322","brain| lung| adult","NM_001106392","GO:0006477","protein sulfation","inferred from electronic annotation",{"$nulls":4},"NM_001106392","GO:0008467","[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000743","Pfam","IPR000863","Sulfotransferase domain","Coding",4.42,4.63,4.51,5.29,5.12,5.51]
["TC0800001627.rn.1",4.3,5.16,-1.815,"down",0.000336049552471255,0.00193250177618197,"LOC680503","hypothetical protein LOC680503","chr8","+","LOC680503.aSep08-unspliced","coding",120491263,120492875,30,null,"NA","LOC680503.aSep08-unspliced","Ace View","hypothetical protein LOC680503","chr8",100,100,{"$nulls":24},"Coding",4.21,4.31,4.37,5.36,4.84,5.29]
["TC0100000622.rn.1",5.55,6.73,-2.266,"down",0.00033997263636885,0.00194586608926396,null,null,"chr1","+",null,"coding",58852954,58853694,30,null,"NA","ENSRNOT00000073357","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:59778563:59779303:1 gene:ENSRNOG00000048756 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000073357","M0RCN4",{"$nulls":3},"ENSRNOT00000073357","GO:0008152","metabolic process","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000073357","GO:0004807","triose-phosphate isomerase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073357","Pfam","IPR000652","Triosephosphate isomerase","Coding",5.82,5.46,5.36,6.66,7.09,6.43]
["TC1900001266.rn.1",6.83,6.25,1.495,"up",0.000343411860040882,0.00195779698745329,"Inpp4b","inositol polyphosphate-4-phosphatase, type II","chr19","-","NM_053917","coding",29598104,30346586,294,"19q11",116699,"NM_053917","RefSeq","Rattus norvegicus inositol polyphosphate-4-phosphatase, type II (Inpp4b), mRNA.","chr19",100,100,"NM_053917","Q9QWG5","NM_053917","Rn.10829","brain| embryonic tissue| eye| heart| liver| lung| placenta| spleen|tailbud embryo| metamorphosing embryo| adult","NM_053917","GO:0006874","cellular calcium ion homeostasis","inferred from electronic annotation","NM_053917","GO:0005737","cytoplasm","not recorded","NM_053917","GO:0008289","lipid binding","inferred from electronic annotation",{"$nulls":7},"Coding",6.74,6.76,6.99,6.24,6.3,6.22]
["TC1600000756.rn.1",8.34,9.56,-2.329,"down",0.000349082340487256,0.00197424617027383,"LOC681180","similar to RIKEN cDNA 1700001E04","chr16","+","ENSRNOT00000074550","coding",66225859,66237007,100,null,302192,"ENSRNOT00000074550","ENSEMBL","ensembl:known chromosome:Rnor_5.0:16:65871827:65875144:1 gene:ENSRNOG00000046576 gene_biotype:protein_coding transcript_biotype:protein_coding","chr16",100,100,"ENSRNOT00000074550","A4FTZ7","ENSRNOT00000074550","Rn.109953","testis",{"$nulls":15},"ENSRNOT00000074550","Pfam","IPR006907","Domain of unknown function DUF622","Coding",8.29,8.42,8.32,9.27,9.37,10.03]
["TC0500003527.rn.1",7.2,5.58,3.074,"up",0.0003614947572866,0.00202189532773181,"Exo5","exonuclease 5","chr5","-","NM_001107973","coding",139849926,139853247,30,"5q36",313563,"NM_001107973","RefSeq","Rattus norvegicus exonuclease 5 (Exo5), mRNA.","chr5",100,100,"NM_001107973","D3ZLE0","NM_001107973","Rn.35470","kidney| pituitary gland| prostate| metamorphosing embryo| adult","NM_001107973","GO:0000738","DNA catabolic process, exonucleolytic","inferred from electronic annotation","NM_001107973","GO:0005634","nucleus","inferred from electronic annotation","NM_001107973","GO:0045145","single-stranded DNA 5'-3' exodeoxyribonuclease activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000056644","Pfam","IPR019190","Exonuclease V","Coding",7.12,7.1,7.39,5.74,5.51,5.49]
["TC0800001910.rn.1",9.55,7.23,4.993,"up",0.000364847726829351,0.00203265029786381,"Arhgap42","Rho GTPase activating protein 42","chr8","-","ENSRNOT00000009167","coding",7211003,7446364,336,"8q11",500943,"ENSRNOT00000009167","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:8:7327372:7426476:-1 gene:ENSRNOG00000026821 gene_biotype:protein_coding transcript_biotype:protein_coding","chr8",100,100,"ENSRNOT00000009167","D4A3W0","ENSRNOT00000009167","Rn.120239","brain| placenta| metamorphosing embryo| juvenile| adult","ENSRNOT00000009167","GO:0007165","signal transduction","inferred from electronic annotation","ENSRNOT00000009167","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000009167","GO:0005096","GTPase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000031492","Pfam","IPR000198","Rho GTPase-activating protein domain","Coding",9.51,9.7,9.43,7.16,7.32,7.22]
["TC0100002700.rn.1",6.34,7.05,-1.636,"down",0.000371974745338696,0.00205572015192525,"Tacc2","transforming, acidic coiled-coil containing protein 2","chr1","+","NM_001004415","coding",201055644,201329612,380,"1q37",309025,"NM_001004415","RefSeq","Rattus norvegicus transforming, acidic coiled-coil containing protein 2 (Tacc2), transcript variant 1, mRNA.","chr1",100,100,"NM_001004415","D3ZXK3","NM_001004415","Rn.13989","brain| connective tissue| embryonic tissue| heart| lung| pituitary gland| placenta| prostate| small intestine|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001004415","GO:0000226","microtubule cytoskeleton organization","not recorded","NM_001004415","GO:0005634","nucleus","not recorded","NM_001004415","GO:0019904","protein domain specific binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000047161","Pfam","IPR007707","Transforming acidic coiled-coil","Coding",6.24,6.35,6.44,7,6.99,7.17]
["TC0900000922.rn.1",8.09,9.22,-2.189,"down",0.00038311809526156,0.00209347103893946,"Fam134a","family with sequence similarity 134, member A","chr9","+","NM_001100760","coding",82344326,82351976,237,"9q33",363252,"NM_001100760","RefSeq","Rattus norvegicus family with sequence similarity 134, member A (Fam134a), mRNA.","chr9",100,100,"NM_001100760","Q3MHU5","NM_001100760","Rn.13737","adipose tissue| brain| colon| dorsal root ganglion| eye| kidney| liver| lung| nerve| ovary| pancreas| pineal gland| placenta| prostate| spleen| testis| fetus| juvenile| adult",{"$nulls":4},"NM_001100760","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000057330","Pfam","IPR003388","Reticulon","Coding",8.08,7.92,8.27,9.27,9.36,9.03]
["TC1000003679.rn.1",12.85,12.37,1.395,"up",0.000391566177181194,0.0021216144927681,"Kpnb1","karyopherin (importin) beta 1","chr10","-","NM_017063","coding",85093826,85124953,310,"10q32.1",24917,"NM_017063","RefSeq","Rattus norvegicus karyopherin (importin) beta 1 (Kpnb1), mRNA.","chr10",100,100,"NM_017063","P52296","NM_017063","Rn.11061","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_017063","GO:0006606","protein import into nucleus","not recorded","NM_017063","GO:0005622","intracellular","not recorded","NM_017063","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000012376","Pfam","IPR000357","HEAT","Coding",12.89,12.76,12.9,12.31,12.36,12.45]
["TC1000004101.rn.1",7.26,5.48,3.434,"up",0.000404409587365293,0.00216887895712334,"Cd300lf","Cd300 molecule-like family member F","chr10","-","NM_001025111","coding",103669781,103685890,100,"10q32.2",287818,"NM_001025111","RefSeq","Rattus norvegicus Cd300 molecule-like family member F (Cd300lf), mRNA.","chr10",100,100,"NM_001025111","Q566E6","NM_001025111","Rn.130740","brain| spleen| juvenile","NM_001025111","GO:0002376","immune system process","inferred from electronic annotation","NM_001025111","GO:0005886","plasma membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000039284","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",7.05,7.28,7.46,5.67,5.22,5.55]
["TC1800001603.rn.1",12.47,13.88,-2.657,"down",0.00041304788662726,0.00219969146977212,"Cycs","similar to Cytochrome c, somatic","chr18","-","ENSRNOT00000048429","coding",62475572,62476771,30,"1p11",679794,"ENSRNOT00000048429","ENSEMBL","ensembl:known chromosome:Rnor_5.0:18:61664138:61664455:-1 gene:ENSRNOG00000032885 gene_biotype:protein_coding transcript_biotype:protein_coding","chr18",100,100,"ENSRNOT00000048429","P62898","ENSRNOT00000048429","Rn.2202","brain| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| spleen| thymus|tailbud embryo| fetus| juvenile| adult","ENSRNOT00000048429","GO:0002931","response to ischemia","inferred from direct assay","ENSRNOT00000048429","GO:0005739","mitochondrion","inferred from direct assay","ENSRNOT00000048429","GO:0005506","iron ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000048429","Pfam","IPR003088","Cytochrome c domain","Coding",12.5,12.64,12.28,13.74,14.08,13.82]
["TC1600001669.rn.1",17.89,16.49,2.639,"up",0.000420312675783164,0.00221966287519824,null,null,"chr16","-",null,"coding",50205411,50213538,6,null,"NA","ENSRNOT00000062955","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:49928368:49936495:-1 gene:ENSRNOG00000048208 gene_biotype:protein_coding transcript_biotype:protein_coding","chr16",100,100,"ENSRNOT00000062955","M0R4K1",{"$nulls":22},"Coding",17.54,18.34,17.79,16.58,16.32,16.56]
["TC0600002481.rn.1",11.81,12.97,-2.235,"down",0.000431252060588554,0.00225667697411252,"Ralgapa1","Ral GTPase activating protein, alpha subunit 1 (catalytic)","chr6","-","NM_020083","coding",76386975,76661530,477,"6q23",56785,"NM_020083","RefSeq","Rattus norvegicus Ral GTPase activating protein, alpha subunit 1 (catalytic) (Ralgapa1), mRNA.","chr6",100,100,"NM_020083","O55007","NM_020083","Rn.86984","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| ovary| pancreas| pituitary gland| placenta| prostate| thymus| metamorphosing embryo| juvenile| adult","NM_020083","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","NM_020083","GO:0005634","nucleus","inferred from electronic annotation","NM_020083","GO:0005096","GTPase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000010824","Pfam","IPR000331","Rap GTPase activating protein domain","Coding",11.75,11.77,11.92,12.78,13.03,13.1]
["TC0800000943.rn.1",9.96,8.62,2.532,"up",0.000443977397286139,0.00229944286471602,"Spg21","spastic paraplegia 21 homolog (human)","chr8","+","NM_001006987","coding",70994543,71022629,120,"8q24",300791,"NM_001006987","RefSeq","Rattus norvegicus spastic paraplegia 21 homolog (human) (Spg21), mRNA.","chr8",100,100,"NM_001006987","Q5XIC4","NM_001006987","Rn.19459","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| prostate| spleen| testis| thymus| metamorphosing embryo| juvenile| adult","NM_001006987","GO:0008150","biological_process","no biological data available","NM_001006987","GO:0005634","nucleus","inferred from electronic annotation","NM_001006987","GO:0042609","CD4 receptor binding","not recorded",{"$nulls":3},"ENSRNOT00000051504","Pfam","IPR000073","Alpha/beta hydrolase fold-1","Coding",10.13,9.77,9.98,8.59,8.79,8.48]
["TC1100001023.rn.1",5.73,5.1,1.548,"up",0.000453670471336658,0.00233088132433868,"Sdf2l1","stromal cell-derived factor 2-like 1","chr11","+","NM_001109433","coding",88122235,88124520,60,"11q23",680945,"NM_001109433","RefSeq","Rattus norvegicus stromal cell-derived factor 2-like 1 (Sdf2l1), mRNA.","chr11",100,100,"NM_001109433","D4A9Y0","NM_001109433","Rn.1414","adrenal gland| connective tissue| dorsal root ganglion| heart| kidney| liver| pancreas| placenta| prostate| juvenile| adult","NM_001109433","GO:0034976","response to endoplasmic reticulum stress","inferred from direct assay","NM_001109433","GO:0005783","endoplasmic reticulum","inferred from direct assay","NM_001109433","GO:0051787","misfolded protein binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000002540","Pfam","IPR016093","MIR motif","Coding",5.9,5.53,5.77,5.03,5.02,5.25]
["TC1000001435.rn.1",10.92,12.25,-2.514,"down",0.000463254436292024,0.00236295781613632,"Tob1","transducer of ErbB-2.1","chr10","+","NM_133317","coding",81913689,81915727,30,"10q26",170842,"NM_133317","RefSeq","Rattus norvegicus transducer of ErbB-2.1 (Tob1), mRNA.","chr10",100,100,"NM_133317","Q8R5K6","NM_133317","Rn.7819","brain| connective tissue| eye| heart| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| testis| thymus|tailbud embryo| juvenile| adult","NM_133317","GO:0007184","SMAD protein import into nucleus","not recorded","NM_133317","GO:0005737","cytoplasm","not recorded","NM_133317","GO:0003714","transcription corepressor activity","not recorded",{"$nulls":3},"ENSRNOT00000003780","Pfam","IPR002087","Anti-proliferative protein","Coding",10.67,11.05,11.05,12.36,12.25,12.14]
["TC0900000630.rn.1",3.3,2.84,1.376,"up",0.000471034700265579,0.00238413280253886,null,null,"chr9","+",null,"coding",54913412,54913899,30,null,"NA","ENSRNOT00000066710","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:54619728:54620215:1 gene:ENSRNOG00000042290 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000066710","F1LY34",{"$nulls":3},"ENSRNOT00000066710","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000066710","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000066710","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000066710","Pfam","IPR020783","Ribosomal protein L11, C-terminal","Coding",3.3,3.23,3.36,2.89,2.86,2.78]
["TC0300003702.rn.1",8.68,7.87,1.753,"up",0.000477725722470387,0.00239635389114441,"Cd82","Cd82 molecule","chr3","-","NM_031797","coding",82324328,82368851,211,"3q24",83628,"NM_031797","RefSeq","Rattus norvegicus Cd82 molecule (Cd82), mRNA.","chr3",100,100,"NM_031797","O70352","NM_031797","Rn.3022","brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| fetus| juvenile| adult","NM_031797","GO:0008150","biological_process","no biological data available","NM_031797","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_031797","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000000052","Pfam","IPR018499","Tetraspanin/Peripherin","Coding",8.73,8.65,8.65,7.64,8.14,7.83]
["TC0600001601.rn.1",5.61,6.69,-2.114,"down",0.000478872324116475,0.00240038232485872,"Trmt61a","tRNA methyltransferase 61 homolog A (S. cerevisiae) (Trmt61a), mRNA.","chr6","+","NM_001007706_2","coding",136244502,136250492,40,null,"NA","NM_001007706_2","RefSeq","tRNA methyltransferase 61 homolog A (S. cerevisiae) (Trmt61a), mRNA.","chr6",100,100,{"$nulls":24},"Coding",5.43,5.48,5.93,6.53,6.85,6.69]
["TC1400002320.rn.1",7.32,8.13,-1.753,"down",0.000488888326172531,0.00243197339042492,"Slc1a4","solute carrier family 1 (glutamate/neutral amino acid transporter), member 4","chr14","-","NM_198763","coding",104581649,104613531,155,"14q22",305540,"NM_198763","RefSeq","Rattus norvegicus solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 (Slc1a4), mRNA.","chr14",100,100,"NM_198763","Q76GL9","NM_198763","Rn.52251","brain| connective tissue| dorsal root ganglion| embryonic tissue| kidney| liver| pancreas| pituitary gland| placenta| testis| metamorphosing embryo| juvenile| adult","NM_198763","GO:0003333","amino acid transmembrane transport","not recorded","NM_198763","GO:0005813","centrosome","not recorded","NM_198763","GO:0005254","chloride channel activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007002","Pfam","IPR001991","Sodium:dicarboxylate symporter","Coding",7.23,7.22,7.52,8.21,8.07,8.1]
["TC0X00001296.rn.1",7.61,6.02,3.01,"up",0.000503885315068338,0.0024796010787683,"Dnase1l1","deoxyribonuclease 1-like 1","chrX","+","NM_001014223","coding",156429531,156438066,170,null,363522,"NM_001014223","RefSeq","Rattus norvegicus deoxyribonuclease 1-like 1 (Dnase1l1), mRNA.","chrX",100,100,"NM_001014223","Q2QDE7","NM_001014223","Rn.163455","brain| colon| connective tissue| liver| lung| muscle| spleen| juvenile| adult","NM_001014223","GO:0000737","DNA catabolic process, endonucleolytic","inferred from electronic annotation","NM_001014223","GO:0005783","endoplasmic reticulum","inferred from electronic annotation","NM_001014223","GO:0016888","endodeoxyribonuclease activity, producing 5'-phosphomonoesters","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000056285","Pfam","IPR005135","Endonuclease/exonuclease/phosphatase","Coding",7.55,7.37,7.92,6.01,6.13,5.91]
["TC1100001938.rn.1",7.75,8.18,-1.347,"down",0.000506041114031517,0.00248592530603045,"Abcf3","ATP-binding cassette, subfamily F (GCN20), member 3","chr11","-","NM_001011896","coding",84025789,84038276,290,"11q23",287982,"NM_001011896","RefSeq","Rattus norvegicus ATP-binding cassette, subfamily F (GCN20), member 3 (Abcf3), mRNA.","chr11",100,100,"NM_001011896","Q66H39","NM_001011896","Rn.98647","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| juvenile| adult","NM_001011896","GO:0006200","ATP catabolic process","inferred from electronic annotation",{"$nulls":4},"NM_001011896","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002327","Pfam","IPR003439","ABC transporter-like","Coding",7.75,7.71,7.8,8.03,8.24,8.27]
["TC1900001436.rn.1",9.13,10.49,-2.567,"down",0.000518913099083948,0.00252982908927259,"Phlpp2","PH domain and leucine rich repeat protein phosphatase 2","chr19","-","NM_001109131","coding",41731845,41798451,200,"19q12",498949,"NM_001109131","RefSeq","Rattus norvegicus PH domain and leucine rich repeat protein phosphatase 2 (Phlpp2), mRNA.","chr19",100,100,"NM_001109131","D4A254","NM_001109131","Rn.214939","lung| pancreas| adult","NM_001109131","GO:0006470","protein dephosphorylation","inferred from direct assay","NM_001109131","GO:0001917","photoreceptor inner segment","inferred from direct assay","NM_001109131","GO:0004722","protein serine/threonine phosphatase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000021744","Pfam","IPR001611","Leucine-rich repeat","Coding",8.96,9.19,9.23,10.44,10.41,10.62]
["TC0300000179.rn.1",11.54,10.91,1.548,"up",0.00052284635673892,0.00253910094014867,"Setx","senataxin","chr3","+","ENSRNOT00000017984","coding",7680439,7731816,460,"3p12",362096,"ENSRNOT00000017984","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:13035150:13077865:1 gene:ENSRNOG00000013491 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000017984","D4AEB3",{"$nulls":3},"ENSRNOT00000017984","GO:0006302","double-strand break repair","inferred from electronic annotation","ENSRNOT00000017984","GO:0005634","nucleus","not recorded","ENSRNOT00000017984","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",11.47,11.62,11.52,10.81,10.94,10.97]
["TC0100007030.rn.1",6.04,6.52,-1.395,"down",0.000538492143083359,0.00258767667489358,"Ighmbp2","immunoglobulin mu binding protein 2","chr1","-","NM_031586","coding",218508957,218532826,220,"1q42",29532,"NM_031586","RefSeq","Rattus norvegicus immunoglobulin mu binding protein 2 (Ighmbp2), mRNA.","chr1",100,100,"NM_031586","Q9EQN5","NM_031586","Rn.23984","brain| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| lung| pituitary gland| prostate| spleen| metamorphosing embryo| juvenile| adult","NM_031586","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from direct assay","NM_031586","GO:0005634","nucleus","inferred from electronic annotation","NM_031586","GO:0000049","tRNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018487","Pfam","IPR000058","Zinc finger, AN1-type","Coding",6.09,6.06,5.98,6.43,6.44,6.68]
["TC1400000506.rn.1",9.64,10.6,-1.945,"down",0.000548704517860075,0.00261424744370471,"Apbb2","amyloid beta (A4) precursor protein-binding, family B, member 2","chr14","+","ENSRNOT00000029018","coding",43335040,43528381,240,"14p11",305338,"ENSRNOT00000029018","ENSEMBL","ensembl:known chromosome:Rnor_5.0:14:43166629:43317056:1 gene:ENSRNOG00000025509 gene_biotype:protein_coding transcript_biotype:protein_coding","chr14",100,100,"ENSRNOT00000029018","F1M2G6","ENSRNOT00000029018","Rn.24283","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| juvenile| adult","ENSRNOT00000029018","GO:0001764","neuron migration","inferred from electronic annotation","ENSRNOT00000029018","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000029018","GO:0008134","transcription factor binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000029018","Pfam","IPR001202","WW domain","Coding",9.29,9.65,9.97,10.43,10.73,10.65]
["TC1500000557.rn.1",9.22,8.29,1.905,"up",0.000555399451672905,0.00263602291666941,"Mphosph8","M-phase phosphoprotein 8","chr15","+","NM_001017375","coding",36809329,36947107,664,"15p12",290270,"NM_001017375","RefSeq","Rattus norvegicus M-phase phosphoprotein 8 (Mphosph8), mRNA.","chr15",100,100,"NM_001017375","G3V8T1","NM_001017375","Rn.42579","adipose tissue| brain| colon| dorsal root ganglion| embryonic tissue| eye| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001017375","GO:0006351","transcription, DNA-templated","inferred from electronic annotation","NM_001017375","GO:0000788","nuclear nucleosome","inferred from electronic annotation","NM_001017375","GO:0035064","methylated histone binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000028145","Pfam","IPR002110","Ankyrin repeat","Coding",9.43,9.14,9.1,8.13,8.35,8.39]
["TC0100003634.rn.1",6.5,7.17,-1.591,"down",0.00056883363595902,0.00267417839511861,"Zfyve27","zinc finger, FYVE domain containing 27","chr1","+","NM_199104","coding",261415177,261438539,270,"1q54",309376,"NM_199104","RefSeq","Rattus norvegicus zinc finger, FYVE domain containing 27 (Zfyve27), mRNA.","chr1",100,100,"NM_199104","Q6P7B7","NM_199104","Rn.8961","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_199104","GO:0031175","neuron projection development","inferred from mutant phenotype","NM_199104","GO:0005737","cytoplasm","not recorded","NM_199104","GO:0046872","metal ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000040740","Pfam","IPR000306","FYVE zinc finger","Coding",6.3,6.57,6.64,7.15,7.19,7.17]
["TC0X00000023.rn.1",9.84,11.05,-2.313,"down",0.000573646867688917,0.00268955998343433,"Slc9a7","solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7","chrX","+","NM_001108242","coding",2434903,2619379,193,"Xq12",317170,"NM_001108242","RefSeq","Rattus norvegicus solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 (Slc9a7), mRNA.","chrX",100,100,"NM_001108242","D3ZCI2","NM_001108242","Rn.218517",null,"NM_001108242","GO:0006885","regulation of pH","inferred from electronic annotation","NM_001108242","GO:0005802","trans-Golgi network","inferred from electronic annotation","NM_001108242","GO:0015385","sodium:proton antiporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005623","Pfam","IPR006153","Cation/H+ exchanger","Coding",9.98,9.77,9.76,10.92,11.2,11.02]
["TC0700002116.rn.1",6.98,8.46,-2.789,"down",0.000590914612246541,0.00274239319512013,"Matk","megakaryocyte-associated tyrosine kinase","chr7","-","NM_021859","coding",11325243,11331043,170,"7q11",60450,"NM_021859","RefSeq","Rattus norvegicus megakaryocyte-associated tyrosine kinase (Matk), mRNA.","chr7",100,100,"NM_021859","P41243","NM_021859","Rn.44303","brain| dorsal root ganglion| liver| adult","NM_021859","GO:0018108","peptidyl-tyrosine phosphorylation","inferred from electronic annotation","NM_021859","GO:0005634","nucleus","inferred from electronic annotation","NM_021859","GO:0004715","non-membrane spanning protein tyrosine kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000027730","Pfam","IPR000719","Protein kinase domain","Coding",6.88,6.95,7.11,8.5,8.6,8.27]
["TC1100001658.rn.1",12.17,12.83,-1.58,"down",0.000602324286914331,0.00277311825814706,"Gsk3b","glycogen synthase kinase 3 beta","chr11","-","NM_032080","coding",65065104,65210135,237,"11q21",84027,"NM_032080","RefSeq","Rattus norvegicus glycogen synthase kinase 3 beta (Gsk3b), mRNA.","chr11",100,100,"NM_032080","P18266","NM_032080","Rn.10426","brain| connective tissue| dorsal root ganglion| eye| pancreas| pineal gland| prostate| testis| juvenile| adult","NM_032080","GO:0000320","re-entry into mitotic cell cycle","inferred from electronic annotation","NM_032080","GO:0005634","nucleus","inferred from direct assay","NM_032080","GO:0001085","RNA polymerase II transcription factor binding","inferred from electronic annotation","NM_032080","GenMAPP","Cell_cycle_KEGG","ENSRNOT00000003867","Pfam","IPR000719","Protein kinase domain","Coding",12.11,12.19,12.2,12.75,12.88,12.85]
["TC1000001686.rn.1",7.39,7.93,-1.454,"down",0.000605788147263659,0.00277964220580234,"Tmub2","transmembrane and ubiquitin-like domain containing 2","chr10","+","NM_001031651","coding",90230441,90234875,103,"10q32.1",303567,"NM_001031651","RefSeq","Rattus norvegicus transmembrane and ubiquitin-like domain containing 2 (Tmub2), mRNA.","chr10",100,100,"NM_001031651","Q4FZV7","NM_001031651","Rn.143886","adrenal gland| brain| connective tissue| eye| heart| kidney| liver| nerve| ovary| pancreas| placenta| prostate| spleen| testis| thymus| juvenile| adult",{"$nulls":4},"NM_001031651","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000055185","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000055185","Pfam","IPR000626","Ubiquitin-like","Coding",7.39,7.22,7.55,8.01,7.95,7.82]
["TC0500004203.rn.1",5.77,6.48,-1.636,"down",0.000621925623766738,0.00282443660403974,"Mib2","mindbomb E3 ubiquitin protein ligase 2","chr5","-","NM_001005901","coding",173082943,173099042,296,"5q36",474147,"NM_001005901","RefSeq","Rattus norvegicus mindbomb E3 ubiquitin protein ligase 2 (Mib2), mRNA.","chr5",100,100,"NM_001005901","Q68LP1","NM_001005901","Rn.158815","adipose tissue| brain| connective tissue| heart| placenta| testis| juvenile| adult","NM_001005901","GO:0007219","Notch signaling pathway","inferred from electronic annotation","NM_001005901","GO:0000151","ubiquitin ligase complex","inferred from electronic annotation","NM_001005901","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000023696","Pfam","IPR000433","Zinc finger, ZZ-type","Coding",5.73,5.85,5.72,6.47,6.48,6.48]
["TC0500001154.rn.1",6.35,6.7,-1.275,"down",0.000633473593124295,0.00285745774764013,"RGD1559786","similar to RIKEN cDNA 0610037L13","chr5","+","NM_001034132","coding",127488949,127498732,152,"5q35",298384,"NM_001034132","RefSeq","Rattus norvegicus similar to RIKEN cDNA 0610037L13 (RGD1559786), mRNA.","chr5",100,100,"NM_001034132","Q498R7","NM_001034132","Rn.104738","brain| connective tissue| eye| kidney| lung| muscle| nerve| ovary| pancreas| pituitary gland| prostate| small intestine| spleen| testis| thymus| vibrissa| metamorphosing embryo| juvenile| adult","NM_001034132","GO:0008150","biological_process","no biological data available","NM_001034132","GO:0070062","extracellular vesicular exosome","not recorded","NM_001034132","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000065275","Pfam","IPR008584","Protein of unknown function DUF866, eukaryotic","Coding",6.38,6.35,6.32,6.72,6.78,6.59]
["TC1200001853.rn.1",6.18,4.91,2.412,"up",0.000638710089124348,0.00287638238028649,"Chek2","checkpoint kinase 2","chr12","-","NM_053677","coding",51845574,51878076,210,"12q16",114212,"NM_053677","RefSeq","Rattus norvegicus checkpoint kinase 2 (Chek2), mRNA.","chr12",100,100,"NM_053677","Q9R019","NM_053677","Rn.163213","heart| prostate| fetus| adult","NM_053677","GO:0000077","DNA damage checkpoint","inferred from mutant phenotype","NM_053677","GO:0000781","chromosome, telomeric region","inferred from electronic annotation","NM_053677","GO:0004672","protein kinase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000056800","Pfam","IPR000253","Forkhead-associated (FHA) domain","Coding",6.16,5.93,6.44,4.99,4.9,4.84]
["TC0300002512.rn.1",6.9,6.22,1.602,"up",0.000645542189054887,0.00289236867837824,"Npepl1","aminopeptidase-like 1","chr3","+","NM_001107806","coding",172195132,172207690,199,"3q42",311671,"NM_001107806","RefSeq","Rattus norvegicus aminopeptidase-like 1 (Npepl1), mRNA.","chr3",100,100,"NM_001107806","D4A3E2","NM_001107806","Rn.8518","adrenal gland| brain| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| juvenile| adult","NM_001107806","GO:0006508","proteolysis","inferred from electronic annotation","NM_001107806","GO:0005634","nucleus","not recorded","NM_001107806","GO:0004177","aminopeptidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000034915","Pfam","IPR000819","Peptidase M17, leucyl aminopeptidase, C-terminal","Coding",6.9,6.9,6.9,6.2,6.25,6.2]
["TC0600001937.rn.1",15.69,16.21,-1.434,"down",0.000665621358526073,0.00295263243589285,"LOC100909597","WW domain-containing adapter protein with coiled-coil-like","chr6","-","mRNARGD7598280_1","coding",17477782,17478690,30,null,"NA","mRNARGD7598280_1","Rat Genome Database","WW domain-containing adapter protein with coiled-coil-like","chr6",100,100,{"$nulls":24},"Coding",15.51,15.77,15.78,16.24,16.22,16.16]
["TC0700001325.rn.1",6.38,5.37,2.014,"up",0.000675892881718762,0.00297857560334312,"Gsdmd","gasdermin D","chr7","+","NM_001130553","coding",116889212,116894140,220,"7q34",315084,"NM_001130553","RefSeq","Rattus norvegicus gasdermin D (Gsdmd), mRNA.","chr7",100,100,"NM_001130553","D3ZK05","NM_001130553","Rn.105659","adipose tissue| brain| eye| ovary| prostate| small intestine| spleen| juvenile| adult","NM_001130553","GO:0031668","cellular response to extracellular stimulus","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000045475","Pfam","IPR007677","Gasdermin","Coding",6.35,6.32,6.48,5.44,5.31,5.37]
["TC0700003496.rn.1",8,8.51,-1.424,"down",0.000682500699127662,0.00299160223178062,"Tmem184b","transmembrane protein 184B","chr7","-","NM_001173370","coding",120592551,120636592,190,"7q34",362959,"NM_001173370","RefSeq","Rattus norvegicus transmembrane protein 184B (Tmem184b), mRNA.","chr7",100,100,"NM_001173370","G3V924","NM_001173370","Rn.23598","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| lung| ovary| pancreas| pineal gland| placenta| prostate| thymus| juvenile| adult",{"$nulls":15},"ENSRNOT00000031117","Pfam","IPR005178","Organic solute transporter subunit alpha/Transmembrane protein 184","Coding",7.82,8.01,8.16,8.52,8.56,8.46]
["TC0300005010.rn.1",7.52,8.4,-1.84,"down",0.000697306124250717,0.00303581571036572,"Cables2","Cdk5 and Abl enzyme substrate 2","chr3","-","ENSRNOT00000008279","coding",175630266,175644721,133,"3q43",311703,"ENSRNOT00000008279","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:181470268:181483108:1 gene:ENSRNOG00000036735 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000008279","F1LXV4","ENSRNOT00000008279","Rn.232954",null,"ENSRNOT00000008279","GO:0045859","regulation of protein kinase activity","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000008279","GO:0016538","cyclin-dependent protein serine/threonine kinase regulator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008279","Pfam","IPR006671","Cyclin, N-terminal","Coding",7.44,7.5,7.62,8.36,8.5,8.35]
["TC0800003086.rn.1",10.94,10.22,1.647,"up",0.000708116005635665,0.00306750202840328,"Syncrip","uncharacterized LOC100910033","chr8","-","mRNARGD6500337_1","coding",96197878,96204498,80,null,"NA","mRNARGD6500337_1","Rat Genome Database","uncharacterized LOC100910033","chr8",100,100,"ENSRNOT00000074515","M0R735",{"$nulls":22},"Coding",10.92,10.94,10.95,10.05,10.26,10.35]
["TC0400003371.rn.1",7.63,5.45,4.532,"up",0.000721835133211295,0.00310678842889331,"Adamts9","ADAM metallopeptidase with thrombospondin type 1 motif, 9","chr4","-","NM_001107877","coding",124660262,124858250,425,"4q34",312566,"NM_001107877","RefSeq","Rattus norvegicus ADAM metallopeptidase with thrombospondin type 1 motif, 9 (Adamts9), mRNA.","chr4",100,100,"NM_001107877","D3ZMB0","NM_001107877","Rn.162758","kidney| lung| muscle| placenta| prostate| metamorphosing embryo| juvenile","NM_001107877","GO:0006508","proteolysis","inferred from electronic annotation","NM_001107877","GO:0005578","proteinaceous extracellular matrix","inferred from electronic annotation","NM_001107877","GO:0004175","endopeptidase activity","not recorded",{"$nulls":3},"ENSRNOT00000057045","Pfam","IPR000884","Thrombospondin, type 1 repeat","Coding",7.48,7.92,7.48,5.59,5.53,5.24]
["TC0700003127.rn.1",9.54,10.15,-1.526,"down",0.000732384517841972,0.00313510385890411,"Ext1","exostosin glycosyltransferase 1","chr7","-","NM_001130540","coding",92605007,92882013,164,"7q31",299907,"NM_001130540","RefSeq","Rattus norvegicus exostosin glycosyltransferase 1 (Ext1), mRNA.","chr7",100,100,"NM_001130540","G3V901","NM_001130540","Rn.106323","connective tissue| embryonic tissue| eye| heart| lung| ovary| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa| metamorphosing embryo| juvenile| adult","NM_001130540","GO:0001503","ossification","inferred from electronic annotation","NM_001130540","GO:0005783","endoplasmic reticulum","not recorded","NM_001130540","GO:0008375","acetylglucosaminyltransferase activity","not recorded",{"$nulls":3},"ENSRNOT00000037809","Pfam","IPR004263","Exostosin-like","Coding",9.45,9.5,9.68,10.07,10.06,10.33]
["TC0200003764.rn.1",7.8,4.68,8.694,"up",0.00075106853386684,0.00318914971933534,"Igsf10","immunoglobulin superfamily, member 10","chr2","-","NM_198768","coding",149535080,149564148,120,"2q31",310448,"NM_198768","RefSeq","Rattus norvegicus immunoglobulin superfamily, member 10 (Igsf10), mRNA.","chr2",100,100,"NM_198768","Q6WRH9","NM_198768","Rn.205647","embryonic tissue| eye| lung| ovary| spleen| thymus| metamorphosing embryo| juvenile| adult","NM_198768","GO:0001503","ossification","inferred from direct assay","NM_198768","GO:0005576","extracellular region","inferred from electronic annotation","ENSRNOT00000018628","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018628","Pfam","IPR013098","Immunoglobulin I-set","Coding",7.75,7.75,7.9,4.75,4.7,4.58]
["TC1400001311.rn.1",7.94,9.38,-2.713,"down",0.000758480493427031,0.00320698616361834,"LOC100366030","rCG37858-like","chr14","-","ENSRNOT00000049165","coding",6192692,6201002,26,null,100363068,"ENSRNOT00000049165","ENSEMBL","ensembl:known chromosome:Rnor_5.0:14:6171817:6180127:-1 gene:ENSRNOG00000047293 gene_biotype:protein_coding transcript_biotype:protein_coding","chr14",100,100,"ENSRNOT00000049165","F1LX67","ENSRNOT00000049165","Rn.155367","ovary| pituitary gland","ENSRNOT00000049165","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000049165","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000049165","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000049165","Pfam","IPR001909","Krueppel-associated box","Coding",7.91,7.79,8.11,8.92,9.19,10.03]
["TC0300003680.rn.1",7.92,9.26,-2.532,"down",0.000775049840574318,0.00325081098245174,"Cry2","cryptochrome circadian clock 2","chr3","-","NM_133405","coding",81314151,81344606,195,"3q24",170917,"NM_133405","RefSeq","Rattus norvegicus cryptochrome circadian clock 2 (Cry2), mRNA.","chr3",100,100,"NM_133405","Q923I8","NM_133405","Rn.21150","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| pancreas| pituitary gland| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_133405","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_133405","GO:0005576","extracellular region","inferred from electronic annotation","NM_133405","GO:0000976","transcription regulatory region sequence-specific DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000010142","Pfam","IPR005101","DNA photolyase, FAD-binding/Cryptochrome, C-terminal","Coding",7.87,7.87,8.03,9.31,9.2,9.28]
["TC0100007508.rn.1",5.38,6.47,-2.129,"down",0.000788136921794403,0.00328436988564386,"ENSMUSG00000095556","N/A","chr1","-","MTA_TR1900004595.mm","coding",247016987,247034994,90,null,"NA","MTA_TR1900004595.mm","MTA2Rn6","N/A","chr1",100,100,{"$nulls":24},"Coding",5.54,5.14,5.45,6.33,6.73,6.36]
["TC0900001922.rn.1",8.11,5.86,4.757,"up",0.000795864075820979,0.00330363437081672,"Col5a2","collagen, type V, alpha 2","chr9","-","NM_053488","coding",52091088,52238737,612,"9q22",85250,"NM_053488","RefSeq","Rattus norvegicus collagen, type V, alpha 2 (Col5a2), mRNA.","chr9",100,100,"NM_053488","O70598","NM_053488","Rn.2875","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| muscle| ovary| pineal gland| pituitary gland| placenta| prostate| spleen| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_053488","GO:0001501","skeletal system development","inferred from electronic annotation","NM_053488","GO:0005581","collagen trimer","not recorded","NM_053488","GO:0005201","extracellular matrix structural constituent","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005073","Pfam","IPR000885","Fibrillar collagen, C-terminal","Coding",7.99,8.38,7.95,5.86,5.81,5.92]
["TC1000002490.rn.1",11.43,12.36,-1.905,"down",0.000808388043344517,0.00333167695553784,"Ergic1","endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1","chr10","-","ENSRNOT00000005273","coding",16821393,16911267,140,"10q12",287177,"ENSRNOT00000005273","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:16719603:16763481:-1 gene:ENSRNOG00000003508 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000005273","F1LU48",{"$nulls":3},"ENSRNOT00000005273","GO:0006888","ER to Golgi vesicle-mediated transport","inferred from electronic annotation","ENSRNOT00000005273","GO:0005793","endoplasmic reticulum-Golgi intermediate compartment","inferred from electronic annotation","ENSRNOT00000005273","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005273","Pfam","IPR012936","Endoplasmic reticulum vesicle transporter, C-terminal","Coding",11.36,11.17,11.76,12.46,12.54,12.07]
["TC0900000202.rn.1",8.94,9.51,-1.485,"down",0.000818951643715431,0.00335994544236673,"Ppp2r5d","protein phosphatase 2, regulatory subunit B, delta","chr9","+","ENSRNOT00000022862","coding",16325529,16610429,233,"9q12",363193,"ENSRNOT00000022862","ENSEMBL","ensembl:known chromosome:Rnor_5.0:9:15493418:15517044:1 gene:ENSRNOG00000016849 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000022862","F1MAA3","ENSRNOT00000022862","Rn.155910","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| metamorphosing embryo| juvenile| adult","ENSRNOT00000022862","GO:0007165","signal transduction","inferred from electronic annotation","ENSRNOT00000022862","GO:0000159","protein phosphatase type 2A complex","inferred from electronic annotation","ENSRNOT00000022862","GO:0008601","protein phosphatase type 2A regulator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022862","Pfam","IPR002554","Protein phosphatase 2A, regulatory B subunit, B56","Coding",8.87,8.95,8.99,9.44,9.48,9.62]
["TC1000000330.rn.1",8.44,7.49,1.932,"up",0.000825384771483804,0.00337597336130096,null,null,"chr10","+",null,"coding",18636485,18637285,30,null,"NA","ENSRNOT00000039882","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:18521436:18522236:1 gene:ENSRNOG00000029706 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000039882","D4A8X2",{"$nulls":3},"ENSRNOT00000039882","GO:0042254","ribosome biogenesis","inferred from electronic annotation","ENSRNOT00000039882","GO:0030529","ribonucleoprotein complex","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000039882","Pfam","IPR004038","Ribosomal protein L7Ae/L30e/S12e/Gadd45","Coding",8.48,8.57,8.26,7.44,7.46,7.57]
["TC0100003196.rn.1",7.03,8.41,-2.603,"down",0.000834786027749558,0.00340161109266657,"Syt7","synaptotagmin VII","chr1","+","NM_021659","coding",226435836,226498015,297,"1q43",59267,"NM_021659","RefSeq","Rattus norvegicus synaptotagmin VII (Syt7), mRNA.","chr1",100,100,"NM_021659","Q62747","NM_021659","Rn.91884","brain| pituitary gland| adult","NM_021659","GO:0001778","plasma membrane repair","inferred from electronic annotation","NM_021659","GO:0005764","lysosome","inferred from electronic annotation","NM_021659","GO:0005215","transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000035576","Pfam","IPR000008","C2 domain","Coding",7.12,7.05,6.93,8.37,8.39,8.46]
["TC0500002582.rn.1",8.71,9.59,-1.84,"down",0.000845777821371,0.00342790633108624,"Dctn3","dynactin 3","chr5","-","NM_001108659","coding",58098706,58106742,102,"5q22",362504,"NM_001108659","RefSeq","Rattus norvegicus dynactin 3 (Dctn3), mRNA.","chr5",100,100,"NM_001108659","D4A1B8","NM_001108659","Rn.2038","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| ovary| pancreas| small intestine| spleen| metamorphosing embryo| fetus| adult","NM_001108659","GO:0007017","microtubule-based process","inferred from electronic annotation","NM_001108659","GO:0005813","centrosome","inferred from electronic annotation","ENSRNOT00000019561","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019561","Pfam","IPR009991","Dynactin subunit p22","Coding",8.76,8.6,8.76,9.62,9.54,9.62]
["TC0600002034.rn.1",5.8,6.09,-1.223,"down",0.000869379995142667,0.00349125875818348,"Kcnk3","potassium channel, subfamily K, member 3","chr6","-","NM_033376","coding",27152544,27190241,78,"6q14",29553,"NM_033376","RefSeq","Rattus norvegicus potassium channel, subfamily K, member 3 (Kcnk3), mRNA.","chr6",100,100,"NM_033376","O54912","NM_033376","Rn.15536","adipose tissue| brain| embryonic tissue| heart| nerve| ovary| pancreas| adult","NM_033376","GO:0007420","brain development","inferred from expression pattern","NM_033376","GO:0005886","plasma membrane","inferred from direct assay","NM_033376","GO:0005216","ion channel activity","not recorded",{"$nulls":3},"ENSRNOT00000013107","Pfam","IPR013099","Two pore domain potassium channel domain","Coding",5.85,5.81,5.74,6.05,6.09,6.12]
["TC0400000182.rn.1",5.67,6.45,-1.717,"down",0.000880196155448072,0.00352058195171275,"bleewer","Unannotated AceView Transcript","chr4","+","bleewer.aSep08","coding",12471898,12499796,50,null,"NA","bleewer.aSep08","Ace View","Unannotated AceView Transcript","chr4",100,100,{"$nulls":24},"Coding",5.76,5.78,5.47,6.5,6.34,6.52]
["TC1000002693.rn.1",11.33,10.3,2.042,"up",0.00089611556480073,0.00355722657133306,"Sec24a","ENCODES a protein that exhibits zinc ion binding (inferred) AND  INVOLVED IN positive regulation of cholesterol homeostasis (ortholog) AND  positive regulation of protein secretion (ortholog) AND  regulation of low-density lipoprotein particle receptor biosynthetic process (ortholog) AND  PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway AND  FOUND IN COPII vesicle coat (inferred) AND  INTERACTS WITH 2 4-dinitrotoluene AND  2 6-dinitrotoluene AND  C60 fullerene","chr10","-","mRNARGD6565417_1","coding",35044850,35053621,40,null,"NA","mRNARGD6565417_1","Rat Genome Database","ENCODES a protein that exhibits zinc ion binding (inferred) AND  INVOLVED IN positive regulation of cholesterol homeostasis (ortholog) AND  positive regulation of protein secretion (ortholog) AND  regulation of low-density lipoprotein particle receptor biosynthetic process (ortholog) AND  PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway AND  FOUND IN COPII vesicle coat (inferred) AND  INTERACTS WITH 2 4-dinitrotoluene AND  2 6-dinitrotoluene AND  C60 fullerene","chr10",100,100,{"$nulls":24},"Coding",11.6,11.31,11.07,10.02,10.29,10.6]
["TC0300000287.rn.1",14.28,13.21,2.099,"up",0.000905448869165352,0.00358077135643376,"Hspa5","heat shock protein 5","chr3","+","NM_013083","coding",13837468,13842763,150,"3p11",25617,"NM_013083","RefSeq","Rattus norvegicus heat shock protein 5 (Hspa5), mRNA.","chr3",100,100,"NM_013083","P06761","NM_013083","Rn.11088","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_013083","GO:0006983","ER overload response","inferred from electronic annotation","NM_013083","GO:0005634","nucleus","not recorded","NM_013083","GO:0001948","glycoprotein binding","not recorded",{"$nulls":3},"ENSRNOT00000025067","Pfam","IPR004753","Cell shape determining protein MreB/Mrl","Coding",14.05,14.1,14.68,13.31,13.3,13.01]
["TC0200001366.rn.1",8.63,11.1,-5.54,"down",0.000920595064031167,0.00361556790804554,"Ppm1l","protein phosphatase, Mg2+/Mn2+ dependent, 1L","chr2","+","NM_001107681","coding",165932240,166218774,60,"2q32",310506,"NM_001107681","RefSeq","Rattus norvegicus protein phosphatase, Mg2+/Mn2+ dependent, 1L (Ppm1l), mRNA.","chr2",100,100,"NM_001107681","M0R5V1","NM_001107681","Rn.133275","brain| dorsal root ganglion| embryonic tissue| heart| liver| lung| nerve| ovary| pituitary gland| placenta| prostate| small intestine| metamorphosing embryo| juvenile| adult","NM_001107681","GO:0000165","MAPK cascade","inferred from electronic annotation","NM_001107681","GO:0005622","intracellular","not recorded","NM_001107681","GO:0004722","protein serine/threonine phosphatase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000074564","Pfam","IPR001932","Protein phosphatase 2C (PP2C)-like domain","Coding",8.75,8.44,8.71,10.87,11.3,11.14]
["TC1900000969.rn.1",5.07,5.43,-1.283,"down",0.000944725192165957,0.00368368604110322,"Setd6","SET domain containing 6","chr19","-","NM_001106167","coding",9758796,9765490,116,"19p13",291844,"NM_001106167","RefSeq","Rattus norvegicus SET domain containing 6 (Setd6), mRNA.","chr19",100,100,"NM_001106167","D3ZSK5","NM_001106167","Rn.18307","kidney| ovary| juvenile| adult","NM_001106167","GO:0018026","peptidyl-lysine monomethylation","not recorded","NM_001106167","GO:0005634","nucleus","not recorded","NM_001106167","GO:0016279","protein-lysine N-methyltransferase activity","not recorded",{"$nulls":3},"ENSRNOT00000016626","Pfam","IPR001214","SET domain","Coding",4.99,5.13,5.09,5.4,5.41,5.49]
["TC0400000155.rn.1",9.47,9.96,-1.404,"down",0.000957735510231008,0.00371357668487117,"Dnajc2","DnaJ (Hsp40) homolog, subfamily C, member 2","chr4","+","NM_053776","coding",9881508,9908693,212,"4q11",116456,"NM_053776","RefSeq","Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 2 (Dnajc2), mRNA.","chr4",100,100,"NM_053776","Q7TQ20","NM_053776","Rn.11908","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| muscle| ovary| pancreas| placenta| prostate| testis|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_053776","GO:0006260","DNA replication","inferred from electronic annotation","NM_053776","GO:0005634","nucleus","not recorded","NM_053776","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016909","Pfam","IPR001005","SANT/Myb domain","Coding",9.59,9.35,9.48,10.09,9.8,10]
["TC0700002511.rn.1",8.79,9.27,-1.395,"down",0.000969118983248833,0.00373935270058105,"Vezt","vezatin, adherens junctions transmembrane protein","chr7","-","NM_001006984","coding",34888487,34951689,197,"7q13",299738,"NM_001006984","RefSeq","Rattus norvegicus vezatin, adherens junctions transmembrane protein (Vezt), mRNA.","chr7",100,100,"NM_001006984","Q5XI52","NM_001006984","Rn.16786","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| liver| muscle| ovary| pineal gland| pituitary gland| prostate| testis| thymus| juvenile| adult","NM_001006984","GO:0016337","single organismal cell-cell adhesion","inferred from electronic annotation","NM_001006984","GO:0001669","acrosomal vesicle","inferred from electronic annotation","NM_001006984","GO:0017022","myosin binding","inferred from electronic annotation",{"$nulls":7},"Coding",8.77,8.84,8.77,9.32,9.25,9.25]
["TC1300001826.rn.1",10.61,11.89,-2.428,"down",0.000985838403935019,0.00377831214320466,"Dcaf6","DDB1 and CUL4 associated factor 6","chr13","-","Iqwd1.aSep08","coding",83578730,83680523,336,null,"NA","Iqwd1.aSep08","Ace View","DDB1 and CUL4 associated factor 6","chr13",100,100,"ENSRNOT00000004199","D4A8L4","ENSRNOT00000004199","Rn.232530","connective tissue| eye| prostate| adult","ENSRNOT00000004199","GO:0045944","positive regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","ENSRNOT00000004199","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000004199","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000004199","Pfam","IPR001680","WD40 repeat","Coding",10.58,10.67,10.57,11.83,11.95,11.89]
["TC1700000289.rn.1",8.04,7.66,1.301,"up",0.000999441149350255,0.00380813603978137,"Phf2","PHD finger protein 2","chr17","+","NM_001107342","coding",16242355,16274626,254,"17p14",306814,"NM_001107342","RefSeq","Rattus norvegicus PHD finger protein 2 (Phf2), mRNA.","chr17",100,100,"NM_001107342","F1LWX5","NM_001107342","Rn.166379","brain| colon| connective tissue| eye| heart| kidney| liver| lung| pancreas| pituitary gland| prostate| spleen| testis| thymus|tailbud embryo| juvenile| adult","NM_001107342","GO:0006482","protein demethylation","not recorded","NM_001107342","GO:0005634","nucleus","not recorded","NM_001107342","GO:0003713","transcription coactivator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022669","Pfam","IPR003347","JmjC domain","Coding",8.09,7.97,8.05,7.63,7.68,7.68]
["TC0600001633.rn.1",7.73,6.73,2,"up",0.00101578456639848,0.00384426878058998,"Siva1","SIVA1, apoptosis-inducing factor","chr6","+","NM_001100982","coding",137209754,137214379,100,"6q32",362791,"NM_001100982","RefSeq","Rattus norvegicus SIVA1, apoptosis-inducing factor (Siva1), mRNA.","chr6",100,100,"NM_001100982","P59692","NM_001100982","Rn.23843","connective tissue| pancreas| placenta| prostate| adult","NM_001100982","GO:0006924","activation-induced cell death of T cells","inferred from electronic annotation","NM_001100982","GO:0005654","nucleoplasm","inferred from electronic annotation","NM_001100982","GO:0001618","virus receptor activity","not recorded",{"$nulls":3},"ENSRNOT00000031788","Pfam","IPR022773","Siva","Coding",7.91,7.55,7.73,6.64,6.65,6.89]
["TSUnmapped00000010.rn.1",5.14,5.79,-1.569,"down",0.00102477870041469,0.00385980719967554,"Rcor2","REST corepressor 2",null,null,"NM_001013994","coding","NA","NA",30,null,305811,"NM_001013994","RefSeq","Rattus norvegicus REST corepressor 2 (Rcor2), mRNA.",null,100,100,"NM_001013994","Q5FWT8","NM_001013994","Rn.209048","brain| eye| ovary| pancreas| prostate| metamorphosing embryo| adult","NM_001013994","GO:0006351","transcription, DNA-templated","inferred from electronic annotation","NM_001013994","GO:0000785","chromatin","inferred from direct assay","NM_001013994","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":7},"Coding",5.01,5.13,5.29,5.97,5.87,5.52]
["TC0100005833.rn.1",9.09,9.98,-1.853,"down",0.00103804693018763,0.00388870244215858,"Mfge8","milk fat globule-EGF factor 8 protein","chr1","-","NM_001040186","coding",140845472,140860929,171,"1q31",25277,"NM_001040186","RefSeq","Rattus norvegicus milk fat globule-EGF factor 8 protein (Mfge8), transcript variant 1, mRNA.","chr1",100,100,"NM_001040186","P70490","NM_001040186","Rn.3742","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001040186","GO:0001525","angiogenesis","inferred from electronic annotation","NM_001040186","GO:0005576","extracellular region","inferred from electronic annotation","NM_001040186","GO:0001786","phosphatidylserine binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024253","Pfam","IPR000421","Coagulation factor 5/8 C-terminal type domain","Coding",8.92,9.08,9.27,10.23,10.07,9.64]
["TC0300001520.rn.1",10.38,10.87,-1.404,"down",0.00105297499295417,0.00392179000913527,"Rtf1","Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)","chr3","+","NM_001108958","coding",111478350,111537941,196,"3q35",366169,"NM_001108958","RefSeq","Rattus norvegicus Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) (Rtf1), mRNA.","chr3",100,100,"NM_001108958","D3ZLH8","NM_001108958","Rn.22569","adipose tissue| brain| connective tissue| embryonic tissue| eye| heart| kidney| liver| lung| muscle| pituitary gland| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001108958","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_001108958","GO:0005730","nucleolus","inferred from electronic annotation","NM_001108958","GO:0003697","single-stranded DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000056392","Pfam","IPR004343","Plus-3","Coding",10.46,10.33,10.34,10.74,10.86,11]
["TC0300000261.rn.1",3.67,4.4,-1.659,"down",0.00105465838402109,0.00392320909940492,"Pip5kl1","phosphatidylinositol-4-phosphate 5-kinase-like 1","chr3","+","ENSRNOT00000074122","coding",11591199,11597520,120,null,687758,"ENSRNOT00000074122","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:16944070:16946410:1 gene:ENSRNOG00000048676 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000074122","M0RBR8","ENSRNOT00000074122","Rn.217289","brain| adult","ENSRNOT00000074122","GO:0046854","phosphatidylinositol phosphorylation","inferred from electronic annotation","ENSRNOT00000074122","GO:0042995","cell projection","inferred from electronic annotation","ENSRNOT00000074122","GO:0016308","1-phosphatidylinositol-4-phosphate 5-kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000074122","Pfam","IPR002498","Phosphatidylinositol-4-phosphate 5-kinase, core","Coding",3.68,3.62,3.7,4.45,4.69,4.07]
["TC0700000938.rn.1",5.71,5.18,1.444,"up",0.00107097832461942,0.00396334990987728,"LOC681736","similar to Glycolipid transfer protein (GLTP)","chr7","+","mRNARGD6702047_1","coding",72696413,72699674,30,null,"NA","mRNARGD6702047_1","Rat Genome Database","similar to Glycolipid transfer protein (GLTP)","chr7",100,100,{"$nulls":24},"Coding",5.72,5.75,5.66,5.08,5.08,5.39]
["TC1700001284.rn.1",8.9,5.16,13.361,"up",0.00108930682803195,0.00400557766929361,"Tgfbi","transforming growth factor, beta induced","chr17","-","NM_053802","coding",8400122,8429352,177,"17p14",116487,"NM_053802","RefSeq","Rattus norvegicus transforming growth factor, beta induced (Tgfbi), mRNA.","chr17",100,100,"NM_053802","D4A8G5","NM_053802","Rn.1046","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| placenta| prostate| small intestine| spleen| thymus| vibrissa| metamorphosing embryo| juvenile| adult","NM_053802","GO:0001525","angiogenesis","inferred from electronic annotation","NM_053802","GO:0005578","proteinaceous extracellular matrix","not recorded","NM_053802","GO:0005518","collagen binding","not recorded",{"$nulls":3},"ENSRNOT00000016390","Pfam","IPR000782","FAS1 domain","Coding",9.11,8.73,8.85,5.1,5.38,5]
["TC1000000931.rn.1",8.6,9.42,-1.765,"down",0.00110227355893697,0.00403277042803161,"Zbtb4","zinc finger and BTB domain containing 4","chr10","+","ENSRNOT00000019687","coding",56367672,56388296,170,"10q24",287441,"ENSRNOT00000019687","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:56127304:56130811:1 gene:ENSRNOG00000014689 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000019687","D4A8X0",{"$nulls":3},"ENSRNOT00000019687","GO:0006974","cellular response to DNA damage stimulus","not recorded","ENSRNOT00000019687","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000019687","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019687","Pfam","IPR013069","BTB/POZ","Coding",8.65,8.49,8.65,9.29,9.57,9.39]
["TC1600001378.rn.1",6.73,7.16,-1.347,"down",0.0011151525699056,0.00406192394460687,"Map1s","microtubule-associated protein 1S","chr16","-","NM_001106070","coding",20268662,20278850,80,"16p14",290640,"NM_001106070","RefSeq","Rattus norvegicus microtubule-associated protein 1S (Map1s), mRNA.","chr16",100,100,"NM_001106070","P0C5W1","NM_001106070","Rn.38446","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| pancreas| prostate| thymus| metamorphosing embryo| adult","NM_001106070","GO:0000226","microtubule cytoskeleton organization","not recorded","NM_001106070","GO:0005634","nucleus","inferred from electronic annotation","NM_001106070","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":7},"Coding",6.7,6.77,6.73,7.2,7.23,7.06]
["TC0400002986.rn.1",6.65,7.25,-1.516,"down",0.00113649446464884,0.00410868775928724,"Fam13a","family with sequence similarity 13, member A","chr4","-","NM_001100862","coding",89183177,89281271,204,"4q24",362378,"NM_001100862","RefSeq","Rattus norvegicus family with sequence similarity 13, member A (Fam13a), mRNA.","chr4",100,100,"NM_001100862","D3ZA02","NM_001100862","Rn.47690","adipose tissue| colon| liver| ovary| pituitary gland| prostate| fetus| adult",{"$nulls":19},"Coding",6.68,6.59,6.68,7.31,7.41,7.03]
["TC0200003745.rn.1",14.21,15.52,-2.479,"down",0.00115393654412571,0.00414753397641376,"Pfn2","profilin 2 (Pfn2), mRNA","chr2","-","NM_030873_2","coding",148044717,148050464,50,null,"NA","NM_030873_2","RefSeq","profilin 2 (Pfn2), mRNA","chr2",100,100,"ENSRNOT00000064506","D3ZDU5","ENSRNOT00000064506","Rn.203100","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","ENSRNOT00000064506","GO:0010633","negative regulation of epithelial cell migration","not recorded","ENSRNOT00000064506","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000064506","GO:0000774","adenyl-nucleotide exchange factor activity","not recorded",{"$nulls":3},"ENSRNOT00000064506","Pfam","IPR005455","Profilin","Coding",14.25,14.24,14.14,15.37,15.64,15.56]
["TC0400003231.rn.1",5.84,6.83,-1.986,"down",0.00116537355737047,0.00417395960104792,"LOC102556148","ENCODES a protein that exhibits N-acetyltransferase activity (inferred) AND  INVOLVED IN metabolic process (inferred)","chr4","-","mRNARGD7567031_1","coding",117572665,117579192,90,null,"NA","mRNARGD7567031_1","Rat Genome Database","ENCODES a protein that exhibits N-acetyltransferase activity (inferred) AND  INVOLVED IN metabolic process (inferred)","chr4",100,100,"ENSRNOT00000075813","M0RDW3",{"$nulls":3},"ENSRNOT00000075813","GO:0008152","metabolic process","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000075813","GO:0008080","N-acetyltransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000075813","Pfam","IPR000182","GNAT domain","Coding",5.7,5.71,6.1,7.05,6.99,6.45]
["TC0900000055.rn.1",6.97,7.59,-1.537,"down",0.00119565733408605,0.00425522711542896,"Hnrnpdl","heterogeneous nuclear ribonucleoprotein D-like","chr9","+","ENSRNOT00000073462","coding",6475109,6476015,30,null,"NA","ENSRNOT00000073462","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:9:5521601:5522507:1 gene:ENSRNOG00000050131 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000073462","M0RAX7",{"$nulls":7},"ENSRNOT00000073462","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000073462","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073462","Pfam","IPR000504","RNA recognition motif domain","Coding",7.16,7,6.76,7.45,7.6,7.72]
["TC1700002241.rn.1",9.55,10.72,-2.25,"down",0.00121343257519096,0.00429754003593403,"Nmt2","N-myristoyltransferase 2","chr17","-","NM_207590","coding",78919258,78966388,200,"17q12.3",291318,"NM_207590","RefSeq","Rattus norvegicus N-myristoyltransferase 2 (Nmt2), mRNA.","chr17",100,100,"NM_207590","F1M110","NM_207590","Rn.162255","adipose tissue| brain| eye| heart| placenta| testis| thymus| juvenile| adult","NM_207590","GO:0006499","N-terminal protein myristoylation","traceable author statement","NM_207590","GO:0005737","cytoplasm","not recorded","NM_207590","GO:0004379","glycylpeptide N-tetradecanoyltransferase activity","traceable author statement",{"$nulls":3},"ENSRNOT00000030228","Pfam","IPR022676","Myristoyl-CoA:protein N-myristoyltransferase, N-terminal","Coding",9.38,9.6,9.67,10.42,10.82,10.91]
["TC1400000768.rn.1",5.69,4.43,2.395,"up",0.00122515184406686,0.00432211874152832,"Slc2a9","solute carrier family 2 (facilitated glucose transporter), member 9","chr14","+","NM_001191551","coding",77067552,77192702,190,"14q21",501925,"NM_001191551","RefSeq","Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 9 (Slc2a9), mRNA.","chr14",100,100,"NM_001191551","D4A237","NM_001191551","Rn.92551","connective tissue| liver| lung| ovary| placenta| prostate| thymus| adult","NM_001191551","GO:0015758","glucose transport","inferred from electronic annotation","NM_001191551","GO:0005635","nuclear envelope","inferred from electronic annotation","NM_001191551","GO:0005355","glucose transmembrane transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000042200","Pfam","IPR005828","General substrate transporter","Coding",5.83,5.43,5.81,4.46,4.42,4.42]
["TC1600001909.rn.1",10.91,9.33,2.99,"up",0.00125487217243356,0.00439217902626302,"Plat","plasminogen activator, tissue","chr16","-","NM_013151","coding",74098263,74122907,188,"16q12.5",25692,"NM_013151","RefSeq","Rattus norvegicus plasminogen activator, tissue (Plat), mRNA.","chr16",100,100,"NM_013151","P19637","NM_013151","Rn.107102","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_013151","GO:0001666","response to hypoxia","inferred from electronic annotation","NM_013151","GO:0005615","extracellular space","inferred from direct assay","NM_013151","GO:0004252","serine-type endopeptidase activity","inferred from electronic annotation","NM_013151","GenMAPP","Blood_Clotting_Cascade","ENSRNOT00000025763","Pfam","IPR000001","Kringle","Coding",10.79,11.14,10.79,9.24,9.52,9.22]
["TC0300000187.rn.1",6.22,6.94,-1.647,"down",0.00127147681481839,0.00442976810072408,"Coq4","coenzyme Q4","chr3","+","NM_001031662","coding",8348972,8359420,122,"3p12",366013,"NM_001031662","RefSeq","Rattus norvegicus coenzyme Q4 (Coq4), mRNA.","chr3",100,100,"NM_001031662","Q4FZU1","NM_001031662","Rn.162647","brain| connective tissue| eye| heart| ovary| placenta| adult","NM_001031662","GO:0006744","ubiquinone biosynthetic process","inferred from electronic annotation","NM_001031662","GO:0005739","mitochondrion","not recorded",{"$nulls":7},"ENSRNOT00000038602","Pfam","IPR007715","Ubiquinone biosynthesis protein Coq4","Coding",6.27,6.09,6.3,7.08,7.1,6.64]
["TC0X00001585.rn.1",6.89,7.74,-1.803,"down",0.00127662399608963,0.00443524708721459,"Shroom2","shroom family member 2","chrX","-","NM_001047893","coding",23478863,23649560,190,"Xq21",317435,"NM_001047893","RefSeq","Rattus norvegicus shroom family member 2 (Shroom2), mRNA.","chrX",100,100,"NM_001047893","Q7TP36","NM_001047893","Rn.16033","brain| colon| connective tissue| embryonic tissue| eye| kidney| liver| ovary| pancreas| prostate| metamorphosing embryo| fetus| juvenile| adult","NM_001047893","GO:0000902","cell morphogenesis","inferred from electronic annotation","NM_001047893","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001047893","GO:0003779","actin binding","not recorded",{"$nulls":3},"ENSRNOT00000050819","Pfam","IPR014799","Apx/shroom, ASD2","Coding",6.81,6.86,7.01,7.69,7.98,7.54]
["TC1000003688.rn.1",4.5,5.56,-2.085,"down",0.00130569058993654,0.00450022842019596,"LOC691153","hypothetical protein LOC691153","chr10","-","NM_001109627","coding",85572572,85574889,30,"10q31",691153,"NM_001109627","RefSeq","Rattus norvegicus hypothetical protein LOC691153 (LOC691153), mRNA.","chr10",100,100,"NM_001109627","M0RD31","NM_001109627","Rn.225322","brain| adult","NM_001109627","GO:0048663","neuron fate commitment","not recorded",{"$nulls":15},"Coding",4.61,4.56,4.33,5.72,5.74,5.21]
["TC0100002489.rn.1",5.85,6.32,-1.385,"down",0.00131999258469622,0.00454051310668476,"Lyrm1","LYR motif containing 1","chr1","+","NM_001276487","coding",189665407,189718536,146,"1q35",365361,"NM_001276487","RefSeq","Rattus norvegicus LYR motif containing 1 (Lyrm1), mRNA.","chr1",100,100,"NM_001276487","B2RYU8","NM_001276487","Rn.22356","brain| embryonic tissue| eye| heart| pituitary gland| metamorphosing embryo| adult",{"$nulls":4},"NM_001276487","GO:0005739","mitochondrion","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000033673","Pfam","IPR008011","Complex 1 LYR protein","Coding",5.87,5.89,5.79,6.43,6.33,6.19]
["TC1400001204.rn.1",7.53,9.14,-3.053,"down",0.00134446029413643,0.0046046174624298,"Gpr75","G protein-coupled receptor 75","chr14","+","NM_001109096","coding",115270612,115279003,40,"14q22",498434,"NM_001109096","RefSeq","Rattus norvegicus G protein-coupled receptor 75 (Gpr75), mRNA.","chr14",100,100,"NM_001109096","D3Z826","NM_001109096","Rn.140703","brain| eye| adult","NM_001109096","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001109096","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001109096","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000033437","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",7.62,7.6,7.37,9.05,9.33,9.03]
["TC0400000413.rn.1",4.26,4.9,-1.558,"down",0.00137848307480963,0.00468841401248619,"Cftr","cystic fibrosis transmembrane conductance regulator","chr4","+","NM_031506","coding",42693242,42860679,303,"4q21",24255,"NM_031506","RefSeq","Rattus norvegicus cystic fibrosis transmembrane conductance regulator (Cftr), mRNA.","chr4",100,100,"NM_031506","P34158","NM_031506","Rn.124539","colon| adult","NM_031506","GO:0006200","ATP catabolic process","inferred from electronic annotation","NM_031506","GO:0005622","intracellular","not recorded","NM_031506","GO:0005254","chloride channel activity","not recorded",{"$nulls":3},"ENSRNOT00000010981","Pfam","IPR001140","ABC transporter, transmembrane domain","Coding",4.34,4.19,4.26,4.86,5.17,4.67]
["TC1000002861.rn.1",7.91,6.26,3.138,"up",0.0013942525452003,0.00471289374638537,"Faxdc2","fatty acid hydroxylase domain containing 2","chr10","-","ENSRNOT00000036481","coding",43500359,43526366,237,"10q22",691221,"ENSRNOT00000036481","ENSEMBL","ensembl:known chromosome:Rnor_5.0:10:43298906:43308262:-1 gene:ENSRNOG00000027259 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000036481","F1M8Z0","ENSRNOT00000036481","Rn.55929","adipose tissue| dorsal root ganglion| heart| kidney| lung| ovary| pancreas| placenta| prostate| spleen| testis| juvenile| adult","ENSRNOT00000036481","GO:0006633","fatty acid biosynthetic process","inferred from electronic annotation","ENSRNOT00000036481","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000036481","GO:0005506","iron ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000036481","Pfam","IPR006694","Fatty acid hydroxylase","Coding",7.81,7.81,8.12,6.22,6.39,6.17]
["TC0900002127.rn.1",11.73,10.9,1.778,"up",0.00141255052678927,0.0047543916296951,"Idh1","isocitrate dehydrogenase 1 (NADP+), soluble","chr9","-","NM_031510","coding",71882102,71911693,170,"9q32",24479,"NM_031510","RefSeq","Rattus norvegicus isocitrate dehydrogenase 1 (NADP+), soluble (Idh1), mRNA.","chr9",100,100,"NM_031510","P41562","NM_031510","Rn.3561","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| nerve| ovary| pancreas| prostate| small intestine| testis| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_031510","GO:0006097","glyoxylate cycle","inferred from electronic annotation","NM_031510","GO:0005737","cytoplasm","not recorded","NM_031510","GO:0000287","magnesium ion binding","not recorded",{"$nulls":3},"ENSRNOT00000020322","Pfam","IPR024084","Isopropylmalate dehydrogenase-like domain","Coding",11.82,11.72,11.64,11.02,10.98,10.69]
["TC1400001573.rn.1",7.34,4.84,5.657,"up",0.00143712415653755,0.00480636960400727,"Stap1","signal transducing adaptor family member 1","chr14","-","NM_001025115","coding",23575895,23604989,120,"14p21",305269,"NM_001025115","RefSeq","Rattus norvegicus signal transducing adaptor family member 1 (Stap1), mRNA.","chr14",100,100,"NM_001025115","Q5BK11","NM_001025115","Rn.205047","lung| placenta| spleen| thymus| juvenile| adult","NM_001025115","GO:0007169","transmembrane receptor protein tyrosine kinase signaling pathway","inferred from electronic annotation","NM_001025115","GO:0005634","nucleus","inferred from electronic annotation","NM_001025115","GO:0005070","SH3/SH2 adaptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002760","Pfam","IPR001849","Pleckstrin homology domain","Coding",7.89,7.16,6.96,4.75,4.98,4.78]
["TC1700000761.rn.1",5.52,5.88,-1.283,"down",0.00146217226709345,0.00486622049548398,"Hax1","HCLS1 associated protein X-1","chr17","+","Hs1bp1.aSep08-unspliced","coding",52953978,52955109,34,null,"NA","Hs1bp1.aSep08-unspliced","Ace View","HCLS1 associated protein X-1","chr17",100,100,"ENSRNOT00000020387","F1M366",{"$nulls":22},"Coding",5.57,5.49,5.5,5.84,5.89,5.9]
["TC1000003670.rn.1",7.85,8.9,-2.071,"down",0.00148642049625019,0.00491914849311527,"LOC102552549","ENCODES a protein that exhibits selenium binding (inferred) AND  INVOLVED IN cell redox homeostasis (inferred) AND  INTERACTS WITH cyclosporin A (ortholog) AND  hydrogen peroxide (ortholog) AND  valproic acid (ortholog)","chr10","-","mRNARGD7553402_1","coding",84846256,84847853,60,null,"NA","mRNARGD7553402_1","Rat Genome Database","ENCODES a protein that exhibits selenium binding (inferred) AND  INVOLVED IN cell redox homeostasis (inferred) AND  INTERACTS WITH cyclosporin A (ortholog) AND  hydrogen peroxide (ortholog) AND  valproic acid (ortholog)","chr10",100,100,"ENSRNOT00000071495","M0RCG2",{"$nulls":3},"ENSRNOT00000071495","GO:0045454","cell redox homeostasis","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000071495","GO:0008430","selenium binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000071495","Pfam","IPR011893","Selenoprotein, Rdx type","Coding",7.78,7.8,7.97,9.14,8.99,8.57]
["TC0400000525.rn.1",6.26,7.39,-2.189,"down",0.00151347530382122,0.00497739104556577,"Tspan33","tetraspanin 33","chr4","+","NM_001109227","coding",56981283,57004795,110,"4q22",500065,"NM_001109227","RefSeq","Rattus norvegicus tetraspanin 33 (Tspan33), mRNA.","chr4",100,100,"NM_001109227","D3Z967","NM_001109227","Rn.1696","brain| kidney| liver| nerve| placenta| juvenile| adult","NM_001109227","GO:0051604","protein maturation","not recorded","NM_001109227","GO:0005886","plasma membrane","not recorded","NM_001109227","GO:0019899","enzyme binding","not recorded",{"$nulls":3},"ENSRNOT00000010989","Pfam","IPR018499","Tetraspanin/Peripherin","Coding",6.24,6.19,6.34,7.41,7.55,7.2]
["TC0800000858.rn.1",6.66,7.65,-1.986,"down",0.00152901454795477,0.00500669400801552,"Larp6","La ribonucleoprotein domain family, member 6","chr8","+","NM_001108154","coding",65611570,65632706,30,"8q24",315731,"NM_001108154","RefSeq","Rattus norvegicus La ribonucleoprotein domain family, member 6 (Larp6), mRNA.","chr8",100,100,"NM_001108154","D3ZCR5","NM_001108154","Rn.33750","brain| connective tissue| adult","NM_001108154","GO:0006396","RNA processing","inferred from electronic annotation","NM_001108154","GO:0005634","nucleus","inferred from electronic annotation","NM_001108154","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017147","Pfam","IPR006630","RNA-binding protein Lupus La","Coding",6.71,6.48,6.79,7.86,7.74,7.35]
["TC0100003220.rn.1",6.42,4.55,3.655,"up",0.00154700859844989,0.00503807393394695,"Ms4a4a","membrane-spanning 4-domains subfamily A member 4A","chr1","+","mRNARGD2602510_1","coding",227574788,227606967,160,null,"NA","mRNARGD2602510_1","Rat Genome Database","membrane-spanning 4-domains subfamily A member 4A","chr1",100,100,"ENSRNOT00000072120","M0R5G6",{"$nulls":7},"ENSRNOT00000072120","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000072120","Pfam","IPR007237","CD20-like","Coding",6.91,6.5,5.84,4.76,4.44,4.46]
["TC0700001769.rn.1",3.42,4.01,-1.505,"down",0.0015720953753069,0.00509779144380365,"Ccdc184","coiled-coil domain containing 184","chr7","+","NM_001024909","coding",139760571,139764018,30,"7q36",500925,"NM_001024909","RefSeq","Rattus norvegicus coiled-coil domain containing 184 (Ccdc184), mRNA.","chr7",100,100,"NM_001024909","Q4V8F1","NM_001024909","Rn.162016","brain| testis| adult",{"$nulls":4},"NM_001024909","GO:0005737","cytoplasm","inferred from electronic annotation",{"$nulls":11},"Coding",3.44,3.49,3.33,4.17,4.02,3.83]
["TC1000001843.rn.1",5.66,6.22,-1.474,"down",0.00158961476193218,0.00512684701625026,"Axin2","axin 2","chr10","+","NM_024355","coding",97212481,97239625,120,"10q32.1",29134,"NM_024355","RefSeq","Rattus norvegicus axin 2 (Axin2), mRNA.","chr10",100,100,"NM_024355","O70240","NM_024355","Rn.162212","brain| eye| kidney| metamorphosing embryo| adult","NM_024355","GO:0001756","somitogenesis","not recorded","NM_024355","GO:0005634","nucleus","not recorded","NM_024355","GO:0004871","signal transducer activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000004898","Pfam","IPR000342","Regulator of G protein signalling domain","Coding",5.9,5.57,5.51,6.28,6.12,6.26]
["TC1000000705.rn.1",7.31,7.99,-1.602,"down",0.00160410007548564,0.00514942208348894,"RGD1561277","RGD1561277","chr10","+","LOC691468.aSep08","coding",45169391,45185463,95,null,"NA","LOC691468.aSep08","Ace View","RGD1561277","chr10",100,100,{"$nulls":24},"Coding",7.32,7.3,7.32,7.91,8.21,7.85]
["TC0900000535.rn.1",9,6.09,7.516,"up",0.00161533978110245,0.00517033443701365,"Il1r1","interleukin 1 receptor, type I","chr9","+","NM_013123","coding",46962315,47037988,210,"9q21",25663,"NM_013123","RefSeq","Rattus norvegicus interleukin 1 receptor, type I (Il1r1), mRNA.","chr9",100,100,"NM_013123","Q02955","NM_013123","Rn.9758","adipose tissue| brain| liver| pineal gland| pituitary gland| prostate| fetus| adult","NM_013123","GO:0009314","response to radiation","inferred from mutant phenotype","NM_013123","GO:0005615","extracellular space","inferred from direct assay","NM_013123","GO:0002020","protease binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019673","Pfam","IPR000157","Toll/interleukin-1 receptor homology (TIR) domain","Coding",8.71,9.4,8.88,6,6.06,6.2]
["TC0500002584.rn.1",8.12,8.64,-1.434,"down",0.00164948994861192,0.00524113588756862,"Sigmar1","sigma non-opioid intracellular receptor 1","chr5","-","NM_030996","coding",58121822,58124670,90,"5q22",29336,"NM_030996","RefSeq","Rattus norvegicus sigma non-opioid intracellular receptor 1 (Sigmar1), mRNA.","chr5",100,100,"NM_030996","Q9R0C9","NM_030996","Rn.1129","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pancreas| placenta| prostate| small intestine| spleen|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_030996","GO:0006869","lipid transport","inferred from electronic annotation","NM_030996","GO:0005635","nuclear envelope","not recorded","NM_030996","GO:0004872","receptor activity","not recorded",{"$nulls":3},"ENSRNOT00000019795","Pfam","IPR006716","ERG2/sigma1 receptor-like","Coding",8.11,8.07,8.19,8.57,8.87,8.47]
["TC1000001023.rn.1",8.45,6.88,2.969,"up",0.00166457066969669,0.00527073589196158,"Tax1bp3","Tax1 (human T-cell leukemia virus type I) binding protein 3","chr10","+","NM_001025419","coding",59743356,59749737,87,"10q24",360564,"NM_001025419","RefSeq","Rattus norvegicus Tax1 (human T-cell leukemia virus type I) binding protein 3 (Tax1bp3), mRNA.","chr10",100,100,"NM_001025419","Q4QQV1","NM_001025419","Rn.34842","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| nerve| ovary| pancreas| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001025419","GO:0007266","Rho protein signal transduction","not recorded","NM_001025419","GO:0005634","nucleus","inferred from electronic annotation","NM_001025419","GO:0008013","beta-catenin binding","inferred from electronic annotation",{"$nulls":7},"Coding",8.68,8.33,8.33,6.96,7.18,6.5]
["TC0600001119.rn.1",12.17,11.55,1.537,"up",0.00167299962229316,0.00528778683385271,"RGD1562469","ENCODES a protein that exhibits structural constituent of ribosome (inferred) AND  INVOLVED IN translation (inferred) AND  FOUND IN ribosome (inferred)","chr6","+","mRNARGD2420353_1","coding",105556488,105556969,30,null,"NA","mRNARGD2420353_1","Rat Genome Database","ENCODES a protein that exhibits structural constituent of ribosome (inferred) AND  INVOLVED IN translation (inferred) AND  FOUND IN ribosome (inferred)","chr6",100,100,{"$nulls":24},"Coding",12.31,12.04,12.17,11.67,11.69,11.28]
["TC1500000457.rn.1",10.67,9.69,1.972,"up",0.00170611717926247,0.00535446459276755,"Abhd4","abhydrolase domain containing 4","chr15","+","NM_001108866","coding",32887688,32907150,150,"15p13",364380,"NM_001108866","RefSeq","Rattus norvegicus abhydrolase domain containing 4 (Abhd4), mRNA.","chr15",100,100,"NM_001108866","D3ZAW4","NM_001108866","Rn.1831","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| heart| liver| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_001108866","GO:0008152","metabolic process","inferred from electronic annotation",{"$nulls":4},"NM_001108866","GO:0016787","hydrolase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012837","Pfam","IPR000073","Alpha/beta hydrolase fold-1","Coding",10.65,10.44,10.92,9.93,9.85,9.29]
["TC0700002176.rn.1",6.06,6.43,-1.292,"down",0.00174285591875215,0.00541637481804979,"Atp5d","ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit","chr7","-","NM_139106","coding",12426804,12433541,125,"7q11",245965,"NM_139106","RefSeq","Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit (Atp5d), mRNA.","chr7",100,100,"NM_139106","P35434","NM_139106","Rn.3879","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| fetus| adult","NM_139106","GO:0006172","ADP biosynthetic process","inferred from direct assay","NM_139106","GO:0000275","mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)","inferred from direct assay","NM_139106","GO:0016887","ATPase activity","inferred from mutant phenotype","NM_139106","GenMAPP","Electron_Transport_Chain","ENSRNOT00000020670","Pfam","IPR020546","ATPase, F1 complex, delta/epsilon subunit, N-terminal","Coding",6.1,6.1,5.97,6.34,6.52,6.43]
["TC0100007954.rn.1",8.25,9.51,-2.395,"down",0.00175363478913717,0.00543389046059611,"Ablim1","actin-binding LIM protein 1","chr1","-","ENSRNOT00000018693","coding",277853877,278042240,325,"1q55",307989,"ENSRNOT00000018693","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:285260913:285379156:-1 gene:ENSRNOG00000013687 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000018693","F1LWK7","ENSRNOT00000018693","Rn.40404","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| pancreas| pituitary gland| placenta| prostate| spleen| thymus| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000018693","GO:0007411","axon guidance","not recorded","ENSRNOT00000018693","GO:0015629","actin cytoskeleton","not recorded","ENSRNOT00000018693","GO:0003779","actin binding","not recorded",{"$nulls":3},"ENSRNOT00000018693","Pfam","IPR001781","Zinc finger, LIM-type","Coding",8.16,8.26,8.32,9.31,9.56,9.67]
["TC0600002080.rn.1",11.35,10.79,1.474,"up",0.00177221362467142,0.00546513809234284,"Itsn2","intersectin 2","chr6","-","ENSRNOT00000073870","coding",30098378,30187342,419,"6q12",313934,"ENSRNOT00000073870","ENSEMBL","ensembl:known chromosome:Rnor_5.0:6:39701691:39789879:1 gene:ENSRNOG00000046741 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000073870","M0RAL8","ENSRNOT00000073870","Rn.232602","adult","ENSRNOT00000073870","GO:0006897","endocytosis","inferred from electronic annotation","ENSRNOT00000073870","GO:0070062","extracellular vesicular exosome","not recorded","ENSRNOT00000073870","GO:0005089","Rho guanyl-nucleotide exchange factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073870","Pfam","IPR000008","C2 domain","Coding",11.33,11.29,11.43,10.65,10.75,10.96]
["TC1300000317.rn.1",10.43,10.8,-1.292,"down",0.00180389203528207,0.00552555255596629,"Kdm5b","lysine (K)-specific demethylase 5B","chr13","+","NM_001107177","coding",51384396,51455384,282,"13q13",304809,"NM_001107177","RefSeq","Rattus norvegicus lysine (K)-specific demethylase 5B (Kdm5b), mRNA.","chr13",100,100,"NM_001107177","D3ZUT4","NM_001107177","Rn.22866","brain| colon| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| nerve| ovary| pineal gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001107177","GO:0034720","histone H3-K4 demethylation","not recorded","NM_001107177","GO:0005730","nucleolus","inferred from electronic annotation","NM_001107177","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":7},"Coding",10.42,10.49,10.38,10.68,10.8,10.91]
["TC1000000052.rn.1",9.5,8.46,2.056,"up",0.00181694820750583,0.00555086305180861,"Zc3h7a","zinc finger CCCH type containing 7 A","chr10","+","NM_001108262","coding",4535736,4575643,352,"10q11",360466,"NM_001108262","RefSeq","Rattus norvegicus zinc finger CCCH type containing 7 A (Zc3h7a), mRNA.","chr10",100,100,"NM_001108262","D3ZP12","NM_001108262","Rn.15835","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult",{"$nulls":8},"NM_001108262","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":7},"Coding",9.41,9.43,9.66,8.35,8.51,8.52]
["TC0100005681.rn.1",6.49,8.1,-3.053,"down",0.00184387719725507,0.00560356731867002,"Fam189a1","family with sequence similarity 189, member A1","chr1","-","ENSRNOT00000031488","coding",125550414,125968491,143,"1q22",680344,"ENSRNOT00000031488","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:1:126661515:127069249:-1 gene:ENSRNOG00000023496 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000031488","F1LTM7",{"$nulls":7},"ENSRNOT00000031488","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000031488","Pfam","IPR007237","CD20-like","Coding",6.39,6.47,6.6,8.24,8.08,7.97]
["TC0900001188.rn.1",6.3,6.88,-1.495,"down",0.00188372832363493,0.00568983563030123,"Atg4b","autophagy related 4B, cysteine peptidase","chr9","+","NM_001025711","coding",100888473,100920122,171,"9q36",316640,"NM_001025711","RefSeq","Rattus norvegicus autophagy related 4B, cysteine peptidase (Atg4b), mRNA.","chr9",100,100,"NM_001025711","Q4KM36","NM_001025711","Rn.163086","adipose tissue| brain| connective tissue| embryonic tissue| eye| heart| kidney| liver| spleen| thymus| metamorphosing embryo| juvenile| adult","NM_001025711","GO:0000045","autophagic vacuole assembly","not recorded","NM_001025711","GO:0005737","cytoplasm","not recorded","NM_001025711","GO:0004175","endopeptidase activity","not recorded",{"$nulls":3},"ENSRNOT00000025529","Pfam","IPR005078","Peptidase C54","Coding",6.34,6.09,6.46,6.95,6.99,6.69]
["TC0600002409.rn.1",7.75,9.15,-2.639,"down",0.00189837206618359,0.00571617631507629,"Nova1","neuro-oncological ventral antigen 1","chr6","-","NM_001100541","coding",66960126,67085857,160,"6q21",298992,"NM_001100541","RefSeq","Rattus norvegicus neuro-oncological ventral antigen 1 (Nova1), mRNA.","chr6",100,100,"NM_001100541","Q80WA4","NM_001100541","Rn.206187","brain| colon| pancreas| fetus| juvenile| adult","NM_001100541","GO:0000398","mRNA splicing, via spliceosome","inferred from electronic annotation","NM_001100541","GO:0005634","nucleus","inferred from electronic annotation","NM_001100541","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000050372","Pfam","IPR004088","K Homology domain, type 1","Coding",7.79,7.78,7.67,8.88,9.28,9.29]
["TC1200001477.rn.1",6.51,8.11,-3.031,"down",0.00193321938966078,0.00578600172601609,"Glt1d1","glycosyltransferase 1 domain containing 1","chr12","-","ENSRNOT00000001275","coding",32666649,32740918,174,"12q14",304445,"ENSRNOT00000001275","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:34618168:34647621:-1 gene:ENSRNOG00000000961 gene_biotype:protein_coding transcript_biotype:protein_coding","chr12",100,100,"ENSRNOT00000001275","D3ZRH0",{"$nulls":3},"ENSRNOT00000001275","GO:0009058","biosynthetic process","inferred from electronic annotation","ENSRNOT00000001275","GO:0005737","cytoplasm","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000064526","Pfam","IPR001296","Glycosyl transferase, family 1","Coding",6.62,6.62,6.28,7.97,8.31,8.05]
["TC1300000926.rn.1",12.56,12.1,1.376,"up",0.00195485247178968,0.00582965532831906,"Eif3e","eukaryotic translation initiation factor 3, subunit E","chr13","+","NM_001011990","coding",100129663,100162614,200,null,299872,"NM_001011990","RefSeq","Rattus norvegicus eukaryotic translation initiation factor 3, subunit E (Eif3e), mRNA.","chr13",100,100,"NM_001011990","Q641X8","NM_001011990","Rn.98547","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001011990","GO:0000184","nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","not recorded","NM_001011990","GO:0005634","nucleus","not recorded","NM_001011990","GO:0003743","translation initiation factor activity","not recorded",{"$nulls":3},"ENSRNOT00000038340","Pfam","IPR000717","Proteasome component (PCI) domain","Coding",12.59,12.46,12.62,12.18,12.19,11.94]
["TC0600001188.rn.1",7.39,7.89,-1.414,"down",0.00198218144174414,0.00588187165992562,"Eif2b2","eukaryotic translation initiation factor 2B, subunit 2 beta","chr6","+","NM_032058","coding",109044216,109051260,100,"6q31",84005,"NM_032058","RefSeq","Rattus norvegicus eukaryotic translation initiation factor 2B, subunit 2 beta (Eif2b2), mRNA.","chr6",100,100,"NM_032058","Q62818","NM_032058","Rn.5910","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| testis| thymus| vibrissa|tailbud embryo| juvenile| adult","NM_032058","GO:0001541","ovarian follicle development","inferred from electronic annotation","NM_032058","GO:0005737","cytoplasm","not recorded","NM_032058","GO:0003743","translation initiation factor activity","inferred from electronic annotation","NM_032058","GenMAPP","Translation_Factors","ENSRNOT00000008730","Pfam","IPR000649","Initiation factor 2B-related","Coding",7.43,7.2,7.53,7.95,7.95,7.76]
["TC2000000678.rn.1",9.22,9.83,-1.526,"down",0.00198681344761974,0.0058925962777194,null,null,"chr20","+",null,"coding",30900207,30900980,30,null,"NA","ENSRNOT00000035216","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:32691226:32691999:1 gene:ENSRNOG00000025046 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000035216","M0R7H7",{"$nulls":3},"ENSRNOT00000035216","GO:0055114","oxidation-reduction process","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000035216","GO:0016620","oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000035216","Pfam","IPR020828","Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain","Coding",9.28,9.28,9.1,9.75,10.11,9.62]
["TC1700001023.rn.1",6.25,6.7,-1.366,"down",0.00206824165050397,0.00607163108460133,"Suv39h2","suppressor of variegation 3-9 homolog 2 (Drosophila)","chr17","+","NM_001108883","coding",78762991,78782016,130,"17q12.3",364785,"NM_001108883","RefSeq","Rattus norvegicus suppressor of variegation 3-9 homolog 2 (Drosophila) (Suv39h2), mRNA.","chr17",100,100,"NM_001108883","D3ZIH5","NM_001108883","Rn.154750","connective tissue| embryonic tissue| kidney| spleen| metamorphosing embryo| adult","NM_001108883","GO:0006333","chromatin assembly or disassembly","inferred from electronic annotation","NM_001108883","GO:0000785","chromatin","not recorded","NM_001108883","GO:0003682","chromatin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000020924","Pfam","IPR001214","SET domain","Coding",6.12,6.33,6.3,6.73,6.63,6.73]
["TC0100004336.rn.1",6.77,7.4,-1.548,"down",0.00206980791744303,0.006073417792889,"LOC102549642","uncharacterized LOC102549642","chr1","-","mRNARGD7743708_1","coding",37834960,37840322,40,null,"NA","mRNARGD7743708_1","Rat Genome Database","uncharacterized LOC102549642","chr1",100,100,{"$nulls":24},"Coding",6.65,6.87,6.79,7.36,7.43,7.42]
["TC0700001624.rn.1",7.15,6.21,1.919,"up",0.00209856773809651,0.00612470097084585,"Creld2","cysteine-rich with EGF-like domains 2","chr7","+","NM_001037208","coding",129812577,129819641,130,"7q34",362978,"NM_001037208","RefSeq","Rattus norvegicus cysteine-rich with EGF-like domains 2 (Creld2), mRNA.","chr7",100,100,"NM_001037208","Q4G063","NM_001037208","Rn.19198","adipose tissue| adrenal gland| brain| dorsal root ganglion| eye| liver| lung| pancreas| pituitary gland| placenta| prostate| juvenile| adult",{"$nulls":4},"NM_001037208","GO:0005615","extracellular space","inferred from electronic annotation","NM_001037208","GO:0005509","calcium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000006357","Pfam","IPR001881","EGF-like calcium-binding domain","Coding",6.99,6.84,7.61,6.39,6.23,6.02]
["TC0400004161.rn.1",8.49,9.03,-1.454,"down",0.00212050887533002,0.00615868807962082,"Rbsn","zinc finger, FYVE domain containing 20","chr4","-","NM_001107875","coding",124052300,124080962,152,"4q34",312562,"NM_001107875","RefSeq","Rattus norvegicus zinc finger, FYVE domain containing 20 (Zfyve20), mRNA.","chr4",100,100,"NM_001107875","D3ZL11","NM_001107875","Rn.172475","adrenal gland| brain| connective tissue| dorsal root ganglion| kidney| lung| ovary| pituitary gland| prostate| testis| metamorphosing embryo| adult",{"$nulls":4},"NM_001107875","GO:0043231","intracellular membrane-bounded organelle","inferred from electronic annotation","NM_001107875","GO:0017137","Rab GTPase binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000015602","Pfam","IPR000306","FYVE zinc finger","Coding",8.39,8.5,8.59,9.03,9.06,9.01]
["TC0600002634.rn.1",4.65,5.73,-2.114,"down",0.00214277967380626,0.00619188843902133,"Gpr135","G protein-coupled receptor 135","chr6","-","NM_181771","coding",94816743,94818933,30,"6q24",314213,"NM_181771","RefSeq","Rattus norvegicus G protein-coupled receptor 135 (Gpr135), mRNA.","chr6",100,100,"NM_181771","Q7TQN7","NM_181771","Rn.56673","heart","NM_181771","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_181771","GO:0005886","plasma membrane","inferred from electronic annotation","NM_181771","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005933","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",4.82,4.52,4.6,5.54,6.27,5.38]
["TC1000002393.rn.1",9.2,10.08,-1.84,"down",0.00216846763420022,0.00623134016107395,"Tsc2","tuberous sclerosis 2","chr10","-","NM_012680","coding",13961993,13996740,518,"10q12",24855,"NM_012680","RefSeq","Rattus norvegicus tuberous sclerosis 2 (Tsc2), mRNA.","chr10",100,100,"NM_012680","P49816","NM_012680","Rn.5875","adrenal gland| brain| connective tissue| dorsal root ganglion| heart| liver| lung| ovary| pancreas| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_012680","GO:0001666","response to hypoxia","inferred from electronic annotation","NM_012680","GO:0005622","intracellular","not recorded","NM_012680","GO:0005096","GTPase activator activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000016221","Pfam","IPR000331","Rap GTPase activating protein domain","Coding",9.16,9.05,9.4,10.17,10.02,10.06]
["TC0200004229.rn.1",9.63,9,1.548,"up",0.00218912361212497,0.0062653583676369,"Plekho1","pleckstrin homology domain containing, family O member 1","chr2","-","NM_001025119","coding",198112079,198120739,101,"2q34",310674,"NM_001025119","RefSeq","Rattus norvegicus pleckstrin homology domain containing, family O member 1 (Plekho1), mRNA.","chr2",100,100,"NM_001025119","Q5BJM5","NM_001025119","Rn.21037","adipose tissue| brain| connective tissue| embryonic tissue| heart| liver| lung| nerve| ovary| pancreas| placenta| prostate| spleen| testis|tailbud embryo| juvenile| adult",{"$nulls":4},"NM_001025119","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000028747","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000028747","Pfam","IPR001849","Pleckstrin homology domain","Coding",9.75,9.47,9.68,9.01,9,9]
["TC0700000242.rn.1",8.2,7.42,1.717,"up",0.00220202464210249,0.00628000483915283,"Plpp2","phosphatidic acid phosphatase type 2c","chr7","+","NM_139252","coding",13062194,13070281,90,"7q11",246115,"NM_139252","RefSeq","Rattus norvegicus phosphatidic acid phosphatase type 2c (Ppap2c), mRNA.","chr7",100,100,"NM_139252","Q8K593","NM_139252","Rn.3301","adipose tissue| adrenal gland| connective tissue| eye| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| spleen| thymus| fetus| juvenile| adult","NM_139252","GO:0016311","dephosphorylation","inferred from electronic annotation","NM_139252","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_139252","GO:0008195","phosphatidate phosphatase activity","non-traceable author statement",{"$nulls":3},"ENSRNOT00000000193","Pfam","IPR000326","Phosphatidic acid phosphatase type 2/haloperoxidase","Coding",8.11,8,8.49,7.56,7.49,7.21]
["TC0400004150.rn.1",8.78,9.07,-1.223,"down",0.00223844135875513,0.00634517967057336,"Galnt11",":polypeptide N-acetylgalactosaminyltransferase 11","chr4","-","NM_001271319","coding",6297255,6330765,246,"4q11",311952,"NM_001271319","RefSeq","Rattus norvegicus :polypeptide N-acetylgalactosaminyltransferase 11 (Galnt11), transcript variant 1, mRNA.","chr4",100,100,"NM_001271319","Q6P6V1","NM_001271319","Rn.211885","brain| dorsal root ganglion| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| testis| metamorphosing embryo| juvenile| adult","NM_001271319","GO:0007220","Notch receptor processing","inferred from sequence or structural similarity","NM_001271319","GO:0000139","Golgi membrane","inferred from electronic annotation","NM_001271319","GO:0004653","polypeptide N-acetylgalactosaminyltransferase activity","not recorded",{"$nulls":3},"ENSRNOT00000011814","Pfam","IPR000772","Ricin B lectin domain","Coding",8.8,8.77,8.78,9.01,9.06,9.13]
["TC1000004390.rn.1",6.86,5.65,2.313,"up",0.00227760464475462,0.00642068651152751,"Nde1","nudE neurodevelopment protein 1","chr10","-","NM_053347","coding",860513,904595,145,"10q11",83836,"NM_053347","RefSeq","Rattus norvegicus nudE neurodevelopment protein 1 (Nde1), mRNA.","chr10",100,100,"NM_053347","Q9ES39","NM_053347","Rn.20222","brain| colon| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_053347","GO:0000132","establishment of mitotic spindle orientation","inferred from electronic annotation","NM_053347","GO:0000776","kinetochore","not recorded","NM_053347","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000000029","Pfam","IPR006964","NUDE protein, C-terminal","Coding",7,6.71,6.88,5.7,5.86,5.39]
["TC1300001379.rn.1",9,9.54,-1.454,"down",0.00230129859612711,0.00646231133419399,"Rassf5","Ras association (RalGDS/AF-6) domain family member 5","chr13","-","NM_019365","coding",47956754,48022333,113,"13q13",54355,"NM_019365","RefSeq","Rattus norvegicus Ras association (RalGDS/AF-6) domain family member 5 (Rassf5), mRNA.","chr13",100,100,"NM_019365","O35141","NM_019365","Rn.36106","brain| lung| placenta| spleen| thymus| metamorphosing embryo| juvenile| adult","NM_019365","GO:0006915","apoptotic process","inferred from electronic annotation","NM_019365","GO:0005634","nucleus","inferred from electronic annotation","NM_019365","GO:0046872","metal ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008055","Pfam","IPR000159","Ras-association","Coding",8.95,8.86,9.2,9.41,9.57,9.63]
["TC1200000748.rn.1",5.65,6.82,-2.25,"down",0.00234889744250321,0.00655044107781719,"Srrm4","serine/arginine repetitive matrix 4","chr12","+","ENSRNOT00000001507","coding",45727112,45882551,124,"12q16",498189,"ENSRNOT00000001507","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:12:47542290:47695044:1 gene:ENSRNOG00000001141 gene_biotype:protein_coding transcript_biotype:protein_coding","chr12",100,100,"ENSRNOT00000001507","F1M2T7","ENSRNOT00000001507","Rn.210428","testis","ENSRNOT00000001507","GO:0000381","regulation of alternative mRNA splicing, via spliceosome","not recorded","ENSRNOT00000001507","GO:0005634","nucleus","not recorded","ENSRNOT00000001507","GO:0003729","mRNA binding","not recorded",{"$nulls":7},"Coding",5.69,5.69,5.57,6.84,6.9,6.73]
["TC0200001050.rn.1",8.58,9.03,-1.366,"down",0.00237440868276904,0.00658714131449067,"Larp1b","La ribonucleoprotein domain family, member 1B","chr2","+","NM_001014036","coding",127845034,127877149,132,"2q26",310348,"NM_001014036","RefSeq","Rattus norvegicus La ribonucleoprotein domain family, member 1B (Larp1b), mRNA.","chr2",100,100,"NM_001014036","Q66HE8","NM_001014036","Rn.7988","adipose tissue| adrenal gland| brain| eye| heart| kidney| liver| lung| muscle| nerve| ovary| placenta| prostate| small intestine| spleen| testis| juvenile| adult",{"$nulls":4},"NM_001014036","GO:0005634","nucleus","not recorded","NM_001014036","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":3},"ENSRNOT00000044804","Pfam","IPR006630","RNA-binding protein Lupus La","Coding",8.69,8.59,8.45,8.91,8.97,9.21]
["TC0500001121.rn.1",10.85,10.33,1.434,"up",0.00238970242710944,0.00661687587097347,"Usp24","ubiquitin specific peptidase 24","chr5","+","NM_001271206","coding",125896725,126030413,788,"5q34",313427,"NM_001271206","RefSeq","Rattus norvegicus ubiquitin specific peptidase 24 (Usp24), mRNA.","chr5",100,100,"NM_001271206","F1LSM0","NM_001271206","Rn.74199","adipose tissue| brain| colon| connective tissue| embryonic tissue| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| metamorphosing embryo| fetus| juvenile| adult","NM_001271206","GO:0006511","ubiquitin-dependent protein catabolic process","inferred from electronic annotation",{"$nulls":4},"NM_001271206","GO:0008234","cysteine-type peptidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000029228","Pfam","IPR001394","Peptidase C19, ubiquitin carboxyl-terminal hydrolase","Coding",10.76,10.8,10.98,10.19,10.34,10.47]
["TC0800003632.rn.1",8.12,9.02,-1.866,"down",0.00243566692724422,0.00668932335069713,"Lztfl1","leucine zipper transcription factor-like 1","chr8","-","NM_001024266","coding",132774393,132790949,191,"8q32",316102,"NM_001024266","RefSeq","Rattus norvegicus leucine zipper transcription factor-like 1 (Lztfl1), mRNA.","chr8",100,100,"NM_001024266","Q562C6","NM_001024266","Rn.25212","adipose tissue| brain| dorsal root ganglion| eye| heart| kidney| lung| ovary| pituitary gland| spleen| testis| juvenile| adult","NM_001024266","GO:0072594","establishment of protein localization to organelle","inferred from electronic annotation","NM_001024266","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001024266","GO:0042802","identical protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",8.15,8.16,8.06,9.05,9.11,8.91]
["TC0100000309.rn.1",7.02,5.59,2.694,"up",0.00245524298157158,0.00672623581481197,"Cenpw","centromere protein W","chr1","+","NM_001246319","coding",29915440,29920598,40,"1p11",689399,"NM_001246319","RefSeq","Rattus norvegicus centromere protein W (Cenpw), mRNA.","chr1",100,100,"NM_001246319","A1L1L1","NM_001246319","Rn.51","adrenal gland| connective tissue| heart| pancreas| testis| thymus| fetus| juvenile| adult","NM_001246319","GO:0000278","mitotic cell cycle","inferred from sequence or structural similarity","NM_001246319","GO:0000775","chromosome, centromeric region","inferred from sequence or structural similarity","NM_001246319","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":7},"Coding",7.39,6.83,6.83,5.6,5.18,5.99]
["TC1500000314.rn.1",5.99,5.03,1.945,"up",0.00250246185755371,0.00680783068344145,"Arhgef40","Rho guanine nucleotide exchange factor (GEF) 40","chr15","+","NM_001271313","coding",28377204,28403090,460,"15p14",361034,"NM_001271313","RefSeq","Rattus norvegicus Rho guanine nucleotide exchange factor (GEF) 40 (Arhgef40), mRNA.","chr15",100,100,"NM_001271313","F1LX30","NM_001271313","Rn.98243","adipose tissue| brain| connective tissue| dorsal root ganglion| heart| kidney| lung| ovary| pituitary gland| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001271313","GO:0032319","regulation of Rho GTPase activity","inferred from electronic annotation",{"$nulls":4},"NM_001271313","GO:0005089","Rho guanyl-nucleotide exchange factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000015331","Pfam","IPR000219","Dbl homology (DH) domain","Coding",5.9,5.91,6.15,5.08,4.92,5.09]
["TC0100004374.rn.1",5.36,4.6,1.693,"up",0.00250294730285527,0.00680783068344145,"Fbxo5","F-box protein 5","chr1","-","NM_001106206","coding",42461277,42467646,70,"1p11",292263,"NM_001106206","RefSeq","Rattus norvegicus F-box protein 5 (Fbxo5), mRNA.","chr1",100,100,"NM_001106206","B0BNA4","NM_001106206","Rn.81585","connective tissue| embryonic tissue| kidney| liver| pancreas| prostate| spleen| metamorphosing embryo| adult","NM_001106206","GO:0001556","oocyte maturation","inferred from electronic annotation","NM_001106206","GO:0005634","nucleus","inferred from electronic annotation","NM_001106206","GO:0008270","zinc ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000029416","Pfam","IPR001810","F-box domain","Coding",5.28,5.28,5.53,4.54,4.67,4.58]
["TC0X00000590.rn.1",5.7,6.06,-1.283,"down",0.00254409834051224,0.00687944151199224,"Eda","ectodysplasin-A","chrX","+","ENSRNOT00000004505","coding",69730134,70222693,110,"Xq31",302424,"ENSRNOT00000004505","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:71080496:71092240:1 gene:ENSRNOG00000032208 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000004505","F1M5D1","ENSRNOT00000004505","Rn.234600",null,"ENSRNOT00000004505","GO:0001942","hair follicle development","not recorded","ENSRNOT00000004505","GO:0005576","extracellular region","inferred from electronic annotation","ENSRNOT00000004505","GO:0005102","receptor binding","not recorded",{"$nulls":3},"ENSRNOT00000004505","Pfam","IPR006052","Tumour necrosis factor domain","Coding",5.66,5.72,5.72,6.06,6.2,5.92]
["TC0300002587.rn.1",7.08,7.37,-1.223,"down",0.00255711102200481,0.00689673931876459,"Arfgap1","ADP-ribosylation factor GTPase activating protein 1","chr3","+","NM_145090","coding",176475842,176491266,299,"3q43",246310,"NM_145090","RefSeq","Rattus norvegicus ADP-ribosylation factor GTPase activating protein 1 (Arfgap1), mRNA.","chr3",100,100,"NM_145090","Q62848","NM_145090","Rn.11219","adipose tissue| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| vibrissa| metamorphosing embryo| juvenile| adult","NM_145090","GO:0015031","protein transport","inferred from electronic annotation","NM_145090","GO:0000139","Golgi membrane","inferred from direct assay","NM_145090","GO:0005096","GTPase activator activity","not recorded",{"$nulls":3},"ENSRNOT00000013900","Pfam","IPR001164","Arf GTPase activating protein","Coding",6.99,7.08,7.16,7.4,7.44,7.28]
["TC0200001931.rn.1",5.23,5.92,-1.613,"down",0.0025827987098438,0.00693550724821404,"Fam212b","family with sequence similarity 212, member B","chr2","+","NM_001107713","coding",208170652,208185966,49,"2q34",310764,"NM_001107713","RefSeq","Rattus norvegicus family with sequence similarity 212, member B (Fam212b), mRNA.","chr2",100,100,"NM_001107713","D4ACF3","NM_001107713","Rn.168884","brain| connective tissue| dorsal root ganglion| lung| fetus| adult",{"$nulls":19},"Coding",5.26,5.01,5.41,6.02,5.78,5.95]
["TC0900002215.rn.1",10.34,8.63,3.272,"up",0.00262570547162918,0.00700524185957157,"Igfbp5","insulin-like growth factor binding protein 5","chr9","-","NM_012817","coding",80150090,80167038,70,"9q33",25285,"NM_012817","RefSeq","Rattus norvegicus insulin-like growth factor binding protein 5 (Igfbp5), mRNA.","chr9",100,100,"NM_012817","P24594","NM_012817","Rn.1593","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| muscle| ovary| pineal gland| pituitary gland| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_012817","GO:0001558","regulation of cell growth","inferred from electronic annotation","NM_012817","GO:0005576","extracellular region","inferred from electronic annotation","NM_012817","GO:0001968","fibronectin binding","inferred from electronic annotation","NM_012817","GenMAPP","Smooth_muscle_contraction","ENSRNOT00000023530","Pfam","IPR000716","Thyroglobulin type-1","Coding",10.01,9.81,11.2,8.92,8.86,8.11]
["TC0200003820.rn.1",15.2,14.71,1.404,"up",0.00266472431335301,0.0070843168116399,"LOC689398","similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)","chr2","-","LOC689398.aSep08-unspliced","coding",157896732,157897585,30,null,"NA","LOC689398.aSep08-unspliced","Ace View","similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)","chr2",100,100,{"$nulls":24},"Coding",15.39,15.23,14.97,14.64,14.74,14.74]
["TC1200000661.rn.1",5.98,5.25,1.659,"up",0.00270398736326087,0.00715475468198089,"Sh2b3","SH2B adaptor protein 3","chr12","+","NM_031621","coding",40244074,40265888,130,"12q16",58838,"NM_031621","RefSeq","Rattus norvegicus SH2B adaptor protein 3 (Sh2b3), mRNA.","chr12",100,100,"NM_031621","P50745","NM_031621","Rn.11228","brain| connective tissue| embryonic tissue| eye| heart| kidney| lung| muscle| ovary| pituitary gland| placenta| prostate| spleen| metamorphosing embryo| juvenile| adult","NM_031621","GO:0030097","hemopoiesis","not recorded","NM_031621","GO:0005622","intracellular","not recorded","NM_031621","GO:0032403","protein complex binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000030583","Pfam","IPR000980","SH2 domain","Coding",5.93,5.93,6.07,5.28,5.33,5.15]
["TC1200001266.rn.1",5.95,4.5,2.732,"up",0.00273226200005743,0.00720214312640328,"LOC685438","similar to paired immunoglobin-like type 2 receptor beta","chr12","-","ENSRNOT00000065873","coding",20270897,20276170,67,"12q12",685181,"ENSRNOT00000065873","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:22324668:22329937:-1 gene:ENSRNOG00000047079 gene_biotype:protein_coding transcript_biotype:protein_coding","chr12",100,100,"ENSRNOT00000065873","F7F3C7",{"$nulls":22},"Coding",6.28,6.23,5.33,4.35,4.55,4.61]
["TC0800001416.rn.1",5.23,4.3,1.905,"up",0.00276646009818354,0.00726143523202573,null,null,"chr8","+",null,"coding",111039662,111040065,30,null,"NA","ENSRNOT00000057689","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:110437895:110438298:1 gene:ENSRNOG00000037933 gene_biotype:protein_coding transcript_biotype:protein_coding","chr8",100,100,"ENSRNOT00000057689","D4A7I3",{"$nulls":3},"ENSRNOT00000057689","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000057689","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000057689","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000057689","Pfam","IPR001141","Ribosomal protein L27e","Coding",5.65,5.02,5.01,4.32,4.38,4.19]
["TC0400003492.rn.1",8.36,7.22,2.204,"up",0.00280419675068872,0.0073272716239792,"Sumf1","sulfatase modifying factor 1","chr4","-","NM_001108639","coding",140139013,140220482,90,"4q41",362409,"NM_001108639","RefSeq","Rattus norvegicus sulfatase modifying factor 1 (Sumf1), mRNA.","chr4",100,100,"NM_001108639","D4A7I8","NM_001108639","Rn.203214","adrenal gland| brain| connective tissue| liver| lung| muscle| placenta| prostate| spleen| adult","NM_001108639","GO:0008150","biological_process","no biological data available","NM_001108639","GO:0005783","endoplasmic reticulum","inferred from electronic annotation","NM_001108639","GO:0042803","protein homodimerization activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009008","Pfam","IPR005532","Formylglycine-generating sulphatase enzyme domain","Coding",8.45,8.01,8.62,7.37,7.22,7.08]
["TC2000001542.rn.1",9,8.2,1.741,"up",0.00284648925289912,0.00740043720332883,"Eif4ebp2","eukaryotic translation initiation factor 4E binding protein 2","chr20","-","NM_001033069","coding",31055782,31072416,40,"20q11",361845,"NM_001033069","RefSeq","Rattus norvegicus eukaryotic translation initiation factor 4E binding protein 2 (Eif4ebp2), mRNA.","chr20",100,100,"NM_001033069","Q497A9","NM_001033069","Rn.24129","adrenal gland| connective tissue| embryonic tissue| eye| heart| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001033069","GO:0006413","translational initiation","inferred from electronic annotation","NM_001033069","GO:0005622","intracellular","not recorded","NM_001033069","GO:0003743","translation initiation factor activity","inferred from electronic annotation",{"$nulls":7},"Coding",8.95,8.76,9.29,8.18,8.36,8.07]
["TC0200004206.rn.1",6.76,5.55,2.313,"up",0.00286637824092302,0.007430511330111,"Gabpb2","GA binding protein transcription factor, beta subunit 2","chr2","-","ENSRNOT00000028661","coding",196357030,196392360,108,"2q34",295263,"ENSRNOT00000028661","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:215855910:215874322:-1 gene:ENSRNOG00000021105 gene_biotype:protein_coding transcript_biotype:protein_coding","chr2",100,100,"ENSRNOT00000028661","D3ZSD3",{"$nulls":3},"ENSRNOT00000028661","GO:0045944","positive regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","ENSRNOT00000028661","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000028661","GO:0042803","protein homodimerization activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000028661","Pfam","IPR002110","Ankyrin repeat","Coding",6.83,6.65,6.8,5.45,5.72,5.48]
["TC0600002005.rn.1",7.99,8.44,-1.366,"down",0.00290998895765405,0.00750771100303112,"Zfp512","zinc finger protein 512","chr6","-","ENSRNOT00000006658","coding",26284483,26314833,196,"6q13",313906,"ENSRNOT00000006658","ENSEMBL","ensembl:known chromosome:Rnor_5.0:6:36109571:36137715:-1 gene:ENSRNOG00000039815 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000006658","D3ZIF0","ENSRNOT00000006658","Rn.22370","adipose tissue| brain| eye| kidney| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| metamorphosing embryo| juvenile| adult",{"$nulls":8},"ENSRNOT00000006658","GO:0046872","metal ion binding","inferred from electronic annotation",{"$nulls":7},"Coding",8.03,7.99,7.96,8.39,8.47,8.46]
["TC0100001024.rn.1",6.67,7.82,-2.219,"down",0.00294752716033377,0.00756267227168871,"Zfp180","zinc finger protein 180","chr1","+","NM_001271280","coding",80920702,80940038,110,"1q21",246279,"NM_001271280","RefSeq","Rattus norvegicus zinc finger protein 180 (Zfp180), transcript variant 2, mRNA.","chr1",100,100,"NM_001271280","Q62886","NM_001271280","Rn.14669","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| metamorphosing embryo| juvenile| adult",{"$nulls":8},"NM_001271280","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000026077","Pfam","IPR007087","Zinc finger, C2H2","Coding",6.73,6.58,6.69,7.66,7.93,7.86]
["TC0300004550.rn.1",5.98,7.44,-2.751,"down",0.00298645336378633,0.00762346530232657,"Ggt7","gamma-glutamyltransferase 7","chr3","-","NM_130423","coding",151006490,151033647,235,"3q42",156275,"NM_130423","RefSeq","Rattus norvegicus gamma-glutamyltransferase 7 (Ggt7), mRNA.","chr3",100,100,"NM_130423","Q99MZ4","NM_130423","Rn.15462","brain| connective tissue| dorsal root ganglion| pancreas| placenta| thymus| juvenile| adult","NM_130423","GO:0006508","proteolysis","inferred from electronic annotation","NM_130423","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_130423","GO:0003840","gamma-glutamyltransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025315","Pfam","IPR000101","Gamma-glutamyltranspeptidase","Coding",5.98,5.82,6.15,7.34,7.5,7.49]
["TC1300002275.rn.1",4.08,3.65,1.347,"up",0.00302188679850151,0.00767556595653893,"Cfhr1","complement factor H-related 1","chr13","-","NM_001044227","coding",56862417,56877674,60,"13q13",289057,"NM_001044227","RefSeq","Rattus norvegicus complement factor H-related 1 (Cfhr1), mRNA.","chr13",100,100,"NM_001044227","Q5I0M3","NM_001044227","Rn.203038","liver| pancreas| juvenile| adult",{"$nulls":4},"NM_001044227","GO:0070062","extracellular vesicular exosome","not recorded",{"$nulls":7},"ENSRNOT00000017195","Pfam","IPR000436","Sushi/SCR/CCP","Coding",4.16,4.15,3.94,3.63,3.49,3.82]
["TC1100000758.rn.1",8.43,10.14,-3.272,"down",0.0030253663070348,0.00768215730441478,"Fbxo45","F-box protein 45","chr11","+","ENSRNOT00000002391","coding",71796520,71811858,50,"11q22",288042,"ENSRNOT00000002391","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:11:74880642:74892625:1 gene:ENSRNOG00000001753 gene_biotype:protein_coding transcript_biotype:protein_coding","chr11",100,100,"ENSRNOT00000002391","F1M8Q1",{"$nulls":3},"ENSRNOT00000002391","GO:0001764","neuron migration","not recorded","ENSRNOT00000002391","GO:0014069","postsynaptic density","not recorded","ENSRNOT00000002391","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002391","Pfam","IPR003877","SPRY domain","Coding",8.35,8.29,8.65,9.98,10.26,10.17]
["TC0100001524.rn.1",5.99,8.1,-4.317,"down",0.00308840193381655,0.00778641697141055,"Kcnc1","potassium voltage gated channel, Shaw-related subfamily, member 1","chr1","+","NM_012856","coding",102414625,102456716,80,"1q22",25327,"NM_012856","RefSeq","Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 1 (Kcnc1), mRNA.","chr1",100,100,"NM_012856","P25122","NM_012856","Rn.33095","brain| dorsal root ganglion| juvenile| adult","NM_012856","GO:0034765","regulation of ion transmembrane transport","inferred from electronic annotation","NM_012856","GO:0008076","voltage-gated potassium channel complex","inferred from electronic annotation","NM_012856","GO:0005249","voltage-gated potassium channel activity","inferred from electronic annotation",{"$nulls":7},"Coding",6.22,5.74,6.01,7.96,8.38,7.96]
["TC0100007410.rn.1",8.24,7.34,1.866,"up",0.00310499180195631,0.00781240043334054,null,null,"chr1","-",null,"coding",239847789,239848355,30,null,"NA","ENSRNOT00000027014","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:247132141:247132707:-1 gene:ENSRNOG00000019952 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000027014","F1M302",{"$nulls":3},"ENSRNOT00000027014","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000027014","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000027014","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000027014","Pfam","IPR001063","Ribosomal protein L22/L17","Coding",8.11,8.57,8.04,7.28,7.23,7.51]
["TC1300001468.rn.1",10.01,9.42,1.505,"up",0.00314433341825509,0.00786694740148483,"Nav1","similar to neuron navigator 1","chr13","-","ENSRNOT00000011801","coding",52264077,52514930,513,"13q13",685707,"ENSRNOT00000011801","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:13:57316374:57463205:-1 gene:ENSRNOG00000008425 gene_biotype:protein_coding transcript_biotype:protein_coding","chr13",100,100,"ENSRNOT00000011801","F1M031","ENSRNOT00000011801","Rn.234185","pineal gland","ENSRNOT00000011801","GO:0001578","microtubule bundle formation","inferred from electronic annotation","ENSRNOT00000011801","GO:0015630","microtubule cytoskeleton","inferred from electronic annotation","ENSRNOT00000011801","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":7},"Coding",9.97,9.97,10.09,9.46,9.41,9.4]
["TC0200004034.rn.1",6.08,4.91,2.25,"up",0.00319451253341463,0.00794102421550451,"Pmf1","polyamine-modulated factor 1","chr2","-","NM_001191568","coding",187751779,187771974,100,"2q34",681050,"NM_001191568","RefSeq","Rattus norvegicus polyamine-modulated factor 1 (Pmf1), mRNA.","chr2",100,100,"NM_001191568","D3ZEH8","NM_001191568","Rn.15011","connective tissue| eye| heart| ovary| fetus| juvenile| adult","NM_001191568","GO:0007059","chromosome segregation","not recorded","NM_001191568","GO:0000444","MIS12/MIND type complex","not recorded","NM_001191568","GO:0003713","transcription coactivator activity","not recorded",{"$nulls":3},"ENSRNOT00000035383","Pfam","IPR007128","Nnf1","Coding",6.14,5.84,6.26,5.05,4.84,4.84]
["TC1500001032.rn.1",9.95,10.85,-1.866,"down",0.00321916960632496,0.00798061870008147,"Ndfip2","Nedd4 family interacting protein 2","chr15","+","NM_001108390","coding",89406866,89459706,160,"15q22",361089,"NM_001108390","RefSeq","Rattus norvegicus Nedd4 family interacting protein 2 (Ndfip2), mRNA.","chr15",100,100,"NM_001108390","F1M1W4","NM_001108390","Rn.105750","adrenal gland| brain| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| metamorphosing embryo| juvenile| adult","NM_001108390","GO:0007165","signal transduction","inferred from electronic annotation","NM_001108390","GO:0005737","cytoplasm","not recorded","NM_001108390","GO:0004871","signal transducer activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000039423","Pfam","IPR019325","NEDD4/BSD2","Coding",10,9.96,9.88,10.72,11.03,10.8]
["TC0900001320.rn.1",9.17,11.69,-5.736,"down",0.00326188371879574,0.00804860540897739,"Epb41l3","erythrocyte membrane protein band 4.1-like 3","chr9","+","NM_053927","coding",117314978,117666408,380,"9q38",116724,"NM_053927","RefSeq","Rattus norvegicus erythrocyte membrane protein band 4.1-like 3 (Epb41l3), mRNA.","chr9",100,100,"NM_053927","A3E0T0","NM_053927","Rn.19026","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| kidney| nerve| ovary| pituitary gland| prostate| spleen| testis| metamorphosing embryo| fetus| juvenile| adult","NM_053927","GO:0002175","protein localization to paranode region of axon","inferred from electronic annotation","NM_053927","GO:0005737","cytoplasm","inferred from electronic annotation","NM_053927","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022849","Pfam","IPR007477","SAB domain","Coding",9.36,9.07,9.08,11.48,11.84,11.76]
["TC0300002296.rn.1",6.07,4.63,2.713,"up",0.0033251354701893,0.00814451893015487,"Ube2c","ubiquitin-conjugating enzyme E2C","chr3","+","NM_001106542","coding",161236823,161239371,64,"3q42",296368,"NM_001106542","RefSeq","Rattus norvegicus ubiquitin-conjugating enzyme E2C (Ube2c), mRNA.","chr3",100,100,"NM_001106542","D3ZUW6","NM_001106542","Rn.3102","embryonic tissue| heart| liver| lung| pancreas| prostate| spleen| fetus| adult","NM_001106542","GO:0006511","ubiquitin-dependent protein catabolic process","not recorded","NM_001106542","GO:0005680","anaphase-promoting complex","inferred from electronic annotation","NM_001106542","GO:0004842","ubiquitin-protein transferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000020323","Pfam","IPR000608","Ubiquitin-conjugating enzyme, E2","Coding",6.14,5.69,6.37,4.82,4.43,4.65]
["TC0100001556.rn.1",9.74,10.08,-1.266,"down",0.00335089875582374,0.00818684420357443,"Prmt3","protein arginine methyltransferase 3","chr1","+","NM_053557","coding",105113550,105200259,180,"1q22",89820,"NM_053557","RefSeq","Rattus norvegicus protein arginine methyltransferase 3 (Prmt3), mRNA.","chr1",100,100,"NM_053557","O70467","NM_053557","Rn.33389","brain| colon| eye| lung| prostate| small intestine|tailbud embryo| metamorphosing embryo| adult","NM_053557","GO:0006355","regulation of transcription, DNA-templated","not recorded","NM_053557","GO:0005737","cytoplasm","inferred from direct assay","NM_053557","GO:0008168","methyltransferase activity","not recorded",{"$nulls":3},"ENSRNOT00000020853","Pfam","IPR003402","tRNA transferase Trm5/Tyw2","Coding",9.78,9.63,9.81,9.99,10.2,10.05]
["TC0500000511.rn.1",8.9,11.99,-8.515,"down",0.00342554354706544,0.00828877517148262,"Phf24","similar to mKIAA1045 protein","chr5","+","ENSRNOT00000000141","coding",58359755,58387446,160,"5q22",500446,"ENSRNOT00000000141","ENSEMBL","ensembl:known chromosome:Rnor_5.0:5:62902412:62910270:1 gene:ENSRNOG00000000129 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000000141","D3ZB78","ENSRNOT00000000141","Rn.169839","brain| dorsal root ganglion| eye| juvenile| adult",{"$nulls":8},"ENSRNOT00000000141","GO:0046872","metal ion binding","inferred from electronic annotation",{"$nulls":7},"Coding",8.97,8.79,8.95,11.89,12.08,11.99]
["TC0400003358.rn.1",8.96,9.51,-1.464,"down",0.00347141206586274,0.00837219775391888,"Prickle2","prickle homolog 2 (Drosophila)","chr4","-","NM_001107876","coding",124238167,124584045,110,"4q34",312563,"NM_001107876","RefSeq","Rattus norvegicus prickle homolog 2 (Drosophila) (Prickle2), mRNA.","chr4",100,100,"NM_001107876","F1M0J7","NM_001107876","Rn.85011","brain| dorsal root ganglion| lung| ovary| pineal gland| pituitary gland| placenta| prostate| metamorphosing embryo| juvenile| adult","NM_001107876","GO:0031175","neuron projection development","inferred from electronic annotation","NM_001107876","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001107876","GO:0008270","zinc ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016628","Pfam","IPR001781","Zinc finger, LIM-type","Coding",8.84,8.91,9.13,9.49,9.63,9.4]
["TC0500000524.rn.1",6.88,8.25,-2.585,"down",0.00350771741902739,0.00843007184365313,"Rusc2","RUN and SH3 domain containing 2","chr5","+","ENSRNOT00000072869","coding",58860447,58883152,140,null,684259,"ENSRNOT00000072869","ENSEMBL","ensembl:known chromosome:Rnor_5.0:5:63395643:63407290:1 gene:ENSRNOG00000045843 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000072869","M0RCV5","ENSRNOT00000072869","Rn.171801","brain| placenta| prostate| adult",{"$nulls":4},"ENSRNOT00000072869","GO:0031410","cytoplasmic vesicle","not recorded","ENSRNOT00000072869","GO:0017137","Rab GTPase binding","not recorded",{"$nulls":3},"ENSRNOT00000072869","Pfam","IPR004012","RUN","Coding",6.94,6.65,7.06,8.19,8.33,8.22]
["TC1100001587.rn.1",5.05,4.52,1.444,"up",0.00351689805388454,0.0084451252549113,"Cfap44","WD repeat domain 52","chr11","-","ENSRNOT00000059680","coding",61158780,61235922,390,"11q21",363782,"ENSRNOT00000059680","ENSEMBL","ensembl:known chromosome:Rnor_5.0:11:65270160:65342227:-1 gene:ENSRNOG00000028077 gene_biotype:protein_coding transcript_biotype:protein_coding","chr11",100,100,"ENSRNOT00000059680","D3ZXR2","ENSRNOT00000059680","Rn.136704","lung| spleen| testis| juvenile",{"$nulls":8},"ENSRNOT00000059680","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000059680","Pfam","IPR001680","WD40 repeat","Coding",5.19,4.93,5.03,4.4,4.54,4.61]
["TC1900001571.rn.1",9.79,9.36,1.347,"up",0.00357325525237384,0.00852389686747954,"Mbtps1","membrane-bound transcription factor peptidase, site 1","chr19","-","NM_053569","coding",52146504,52206837,353,"19q12",89842,"NM_053569","RefSeq","Rattus norvegicus membrane-bound transcription factor peptidase, site 1 (Mbtps1), mRNA.","chr19",100,100,"NM_053569","Q9WTZ3","NM_053569","Rn.2362","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| heart| kidney| liver| lung| ovary| pituitary gland| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_053569","GO:0006508","proteolysis","not recorded","NM_053569","GO:0000139","Golgi membrane","inferred from electronic annotation","NM_053569","GO:0004175","endopeptidase activity","not recorded",{"$nulls":3},"ENSRNOT00000020838","Pfam","IPR000209","Peptidase S8/S53 domain","Coding",9.81,9.74,9.81,9.3,9.37,9.4]
["TC1100001770.rn.1",16.08,16.55,-1.385,"down",0.00362086434084752,0.00858441851574482,"RGD1564688","similar to glyceraldehyde-3-phosphate dehydrogenase","chr11","-","ENSRNOT00000058917","coding",72108762,72109991,33,"11q22",498099,"ENSRNOT00000058917","ENSEMBL","ensembl:known chromosome:Rnor_5.0:11:75184001:75185230:-1 gene:ENSRNOG00000038610 gene_biotype:protein_coding transcript_biotype:protein_coding","chr11",100,100,"ENSRNOT00000058917","E9PTN6",{"$nulls":3},"ENSRNOT00000058917","GO:0006006","glucose metabolic process","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000058917","GO:0004365","glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000058917","Pfam","IPR020828","Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain","Coding",16.13,16.13,15.98,16.58,16.54,16.53]
["TC0X00001303.rn.1",9.64,10.03,-1.31,"down",0.00363221526582063,0.00859607784503681,"LOC100911260","host cell factor 1-like","chrX","+","mRNARGD6493785_1","coding",156759369,156771130,147,null,"NA","mRNARGD6493785_1","Rat Genome Database","host cell factor 1-like","chrX",100,100,{"$nulls":24},"Coding",9.54,9.55,9.84,10.03,10.07,9.98]
["TC1000000908.rn.1",6.83,7.46,-1.548,"down",0.00365153136284001,0.008617137794307,"Per1","period circadian clock 1","chr10","+","NM_001034125","coding",55681803,55696793,320,"10q24",287422,"NM_001034125","RefSeq","Rattus norvegicus period circadian clock 1 (Per1), mRNA.","chr10",100,100,"NM_001034125","Q8CHI5","NM_001034125","Rn.34433","connective tissue| eye| heart| kidney| liver| lung| ovary| pineal gland| pituitary gland| prostate| spleen| testis| juvenile| adult","NM_001034125","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","not recorded","NM_001034125","GO:0005634","nucleus","inferred from direct assay","NM_001034125","GO:0000978","RNA polymerase II core promoter proximal region sequence-specific DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000057136","Pfam","IPR013655","PAS fold-3","Coding",6.81,6.8,6.89,7.37,7.67,7.33]
["TC0400000740.rn.1",7.55,9.71,-4.469,"down",0.00370587316319947,0.00869693633044285,"Ephb6","Eph receptor B6","chr4","+","NM_001107857","coding",70903234,70921178,280,"4q22",312275,"NM_001107857","RefSeq","Rattus norvegicus Eph receptor B6 (Ephb6), mRNA.","chr4",100,100,"NM_001107857","P0C0K7","NM_001107857","Rn.125930","brain| dorsal root ganglion| pancreas| placenta| thymus| adult","NM_001107857","GO:0006468","protein phosphorylation","inferred from electronic annotation","NM_001107857","GO:0005623","cell","not recorded","NM_001107857","GO:0005003","ephrin receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019720","Pfam","IPR000719","Protein kinase domain","Coding",7.24,7.7,7.71,9.92,9.67,9.54]
["TC1000003999.rn.1",10.76,12.62,-3.63,"down",0.00375706413358453,0.00877348431144157,"Prkca","protein kinase C, alpha","chr10","-","NM_001105713","coding",96191133,96584947,198,"10q32.1",24680,"NM_001105713","RefSeq","Rattus norvegicus protein kinase C, alpha (Prkca), mRNA.","chr10",100,100,"NM_001105713","B5DFC4","NM_001105713","Rn.86669","brain| colon| connective tissue| dorsal root ganglion| eye| pineal gland| pituitary gland| prostate| small intestine| spleen| thymus| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_001105713","GO:0001750","photoreceptor outer segment","inferred from electronic annotation","NM_001105713","GO:0004672","protein kinase activity","not recorded",{"$nulls":3},"ENSRNOT00000004699","Pfam","IPR000008","C2 domain","Coding",10.72,10.73,10.83,12.56,12.75,12.55]
["TC1000001591.rn.1",7.39,9.33,-3.837,"down",0.00379736762649642,0.00883171415716553,"Rapgefl1","Unannotated AceView Transcript","chr10","+","darmer.aSep08","coding",86749233,86765678,201,null,"NA","darmer.aSep08","Ace View","Unannotated AceView Transcript","chr10",100,100,"ENSRNOT00000030425","F1LPE3",{"$nulls":3},"ENSRNOT00000030425","GO:0007264","small GTPase mediated signal transduction","inferred from electronic annotation","ENSRNOT00000030425","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000030425","GO:0005085","guanyl-nucleotide exchange factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000030425","Pfam","IPR001895","Ras guanine-nucleotide exchange factors catalytic domain","Coding",7.3,7.4,7.46,9.44,9.47,9.09]
["TC0500000298.rn.1",6.74,8.05,-2.479,"down",0.00383820990586313,0.00888862075386594,"Ttpa","tocopherol (alpha) transfer protein","chr5","+","NM_013048","coding",34007686,34029319,70,"5q21",25571,"NM_013048","RefSeq","Rattus norvegicus tocopherol (alpha) transfer protein (Ttpa), mRNA.","chr5",100,100,"NM_013048","P41034","NM_013048","Rn.228762","liver| juvenile","NM_013048","GO:0001890","placenta development","not recorded","NM_013048","GO:0005622","intracellular","not recorded","NM_013048","GO:0005215","transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009611","Pfam","IPR001251","CRAL-TRIO domain","Coding",6.72,6.73,6.77,8.09,8.35,7.7]
["TC0300003115.rn.1",10.01,9.26,1.682,"up",0.0038761950163708,0.00894184322229578,"Stam2","signal transducing adaptor molecule (SH3 domain and ITAM motif) 2","chr3","-","NM_001012085","coding",38228345,38278265,204,"3q12",311030,"NM_001012085","RefSeq","Rattus norvegicus signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 (Stam2), mRNA.","chr3",100,100,"NM_001012085","Q5XHY7","NM_001012085","Rn.161793","adipose tissue| colon| heart| placenta| prostate| testis|tailbud embryo| fetus| juvenile| adult","NM_001012085","GO:0006886","intracellular protein transport","inferred from electronic annotation","NM_001012085","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000037857","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000037857","Pfam","IPR001452","SH3 domain","Coding",10.1,9.89,10.05,9.11,9.29,9.37]
["TC1200000302.rn.1",7.89,9.66,-3.411,"down",0.00391980517889425,0.00899889463690674,"Adap1","ArfGAP with dual PH domains 1","chr12","+","NM_133567","coding",17416327,17468214,170,"12q11",171097,"NM_133567","RefSeq","Rattus norvegicus ArfGAP with dual PH domains 1 (Adap1), mRNA.","chr12",100,100,"NM_133567","O88768","NM_133567","Rn.10539","brain| dorsal root ganglion| eye| heart| lung| placenta| prostate| juvenile| adult","NM_133567","GO:0032312","regulation of ARF GTPase activity","inferred from electronic annotation","NM_133567","GO:0005634","nucleus","inferred from electronic annotation","NM_133567","GO:0005547","phosphatidylinositol-3,4,5-trisphosphate binding","inferred from direct assay",{"$nulls":3},"ENSRNOT00000001736","Pfam","IPR001164","Arf GTPase activating protein","Coding",7.97,7.57,8.14,9.57,9.82,9.58]
["TC0800002063.rn.1",6.24,5.53,1.636,"up",0.00396431086899997,0.00906941184056348,"Tyk2","tyrosine kinase 2","chr8","-","NM_001257347","coding",22124586,22149805,454,"8q13",100361294,"NM_001257347","RefSeq","Rattus norvegicus tyrosine kinase 2 (Tyk2), mRNA.","chr8",100,100,"NM_001257347","D3ZD03","NM_001257347","Rn.38688","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| placenta| prostate| metamorphosing embryo| juvenile| adult","NM_001257347","GO:0018108","peptidyl-tyrosine phosphorylation","inferred from electronic annotation","NM_001257347","GO:0005634","nucleus","inferred from electronic annotation","NM_001257347","GO:0004715","non-membrane spanning protein tyrosine kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000041678","Pfam","IPR000719","Protein kinase domain","Coding",6.14,6.14,6.44,5.46,5.58,5.55]
["TC1500000131.rn.1",8.24,10.37,-4.377,"down",0.00401073666985941,0.00913016513591363,"Fezf2","Fez family zinc finger 2","chr15","+","NM_001107251","coding",12825307,12831496,80,"15p16",305719,"NM_001107251","RefSeq","Rattus norvegicus Fez family zinc finger 2 (Fezf2), mRNA.","chr15",100,100,"NM_001107251","B4F7C0","NM_001107251","Rn.69050","brain| juvenile","NM_001107251","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation",{"$nulls":4},"NM_001107251","GO:0000978","RNA polymerase II core promoter proximal region sequence-specific DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012452","Pfam","IPR007087","Zinc finger, C2H2","Coding",8.15,8.29,8.29,10.44,10.31,10.37]
["TC0100006411.rn.1",6.23,7.01,-1.717,"down",0.00405901343341028,0.00920004206051278,"Galnt18","polypeptide N-acetylgalactosaminyltransferase 18","chr1","-","NM_001079884","coding",176296186,176607466,110,"1q33",293181,"NM_001079884","RefSeq","Rattus norvegicus polypeptide N-acetylgalactosaminyltransferase 18 (Galnt18), mRNA.","chr1",100,100,"NM_001079884","A1A5P1","NM_001079884","Rn.212131","adipose tissue| brain| colon| connective tissue| heart| kidney| lung| muscle| pituitary gland| prostate| spleen| testis|tailbud embryo| juvenile| adult","NM_001079884","GO:0006486","protein glycosylation","inferred from electronic annotation","NM_001079884","GO:0005794","Golgi apparatus","inferred from electronic annotation","NM_001079884","GO:0016757","transferase activity, transferring glycosyl groups","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022984","Pfam","IPR000772","Ricin B lectin domain","Coding",6.32,6.16,6.22,6.91,7.11,7.02]
["TC1200000968.rn.1",9.93,11.42,-2.809,"down",0.00410742949410951,0.00926384805792993,"Fry","furry homolog (Drosophila)","chr12","-","NM_001170398","coding",5456281,5822874,815,"12p12",304244,"NM_001170398","RefSeq","Rattus norvegicus furry homolog (Drosophila) (Fry), mRNA.","chr12",100,100,"NM_001170398","C0IXW5","NM_001170398","Rn.36184","adipose tissue| brain| connective tissue| heart| lung| ovary| pancreas| pineal gland| prostate| spleen|tailbud embryo| juvenile| adult",{"$nulls":19},"Coding",9.9,9.87,10.02,11.36,11.46,11.44]
["TC0900001401.rn.1",7.57,8,-1.347,"down",0.00414125209057356,0.00931015106409842,"LOC100912052","mRNA-decapping enzyme 2-like","chr9","-","mRNARGD7511216_1","coding",3916999,3931437,50,null,"NA","mRNARGD7511216_1","Rat Genome Database","mRNA-decapping enzyme 2-like","chr9",100,100,{"$nulls":24},"Coding",7.36,7.8,7.56,8.07,7.98,7.96]
["TC0300001506.rn.1",7.73,6.02,3.272,"up",0.00417822395835203,0.00936515204910105,"Spint1","serine peptidase inhibitor, Kunitz type 1","chr3","+","NM_001004265","coding",111049082,111061992,175,"3q35",311331,"NM_001004265","RefSeq","Rattus norvegicus serine peptidase inhibitor, Kunitz type 1 (Spint1), mRNA.","chr3",100,100,"NM_001004265","Q4V8Q2","NM_001004265","Rn.44189","adrenal gland| brain| embryonic tissue| eye| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| small intestine|tailbud embryo| metamorphosing embryo| adult","NM_001004265","GO:0001892","embryonic placenta development","not recorded","NM_001004265","GO:0005615","extracellular space","not recorded","NM_001004265","GO:0004867","serine-type endopeptidase inhibitor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017223","Pfam","IPR002172","Low-density lipoprotein (LDL) receptor class A repeat","Coding",7.19,7.19,8.8,6.05,6.02,5.99]
["TC1600001429.rn.1",6.27,5.63,1.558,"up",0.00424426997675603,0.00946265415209111,"Gmip","Gem-interacting protein","chr16","-","NM_001107308","coding",21349652,21363407,250,"16p14",306357,"NM_001107308","RefSeq","Rattus norvegicus Gem-interacting protein (Gmip), mRNA.","chr16",100,100,"NM_001107308","D3ZA46","NM_001107308","Rn.94138","adrenal gland| dorsal root ganglion| liver| lung| pancreas| prostate| spleen| juvenile| adult","NM_001107308","GO:0032321","positive regulation of Rho GTPase activity","inferred from electronic annotation","NM_001107308","GO:0005622","intracellular","inferred from electronic annotation","NM_001107308","GO:0005100","Rho GTPase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000039607","Pfam","IPR000198","Rho GTPase-activating protein domain","Coding",6.18,6.18,6.45,5.73,5.64,5.51]
["TC0800003694.rn.1",5.17,5.6,-1.347,"down",0.00429688351860537,0.00953515120103397,"Zcwpw2","zinc finger, CW type with PWWP domain 2","chr8","-","ENSRNOT00000055976","coding",126305855,126411585,179,"8q32",681381,"ENSRNOT00000055976","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:125620683:125632560:-1 gene:ENSRNOG00000037117 gene_biotype:protein_coding transcript_biotype:protein_coding","chr8",100,100,"ENSRNOT00000055976","F1M4Z4",{"$nulls":11},"ENSRNOT00000055976","GO:0008270","zinc ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000055976","Pfam","IPR011124","Zinc finger, CW-type","Coding",5.18,5.18,5.14,5.5,5.72,5.59]
["TC0200003978.rn.1",3.84,4.15,-1.24,"down",0.00431979779451757,0.00954860348139151,"Fam160a1","family with sequence similarity 160, member A1","chr2","-","NM_001134592","coding",184684851,184993350,101,"2q34",365834,"NM_001134592","RefSeq","Rattus norvegicus family with sequence similarity 160, member A1 (Fam160a1), mRNA.","chr2",100,100,"NM_001134592","M0R5L5","NM_001134592","Rn.220610","prostate| adult",{"$nulls":15},"ENSRNOT00000071580","Pfam","IPR019384","Retinoic acid induced 16-like protein","Coding",3.83,3.74,3.94,4.26,4.15,4.05]
["TC0200004037.rn.1",7.38,6.75,1.548,"up",0.00436546035742509,0.00957842767068729,"Sema4a","sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A","chr2","-","NM_001012078","coding",187799568,187823006,255,"2q34",310630,"NM_001012078","RefSeq","Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A (Sema4a), mRNA.","chr2",100,100,"NM_001012078","Q66HA9","NM_001012078","Rn.54039","adipose tissue| brain| colon| connective tissue| eye| kidney| lung| ovary| pancreas| pituitary gland| prostate| spleen|tailbud embryo| fetus| juvenile| adult","NM_001012078","GO:0002292","T cell differentiation involved in immune response","not recorded","NM_001012078","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001012078","GO:0004872","receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000056862","Pfam","IPR001627","Sema domain","Coding",7.32,7.18,7.64,6.78,6.7,6.77]
["TC0X00000555.rn.1",6.83,8.55,-3.294,"down",0.00442713259948426,0.00966912123511251,"Gpr165","G protein-coupled receptor 165","chrX","+","NM_001106582","coding",65796359,65802508,60,"Xq31",296866,"NM_001106582","RefSeq","Rattus norvegicus G protein-coupled receptor 165 (Gpr165), mRNA.","chrX",100,100,"NM_001106582","D4A9K0","NM_001106582","Rn.155959","brain| lung| juvenile| adult","NM_001106582","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001106582","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001106582","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000067298","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",6.81,6.68,7,8.52,8.69,8.44]
["TC0300003650.rn.1",6.54,5.49,2.071,"up",0.0045471860394284,0.00985681586644899,"Nr1h3","nuclear receptor subfamily 1, group H, member 3","chr3","-","NM_031627","coding",80004130,80014197,176,"3q24",58852,"NM_031627","RefSeq","Rattus norvegicus nuclear receptor subfamily 1, group H, member 3 (Nr1h3), mRNA.","chr3",100,100,"NM_031627","Q5I035","NM_031627","Rn.11209","brain| connective tissue| embryonic tissue| eye| kidney| liver| lung| ovary| placenta| small intestine| spleen| thymus| juvenile| adult","NM_031627","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_031627","GO:0000790","nuclear chromatin","inferred from electronic annotation","NM_031627","GO:0003677","DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000018154","Pfam","IPR000536","Nuclear hormone receptor, ligand-binding, core","Coding",6.77,6.42,6.42,5.38,5.5,5.58]
["TC0X00002535.rn.1",6.79,7.26,-1.385,"down",0.00457200726751109,0.00989128043518742,null,null,"chrX","-",null,"coding",144409121,144409999,30,null,"NA","ENSRNOT00000035090","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:144434332:144435210:-1 gene:ENSRNOG00000026308 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000035090","F1LU57",{"$nulls":3},"ENSRNOT00000035090","GO:0055085","transmembrane transport","inferred from electronic annotation","ENSRNOT00000035090","GO:0005741","mitochondrial outer membrane","inferred from electronic annotation","ENSRNOT00000035090","GO:0008308","voltage-gated anion channel activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000035090","Pfam","IPR027246","Eukaryotic porin/Tom40","Coding",6.88,6.64,6.84,7.45,7.04,7.28]
["TC0X00000414.rn.1",7.31,7.98,-1.591,"down",0.00465107060414789,0.0100029401342891,"LOC317456","hypothetical LOC317456","chrX","+","NM_001047894","coding",43881246,43882204,30,"Xq22",317456,"NM_001047894","RefSeq","Rattus norvegicus hypothetical LOC317456 (LOC317456), mRNA.","chrX",100,100,"NM_001047894","Q6TXI6","NM_001047894","Rn.50555","embryonic tissue| testis| metamorphosing embryo","NM_001047894","GO:0008152","metabolic process","inferred from electronic annotation","NM_001047894","GO:0005575","cellular_component","no biological data available","NM_001047894","GO:0016746","transferase activity, transferring acyl groups","inferred from electronic annotation",{"$nulls":7},"Coding",7.35,7.32,7.26,8.02,7.8,8.11]
["TC0100002756.rn.1",9.28,10.02,-1.67,"down",0.00468410167428299,0.0100470856272721,"Zranb1","zinc finger, RAN-binding domain containing 1 protein-like","chr1","+","ENSRNOT00000023257","coding",204938032,205002145,300,null,100360606,"ENSRNOT00000023257","ENSEMBL","ensembl:known chromosome:Rnor_5.0:1:211953388:211990331:1 gene:ENSRNOG00000017294 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000023257","D4A3I0","ENSRNOT00000023257","Rn.202182","brain| adult","ENSRNOT00000023257","GO:0007010","cytoskeleton organization","inferred from electronic annotation","ENSRNOT00000023257","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000023257","GO:0004221","ubiquitin thiolesterase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000023257","Pfam","IPR001876","Zinc finger, RanBP2-type","Coding",9.39,9.26,9.2,9.97,10.03,10.07]
["TC0900002189.rn.1",5.56,4.41,2.219,"up",0.00475129266819666,0.0101493734553916,"Bard1","BRCA1 associated RING domain 1","chr9","-","NM_022622","coding",78297429,78368951,159,"9q33",64557,"NM_022622","RefSeq","Rattus norvegicus BRCA1 associated RING domain 1 (Bard1), mRNA.","chr9",100,100,"NM_022622","Q9QZH2","NM_022622","Rn.48735","liver| prostate| thymus| adult","NM_022622","GO:0006281","DNA repair","inferred from electronic annotation","NM_022622","GO:0005634","nucleus","inferred from direct assay","NM_022622","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000020414","Pfam","IPR002110","Ankyrin repeat","Coding",5.54,5.41,5.74,4.56,4.46,4.22]
["TC0300002174.rn.1",7.8,8.28,-1.395,"down",0.0048622633356133,0.0103085906979178,"Src","v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog","chr3","+","NM_031977","coding",153547823,153595643,206,"3q42",83805,"NM_031977","RefSeq","Rattus norvegicus v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (Src), mRNA.","chr3",100,100,"NM_031977","Q9WUD9","NM_031977","Rn.112600","adipose tissue| adrenal gland| brain| connective tissue| embryonic tissue| eye| heart| kidney| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_031977","GO:0002376","immune system process","inferred from electronic annotation","NM_031977","GO:0005634","nucleus","inferred from electronic annotation","NM_031977","GO:0004672","protein kinase activity","not recorded","NM_031977","GenMAPP","Integrin-mediated_cell_adhesion_KEGG","ENSRNOT00000012739","Pfam","IPR000719","Protein kinase domain","Coding",7.75,7.78,7.86,8.12,8.3,8.43]
["TC1500001716.rn.1",9.68,10.07,-1.31,"down",0.0048865154297905,0.010338930573809,"Nedd8","neural precursor cell expressed, developmentally down-regulated 8","chr15","-","NM_138878","coding",34340603,34353272,60,"15p13",25490,"NM_138878","RefSeq","Rattus norvegicus neural precursor cell expressed, developmentally down-regulated 8 (Nedd8), mRNA.","chr15",100,100,"NM_138878","Q71UE8","NM_138878","Rn.216415","adrenal gland| brain| connective tissue| dorsal root ganglion| kidney| lung| pancreas| placenta| vibrissa| fetus| juvenile| adult","NM_138878","GO:0006357","regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_138878","GO:0005634","nucleus","inferred from direct assay","NM_138878","GO:0031625","ubiquitin protein ligase binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000064916","Pfam","IPR000626","Ubiquitin-like","Coding",9.8,9.63,9.61,10.18,9.93,10.1]
["TC0400002708.rn.1",8.44,9.37,-1.905,"down",0.00493243911479391,0.0103793337205433,"RGD1306271","similar to KIAA1549 protein","chr4","-","ENSRNOT00000018636","coding",65834933,65962701,340,"4q22",312246,"ENSRNOT00000018636","ENSEMBL","ensembl:known chromosome:Rnor_5.0:4:65664426:65668953:-1 gene:ENSRNOG00000013729 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000018636","D3ZIE2","ENSRNOT00000018636","Rn.22537","brain| placenta| adult",{"$nulls":19},"Coding",8.47,8.32,8.54,9.4,9.27,9.45]
["TC1900000354.rn.1",9.35,10.29,-1.919,"down",0.00498517296447743,0.0104477004289621,"Tnpo2","transportin 2","chr19","+","NM_001107166","coding",26151574,26171812,324,"19q11",304670,"NM_001107166","RefSeq","Rattus norvegicus transportin 2 (Tnpo2), mRNA.","chr19",100,100,"NM_001107166","D3ZER6","NM_001107166","Rn.8631","brain| colon| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| ovary| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_001107166","GO:0006886","intracellular protein transport","inferred from electronic annotation","NM_001107166","GO:0005634","nucleus","inferred from electronic annotation","NM_001107166","GO:0008536","Ran GTPase binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005571","Pfam","IPR000357","HEAT","Coding",9.23,9.34,9.49,10.28,10.28,10.32]
["TC1900001225.rn.1",8.77,8.08,1.613,"up",0.00503661567233778,0.010520809384822,"Sec61g-ps1","SEC61, gamma subunit","chr19","-","ENSRNOT00000071984","coding",26228687,26234546,56,"14q22",689134,"ENSRNOT00000071984","ENSEMBL","ensembl:known chromosome:Rnor_5.0:19:37204310:37210169:-1 gene:ENSRNOG00000050444 gene_biotype:protein_coding transcript_biotype:protein_coding","chr19",100,100,"ENSRNOT00000071984","M0RBS1","ENSRNOT00000071984","Rn.1965","adrenal gland| brain| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| spleen| fetus| adult","ENSRNOT00000071984","GO:0006605","protein targeting","inferred from electronic annotation","ENSRNOT00000071984","GO:0016020","membrane","inferred from electronic annotation","ENSRNOT00000071984","GO:0015450","P-P-bond-hydrolysis-driven protein transmembrane transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000071984","Pfam","IPR001901","Protein translocase complex, SecE/Sec61-gamma subunit","Coding",9.06,8.87,8.39,7.97,8.03,8.25]
["TC0X00000985.rn.1",15.79,15.46,1.257,"up",0.00510907984145042,0.0106251215335701,"Hmg1l1","similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)","chrX","+","ENSRNOT00000044787","coding",115350998,115352261,30,"Xq14",680968,"ENSRNOT00000044787","ENSEMBL","ensembl:known chromosome:Rnor_5.0:X:113803772:113805035:1 gene:ENSRNOG00000029654 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000044787","D4A9T3","ENSRNOT00000044787","Rn.233034","eye","ENSRNOT00000044787","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","ENSRNOT00000044787","GO:0000793","condensed chromosome","inferred from electronic annotation","ENSRNOT00000044787","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000044787","Pfam","IPR009071","High mobility group box domain","Coding",15.84,15.78,15.75,15.59,15.51,15.29]
["TC1000002016.rn.1",6.3,5.71,1.505,"up",0.00517771881661709,0.0107188837520505,"Afmid","arylformamidase","chr10","+","NM_001111366","coding",106828967,106844314,130,null,688283,"NM_001111366","RefSeq","Rattus norvegicus arylformamidase (Afmid), mRNA.","chr10",100,100,"NM_001111366","M0RC77","NM_001111366","Rn.216742","brain| connective tissue| dorsal root ganglion| eye| kidney| liver| placenta| spleen| juvenile| adult","NM_001111366","GO:0019441","tryptophan catabolic process to kynurenine","inferred from electronic annotation","NM_001111366","GO:0005634","nucleus","inferred from electronic annotation","NM_001111366","GO:0004061","arylformamidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073809","Pfam","IPR013094","Alpha/beta hydrolase fold-3","Coding",6.38,6.17,6.34,5.8,5.77,5.57]
["TC0X00001641.rn.1",9.43,8.62,1.753,"up",0.0052253045858372,0.010773425789704,"Ap1s2","adaptor-related protein complex 1, sigma 2 subunit","chrX","-","NM_001127531","coding",32293026,32355434,130,"Xq21",302671,"NM_001127531","RefSeq","Rattus norvegicus adaptor-related protein complex 1, sigma 2 subunit (Ap1s2), mRNA.","chrX",100,100,"NM_001127531","B2GV08","NM_001127531","Rn.17309","brain| dorsal root ganglion| eye| kidney| lung| ovary| placenta| prostate| small intestine| spleen| metamorphosing embryo| adult","NM_001127531","GO:0006886","intracellular protein transport","inferred from electronic annotation","NM_001127531","GO:0030117","membrane coat","inferred from electronic annotation","NM_001127531","GO:0008565","protein transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065075","Pfam","IPR022775","AP complex, mu/sigma subunit","Coding",9.5,9.39,9.39,8.51,8.79,8.57]
["TC1400002158.rn.1",6.59,6.93,-1.266,"down",0.00530009773681162,0.0108837647147367,"Gas2l1","growth arrest-specific 2 like 1","chr14","-","NM_001108365","coding",85308443,85318239,198,"14q21",360973,"NM_001108365","RefSeq","Rattus norvegicus growth arrest-specific 2 like 1 (Gas2l1), mRNA.","chr14",100,100,"NM_001108365","D3ZR69","NM_001108365","Rn.22169","brain| connective tissue| eye| heart| kidney| liver| pancreas| placenta| prostate| testis| metamorphosing embryo| juvenile| adult","NM_001108365","GO:0001578","microtubule bundle formation","inferred from electronic annotation","NM_001108365","GO:0001725","stress fiber","inferred from electronic annotation","NM_001108365","GO:0008017","microtubule binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065135","Pfam","IPR001715","Calponin homology domain","Coding",6.65,6.48,6.65,7.03,6.91,6.85]
["TC1900000094.rn.1",5.47,5.19,1.214,"up",0.00531611828665267,0.0109104785866545,"Ccdc102a","coiled-coil domain containing 102A","chr19","+","NM_001108437","coding",10518837,10535162,130,"19p13",361363,"NM_001108437","RefSeq","Rattus norvegicus coiled-coil domain containing 102A (Ccdc102a), mRNA.","chr19",100,100,"NM_001108437","D3ZSR7","NM_001108437","Rn.41567","connective tissue| heart| kidney| liver| nerve| placenta| prostate| thymus| juvenile| adult",{"$nulls":19},"Coding",5.47,5.47,5.47,5.19,5.24,5.14]
["TC0600002681.rn.1",10.41,11.03,-1.537,"down",0.00536568200176431,0.010979613994352,"Ppp2r5e","ENCODES a protein that exhibits protein phosphatase type 2A regulator activity (inferred) AND  INVOLVED IN regulation of catalytic activity (inferred) AND  signal transduction (inferred) AND  PARTICIPATES IN mRNA decay pathway AND  Wnt signaling pathway AND  FOUND IN cytoplasm (ortholog) AND  INTERACTS WITH 2 3 7 8-tetrachlorodibenzodioxine AND  2 6-dinitrotoluene AND  toluene","chr6","-","mRNARGD4125428_1","coding",98417974,98567031,243,null,"NA","mRNARGD4125428_1","Rat Genome Database","ENCODES a protein that exhibits protein phosphatase type 2A regulator activity (inferred) AND  INVOLVED IN regulation of catalytic activity (inferred) AND  signal transduction (inferred) AND  PARTICIPATES IN mRNA decay pathway AND  Wnt signaling pathway AND  FOUND IN cytoplasm (ortholog) AND  INTERACTS WITH 2 3 7 8-tetrachlorodibenzodioxine AND  2 6-dinitrotoluene AND  toluene","chr6",100,100,{"$nulls":24},"Coding",10.49,10.46,10.29,10.93,11.09,11.08]
["TC0700003213.rn.1",12.44,11.48,1.945,"up",0.00547525032710135,0.011076111963675,"RGD1564420","similar to Hypothetical protein MGC31278","chr7","-","ENSRNOT00000013315","coding",99622648,99677254,330,"7q33",362919,"ENSRNOT00000013315","ENSEMBL","ensembl:known chromosome:Rnor_5.0:7:100210512:100254422:-1 gene:ENSRNOG00000009739 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000013315","F1M1B3","ENSRNOT00000013315","Rn.232960","lung| placenta| prostate| juvenile| adult","ENSRNOT00000013315","GO:0016197","endosomal transport","inferred from electronic annotation","ENSRNOT00000013315","GO:0005768","endosome","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000013315","Pfam","IPR019393","WASH complex, subunit strumpellin","Coding",12.52,12.25,12.55,11.41,11.56,11.46]
["TC0200001916.rn.1",5.21,4.61,1.516,"up",0.00550882852246569,0.0111220200213565,"Ppm1j","protein phosphatase, Mg2+/Mn2+ dependent, 1J","chr2","+","NM_001005540","coding",207263156,207268601,150,"2q34",295341,"NM_001005540","RefSeq","Rattus norvegicus protein phosphatase, Mg2+/Mn2+ dependent, 1J (Ppm1j), mRNA.","chr2",100,100,"NM_001005540","Q641Y6","NM_001005540","Rn.12833","connective tissue| dorsal root ganglion| eye| heart| pituitary gland| placenta| spleen| testis| juvenile| adult","NM_001005540","GO:0006470","protein dephosphorylation","inferred from electronic annotation",{"$nulls":4},"NM_001005540","GO:0004722","protein serine/threonine phosphatase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016833","Pfam","IPR001932","Protein phosphatase 2C (PP2C)-like domain","Coding",5.07,5.07,5.48,4.68,4.54,4.6]
["TC0200003913.rn.1",7.11,9.33,-4.659,"down",0.00560409783209445,0.0112361304234287,"Rxfp1","relaxin/insulin-like family peptide receptor 1","chr2","-","NM_201417","coding",178402408,178520199,210,"2q32",295144,"NM_201417","RefSeq","Rattus norvegicus relaxin/insulin-like family peptide receptor 1 (Rxfp1), mRNA.","chr2",100,100,"NM_201417","Q6R6I6","NM_201417","Rn.109230",null,"NM_201417","GO:0007188","adenylate cyclase-modulating G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_201417","GO:0005886","plasma membrane","inferred from electronic annotation","NM_201417","GO:0004930","G-protein coupled receptor activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000033107","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",6.94,7.16,7.24,9.44,9.28,9.26]
["TC0X00000128.rn.1",6.92,6.52,1.32,"up",0.00561404904441841,0.0112468741725974,"Suv39h1","suppressor of variegation 3-9 homolog 1 (Drosophila)","chrX","+","NM_001106956","coding",15171301,15185202,148,"Xq13",302553,"NM_001106956","RefSeq","Rattus norvegicus suppressor of variegation 3-9 homolog 1 (Drosophila) (Suv39h1), mRNA.","chrX",100,100,"NM_001106956","B1H256","NM_001106956","Rn.98526","adrenal gland| brain| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| pancreas| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001106956","GO:0000183","chromatin silencing at rDNA","inferred from electronic annotation","NM_001106956","GO:0000792","heterochromatin","not recorded","NM_001106956","GO:0008168","methyltransferase activity","not recorded",{"$nulls":3},"ENSRNOT00000008399","Pfam","IPR001214","SET domain","Coding",7.06,6.84,6.86,6.48,6.46,6.61]
["TC2000001006.rn.1",4.74,4.21,1.444,"up",0.0057161472771865,0.0113895968664249,"Hspa1a","heat shock 70kD protein 1A","chr20","-","NM_031971","coding",2699707,4959762,50,"20p12",24472,"NM_031971","RefSeq","Rattus norvegicus heat shock 70kD protein 1A (Hspa1a), mRNA.","chr20",100,100,"NM_031971","Q07439","NM_031971","Rn.1950","connective tissue| eye| lung| placenta| adult","NM_031971","GO:0000723","telomere maintenance","not recorded","NM_031971","GO:0002199","zona pellucida receptor complex","not recorded","NM_031971","GO:0002020","protease binding","inferred from physical interaction","NM_031971","GenMAPP","HSP70_and_Apoptosis","ENSRNOT00000049667","Pfam","IPR004753","Cell shape determining protein MreB/Mrl","Coding",5.03,4.57,4.62,4.39,4.14,4.09]
["TC0100000855.rn.1",4.86,5.38,-1.434,"down",0.00579402000176791,0.0114960504226968,"Shisa7","shisa family member 7","chr1","+","NM_001145175","coding",72545505,72564513,170,"1q12",691429,"NM_001145175","RefSeq","Rattus norvegicus shisa family member 7 (Shisa7), mRNA.","chr1",100,100,"NM_001145175","D3ZPJ0","NM_001145175","Rn.50094","brain| adult",{"$nulls":19},"Coding",4.8,4.89,4.89,5.21,5.35,5.57]
["TC0300004755.rn.1",6.25,7.12,-1.828,"down",0.00589374307577579,0.0116301500589914,"Tnnc2","troponin C type 2 (fast)","chr3","-","NM_001037351","coding",161243606,161246543,88,"3q42",296369,"NM_001037351","RefSeq","Rattus norvegicus troponin C type 2 (fast) (Tnnc2), mRNA.","chr3",100,100,"NM_001037351","Q304F3","NM_001037351","Rn.43529","brain| dorsal root ganglion| eye| muscle| fetus| adult","NM_001037351","GO:0003009","skeletal muscle contraction","inferred from electronic annotation","NM_001037351","GO:0005861","troponin complex","inferred from electronic annotation","NM_001037351","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000020348","Pfam","IPR002048","EF-hand domain","Coding",6.28,6.19,6.29,7.14,7.15,7.08]
["TC0100008033.rn.1",5.1,5.65,-1.464,"down",0.00597599298430897,0.0117211813704319,"LOC102547413","INTERACTS WITH formaldehyde (ortholog) AND  valproic acid (ortholog) AND  vanadyl sulfate (ortholog)","chr1","+","mRNARGD7625114_1","coding",87665849,87675282,40,null,"NA","mRNARGD7625114_1","Rat Genome Database","INTERACTS WITH formaldehyde (ortholog) AND  valproic acid (ortholog) AND  vanadyl sulfate (ortholog)","chr1",100,100,{"$nulls":24},"Coding",5.03,4.97,5.29,5.76,5.81,5.38]
["TC0300004537.rn.1",11.16,10.86,1.231,"up",0.00601015971590479,0.0117623348833915,"Eif2s2","eukaryotic translation initiation factor 2, subunit 2 beta","chr3","-","NM_199380","coding",150390202,150412273,150,"3q42",296302,"NM_199380","RefSeq","Rattus norvegicus eukaryotic translation initiation factor 2, subunit 2 beta (Eif2s2), mRNA.","chr3",100,100,"NM_199380","Q6P685","NM_199380","Rn.133804","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_199380","GO:0001701","in utero embryonic development","not recorded",{"$nulls":4},"NM_199380","GO:0003743","translation initiation factor activity","not recorded",{"$nulls":3},"ENSRNOT00000023786","Pfam","IPR002735","Translation initiation factor IF2/IF5","Coding",11.16,11.1,11.21,10.92,10.88,10.77]
["TC1100000875.rn.1",8.16,6.89,2.412,"up",0.0060988484139522,0.0118717050424433,"Masp1","mannan-binding lectin serine peptidase 1","chr11","+","NM_022257","coding",80736450,80818840,282,"11q23",64023,"NM_022257","RefSeq","Rattus norvegicus mannan-binding lectin serine peptidase 1 (Masp1), mRNA.","chr11",100,100,"NM_022257","Q8CHN8","NM_022257","Rn.203236","adipose tissue| brain| connective tissue| eye| heart| liver| muscle| ovary| prostate| juvenile| adult","NM_022257","GO:0001867","complement activation, lectin pathway","not recorded","NM_022257","GO:0005615","extracellular space","inferred from direct assay","NM_022257","GO:0004252","serine-type endopeptidase activity","inferred from direct assay","NM_022257","GenMAPP","Complement_Activation_Classical","ENSRNOT00000002507","Pfam","IPR000436","Sushi/SCR/CCP","Coding",8.08,8.54,7.87,6.62,7.17,6.89]
["TC0900002683.rn.1",5.65,4.69,1.945,"up",0.00618481439035234,0.01197463338997,"Emilin2","elastin microfibril interfacer 2","chr9","-","ENSRNOT00000056272","coding",119594049,119653406,148,"9q38",316736,"ENSRNOT00000056272","ENSEMBL","ensembl:known chromosome:Rnor_5.0:9:119048148:119106488:-1 gene:ENSRNOG00000014837 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000056272","F1LXD8","ENSRNOT00000056272","Rn.232667","brain| prostate| adult",{"$nulls":4},"ENSRNOT00000056272","GO:0005576","extracellular region","inferred from electronic annotation","ENSRNOT00000056272","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000056272","Pfam","IPR001073","Complement C1q protein","Coding",6.02,5.46,5.46,4.71,4.72,4.65]
["TC0100006874.rn.1",11.18,13.13,-3.864,"down",0.00622015492378294,0.0120200245187494,"Bnip3","BCL2/adenovirus E1B interacting protein 3","chr1","-","NM_053420","coding",211248097,211265282,90,"1q41",84480,"NM_053420","RefSeq","Rattus norvegicus BCL2/adenovirus E1B interacting protein 3 (Bnip3), mRNA.","chr1",100,100,"NM_053420","Q9ET45","NM_053420","Rn.2060","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| vibrissa| fetus| juvenile| adult","NM_053420","GO:0001666","response to hypoxia","inferred from direct assay","NM_053420","GO:0005622","intracellular","not recorded","NM_053420","GO:0042802","identical protein binding","not recorded",{"$nulls":3},"ENSRNOT00000023477","Pfam","IPR010548","BNIP3","Coding",11.32,11.04,11.19,13.06,13.19,13.15]
["TC1900000408.rn.1",8.12,7.75,1.292,"up",0.00637138002088519,0.0122349372477113,"Gab1","GRB2-associated binding protein 1","chr19","+","NM_001108444","coding",30794290,30903819,198,"19q11",361388,"NM_001108444","RefSeq","Rattus norvegicus GRB2-associated binding protein 1 (Gab1), mRNA.","chr19",100,100,"NM_001108444","C6JUQ2","NM_001108444","Rn.1725","brain| colon| connective tissue| dorsal root ganglion| eye| kidney| lung| placenta| prostate| testis| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_001108444","GO:0000187","activation of MAPK activity","not recorded","NM_001108444","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001108444","GO:0004871","signal transducer activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024390","Pfam","IPR001849","Pleckstrin homology domain","Coding",8.18,8.09,8.09,7.74,7.93,7.58]
["TC0800000931.rn.1",7.1,7.5,-1.32,"down",0.00639306328878912,0.0122657281190143,"Igdcc4","immunoglobulin superfamily, DCC subclass, member 4","chr8","+","ENSRNOT00000044706","coding",70591576,70627333,250,"8q24",363081,"ENSRNOT00000044706","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:70300509:70322185:1 gene:ENSRNOG00000033496 gene_biotype:protein_coding transcript_biotype:protein_coding","chr8",100,100,"ENSRNOT00000044706","F1LTP1","ENSRNOT00000044706","Rn.226021","brain| kidney| metamorphosing embryo| adult",{"$nulls":8},"ENSRNOT00000044706","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000044706","Pfam","IPR003961","Fibronectin, type III","Coding",7.06,6.99,7.25,7.54,7.63,7.34]
["TC0500002214.rn.1",10.85,11.47,-1.537,"down",0.00644780389482382,0.012332614122108,"Atp6v1h","ATPase, H+ transporting, lysosomal V1 subunit H","chr5","-","NM_001013929","coding",14262352,14367898,225,"5q12",297797,"NM_001013929","RefSeq","Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit H (Atp6v1h), mRNA.","chr5",100,100,"NM_001013929","Q5XIL1","NM_001013929","Rn.21454","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| kidney| liver| lung| ovary| pancreas| pituitary gland| testis| thymus| juvenile| adult","NM_001013929","GO:0006897","endocytosis","inferred from electronic annotation","NM_001013929","GO:0000221","vacuolar proton-transporting V-type ATPase, V1 domain","inferred from electronic annotation","NM_001013929","GO:0046961","proton-transporting ATPase activity, rotational mechanism","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065402","Pfam","IPR004908","ATPase, V1 complex, subunit H","Coding",10.9,10.9,10.74,11.38,11.52,11.51]
["TC1000004144.rn.1",11.79,11.47,1.248,"up",0.00649740135922169,0.0123817320908567,"Acox1","acyl-CoA oxidase 1, palmitoyl","chr10","-","NM_017340","coding",104722990,104748003,170,"10q32.3",50681,"NM_017340","RefSeq","Rattus norvegicus acyl-CoA oxidase 1, palmitoyl (Acox1), mRNA.","chr10",100,100,"NM_017340","P07872","NM_017340","Rn.31796","adipose tissue| brain| colon| connective tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| fetus| juvenile| adult","NM_017340","GO:0000038","very long-chain fatty acid metabolic process","inferred from electronic annotation","NM_017340","GO:0005737","cytoplasm","not recorded","NM_017340","GO:0003995","acyl-CoA dehydrogenase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000042372","Pfam","IPR002655","Acyl-CoA oxidase, C-terminal","Coding",11.8,11.76,11.8,11.54,11.55,11.31]
["TC2000001201.rn.1",12.75,13.46,-1.636,"down",0.00655556838134407,0.0124537933930579,"LOC294154","similar to chromosome 6 open reading frame 106 isoform a","chr20","-","NM_001039607","coding",7331321,7397393,50,"20p12",294154,"NM_001039607","RefSeq","Rattus norvegicus similar to chromosome 6 open reading frame 106 isoform a (LOC294154), mRNA.","chr20",100,100,"NM_001039607","Q2M1K7","NM_001039607","Rn.116613","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| placenta| prostate| small intestine| spleen| testis| thymus| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":8},"ENSRNOT00000059426","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",12.83,12.55,12.87,13.24,13.52,13.61]
["TC0700002425.rn.1",15.26,15.62,-1.283,"down",0.00661971206727625,0.0125289843452447,null,null,"chr7","-",null,"coding",28814293,28815004,30,null,"NA","ENSRNOT00000047410","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:28922941:28923652:-1 gene:ENSRNOG00000033320 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000047410","M0R6T0",{"$nulls":3},"ENSRNOT00000047410","GO:0055114","oxidation-reduction process","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000047410","GO:0016620","oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000047410","Pfam","IPR020828","Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain","Coding",15.27,15.27,15.24,15.58,15.77,15.52]
["TC0300002732.rn.1",6.34,5.61,1.659,"up",0.00670611625329307,0.0126397159423317,"Agpat2","1-acylglycerol-3-phosphate O-acyltransferase 2","chr3","-","NM_001107821","coding",4044046,4055953,163,"3p13",311821,"NM_001107821","RefSeq","Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 2 (Agpat2), mRNA.","chr3",100,100,"NM_001107821","D4AC45","NM_001107821","Rn.55456","adrenal gland| colon| connective tissue| embryonic tissue| eye| heart| liver| lung| muscle| pancreas| placenta| prostate| small intestine| spleen| testis| fetus| juvenile| adult","NM_001107821","GO:0001819","positive regulation of cytokine production","inferred from electronic annotation","NM_001107821","GO:0005783","endoplasmic reticulum","inferred from electronic annotation","NM_001107821","GO:0003841","1-acylglycerol-3-phosphate O-acyltransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000026408","Pfam","IPR002123","Phospholipid/glycerol acyltransferase","Coding",6.29,6.31,6.43,5.66,5.51,5.67]
["TC0800000656.rn.1",8.99,7.81,2.266,"up",0.00678777920589799,0.0127386620236008,"RGD1563941","similar to hypothetical protein FLJ20010","chr8","+","NM_001109293","coding",52829085,52830609,30,"8q23",500993,"NM_001109293","RefSeq","Rattus norvegicus similar to hypothetical protein FLJ20010 (RGD1563941), mRNA.","chr8",100,100,"NM_001109293","B0BNK2","NM_001109293","Rn.12131","connective tissue| heart| ovary| pancreas| prostate| small intestine| spleen| adult",{"$nulls":19},"Coding",9.03,8.59,9.34,7.84,8.06,7.53]
["TC1200000778.rn.1",6.89,7.36,-1.385,"down",0.00686188767962547,0.0128059573359233,"Gatc","glutamyl-tRNA(Gln) amidotransferase, subunit C","chr12","+","NM_001108339","coding",47031586,47039556,70,"12q16",360821,"NM_001108339","RefSeq","Rattus norvegicus glutamyl-tRNA(Gln) amidotransferase, subunit C (Gatc), mRNA.","chr12",100,100,"NM_001108339","D3ZY68","NM_001108339","Rn.42741","brain| dorsal root ganglion| embryonic tissue| heart| liver| lung| ovary| pancreas| prostate| spleen| metamorphosing embryo| juvenile| adult","NM_001108339","GO:0006450","regulation of translational fidelity","inferred from electronic annotation","NM_001108339","GO:0005739","mitochondrion","inferred from electronic annotation","NM_001108339","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000001536","Pfam","IPR003837","Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit","Coding",6.75,6.96,6.96,7.43,7.53,7.11]
["TC1500000847.rn.1",4.48,5.24,-1.693,"down",0.00694152384622206,0.0129046672445124,"Siah3","siah E3 ubiquitin protein ligase family member 3","chr15","+","NM_001191118","coding",57505449,57568743,30,"15q11",692004,"NM_001191118","RefSeq","Rattus norvegicus siah E3 ubiquitin protein ligase family member 3 (Siah3), mRNA.","chr15",100,100,"NM_001191118","F1M4M8","NM_001191118","Rn.228206",null,"NM_001191118","GO:0006511","ubiquitin-dependent protein catabolic process","inferred from electronic annotation","NM_001191118","GO:0005634","nucleus","inferred from electronic annotation","NM_001191118","GO:0016874","ligase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000064945","Pfam","IPR018121","Seven-in-absentia protein, TRAF-like domain","Coding",4.44,4.87,4.12,5.39,5.15,5.18]
["TC1300000017.rn.1",6.01,7.87,-3.63,"down",0.00698801438781509,0.0129453767655685,"Cntnap5c","contactin associated protein-like 5C","chr13","+","NM_001047866","coding",6312877,7537275,250,"13p12-p11",297846,"NM_001047866","RefSeq","Rattus norvegicus contactin associated protein-like 5C (Cntnap5c), mRNA.","chr13",100,100,"NM_001047866","F1LMS4","NM_001047866","Rn.234265",null,"NM_001047866","GO:0007155","cell adhesion","inferred from electronic annotation","NM_001047866","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000067198","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000067198","Pfam","IPR000421","Coagulation factor 5/8 C-terminal type domain","Coding",6.24,5.74,6.06,7.47,7.92,8.22]
["TC0100006191.rn.1",6.69,7.01,-1.248,"down",0.0070587611971424,0.0130206667578359,"Trim68","tripartite motif containing 68","chr1","-","ENSRNOT00000075222","coding",167835896,167849859,80,null,684189,"ENSRNOT00000075222","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:174021170:174027149:-1 gene:ENSRNOG00000047229 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000075222","M0R4M4",{"$nulls":3},"ENSRNOT00000075222","GO:0051865","protein autoubiquitination","inferred from electronic annotation","ENSRNOT00000075222","GO:0005634","nucleus","not recorded","ENSRNOT00000075222","GO:0004842","ubiquitin-protein transferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000075222","Pfam","IPR000315","Zinc finger, B-box","Coding",6.63,6.68,6.75,7.03,7.02,6.97]
["TC1500001436.rn.1",10.39,11.2,-1.753,"down",0.00712550150765995,0.0130953329125646,"Txndc16","thioredoxin domain containing 16","chr15","-","ENSRNOT00000008372","coding",19472522,19547417,244,"15p14",361025,"ENSRNOT00000008372","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:23438880:23507088:-1 gene:ENSRNOG00000006334 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000008372","D3ZQK4",{"$nulls":3},"ENSRNOT00000008372","GO:0045454","cell redox homeostasis","inferred from electronic annotation","ENSRNOT00000008372","GO:0005788","endoplasmic reticulum lumen","not recorded",{"$nulls":7},"ENSRNOT00000008372","Pfam","IPR013766","Thioredoxin domain","Coding",10.42,10.34,10.42,11.38,11.08,11.14]
["TC0X00000138.rn.1",8.87,9.15,-1.214,"down",0.00725755776092379,0.0132692385922542,"Pqbp1","polyglutamine binding protein 1","chrX","+","NM_001013957","coding",15348138,15453130,136,"Xq13",302557,"NM_001013957","RefSeq","Rattus norvegicus polyglutamine binding protein 1 (Pqbp1), mRNA.","chrX",100,100,"NM_001013957","Q6PCT5","NM_001013957","Rn.11769","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| ovary| pituitary gland| placenta| prostate| spleen| metamorphosing embryo| adult","NM_001013957","GO:0006351","transcription, DNA-templated","inferred from electronic annotation","NM_001013957","GO:0005634","nucleus","inferred from electronic annotation","NM_001013957","GO:0043021","ribonucleoprotein complex binding","not recorded",{"$nulls":3},"ENSRNOT00000010536","Pfam","IPR001202","WW domain","Coding",8.9,8.81,8.9,9.23,9.16,9.06]
["TC0700000216.rn.1",6.5,5.71,1.729,"up",0.0073185261543578,0.0133274051606405,"Sbno2","strawberry notch homolog 2 (Drosophila)","chr7","+","NM_001108068","coding",12471815,12515705,390,"7q11",314619,"NM_001108068","RefSeq","Rattus norvegicus strawberry notch homolog 2 (Drosophila) (Sbno2), mRNA.","chr7",100,100,"NM_001108068","D3ZDU8","NM_001108068","Rn.67287","adipose tissue| brain| colon| dorsal root ganglion| kidney| liver| pancreas| placenta| prostate| spleen| testis| thymus| fetus| juvenile| adult","NM_001108068","GO:0002281","macrophage activation involved in immune response","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000068197","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000068197","Pfam","IPR006935","Helicase/UvrB domain","Coding",6.45,6.45,6.61,5.64,5.77,5.71]
["TC1800001553.rn.1",6.21,4.98,2.346,"up",0.00739911204089215,0.0134136897581233,"Piezo2","piezo-type mechanosensitive ion channel component 2","chr18","-","ENSRNOT00000000129","coding",58353355,58728521,640,"18q12.1",307380,"ENSRNOT00000000129","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:18:57671783:57948727:-1 gene:ENSRNOG00000038784 gene_biotype:protein_coding transcript_biotype:protein_coding","chr18",100,100,"ENSRNOT00000000129","D3ZB88","ENSRNOT00000000129","Rn.230604","dorsal root ganglion","ENSRNOT00000000129","GO:0006812","cation transport","inferred from electronic annotation","ENSRNOT00000000129","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000000129","GO:0005261","cation channel activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065693","Pfam","IPR027272","Piezo family","Coding",5.98,6.28,6.36,5.03,4.79,5.12]
["TC0100007181.rn.1",6.44,5.81,1.548,"up",0.00753340394322769,0.0135735670467595,"Plcb3","phospholipase C, beta 3 (phosphatidylinositol-specific)","chr1","-","NM_033350","coding",222207887,222224979,380,"1q43",29322,"NM_033350","RefSeq","Rattus norvegicus phospholipase C, beta 3 (phosphatidylinositol-specific) (Plcb3), mRNA.","chr1",100,100,"NM_033350","Q99JE6","NM_033350","Rn.16983","brain| colon| lung| ovary| prostate|tailbud embryo| fetus| juvenile| adult","NM_033350","GO:0003073","regulation of systemic arterial blood pressure","inferred from electronic annotation","NM_033350","GO:0005634","nucleus","not recorded","NM_033350","GO:0004435","phosphatidylinositol phospholipase C activity","inferred from direct assay","NM_033350","GenMAPP","G_Protein_Signaling","ENSRNOT00000028720","Pfam","IPR000008","C2 domain","Coding",6.44,6.4,6.48,5.81,5.84,5.78]
["TC0700003835.rn.1",5.05,4.11,1.919,"up",0.00761270305164731,0.0136664217531517,"Olr1877","olfactory receptor 1102","chr7","-","ENSRNOT00000014258","coding",139781784,139844742,96,"7q36",300194,"ENSRNOT00000014258","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:138979148:138980116:-1 gene:ENSRNOG00000010749 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000014258","F1M8T9",{"$nulls":3},"ENSRNOT00000014258","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","ENSRNOT00000014258","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000014258","GO:0004984","olfactory receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000014258","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",4.86,4.66,5.62,4.24,4.01,4.08]
["TC1500001288.rn.1",7.55,5.65,3.732,"up",0.0076456560088326,0.0136951787778385,"Nid2","nidogen 2 (osteonidogen)","chr15","-","NM_001012005","coding",4893997,4951913,305,"15p16",302248,"NM_001012005","RefSeq","Rattus norvegicus nidogen 2 (osteonidogen) (Nid2), mRNA.","chr15",100,100,"NM_001012005","B5DFC9","NM_001012005","Rn.98892","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pineal gland| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001012005","GO:0007160","cell-matrix adhesion","inferred from electronic annotation","NM_001012005","GO:0005578","proteinaceous extracellular matrix","not recorded","NM_001012005","GO:0005509","calcium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000383","Pfam","IPR000033","LDLR class B repeat","Coding",7.46,7.7,7.48,5.78,5.65,5.53]
["TCUn_AABR07024104v100000001.rn.1",7.33,9.17,-3.58,"down",0.00769560526424408,0.013753123358558,"Chchd10","coiled-coil-helix-coiled-coil-helix domain containing 10","chrUn_AABR07024104v1","-","NM_175329","coding",18096,20129,41,"10 C1|10",103172,"NM_175329","RefSeq","Mus musculus coiled-coil-helix-coiled-coil-helix domain containing 10 (Chchd10), mRNA.","chrUn_AABR07024104v1",100,100,"NM_175329","Q2V056","NM_175329","Mm.333849","blood| brain| embryonic tissue| epididymis| extraembryonic tissue| eye| heart| intestine| joint| kidney| liver| lung| lymph node| mammary gland| muscle| ovary| pancreas| salivary gland| skin| stomach| testis| thymus| thyroid| tongue| uterus|oocyte| cleavage| blastocyst| organogenesis| fetus| neonate| juvenile| adult","NM_175329","GO:0006119","oxidative phosphorylation","not recorded","NM_175329","GO:0005739","mitochondrion","inferred from direct assay","NM_175329","GO:0003674","molecular_function","no biological data available",{"$nulls":7},"Coding",7.4,7.19,7.39,9.03,9.23,9.25]
["TC0500000337.rn.1",4.98,4.12,1.815,"up",0.00783056822441223,0.0139042012293023,"LOC100911501","60S ribosomal protein L39-like","chr5","+","mRNARGD6492240_1","coding",39291345,39291509,30,null,"NA","mRNARGD6492240_1","Rat Genome Database","60S ribosomal protein L39-like","chr5",100,100,{"$nulls":24},"Coding",5.34,5,4.61,4.14,4,4.23]
["TC0X00001997.rn.1",7.14,7.95,-1.753,"down",0.00787771521185464,0.0139508401412098,"Pabpc1l2a","poly(A) binding protein, cytoplasmic 1-like 2A","chrX","-","ENSRNOT00000029100","coding",73893766,73895742,50,"Xq31",302405,"ENSRNOT00000029100","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:74699763:74700365:-1 gene:ENSRNOG00000022267 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000029100","F1M8Y9",{"$nulls":11},"ENSRNOT00000029100","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000029100","Pfam","IPR000504","RNA recognition motif domain","Coding",7.05,7.16,7.2,8.11,8.03,7.7]
["TC0200001159.rn.1",9.58,8.65,1.905,"up",0.0079629437726827,0.0140467435897254,"Supt20","suppressor of Ty 20","chr2","+","NM_001014170","coding",143892538,143925860,378,"2q26",361946,"NM_001014170","RefSeq","Rattus norvegicus suppressor of Ty 20 (Supt20), mRNA.","chr2",100,100,"NM_001014170","Q66HC7","NM_001014170","Rn.45268","brain| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| muscle| ovary| pancreas| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001014170","GO:0007369","gastrulation","inferred from electronic annotation","NM_001014170","GO:0000124","SAGA complex","inferred from electronic annotation","NM_001014170","GO:0003712","transcription cofactor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000058026","Pfam","IPR021950","Transcription factor Spt20","Coding",9.44,9.47,9.83,8.72,8.71,8.51]
["TC1600001282.rn.1",13.46,14.2,-1.67,"down",0.00806352110554186,0.0141657994664611,"Ghitm","growth hormone inducible transmembrane protein","chr16","-","NM_001005908","coding",14369500,14382722,201,"16p14",290596,"NM_001005908","RefSeq","Rattus norvegicus growth hormone inducible transmembrane protein (Ghitm), mRNA.","chr16",100,100,"NM_001005908","Q5XIA8","NM_001005908","Rn.98375","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001005908","GO:0006915","apoptotic process","inferred from electronic annotation","NM_001005908","GO:0005739","mitochondrion","not recorded","ENSRNOT00000018723","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018723","Pfam","IPR006214","Bax inhibitor 1-related","Coding",13.5,13.47,13.4,14.1,14.33,14.17]
["TC1800000214.rn.1",9.03,9.47,-1.357,"down",0.00813322417604202,0.0142481661717682,"Sap130","Sin3A associated protein","chr18","+","ENSRNOT00000022761","coding",24397042,24497831,298,"18p12",307527,"ENSRNOT00000022761","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:24138859:24166083:1 gene:ENSRNOG00000016773 gene_biotype:protein_coding transcript_biotype:protein_coding","chr18",100,100,"ENSRNOT00000022761","D3ZLP9",{"$nulls":3},"ENSRNOT00000022761","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","ENSRNOT00000022761","GO:0005634","nucleus","not recorded","ENSRNOT00000022761","GO:0003713","transcription coactivator activity","inferred from electronic annotation",{"$nulls":7},"Coding",9.08,8.77,9.23,9.49,9.38,9.55]
["TC1000004168.rn.1",6.05,5.37,1.602,"up",0.00827645516348053,0.0144000703770854,"Rhbdf2","rhomboid 5 homolog 2 (Drosophila)","chr10","-","NM_001107067","coding",105573759,105600950,307,"10q32.3",303690,"NM_001107067","RefSeq","Rattus norvegicus rhomboid 5 homolog 2 (Drosophila) (Rhbdf2), transcript variant 1, mRNA.","chr10",100,100,"NM_001107067","F1LWZ3","NM_001107067","Rn.141168","lung| ovary| prostate| spleen| juvenile| adult","NM_001107067","GO:0006508","proteolysis","inferred from electronic annotation","NM_001107067","GO:0005789","endoplasmic reticulum membrane","inferred from electronic annotation","NM_001107067","GO:0004252","serine-type endopeptidase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000068026","Pfam","IPR022764","Peptidase S54, rhomboid domain","Coding",5.98,5.98,6.18,5.42,5.3,5.38]
["TC0X00000371.rn.1",7.72,7.35,1.292,"up",0.00839170614384201,0.0145328373556214,"RGD1560997","similar to ribosomal protein S27a","chrX","+","ENSRNOT00000051805","coding",37026408,37026912,28,"Xq21",367795,"ENSRNOT00000051805","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:37347775:37348239:1 gene:ENSRNOG00000032132 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000051805","F1M927",{"$nulls":3},"ENSRNOT00000051805","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000051805","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000051805","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051805","Pfam","IPR000626","Ubiquitin-like","Coding",7.58,7.66,7.92,7.26,7.29,7.49]
["TC0100006894.rn.1",10.82,10.27,1.464,"up",0.00847442564220775,0.0146331260269176,"Echs1","enoyl CoA hydratase, short chain, 1, mitochondrial","chr1","-","ENSRNOT00000025446","coding",212570211,212579068,83,"1q41",140547,"ENSRNOT00000025446","ENSEMBL","ensembl:known chromosome:Rnor_5.0:1:219484863:219493689:-1 gene:ENSRNOG00000018522 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000025446","P14604","ENSRNOT00000025446","Rn.6847","brain| dorsal root ganglion| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus| vibrissa| juvenile| adult","ENSRNOT00000025446","GO:0006635","fatty acid beta-oxidation","inferred from electronic annotation","ENSRNOT00000025446","GO:0005739","mitochondrion","inferred from direct assay","ENSRNOT00000025446","GO:0004300","enoyl-CoA hydratase activity","inferred from direct assay","ENSRNOT00000025446","GenMAPP","Fatty_Acid_Synthesis","ENSRNOT00000025446","Pfam","IPR001753","Crotonase superfamily","Coding",11.14,10.62,10.71,10.25,10.46,10.1]
["TC0200002001.rn.1",10.01,9.72,1.223,"up",0.00862108662707436,0.0147954162066317,"Clcc1","chloride channel CLIC-like 1","chr2","+","NM_133414","coding",211450437,211480305,188,"2q34",170927,"NM_133414","RefSeq","Rattus norvegicus chloride channel CLIC-like 1 (Clcc1), mRNA.","chr2",100,100,"NM_133414","Q9WU61","NM_133414","Rn.26586","brain| colon| connective tissue| dorsal root ganglion| eye| kidney| lung| pancreas| pituitary gland| placenta| prostate| metamorphosing embryo| juvenile| adult","NM_133414","GO:0006821","chloride transport","inferred from direct assay","NM_133414","GO:0005634","nucleus","inferred from direct assay","NM_133414","GO:0005254","chloride channel activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000027617","Pfam","IPR009231","Chloride channel CLIC-like","Coding",10.08,10.1,9.84,9.8,9.7,9.66]
["TC0500002343.rn.1",5.26,4.9,1.283,"up",0.00868517035072312,0.0148732550814493,"Slc26a7","solute carrier family 26 (anion exchanger), member 7","chr5","-","NM_001106638","coding",27986656,28131202,230,"5q13",297910,"NM_001106638","RefSeq","Rattus norvegicus solute carrier family 26 (anion exchanger), member 7 (Slc26a7), mRNA.","chr5",100,100,"NM_001106638","D3Z8P6","NM_001106638","Rn.109484","eye","NM_001106638","GO:0001696","gastric acid secretion","inferred from electronic annotation","NM_001106638","GO:0005737","cytoplasm","not recorded","NM_001106638","GO:0005253","anion channel activity","not recorded",{"$nulls":3},"ENSRNOT00000067331","Pfam","IPR002645","STAS domain","Coding",5.33,5.38,5.06,4.99,4.91,4.79]
["TC0100007837.rn.1",8.78,9.42,-1.558,"down",0.00879046051405066,0.0150100824601351,"Usmg5","up-regulated during skeletal muscle growth 5 homolog (mouse)","chr1","-","NM_133544","coding",266858690,266866873,92,"1q54",171069,"NM_133544","RefSeq","Rattus norvegicus up-regulated during skeletal muscle growth 5 homolog (mouse) (Usmg5), mRNA.","chr1",100,100,"NM_133544","Q9JJW3","NM_133544","Rn.15277","adipose tissue| adrenal gland| brain| colon| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| placenta| prostate| small intestine| spleen| fetus| adult",{"$nulls":4},"NM_133544","GO:0005753","mitochondrial proton-transporting ATP synthase complex","inferred from direct assay",{"$nulls":11},"Coding",8.87,8.69,8.78,9.41,9.49,9.37]
["TC1600001557.rn.1",3.61,3.98,-1.292,"down",0.00888628695999039,0.0151185840482019,"Hand2","heart and neural crest derivatives expressed 2","chr16","-","NM_022696","coding",36305829,36373549,30,"16p11",64637,"NM_022696","RefSeq","Rattus norvegicus heart and neural crest derivatives expressed 2 (Hand2), mRNA.","chr16",100,100,"NM_022696","P61295","NM_022696","Rn.41057","adrenal gland| connective tissue| embryonic tissue| heart| placenta| prostate| fetus| adult","NM_022696","GO:0001525","angiogenesis","inferred from electronic annotation","NM_022696","GO:0000790","nuclear chromatin","inferred from electronic annotation","NM_022696","GO:0000977","RNA polymerase II regulatory region sequence-specific DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000030765","Pfam","IPR011598","Myc-type, basic helix-loop-helix (bHLH) domain","Coding",3.73,3.58,3.52,3.9,3.87,4.16]
["TC0X00001310.rn.1",7.53,9.08,-2.928,"down",0.00901132719478319,0.0152504122649474,"Pdzd4","PDZ domain containing 4","chrX","+","NM_001135836","coding",156963571,156993591,100,null,293856,"NM_001135836","RefSeq","Rattus norvegicus PDZ domain containing 4 (Pdzd4), mRNA.","chrX",100,100,"NM_001135836","D3ZLI9","NM_001135836","Rn.28086","adipose tissue| brain| adult",{"$nulls":8},"ENSRNOT00000056376","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000056376","Pfam","IPR001478","PDZ domain","Coding",7.45,7.58,7.56,9.14,9.08,9.02]
["TC0400000528.rn.1",9.47,10.07,-1.516,"down",0.00911253882154415,0.0153653573936171,"Ahcyl2","adenosylhomocysteinase-like 2","chr4","+","NM_001173510","coding",57050241,57199870,265,"4q22",312192,"NM_001173510","RefSeq","Rattus norvegicus adenosylhomocysteinase-like 2 (Ahcyl2), mRNA.","chr4",100,100,"ENSRNOT00000025165","D3ZWL6","NM_001173510","Rn.8222","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| fetus| juvenile| adult","NM_001173510","GO:0006730","one-carbon metabolic process","inferred from electronic annotation",{"$nulls":4},"NM_001173510","GO:0004013","adenosylhomocysteinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025165","Pfam","IPR000043","Adenosylhomocysteinase","Coding",9.51,9.51,9.38,9.95,10.06,10.21]
["TC0200005004.rn.1",7.19,6.67,1.434,"up",0.00920290519842483,0.0154556816646204,"Dclre1b","DNA cross-link repair 1B","chr2","-","NM_001025687","coding",206285085,206293599,117,"2q34",310745,"NM_001025687","RefSeq","Rattus norvegicus DNA cross-link repair 1B (Dclre1b), mRNA.","chr2",100,100,"NM_001025687","Q4KLY6","NM_001025687","Rn.39355","brain| connective tissue| eye| liver| nerve| ovary| pancreas| prostate| testis| metamorphosing embryo| adult","NM_001025687","GO:0000723","telomere maintenance","not recorded","NM_001025687","GO:0000781","chromosome, telomeric region","inferred from electronic annotation","NM_001025687","GO:0008409","5'-3' exonuclease activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000026213","Pfam","IPR011084","DNA repair metallo-beta-lactamase","Coding",7.12,7.09,7.37,6.8,6.82,6.39]
["TC0700001102.rn.1",9.13,9.72,-1.505,"down",0.00921881550369169,0.0154762941506237,"Med30","mediator complex subunit 30","chr7","+","NM_001130539","coding",92234594,92256218,60,"7q31",299905,"NM_001130539","RefSeq","Rattus norvegicus mediator complex subunit 30 (Med30), mRNA.","chr7",100,100,"NM_001130539","D3ZG00","NM_001130539","Rn.203190","brain| connective tissue| heart| kidney| lung| pancreas| placenta| spleen| adult","NM_001130539","GO:0006357","regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_001130539","GO:0005634","nucleus","not recorded","NM_001130539","GO:0001104","RNA polymerase II transcription cofactor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000067491","Pfam","IPR021019","Mediator complex, subunit Med30, metazoa","Coding",9.32,8.93,9.14,9.52,10,9.65]
["TC0X00001348.rn.1",4.43,4.94,-1.424,"down",0.00936586357709051,0.0156226633567927,"LOC102552884","protein DDX26B-like","chrX","+","mRNARGD7742464_1","coding",158892161,158903026,40,null,"NA","mRNARGD7742464_1","Rat Genome Database","protein DDX26B-like","chrX",100,100,{"$nulls":24},"Coding",4.45,4.37,4.46,4.62,4.93,5.26]
["TC0100004042.rn.1",9.76,10.13,-1.292,"down",0.00937879821570887,0.0156333559927767,"Vta1","vesicle (multivesicular body) trafficking 1","chr1","-","NM_001025640","coding",8829842,8878186,122,"1p13",292640,"NM_001025640","RefSeq","Rattus norvegicus vesicle (multivesicular body) trafficking 1 (Vta1), mRNA.","chr1",100,100,"NM_001025640","Q4KM55","NM_001025640","Rn.1896","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| liver| lung| nerve| ovary| pancreas| placenta| prostate| spleen| thymus| juvenile| adult",{"$nulls":4},"NM_001025640","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000064836","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",9.82,9.67,9.79,10.19,10.2,9.99]
["TC0500002869.rn.1",8.14,7.15,1.986,"up",0.00948960263172333,0.0156994178395872,"Fkbp15","FK506 binding protein 15","chr5","-","ENSRNOT00000002083","coding",78133357,78222324,624,"5q24",362528,"ENSRNOT00000002083","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:5:82255154:82304918:-1 gene:ENSRNOG00000024663 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000002083","D4AE06",{"$nulls":3},"ENSRNOT00000002083","GO:0000413","protein peptidyl-prolyl isomerization","inferred from electronic annotation","ENSRNOT00000002083","GO:0005884","actin filament","inferred from electronic annotation","ENSRNOT00000002083","GO:0003755","peptidyl-prolyl cis-trans isomerase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002083","Pfam","IPR001179","Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain","Coding",8.19,8.01,8.23,7.11,7.21,7.14]
["TC0500003590.rn.1",4.29,3.91,1.301,"up",0.00957347375745158,0.0157885514706818,"Zc3h12a","zinc finger CCCH type containing 12A","chr5","-","NM_001077671","coding",143111339,143120131,100,"5q36",313587,"NM_001077671","RefSeq","Rattus norvegicus zinc finger CCCH type containing 12A (Zc3h12a), mRNA.","chr5",100,100,"NM_001077671","A0JPN4","NM_001077671","Rn.234344","heart| nerve| ovary| placenta| juvenile| adult","NM_001077671","GO:0001525","angiogenesis","inferred from electronic annotation","NM_001077671","GO:0005634","nucleus","inferred from electronic annotation","NM_001077671","GO:0004519","endonuclease activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000012314","Pfam","IPR021869","Ribonuclease Zc3h12a-like","Coding",4.27,4.24,4.36,3.93,3.94,3.85]
["TC0800002616.rn.1",4.92,4.42,1.414,"up",0.00972043434748752,0.0159566452072479,"Odf3l1","outer dense fiber of sperm tails 3-like 1","chr8","-","NM_001108151","coding",61516249,61519519,56,"8q24",315695,"NM_001108151","RefSeq","Rattus norvegicus outer dense fiber of sperm tails 3-like 1 (Odf3l1), mRNA.","chr8",100,100,"NM_001108151","D4A5D6","NM_001108151","Rn.76080","connective tissue| heart| adult",{"$nulls":15},"ENSRNOT00000038347","Pfam","IPR010736","Sperm-tail PG-rich repeat","Coding",5.23,4.71,4.81,4.33,4.39,4.53]
["TC1900000185.rn.1",15.13,14.38,1.682,"up",0.00978732459464171,0.0160195623794894,null,null,"chr19","+",null,"coding",17124649,17142719,30,null,"NA","ENSRNOT00000072324","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:19:28191739:28209809:1 gene:ENSRNOG00000046175 gene_biotype:protein_coding transcript_biotype:protein_coding","chr19",100,100,"ENSRNOT00000072324","M0R9R9",{"$nulls":22},"Coding",14.98,15.15,15.26,14.19,14.4,14.55]
["TC0300004415.rn.1",9.17,9.53,-1.283,"down",0.00985706981349376,0.0160942907914466,"LOC102554315","zinc finger protein 120","chr3","-","ENSRNOT00000008047","coding",145583450,145663884,130,null,"NA","ENSRNOT00000008047","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:3:152003144:152005643:-1 gene:ENSRNOG00000006112 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000008047","F1LXV7",{"$nulls":3},"ENSRNOT00000008047","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000008047","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000008047","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008047","Pfam","IPR001909","Krueppel-associated box","Coding",9.07,9.22,9.22,9.43,9.71,9.46]
["TC0700002270.rn.1",7.35,7.7,-1.275,"down",0.0100284022867501,0.0162928709430542,"LOC691422","similar to zinc finger protein 101","chr7","-","ENSRNOT00000009270","coding",15849774,15865460,100,"7q11",691422,"ENSRNOT00000009270","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:7:16022123:16036263:-1 gene:ENSRNOG00000007076 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000009270","F1M5G7","ENSRNOT00000009270","Rn.167657","colon| embryonic tissue| ovary| pancreas| prostate| metamorphosing embryo| fetus","ENSRNOT00000009270","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000009270","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000009270","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009270","Pfam","IPR001909","Krueppel-associated box","Coding",7.39,7.17,7.49,7.56,7.85,7.7]
["TC0200001288.rn.1",5.29,5.73,-1.357,"down",0.0102073718560292,0.016498767703646,"Lekr1","leucine, glutamate and lysine rich 1","chr2","+","NM_001115029","coding",157451992,157621908,237,"2q31",361953,"NM_001115029","RefSeq","Rattus norvegicus leucine, glutamate and lysine rich 1 (Lekr1), mRNA.","chr2",100,100,"NM_001115029","B0BMZ8","NM_001115029","Rn.198594","prostate| testis| adult",{"$nulls":19},"Coding",5.29,5.29,5.28,5.63,5.53,6.03]
["TC1900001717.rn.1",10.28,9.34,1.919,"up",0.0102674103261997,0.0165680617534988,"Irf2bp2","interferon regulatory factor 2 binding protein 2","chr19","-","ENSRNOT00000075292","coding",59499348,59502161,30,null,679357,"ENSRNOT00000075292","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:19:70172659:70174944:-1 gene:ENSRNOG00000049900 gene_biotype:protein_coding transcript_biotype:protein_coding","chr19",100,100,"ENSRNOT00000075292","M0R9Z5",{"$nulls":7},"ENSRNOT00000075292","GO:0005634","nucleus","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000075292","Pfam","IPR022750","Interferon regulatory factor 2-binding protein 1 & 2, zinc finger","Coding",10.47,10.18,10.2,9.08,9.6,9.33]
["TC0400001682.rn.1",9.82,9.28,1.454,"up",0.0104655257859986,0.0167863941300629,"Kdm5a","lysine (K)-specific demethylase 5A","chr4","+","NM_001277177","coding",152891449,152972196,486,"4q42",312678,"NM_001277177","RefSeq","Rattus norvegicus lysine (K)-specific demethylase 5A (Kdm5a), transcript variant 1, mRNA.","chr4",100,100,"NM_001277177","B5DFF8","NM_001277177","Rn.134217","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001277177","GO:0045893","positive regulation of transcription, DNA-templated","inferred from electronic annotation","NM_001277177","GO:0005634","nucleus","not recorded","NM_001277177","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000056198","Pfam","IPR001606","ARID/BRIGHT DNA-binding domain","Coding",9.8,9.84,9.83,9.29,9.27,9.27]
["TC0600000869.rn.1",7.24,7.52,-1.214,"down",0.010504790175867,0.0168291718292895,"Fancm","similar to RIKEN cDNA C730036B14 gene","chr6","+","ENSRNOT00000006574","coding",86823782,86846535,110,"6q24",314172,"ENSRNOT00000006574","ENSEMBL","ensembl:known chromosome:Rnor_5.0:6:96312761:96335514:1 gene:ENSRNOG00000049286 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000006574","D3ZJ52","ENSRNOT00000006574","Rn.84253","brain| kidney| lung| pituitary gland| prostate| spleen| metamorphosing embryo| juvenile| adult","ENSRNOT00000006574","GO:0006259","DNA metabolic process","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000006574","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000006574","Pfam","IPR001650","Helicase, C-terminal","Coding",7.39,7.11,7.22,7.51,7.52,7.54]
["TC0X00002651.rn.1",8.52,10.83,-4.959,"down",0.0107355656266521,0.0170869993128618,"Atp2b3","ATPase, Ca++ transporting, plasma membrane 3","chrX","-","NM_133288","coding",157186441,157312028,312,null,29599,"NM_133288","RefSeq","Rattus norvegicus ATPase, Ca++ transporting, plasma membrane 3 (Atp2b3), mRNA.","chrX",100,100,"NM_133288","Q64568","NM_133288","Rn.11053","adrenal gland| brain| dorsal root ganglion| juvenile| adult","NM_133288","GO:0003407","neural retina development","inferred from expression pattern","NM_133288","GO:0005794","Golgi apparatus","not recorded","NM_133288","GO:0005388","calcium-transporting ATPase activity","inferred from electronic annotation","NM_133288","GenMAPP","Calcium_regulation_in_cardiac_cells","ENSRNOT00000023934","Pfam","IPR004014","Cation-transporting P-type ATPase, N-terminal","Coding",8.61,8.34,8.61,10.7,11,10.78]
["TC0900000244.rn.1",8.65,9.67,-2.028,"down",0.0108463755425443,0.0171893430845303,"Tmem63b","transmembrane protein 63B","chr9","+","ENSRNOT00000026728","coding",17698691,17725479,308,"9q12",363197,"ENSRNOT00000026728","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:9:16593695:16613274:1 gene:ENSRNOG00000019743 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000026728","D4A105",{"$nulls":7},"ENSRNOT00000026728","GO:0016020","membrane","inferred from electronic annotation","ENSRNOT00000026728","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000026728","Pfam","IPR003864","Domain of unknown function DUF221","Coding",8.65,8.53,8.77,9.63,9.81,9.57]
["TC1500000196.rn.1",12.14,12.68,-1.454,"down",0.0109021813252474,0.0172526001458388,"Psmc6","proteasome (prosome, macropain) 26S subunit, ATPase, 6","chr15","+","NM_001100509","coding",19667453,19688916,210,"15p14",289990,"NM_001100509","RefSeq","Rattus norvegicus proteasome (prosome, macropain) 26S subunit, ATPase, 6 (Psmc6), mRNA.","chr15",100,100,"NM_001100509","G3V6W6","NM_001100509","Rn.103233","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| placenta| prostate| spleen| testis| metamorphosing embryo| juvenile| adult","NM_001100509","GO:0030163","protein catabolic process","inferred from electronic annotation","NM_001100509","GO:0000502","proteasome complex","not recorded","NM_001100509","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009649","Pfam","IPR003959","ATPase, AAA-type, core","Coding",12.2,12.19,12.04,12.59,12.64,12.82]
["TC1400000921.rn.1",8.82,10.4,-2.99,"down",0.0109940710476035,0.0173553260785097,null,null,"chr14","+",null,"coding",85311370,85311510,30,null,"NA","ENSRNOT00000011954","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:85988991:85989131:1 gene:ENSRNOG00000046259 gene_biotype:protein_coding transcript_biotype:protein_coding","chr14",100,100,"ENSRNOT00000011954","D3ZZ71",{"$nulls":3},"ENSRNOT00000011954","GO:0007264","small GTPase mediated signal transduction","inferred from electronic annotation","ENSRNOT00000011954","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000011954","GO:0003924","GTPase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000011954","Pfam","IPR013684","Mitochondrial Rho-like","Coding",8.86,8.91,8.7,10.37,10.67,10.16]
["TC0400003885.rn.1",5.23,4.11,2.173,"up",0.0111043694169651,0.0174501538938032,"LOC502908","Ly49s8","chr4","-","ENSRNOT00000013510","coding",165094637,165118062,60,"4q42",502908,"ENSRNOT00000013510","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:213768369:213791758:-1 gene:ENSRNOG00000046201 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000013510","F7F6S5","ENSRNOT00000013510","Rn.145852",{"$nulls":9},"ENSRNOT00000013510","GO:0030246","carbohydrate binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000013510","Pfam","IPR001304","C-type lectin","Coding",5.84,4.92,4.92,4.37,3.85,4.11]
["TC0100001131.rn.1",8.07,10.99,-7.568,"down",0.0112644033101363,0.0176092467512939,"Ttc9b","tetratricopeptide repeat domain 9B","chr1","+","NM_001108478","coding",84470813,84473011,30,"1q21",361528,"NM_001108478","RefSeq","Rattus norvegicus tetratricopeptide repeat domain 9B (Ttc9b), mRNA.","chr1",100,100,"NM_001108478","D3ZTK0","NM_001108478","Rn.45506","brain| adult","NM_001108478","GO:0000413","protein peptidyl-prolyl isomerization","not recorded","NM_001108478","GO:0005789","endoplasmic reticulum membrane","not recorded","NM_001108478","GO:0003755","peptidyl-prolyl cis-trans isomerase activity","not recorded",{"$nulls":3},"ENSRNOT00000025472","Pfam","IPR013105","Tetratricopeptide TPR2","Coding",8.02,7.8,8.39,11.01,10.85,11.12]
["TC0800001189.rn.1",3.92,4.28,-1.283,"down",0.0113474683615763,0.0176897489822258,"Mei4","meiosis-specific 4 homolog (S. cerevisiae)","chr8","+","NM_001109378","coding",89369417,89556942,50,"8q31",679805,"NM_001109378","RefSeq","Rattus norvegicus meiosis-specific 4 homolog (S. cerevisiae) (Mei4), mRNA.","chr8",100,100,"NM_001109378","D3ZCK1","NM_001109378","Rn.218601",null,"NM_001109378","GO:0006310","DNA recombination","inferred from electronic annotation","NM_001109378","GO:0000800","lateral element","inferred from electronic annotation","ENSRNOT00000037530","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",3.92,3.98,3.86,4.38,4.41,4.04]
["TC0200000634.rn.1",7.84,10.9,-8.34,"down",0.011503570962939,0.0178625664786997,"Cdh12","cadherin 12","chr2","+","ENSRNOT00000034044","coding",71310264,72539066,160,"2q21",301887,"ENSRNOT00000034044","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:91863900:92268636:1 gene:ENSRNOG00000026392 gene_biotype:protein_coding transcript_biotype:protein_coding","chr2",100,100,"ENSRNOT00000034044","F1M1A2",{"$nulls":3},"ENSRNOT00000034044","GO:0007156","homophilic cell adhesion","inferred from electronic annotation","ENSRNOT00000034044","GO:0005886","plasma membrane","inferred from electronic annotation","ENSRNOT00000034044","GO:0005509","calcium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000034044","Pfam","IPR000233","Cadherin, cytoplasmic domain","Coding",8.21,7.51,7.81,10.89,10.89,10.91]
["TC0300004707.rn.1",6.12,5.8,1.248,"up",0.0116255546631183,0.0179846889974419,"Oser1","oxidative stress responsive serine-rich 1","chr3","-","NM_201560","coding",159784004,159802994,76,"3q42",296346,"NM_201560","RefSeq","Rattus norvegicus oxidative stress responsive serine-rich 1 (Oser1), mRNA.","chr3",100,100,"NM_201560","Q703I1","NM_201560","Rn.41273","brain| connective tissue| heart| lung| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus| juvenile| adult","NM_201560","GO:0070301","cellular response to hydrogen peroxide","inferred from direct assay",{"$nulls":11},"ENSRNOT00000011610","Pfam","IPR008494","Protein of unknown function DUF776","Coding",6.23,6.07,6.07,5.86,5.76,5.77]
["TC1400002344.rn.1",5.18,5.61,-1.347,"down",0.0117174139332247,0.0180862979770789,"Otx1","orthodenticle homeobox 1","chr14","-","NM_013109","coding",106861556,106865006,50,"14q22",25646,"NM_013109","RefSeq","Rattus norvegicus orthodenticle homeobox 1 (Otx1), mRNA.","chr14",100,100,"NM_013109","Q63410","NM_013109","Rn.33443",null,"NM_013109","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","NM_013109","GO:0005634","nucleus","inferred from electronic annotation","NM_013109","GO:0000978","RNA polymerase II core promoter proximal region sequence-specific DNA binding","not recorded",{"$nulls":7},"Coding",5.31,5.32,4.91,5.64,5.54,5.64]
["TC0300000247.rn.1",10.26,10.85,-1.505,"down",0.011865845794022,0.0182382599424234,"Prrc2b","proline-rich coiled-coil 2B","chr3","+","ENSRNOT00000013546","coding",11165687,11252401,383,"3p11",296637,"ENSRNOT00000013546","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:16556389:16597339:1 gene:ENSRNOG00000010217 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000013546","D3ZY45","ENSRNOT00000013546","Rn.225938","brain| connective tissue| embryonic tissue| eye| heart| kidney| lung| pancreas| pituitary gland| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":8},"ENSRNOT00000013546","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":7},"Coding",10.18,10.24,10.36,10.83,10.9,10.81]
["TC2000000724.rn.1",9.98,12.29,-4.959,"down",0.0120437670266836,0.0184246831369899,"Slc35f1","solute carrier family 35, member F1","chr20","+","NM_001109338","coding",33772314,34420969,90,"20q11",502421,"NM_001109338","RefSeq","Rattus norvegicus solute carrier family 35, member F1 (Slc35f1), mRNA.","chr20",100,100,"NM_001109338","D3ZFM3","NM_001109338","Rn.85970","brain| dorsal root ganglion| embryonic tissue| metamorphosing embryo| adult","NM_001109338","GO:0006810","transport","inferred from electronic annotation","NM_001109338","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000000468","Pfam","IPR000620","Drug/metabolite transporter","Coding",10.05,9.81,10.07,12.34,12.4,12.13]
["TC0600000243.rn.1",9.24,9.65,-1.329,"down",0.0122095381249603,0.0186029196358815,"Ypel5","yippee-like 5 (Drosophila)","chr6","+","NM_001035221","coding",24064674,24084764,241,"6q13",298792,"NM_001035221","RefSeq","Rattus norvegicus yippee-like 5 (Drosophila) (Ypel5), mRNA.","chr6",100,100,"NM_001035221","D4A4Q3","NM_001035221","Rn.1136","brain| colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| pancreas| placenta| prostate| spleen| testis| thymus| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":15},"ENSRNOT00000035362","Pfam","IPR004910","Yippee/Mis18","Coding",9.26,9.13,9.32,9.66,9.78,9.52]
["TC0100005665.rn.1",7.12,8.88,-3.387,"down",0.0123848777353882,0.0187991708442353,"Chrna7","cholinergic receptor, nicotinic, alpha 7 (neuronal)","chr1","-","NM_012832","coding",123900489,124039210,110,"1q22",25302,"NM_012832","RefSeq","Rattus norvegicus cholinergic receptor, nicotinic, alpha 7 (neuronal) (Chrna7), mRNA.","chr1",100,100,"NM_012832","Q05941","NM_012832","Rn.9698","adrenal gland| brain","NM_012832","GO:0000187","activation of MAPK activity","inferred from electronic annotation","NM_012832","GO:0005737","cytoplasm","inferred from direct assay","NM_012832","GO:0001540","beta-amyloid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051883","Pfam","IPR006029","Neurotransmitter-gated ion-channel transmembrane domain","Coding",7.01,7.18,7.18,8.85,8.96,8.84]
["TC1500000739.rn.1",6.48,4.73,3.364,"up",0.0125399901104352,0.0189340691686997,"Scara5","scavenger receptor class A, member 5 (putative)","chr15","+","NM_001135855","coding",49069149,49177159,117,"15p12",305974,"NM_001135855","RefSeq","Rattus norvegicus scavenger receptor class A, member 5 (putative) (Scara5), mRNA.","chr15",100,100,"NM_001135855","D4A213","NM_001135855","Rn.163284","adipose tissue| dorsal root ganglion| heart| lung| juvenile| adult","NM_001135855","GO:0006879","cellular iron ion homeostasis","inferred from electronic annotation","NM_001135855","GO:0005887","integral component of plasma membrane","inferred from electronic annotation","NM_001135855","GO:0005044","scavenger receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019487","Pfam","IPR001190","SRCR domain","Coding",6.91,6.32,6.2,4.76,4.61,4.82]
["TC1400001052.rn.1",13.07,14.26,-2.282,"down",0.0127002493496846,0.0191026090097299,"Ppp3r1","protein phosphatase 3, regulatory subunit B, alpha","chr14","+","NM_017309","coding",100311207,100360874,127,"14q22",29748,"NM_017309","RefSeq","Rattus norvegicus protein phosphatase 3, regulatory subunit B, alpha (Ppp3r1), mRNA.","chr14",100,100,"NM_017309","P63100","NM_017309","Rn.42903","brain| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_017309","GO:0001569","patterning of blood vessels","not recorded","NM_017309","GO:0005622","intracellular","not recorded","NM_017309","GO:0004721","phosphoprotein phosphatase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000031275","Pfam","IPR002048","EF-hand domain","Coding",13.09,13.14,12.98,14.15,14.3,14.32]
["TC0700002732.rn.1",7.7,9.45,-3.364,"down",0.0128332817279753,0.0192194962407672,"Kcnmb4","potassium large conductance calcium-activated channel, subfamily M, beta member 4","chr7","-","NM_023960","coding",59461798,59514939,50,"7q22",66016,"NM_023960","RefSeq","Rattus norvegicus potassium large conductance calcium-activated channel, subfamily M, beta member 4 (Kcnmb4), mRNA.","chr7",100,100,"NM_023960","Q9ESK8","NM_023960","Rn.162953","heart| lung|tailbud embryo| adult","NM_023960","GO:0001508","action potential","not recorded","NM_023960","GO:0005887","integral component of plasma membrane","not recorded","NM_023960","GO:0015269","calcium-activated potassium channel activity","inferred from electronic annotation",{"$nulls":7},"Coding",7.73,7.65,7.73,9.45,9.61,9.28]
["TC0300002267.rn.1",4.24,4.56,-1.248,"down",0.0129810116748912,0.0193755932122818,"Kcnk15","potassium channel, subfamily K, member 15","chr3","+","NM_130813","coding",160231914,160238279,30,"3q42",156873,"NM_130813","RefSeq","Rattus norvegicus potassium channel, subfamily K, member 15 (Kcnk15), mRNA.","chr3",100,100,"NM_130813","Q8R5I0","NM_130813","Rn.161865",null,"NM_130813","GO:0034765","regulation of ion transmembrane transport","inferred from electronic annotation","NM_130813","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_130813","GO:0005244","voltage-gated ion channel activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000014411","Pfam","IPR013099","Two pore domain potassium channel domain","Coding",4.22,4.32,4.19,4.76,4.49,4.43]
["TC1700001100.rn.1",4.68,4.38,1.231,"up",0.0130428299145568,0.0194268827238414,"Armc3","armadillo repeat containing 3","chr17","+","NM_001287020","coding",85895826,86009403,284,"17q12.3",100361506,"NM_001287020","RefSeq","Rattus norvegicus armadillo repeat containing 3 (Armc3), mRNA.","chr17",100,100,"ENSRNOT00000022475","D3ZPL8","ENSRNOT00000022475","Rn.233308","testis",{"$nulls":4},"NM_001287020","GO:0070062","extracellular vesicular exosome","not recorded","ENSRNOT00000022475","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022475","Pfam","IPR000225","Armadillo","Coding",4.65,4.72,4.68,4.41,4.38,4.35]
["TC1000004097.rn.1",6,4.76,2.362,"up",0.0131290333710402,0.0195177097722156,"RGD1559458","similar to Immunoglobulin superfamily, member 7","chr10","-","ENSRNOT00000075199","coding",103495359,103498569,43,"10q32.2",363701,"ENSRNOT00000075199","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:103149597:103152459:-1 gene:ENSRNOG00000050974 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000075199","M0R3P5",{"$nulls":11},"ENSRNOT00000075199","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000075199","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",6.49,5.78,5.72,4.77,4.77,4.75]
["TC0800002016.rn.1",3.67,3.37,1.231,"up",0.0133108364727563,0.0197109526118743,"Olr1135","olfactory receptor 1135 (Olr1135), mRNA","chr8","-","NM_001000878_2","coding",19081540,19082478,30,null,"NA","NM_001000878_2","RefSeq","olfactory receptor 1135 (Olr1135), mRNA","chr8",100,100,"ENSRNOT00000073314","M0R8T8","ENSRNOT00000073314","Rn.143604",null,"ENSRNOT00000073314","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","ENSRNOT00000073314","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000073314","GO:0004984","olfactory receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073314","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",3.74,3.49,3.79,3.41,3.39,3.31]
["TC0900000709.rn.1",7.04,7.35,-1.24,"down",0.0134996396662817,0.0198899271113638,"Ndufb3","NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3","chr9","+","NM_001106912","coding",65478441,65488722,60,"9q31",301427,"NM_001106912","RefSeq","Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 (Ndufb3), mRNA.","chr9",100,100,"NM_001106912","D4A4P3","NM_001106912","Rn.17057","adrenal gland| connective tissue| eye| heart| kidney| pancreas| small intestine| adult","NM_001106912","GO:0022900","electron transport chain","inferred from electronic annotation","NM_001106912","GO:0005739","mitochondrion","not recorded","ENSRNOT00000016060","GO:0008137","NADH dehydrogenase (ubiquinone) activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016060","Pfam","IPR012576","NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3","Coding",7.14,6.96,7.02,7.39,7.28,7.39]
["TC1300001434.rn.1",7.02,8.05,-2.042,"down",0.0135539650286088,0.019936149577643,"Btg2","BTG family, member 2","chr13","-","NM_017259","coding",50913164,50916946,56,"13q13-q31",29619,"NM_017259","RefSeq","Rattus norvegicus BTG family, member 2 (Btg2), mRNA.","chr13",100,100,"NM_017259","P27049","NM_017259","Rn.27923","adipose tissue| brain| colon| connective tissue| embryonic tissue| eye| heart| kidney| liver| lung| muscle| placenta| prostate| small intestine| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_017259","GO:0006351","transcription, DNA-templated","inferred from electronic annotation","NM_017259","GO:0070062","extracellular vesicular exosome","not recorded","NM_017259","GO:0001077","RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription","inferred from direct assay",{"$nulls":3},"ENSRNOT00000004408","Pfam","IPR002087","Anti-proliferative protein","Coding",7.76,6.47,6.84,7.77,8.21,8.16]
["TC0500001247.rn.1",9.4,10.01,-1.526,"down",0.0137266977433041,0.0201040401698642,"Atpaf1","ATP synthase mitochondrial F1 complex assembly factor 1","chr5","+","NM_001107959","coding",134641305,134667088,169,"5q36",313510,"NM_001107959","RefSeq","Rattus norvegicus ATP synthase mitochondrial F1 complex assembly factor 1 (Atpaf1), mRNA.","chr5",100,100,"NM_001107959","D3ZY50","NM_001107959","Rn.18579","brain| colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| prostate| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001107959","GO:0006461","protein complex assembly","inferred from electronic annotation","NM_001107959","GO:0005739","mitochondrion","inferred from electronic annotation","ENSRNOT00000013533","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000013533","Pfam","IPR010591","ATP11","Coding",9.45,9.38,9.36,9.86,10.11,10.07]
["TC1500000638.rn.1",7.62,8.06,-1.357,"down",0.0139550553411425,0.0203435100982701,"Ccdc25","coiled-coil domain containing 25","chr15","+","NM_001108382","coding",42521461,42555318,168,"15p12",361059,"NM_001108382","RefSeq","Rattus norvegicus coiled-coil domain containing 25 (Ccdc25), mRNA.","chr15",100,100,"NM_001108382","D4AAU6","NM_001108382","Rn.136803","adrenal gland| connective tissue| dorsal root ganglion| embryonic tissue| eye| liver| prostate| small intestine| spleen| testis| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_001108382","GO:0070062","extracellular vesicular exosome","not recorded",{"$nulls":7},"ENSRNOT00000021621","Pfam","IPR008532","Domain of unknown function DUF814","Coding",7.66,7.67,7.52,8,8.06,8.12]
["TC0X00000126.rn.1",8.87,10.11,-2.362,"down",0.0140668129226446,0.0204518676700784,"Wdr13","WD repeat domain 13","chrX","+","NM_001108247","coding",15112669,15123830,130,"Xq13",317370,"NM_001108247","RefSeq","Rattus norvegicus WD repeat domain 13 (Wdr13), mRNA.","chrX",100,100,"NM_001108247","B2RZ63","NM_001108247","Rn.107767","brain| colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| pancreas| spleen| testis| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_001108247","GO:0005634","nucleus","not recorded","ENSRNOT00000007464","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007464","Pfam","IPR001680","WD40 repeat","Coding",8.77,8.79,9.06,10.13,10.09,10.12]
["TC0300002560.rn.1",14.62,14.24,1.301,"up",0.0143278605328705,0.0207373158903927,"Rps21","ribosomal protein S21","chr3","+","NM_031111","coding",175629024,175630212,70,"3q43",81775,"NM_031111","RefSeq","Rattus norvegicus ribosomal protein S21 (Rps21), mRNA.","chr3",100,100,"NM_031111","P05765","NM_031111","Rn.4153","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| kidney| liver| lung| ovary| pancreas| pituitary gland| placenta| prostate| vibrissa| juvenile| adult","NM_031111","GO:0000447","endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)","not recorded","NM_031111","GO:0022627","cytosolic small ribosomal subunit","inferred from direct assay","NM_031111","GO:0003735","structural constituent of ribosome","not recorded","NM_031111","GenMAPP","Ribosomal_Proteins","ENSRNOT00000008458","Pfam","IPR001931","Ribosomal protein S21e","Coding",14.78,14.48,14.61,14.41,14.29,14.03]
["TC0200000299.rn.1",11.01,14.02,-8.056,"down",0.0144583680486997,0.0208601587519902,"Sgtb","small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta","chr2","+","NM_181629","coding",34185948,34222533,147,"2q13",294708,"NM_181629","RefSeq","Rattus norvegicus small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta (Sgtb), mRNA.","chr2",100,100,"NM_181629","Q80W98","NM_181629","Rn.23400","brain| dorsal root ganglion| eye| heart| lung| muscle| ovary| prostate|tailbud embryo| adult","NM_181629","GO:0006457","protein folding","traceable author statement",{"$nulls":4},"NM_181629","GO:0008022","protein C-terminus binding","traceable author statement",{"$nulls":3},"ENSRNOT00000016129","Pfam","IPR001440","Tetratricopeptide TPR1","Coding",11.16,11.08,10.79,13.76,14.04,14.25]
["TC1300000322.rn.1",5.51,4.94,1.485,"up",0.0145977582831816,0.0209967424970727,"Ube2t","ubiquitin-conjugating enzyme E2T (putative)","chr13","+","NM_001108344","coding",51790801,51801379,110,"13q13",360847,"NM_001108344","RefSeq","Rattus norvegicus ubiquitin-conjugating enzyme E2T (putative) (Ube2t), mRNA.","chr13",100,100,"NM_001108344","B2RZ36","NM_001108344","Rn.18835","brain| connective tissue| eye| heart| spleen| juvenile| adult","NM_001108344","GO:0006281","DNA repair","inferred from electronic annotation",{"$nulls":4},"NM_001108344","GO:0003682","chromatin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000006747","Pfam","IPR000608","Ubiquitin-conjugating enzyme, E2","Coding",5.46,5.61,5.46,4.74,5.03,5.06]
["TC0X00002451.rn.1",9.98,9.62,1.283,"up",0.0148524304623013,0.0212697089497639,"Zfp280c","zinc finger protein 280C","chrX","-","ENSRNOT00000044435","coding",135364986,135428907,210,"Xq35",302812,"ENSRNOT00000044435","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:135436456:135501067:-1 gene:ENSRNOG00000006797 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000044435","D3ZZ25",{"$nulls":11},"ENSRNOT00000044435","GO:0046872","metal ion binding","inferred from electronic annotation",{"$nulls":7},"Coding",9.88,9.88,10.19,9.54,9.65,9.67]
["TC0100001822.rn.1",5.28,4.88,1.32,"up",0.0149601093688453,0.0213921682454899,"Isg20","interferon stimulated exonuclease gene 20","chr1","+","NM_001008510","coding",140602260,140608892,54,"1q31",293052,"NM_001008510","RefSeq","Rattus norvegicus interferon stimulated exonuclease gene 20 (Isg20), mRNA.","chr1",100,100,"NM_001008510","F6TAL3","NM_001008510","Rn.16103","connective tissue| ovary| pancreas| placenta| adult","NM_001008510","GO:0000738","DNA catabolic process, exonucleolytic","not recorded","NM_001008510","GO:0005634","nucleus","not recorded","NM_001008510","GO:0000175","3'-5'-exoribonuclease activity","not recorded",{"$nulls":3},"ENSRNOT00000024826","Pfam","IPR013520","Exonuclease, RNase T/DNA polymerase III","Coding",5.23,5.23,5.38,4.7,5.09,4.85]
["TC1200001751.rn.1",6.99,7.47,-1.395,"down",0.0150686058565586,0.0215030602426912,"Coq5","coenzyme Q5 homolog, methyltransferase (S. cerevisiae)","chr12","-","NM_001039022","coding",47078571,47095454,90,"12q16",304542,"NM_001039022","RefSeq","Rattus norvegicus coenzyme Q5 homolog, methyltransferase (S. cerevisiae) (Coq5), mRNA.","chr12",100,100,"NM_001039022","Q4G064","NM_001039022","Rn.143996","brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| pituitary gland| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001039022","GO:0006744","ubiquinone biosynthetic process","inferred from electronic annotation","NM_001039022","GO:0005739","mitochondrion","inferred from electronic annotation","NM_001039022","GO:0008168","methyltransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000001546","Pfam","IPR004033","UbiE/COQ5 methyltransferase","Coding",7.02,6.86,7.1,7.45,7.65,7.32]
["TC0400003678.rn.1",8.27,10.34,-4.199,"down",0.0152099947346488,0.0216461427605755,"Iqsec3","IQ motif and Sec7 domain 3","chr4","-","NM_207617","coding",153947368,154044493,180,"4q42",404781,"NM_207617","RefSeq","Rattus norvegicus IQ motif and Sec7 domain 3 (Iqsec3), mRNA.","chr4",100,100,"NM_207617","Q76M68","NM_207617","Rn.26766","brain| dorsal root ganglion| eye| pituitary gland| spleen| juvenile| adult","NM_207617","GO:0016192","vesicle-mediated transport","not recorded","NM_207617","GO:0005634","nucleus","not recorded","NM_207617","GO:0005086","ARF guanyl-nucleotide exchange factor activity","not recorded",{"$nulls":3},"ENSRNOT00000018902","Pfam","IPR000904","Sec7 domain","Coding",8.35,8.26,8.19,10.35,10.35,10.32]
["TC0200002318.rn.1",5.4,4.61,1.729,"up",0.0154482417760964,0.021883014587994,"Gbp4","guanylate binding protein 4","chr2","+","ENSRNOT00000022648","coding",248249470,248263104,141,"2q44",310917,"ENSRNOT00000022648","ENSEMBL","ensembl:known chromosome:Rnor_5.0:2:266777909:266791110:1 gene:ENSRNOG00000028768 gene_biotype:protein_coding transcript_biotype:protein_coding","chr2",100,100,"ENSRNOT00000022648","D3ZQL3","ENSRNOT00000022648","Rn.198179","prostate","ENSRNOT00000022648","GO:0006184","GTP catabolic process","inferred from electronic annotation","ENSRNOT00000022648","GO:0005829","cytosol","not recorded","ENSRNOT00000022648","GO:0003924","GTPase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022648","Pfam","IPR003191","Guanylate-binding protein, C-terminal","Coding",5.28,5.21,5.7,4.55,4.77,4.52]
["TC1300002140.rn.1",9.33,9.87,-1.454,"down",0.0154679672677905,0.0219073835637007,"Iars2","isoleucyl-tRNA synthetase 2, mitochondrial","chr13","-","ENSRNOT00000057395","coding",103231198,103265013,250,"13q26",364070,"ENSRNOT00000057395","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:107928811:107937935:-1 gene:ENSRNOG00000002368 gene_biotype:protein_coding transcript_biotype:protein_coding","chr13",100,100,"ENSRNOT00000057395","D4A8P9",{"$nulls":3},"ENSRNOT00000057395","GO:0006428","isoleucyl-tRNA aminoacylation","inferred from electronic annotation","ENSRNOT00000057395","GO:0005737","cytoplasm","not recorded","ENSRNOT00000057395","GO:0002161","aminoacyl-tRNA editing activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000057395","Pfam","IPR002300","Aminoacyl-tRNA synthetase, class Ia","Coding",9.37,9.16,9.47,10.07,10.06,9.47]
["TC1800001691.rn.1",6.98,7.82,-1.79,"down",0.015669155771306,0.022104637790308,"LOC102553240","collagen alpha-1(I) chain-like","chr18","-","mRNARGD7749093_1","coding",69944183,70045072,30,null,"NA","mRNARGD7749093_1","Rat Genome Database","collagen alpha-1(I) chain-like","chr18",100,100,{"$nulls":24},"Coding",6.98,6.93,7.02,8.12,7.14,8.2]
["TC0100006472.rn.1",12.2,12.5,-1.231,"down",0.0157790231401243,0.0221995149402364,"RGD1311703","similar to sid2057p","chr1","-","NM_001013898","coding",185557488,185569191,100,"1q34",293160,"NM_001013898","RefSeq","Rattus norvegicus similar to sid2057p (RGD1311703), mRNA.","chr1",100,100,"NM_001013898","G3V8R0","NM_001013898","Rn.20471","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| juvenile| adult",{"$nulls":19},"Coding",12.19,12.09,12.32,12.52,12.63,12.34]
["TC0500003841.rn.1",6.88,7.88,-2,"down",0.0159928704318367,0.0223249980603915,"Nipal3","NIPA-like domain containing 3","chr5","-","ENSRNOT00000025075","coding",153804474,153844121,190,"5q36",502990,"ENSRNOT00000025075","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:157577172:157606377:-1 gene:ENSRNOG00000037165 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000025075","D3ZZI0",{"$nulls":3},"ENSRNOT00000025075","GO:0015693","magnesium ion transport","inferred from electronic annotation","ENSRNOT00000025075","GO:0016020","membrane","inferred from electronic annotation","ENSRNOT00000025075","GO:0015095","magnesium ion transmembrane transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025075","Pfam","IPR008521","Magnesium transporter NIPA","Coding",6.85,6.84,6.94,8.04,8,7.59]
["TC0200000364.rn.1",13.42,14.59,-2.25,"down",0.0162216843789947,0.0225393440527529,"Plk2","polo-like kinase 2","chr2","+","NM_031821","coding",41909715,41916904,160,"2q14",83722,"NM_031821","RefSeq","Rattus norvegicus polo-like kinase 2 (Plk2), mRNA.","chr2",100,100,"NM_031821","Q9R012","NM_031821","Rn.12100","adipose tissue| adrenal gland| brain| colon| eye| heart| kidney| liver| lung| pancreas| pituitary gland| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_031821","GO:0000082","G1/S transition of mitotic cell cycle","not recorded","NM_031821","GO:0005622","intracellular","inferred from direct assay","NM_031821","GO:0004674","protein serine/threonine kinase activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000016768","Pfam","IPR000719","Protein kinase domain","Coding",13.42,13.53,13.31,14.59,14.61,14.56]
["TC1400002102.rn.1",5.13,5.54,-1.329,"down",0.0164033905543141,0.0227300013815404,"RGD1560394","RGD1560394","chr14","-","NM_001106014","coding",82053684,82055290,60,"14q21",289728,"NM_001106014","RefSeq","Rattus norvegicus RGD1560394 (RGD1560394), mRNA.","chr14",100,100,"NM_001106014","D3ZT05","NM_001106014","Rn.101945","dorsal root ganglion| eye| kidney| adult",{"$nulls":19},"Coding",5.15,5.02,5.21,5.84,5.5,5.29]
["TC1600000797.rn.1",11.07,10.44,1.548,"up",0.0165827955064388,0.0229128015226176,"Hook3","hook microtubule-tethering protein 3","chr16","+","NM_001136098","coding",70710347,70831164,337,"16q12.4",306548,"NM_001136098","RefSeq","Rattus norvegicus hook microtubule-tethering protein 3 (Hook3), mRNA.","chr16",100,100,"NM_001136098","Q7TQ77","NM_001136098","Rn.203282","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| heart| liver| ovary| prostate| adult","NM_001136098","GO:0007032","endosome organization","inferred from electronic annotation","NM_001136098","GO:0000242","pericentriolar material","inferred from electronic annotation","NM_001136098","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000019281","Pfam","IPR008636","Hook-related protein family","Coding",10.96,11.24,11,10.24,10.54,10.54]
["TC1000002620.rn.1",7.91,8.23,-1.248,"down",0.0167667828979457,0.0230862227108604,"Ttc1","tetratricopeptide repeat domain 1","chr10","-","NM_001005529","coding",29342463,29367919,108,"10q21",287208,"NM_001005529","RefSeq","Rattus norvegicus tetratricopeptide repeat domain 1 (Ttc1), mRNA.","chr10",100,100,"NM_001005529","Q66H09","NM_001005529","Rn.81253","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus| juvenile| adult",{"$nulls":4},"NM_001005529","GO:0005778","peroxisomal membrane","inferred from electronic annotation","NM_001005529","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000005304","Pfam","IPR001440","Tetratricopeptide TPR1","Coding",7.92,8.02,7.79,8.09,8.37,8.23]
["TC0300004366.rn.1",8.56,9.1,-1.454,"down",0.0168720012991058,0.0231778200527297,"LOC366215","similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)","chr3","-","LOC366215.aSep08-unspliced","coding",141846488,141848048,30,null,"NA","LOC366215.aSep08-unspliced","Ace View","similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)","chr3",100,100,"ENSRNOT00000066912","F1M6P0",{"$nulls":3},"ENSRNOT00000066912","GO:0006096","glycolytic process","inferred from electronic annotation","ENSRNOT00000066912","GO:0000015","phosphopyruvate hydratase complex","inferred from electronic annotation","ENSRNOT00000066912","GO:0000287","magnesium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000066912","Pfam","IPR020810","Enolase, C-terminal","Coding",8.56,8.5,8.61,9.17,9.45,8.67]
["TC1100001312.rn.1",6.84,7.3,-1.376,"down",0.0170653118120955,0.0233605006110204,"Dnajc28","DnaJ (Hsp40) homolog, subfamily C, member 28","chr11","-","NM_001014124","coding",31768417,31773030,41,"11q11",360699,"NM_001014124","RefSeq","Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 28 (Dnajc28), mRNA.","chr11",100,100,"NM_001014124","Q6AYG2","NM_001014124","Rn.103040","brain| prostate| testis| juvenile| adult",{"$nulls":15},"ENSRNOT00000002771","Pfam","IPR001623","DnaJ domain","Coding",6.96,6.75,6.81,7.39,7.25,7.26]
["TC0100004923.rn.1",7.13,7.72,-1.505,"down",0.0172437908750134,0.0235318334489296,"Mark4","MAP/microtubule affinity-regulating kinase 4","chr1","-","NM_001191071","coding",80335470,80367351,240,"1q21",680407,"NM_001191071","RefSeq","Rattus norvegicus MAP/microtubule affinity-regulating kinase 4 (Mark4), mRNA.","chr1",100,100,"NM_001191071","D4A6T9","NM_001191071","Rn.98278","brain| eye| heart| nerve| ovary| pancreas| pituitary gland| prostate| juvenile| adult","NM_001191071","GO:0000226","microtubule cytoskeleton organization","not recorded","NM_001191071","GO:0005813","centrosome","inferred from electronic annotation","NM_001191071","GO:0004674","protein serine/threonine kinase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000023392","Pfam","IPR000449","Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal","Coding",7.19,7.03,7.17,7.74,7.7,7.72]
["TC0100003202.rn.1",6,5.06,1.919,"up",0.0173991507361072,0.0236921413684188,"Cyb561a3","cytochrome b561 family, member A3","chr1","+","NM_001014164","coding",226620933,226642246,210,"1q43",361729,"NM_001014164","RefSeq","Rattus norvegicus cytochrome b561 family, member A3 (Cyb561a3), mRNA.","chr1",100,100,"NM_001014164","Q5U2W7","NM_001014164","Rn.203831","brain| connective tissue| eye| liver| lung| placenta| prostate| spleen| testis| thymus| juvenile| adult","NM_001014164","GO:0055114","oxidation-reduction process","inferred from electronic annotation","NM_001014164","GO:0005764","lysosome","not recorded","NM_001014164","GO:0016491","oxidoreductase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000028094","Pfam","IPR004877","Cytochrome b561, eukaryote","Coding",5.91,5.91,6.19,5.22,5.12,4.83]
["TC0800000970.rn.1",11.06,12.15,-2.129,"down",0.0176827499535998,0.0239566751152963,"Herc1","HECT and RLD domain containing E3 ubiquitin protein ligase family member 1","chr8","+","Herc1.aSep08","coding",72130971,72198361,571,null,"NA","Herc1.aSep08","Ace View","HECT and RLD domain containing E3 ubiquitin protein ligase family member 1","chr8",100,100,{"$nulls":24},"Coding",11.08,11.07,11.03,12.03,12.15,12.28]
["TC1200001871.rn.1",9.35,8.85,1.414,"up",0.0178519988787041,0.0241215831146522,"Ankle2","ankyrin repeat and LEM domain containing 2","chr12","-","NM_001047901","coding",52475860,52507126,200,"12q16",360829,"NM_001047901","RefSeq","Rattus norvegicus ankyrin repeat and LEM domain containing 2 (Ankle2), mRNA.","chr12",100,100,"NM_001047901","Q7TP65","NM_001047901","Rn.202689","brain| embryonic tissue| ovary| pancreas| prostate| adult","NM_001047901","GO:0007067","mitotic nuclear division","inferred from electronic annotation","NM_001047901","GO:0030176","integral component of endoplasmic reticulum membrane","not recorded","NM_001047901","GO:0051721","protein phosphatase 2A binding","not recorded",{"$nulls":3},"ENSRNOT00000056669","Pfam","IPR003887","LEM domain","Coding",9.26,9.36,9.43,8.74,8.88,8.92]
["TC0600001170.rn.1",5.53,5.83,-1.231,"down",0.0179917095295734,0.0242556450320698,"Lin52","lin-52 homolog (C. elegans)","chr6","+","ENSRNOT00000064426","coding",108167251,108264466,170,"6q31",362763,"ENSRNOT00000064426","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:117298279:117378681:-1 gene:ENSRNOG00000043441 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000064426","D4A6T8",{"$nulls":3},"ENSRNOT00000064426","GO:0006351","transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000064426","GO:0070176","DRM complex","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000064426","Pfam","IPR018737","Protein LIN52","Coding",5.54,5.52,5.54,5.9,5.74,5.85]
["TC1200000298.rn.1",7.55,7.1,1.366,"up",0.0182333932365221,0.0244658156070582,"LOC498154","hypothetical protein LOC498154","chr12","+","NM_001025033","coding",17277619,17380504,101,"12q11",498154,"NM_001025033","RefSeq","Rattus norvegicus hypothetical protein LOC498154 (LOC498154), mRNA.","chr12",100,100,"NM_001025033","Q5I0E3","NM_001025033","Rn.11782","brain| connective tissue| embryonic tissue| eye| liver| lung| pancreas| pituitary gland| placenta| prostate| spleen| juvenile| adult",{"$nulls":8},"NM_001025033","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":3},"ENSRNOT00000001734","Pfam","IPR019327","Protein of unknown function DUF2373","Coding",7.68,7.48,7.48,6.99,7.31,6.99]
["TC1200000341.rn.1",4.73,3.9,1.778,"up",0.0182349097091615,0.0244658156070582,"RGD1559588","similar to cell surface receptor FDFACT","chr12","+","ENSRNOT00000072303","coding",19714188,20064536,198,"12q11",304349,"ENSRNOT00000072303","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:21770511:22118689:1 gene:ENSRNOG00000049331 gene_biotype:protein_coding transcript_biotype:protein_coding","chr12",100,100,"ENSRNOT00000072303","M0R9X6",{"$nulls":22},"Coding",5.33,4.38,4.49,3.96,3.81,3.92]
["TC1600001928.rn.1",9.8,10.5,-1.625,"down",0.0184112850731724,0.0246301450139452,"Alg11","ALG11, alpha-1,2-mannosyltransferase","chr16","-","NM_001108401","coding",74853771,74865689,143,"16q12.5",361174,"NM_001108401","RefSeq","Rattus norvegicus ALG11, alpha-1,2-mannosyltransferase (Alg11), mRNA.","chr16",100,100,"NM_001108401","D3ZCQ2","NM_001108401","Rn.37199","brain| heart| liver| lung| pancreas| pituitary gland| placenta| thymus|tailbud embryo| adult","NM_001108401","GO:0009058","biosynthetic process","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000017164","Pfam","IPR001296","Glycosyl transferase, family 1","Coding",9.92,9.64,9.83,10.55,10.52,10.42]
["TC0100000162.rn.1",8.19,8.51,-1.248,"down",0.0185772652549714,0.024787285870198,"Map3k5","mitogen-activated protein kinase kinase kinase 5","chr1","+","NM_001277694","coding",15412603,15614485,328,"1p12",365057,"NM_001277694","RefSeq","Rattus norvegicus mitogen-activated protein kinase kinase kinase 5 (Map3k5), mRNA.","chr1",100,100,"NM_001277694","D3ZW27","NM_001277694","Rn.232064","pancreas| adult","NM_001277694","GO:0000165","MAPK cascade","inferred from direct assay","NM_001277694","GO:0005622","intracellular","not recorded","NM_001277694","GO:0000287","magnesium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051496","Pfam","IPR000719","Protein kinase domain","Coding",8.04,8.27,8.27,8.37,8.48,8.69]
["TC0500001692.rn.1",6.42,6.11,1.24,"up",0.0188880436645442,0.02507109006693,"Hmgcl","3-hydroxymethyl-3-methylglutaryl-CoA lyase","chr5","+","NM_024386","coding",154294837,154308644,120,"5q36",79238,"NM_024386","RefSeq","Rattus norvegicus 3-hydroxymethyl-3-methylglutaryl-CoA lyase (Hmgcl), mRNA.","chr5",100,100,"NM_024386","P97519","NM_024386","Rn.12297","brain| connective tissue| embryonic tissue| eye| heart| kidney| liver| muscle| ovary| pancreas| placenta| prostate| small intestine| spleen| metamorphosing embryo| juvenile| adult","NM_024386","GO:0001889","liver development","inferred from expression pattern","NM_024386","GO:0005739","mitochondrion","inferred from direct assay","NM_024386","GO:0000062","fatty-acyl-CoA binding","inferred from physical interaction","NM_024386","GenMAPP","Synthesis_and_Degradation_of_Ketone_Bodies_KEGG","ENSRNOT00000012853","Pfam","IPR000891","Pyruvate carboxyltransferase","Coding",6.42,6.43,6.42,6.09,6.16,6.09]
["TC1000004175.rn.1",11.28,10.9,1.301,"up",0.0189940198745518,0.0251712785505675,"Srsf2","serine/arginine-rich splicing factor 2","chr10","-","NM_001009720","coding",105792779,105796106,150,"10q32.3",494445,"NM_001009720","RefSeq","Rattus norvegicus serine/arginine-rich splicing factor 2 (Srsf2), mRNA.","chr10",100,100,"NM_001009720","Q6PDU1","NM_001009720","Rn.136644","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001009720","GO:0006397","mRNA processing","inferred from electronic annotation","NM_001009720","GO:0005634","nucleus","not recorded","NM_001009720","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000067739","Pfam","IPR000504","RNA recognition motif domain","Coding",11.13,11.24,11.48,10.91,10.88,10.92]
["TC1200000142.rn.1",13.44,13.86,-1.338,"down",0.0191455098017802,0.0253121737397613,"Ubl3","ubiquitin-like 3","chr12","+","NM_001015030","coding",7865500,7911526,100,"12p11",363869,"NM_001015030","RefSeq","Rattus norvegicus ubiquitin-like 3 (Ubl3), mRNA.","chr12",100,100,"NM_001015030","Q5BJT2","NM_001015030","Rn.12128","adipose tissue| brain| connective tissue| dorsal root ganglion| heart| kidney| liver| lung| muscle| ovary| pancreas| pituitary gland| prostate| testis| thymus|tailbud embryo| juvenile| adult",{"$nulls":4},"NM_001015030","GO:0005622","intracellular","inferred from electronic annotation",{"$nulls":11},"Coding",13.43,13.47,13.42,13.73,13.92,13.92]
["TC1500000152.rn.1",5.97,6.44,-1.385,"down",0.0193277860069006,0.0254613017196377,"Fhit","fragile histidine triad","chr15","+","NM_021774","coding",15697290,16863159,109,"15p15-p14",60398,"NM_021774","RefSeq","Rattus norvegicus fragile histidine triad (Fhit), mRNA.","chr15",100,100,"NM_021774","Q9JIX3","NM_021774","Rn.45598","brain| eye| ovary| adult","NM_021774","GO:0006163","purine nucleotide metabolic process","inferred from electronic annotation","NM_021774","GO:0005634","nucleus","inferred from direct assay","NM_021774","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009393","Pfam","IPR001310","Histidine triad (HIT) protein","Coding",5.98,5.96,5.97,6.28,6.65,6.4]
["TC1100001468.rn.1",7.73,5.87,3.63,"up",0.0194906180931003,0.0256162016071911,"Abi3bp","ABI family, member 3 (NESH) binding protein","chr11","-","ENSRNOT00000002220","coding",46206925,46422790,672,"11q12",363767,"ENSRNOT00000002220","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:11:49393776:49607902:-1 gene:ENSRNOG00000001627 gene_biotype:protein_coding transcript_biotype:protein_coding","chr11",100,100,"ENSRNOT00000002220","F1M9R4",{"$nulls":3},"ENSRNOT00000002220","GO:0010811","positive regulation of cell-substrate adhesion","inferred from electronic annotation","ENSRNOT00000002220","GO:0005614","interstitial matrix","inferred from electronic annotation","ENSRNOT00000002220","GO:0005518","collagen binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002220","Pfam","IPR003961","Fibronectin, type III","Coding",7.57,8.06,7.56,5.92,5.86,5.84]
["TC1000002865.rn.1",5.42,4.9,1.434,"up",0.0196783905532499,0.0257909553569114,null,null,"chr10","-",null,"coding",43842533,43843450,50,null,"NA","ENSRNOT00000065381","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:43634761:43635639:-1 gene:ENSRNOG00000043268 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000065381","F1LTA0",{"$nulls":3},"ENSRNOT00000065381","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000065381","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065381","Pfam","IPR002059","Cold-shock protein, DNA-binding","Coding",5.58,5.43,5.24,4.77,5.11,4.83]
["TC0700002967.rn.1",9.89,8.97,1.892,"up",0.0198705703780037,0.0259586130733475,"Stk3","serine/threonine kinase 3","chr7","-","NM_031735","coding",73618642,73883794,146,"7q22",65189,"NM_031735","RefSeq","Rattus norvegicus serine/threonine kinase 3 (Stk3), mRNA.","chr7",100,100,"NM_031735","O54748","NM_031735","Rn.89363","eye| lung| placenta| prostate|tailbud embryo| adult","NM_031735","GO:0001841","neural tube formation","inferred from electronic annotation","NM_031735","GO:0005622","intracellular","not recorded","NM_031735","GO:0000287","magnesium ion binding","not recorded",{"$nulls":3},"ENSRNOT00000065722","Pfam","IPR000719","Protein kinase domain","Coding",9.81,9.74,10.12,8.96,8.99,8.97]
["TC1900000913.rn.1",8.22,6.2,4.056,"up",0.0200628317496415,0.0261370519216306,"LOC685989","hypothetical protein LOC685989","chr19","-","mRNARGD6671065_1","coding",309242,313420,50,null,"NA","mRNARGD6671065_1","Rat Genome Database","hypothetical protein LOC685989","chr19",100,100,{"$nulls":24},"Coding",7.84,9.37,7.46,6.37,6.2,6.04]
["TC0100008008.rn.1",16.68,16.25,1.347,"up",0.0202224617624614,0.0262688712107635,"Qk","quaking","chr1","+","NM_001115021","coding",50828134,50931581,80,"1q11",499022,"NM_001115021","RefSeq","Rattus norvegicus quaking (Qk), mRNA.","chr1",100,100,"NM_001115021","Q91XU1","NM_001115021","Rn.228876","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| lung| pituitary gland| spleen| metamorphosing embryo| juvenile| adult","NM_001115021","GO:0001570","vasculogenesis","not recorded","NM_001115021","GO:0005634","nucleus","inferred from electronic annotation","NM_001115021","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":7},"Coding",16.65,16.74,16.64,16.31,16.35,16.1]
["TC1000002396.rn.1",8.71,10.7,-3.972,"down",0.020587445260039,0.0266109466189551,"Syngr3","synaptogyrin 3","chr10","-","NM_001106985","coding",14051413,14056408,81,"10q12",302975,"NM_001106985","RefSeq","Rattus norvegicus synaptogyrin 3 (Syngr3), mRNA.","chr10",100,100,"NM_001106985","D4ABK1","NM_001106985","Rn.6497","brain| dorsal root ganglion| muscle| pineal gland| adult","NM_001106985","GO:0021762","substantia nigra development","not recorded","NM_001106985","GO:0008021","synaptic vesicle","inferred from electronic annotation","NM_001106985","GO:0042169","SH2 domain binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017833","Pfam","IPR008253","Marvel domain","Coding",8.65,8.59,8.88,10.75,10.88,10.48]
["TC0300000058.rn.1",7.32,8.03,-1.636,"down",0.0208371040449287,0.0268377944957705,"Npdc1","neural proliferation, differentiation and control, 1","chr3","+","NM_001004231","coding",2624535,2631090,188,"3p13",296562,"NM_001004231","RefSeq","Rattus norvegicus neural proliferation, differentiation and control, 1 (Npdc1), mRNA.","chr3",100,100,"NM_001004231","Q6AY81","NM_001004231","Rn.5802","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| vibrissa| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_001004231","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000018927","Pfam","IPR009635","Neural proliferation differentiation control-1","Coding",7.23,7.31,7.42,7.98,8.06,8.06]
["TC0200001865.rn.1",6.76,7.19,-1.347,"down",0.0209964947765196,0.026977079198441,"Ngf","nerve growth factor (beta polypeptide)","chr2","+","NM_001277055","coding",204886171,204939523,56,"2q34",310738,"NM_001277055","RefSeq","Rattus norvegicus nerve growth factor (beta polypeptide) (Ngf), mRNA.","chr2",100,100,"NM_001277055","P25427","NM_001277055","Rn.22168","connective tissue| adult","NM_001277055","GO:0006954","inflammatory response","inferred from expression pattern","NM_001277055","GO:0005576","extracellular region","traceable author statement","NM_001277055","GO:0005057","receptor signaling protein activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022200","Pfam","IPR002072","Nerve growth factor-related","Coding",6.65,6.61,7.02,7.44,7.1,7.02]
["TC1000001517.rn.1",7.5,6.86,1.558,"up",0.0212889137552923,0.0272299330567103,"Cbx1","chromobox homolog 1","chr10","+","ENSRNOT00000011665","coding",84656699,84677485,160,"10q31",360609,"ENSRNOT00000011665","ENSEMBL","ensembl:known chromosome:Rnor_5.0:10:84462829:84468656:1 gene:ENSRNOG00000008689 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000011665","D4A3T3","ENSRNOT00000011665","Rn.232970","colon| pituitary gland| prostate| testis| thymus| fetus| adult","ENSRNOT00000011665","GO:0045892","negative regulation of transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000011665","GO:0000775","chromosome, centromeric region","not recorded","ENSRNOT00000011665","GO:0019899","enzyme binding","not recorded",{"$nulls":3},"ENSRNOT00000011665","Pfam","IPR008251","Chromo shadow domain","Coding",7.42,7.42,7.65,6.82,6.77,7]
["TC1000002199.rn.1",8.13,8.59,-1.376,"down",0.0212998002954728,0.027239846199857,"Snn","stannin","chr10","-","NM_001034083","coding",4635127,4644606,60,"10q11",29140,"NM_001034083","RefSeq","Rattus norvegicus stannin (Snn), mRNA.","chr10",100,100,"NM_001034083","P61808","NM_001034083","Rn.6147","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| kidney| lung| pineal gland| pituitary gland| placenta| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_001034083","GO:0005741","mitochondrial outer membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000003333","Pfam","IPR015135","Stannin transmembrane","Coding",7.87,8.25,8.28,8.58,8.59,8.6]
["TC0300000788.rn.1",11.62,12.07,-1.366,"down",0.0217982969218972,0.0276949124635125,"Gorasp2","golgi reassembly stacking protein 2","chr3","+","ENSRNOT00000039065","coding",57286893,57301506,100,"3q21",113961,"ENSRNOT00000039065","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:63767465:63782078:1 gene:ENSRNOG00000023386 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000039065","F6T071","ENSRNOT00000039065","Rn.145137","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| eye| kidney| liver| lung| muscle| pancreas| pituitary gland| placenta| prostate| spleen| testis| vibrissa| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000039065","GO:0006996","organelle organization","inferred from electronic annotation","ENSRNOT00000039065","GO:0005794","Golgi apparatus","inferred from direct assay","ENSRNOT00000039065","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000039065","Pfam","IPR024958","GRASP55/65 PDZ-like domain","Coding",11.45,11.55,11.87,12.04,12.23,11.93]
["TC0200004419.rn.1",10.41,9.82,1.505,"up",0.0218439706564753,0.0277195400954761,"Cept1","choline/ethanolamine phosphotransferase 1","chr2","-","NM_001007699","coding",209118140,209161152,147,"2q34",310773,"NM_001007699","RefSeq","Rattus norvegicus choline/ethanolamine phosphotransferase 1 (Cept1), mRNA.","chr2",100,100,"NM_001007699","Q6AXM5","NM_001007699","Rn.2636","adrenal gland| brain| embryonic tissue| eye| heart| kidney| liver| lung| pineal gland| pituitary gland| placenta| prostate| small intestine| metamorphosing embryo| fetus| juvenile| adult","NM_001007699","GO:0006646","phosphatidylethanolamine biosynthetic process","inferred from electronic annotation","NM_001007699","GO:0005789","endoplasmic reticulum membrane","inferred from electronic annotation","NM_001007699","GO:0004142","diacylglycerol cholinephosphotransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000036551","Pfam","IPR000462","CDP-alcohol phosphatidyltransferase","Coding",10.39,10.27,10.57,9.74,10.02,9.69]
["TC0100002334.rn.1",9.9,9.62,1.214,"up",0.0220702883162907,0.0279209801429092,"Eif3f","eukaryotic translation initiation factor 3, subunit F","chr1","+","NM_001277302","coding",173532826,173542040,120,"1q33",293427,"NM_001277302","RefSeq","Rattus norvegicus eukaryotic translation initiation factor 3, subunit F (Eif3f), mRNA.","chr1",100,100,"NM_001277302","D4AC36","NM_001277302","Rn.41724","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| liver| lung| pancreas| placenta| prostate| small intestine| spleen| vibrissa| fetus| juvenile| adult","NM_001277302","GO:0006413","translational initiation","inferred from electronic annotation","NM_001277302","GO:0005852","eukaryotic translation initiation factor 3 complex","inferred from electronic annotation","NM_001277302","GO:0003743","translation initiation factor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000021017","Pfam","IPR000555","JAB1/MPN/MOV34 metalloenzyme domain","Coding",9.92,9.8,9.99,9.78,9.61,9.46]
["TC0900002545.rn.1",7.81,8.33,-1.434,"down",0.0224093719593555,0.0282102471415294,"Nudt12","nudix (nucleoside diphosphate linked moiety X)-type motif 12","chr9","-","NM_001109010","coding",105680603,105693357,92,"9q36",367323,"NM_001109010","RefSeq","Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 12 (Nudt12), mRNA.","chr9",100,100,"NM_001109010","D4A2H8","NM_001109010","Rn.44072","brain| dorsal root ganglion| heart| liver| prostate| adult","NM_001109010","GO:0006742","NADP catabolic process","inferred from electronic annotation","NM_001109010","GO:0005634","nucleus","inferred from electronic annotation","NM_001109010","GO:0000210","NAD+ diphosphatase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000066968","Pfam","IPR000086","NUDIX hydrolase domain","Coding",7.93,7.56,7.93,8.24,8.45,8.3]
["TC0100007210.rn.1",5.02,3.58,2.713,"up",0.0225378765315786,0.0283207069755535,null,null,"chr1","-",null,"coding",223728985,223730266,30,null,"NA","ENSRNOT00000074619","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:230705030:230706311:-1 gene:ENSRNOG00000047583 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000074619","M0RAI2",{"$nulls":3},"ENSRNOT00000074619","GO:0007276","gamete generation","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000074619","Pfam","IPR003671","Spindlin/spermiogenesis-specific protein","Coding",4.77,5.61,4.68,3.55,3.51,3.69]
["TC1000003887.rn.1",10.14,10.45,-1.24,"down",0.0229080854770274,0.0286285145914707,"Eftud2","elongation factor Tu GTP binding domain containing 2","chr10","-","ENSRNOT00000055176","coding",90932069,90990252,396,"10q32.1",287739,"ENSRNOT00000055176","ENSEMBL","ensembl:known chromosome:Rnor_5.0:10:90705843:90752820:-1 gene:ENSRNOG00000002818 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000055176","F1LM66","ENSRNOT00000055176","Rn.62495","adipose tissue| adrenal gland| brain| colon| connective tissue| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| placenta| prostate| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000055176","GO:0006184","GTP catabolic process","inferred from electronic annotation","ENSRNOT00000055176","GO:0005634","nucleus","not recorded","ENSRNOT00000055176","GO:0003924","GTPase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000055176","Pfam","IPR000640","Translation elongation factor EFG, V domain","Coding",10.21,10.09,10.13,10.31,10.54,10.5]
["TC0700003297.rn.1",7.46,6.74,1.647,"up",0.0231461821080818,0.0288436909822547,"Rps19l1","ribosomal protein S19-like 1","chr7","-","ENSRNOT00000041802","coding",111722340,111732073,28,"7q34",500885,"ENSRNOT00000041802","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:111661230:111661861:-1 gene:ENSRNOG00000031474 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000041802","F1LYF3",{"$nulls":3},"ENSRNOT00000041802","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000041802","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000041802","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000041802","Pfam","IPR001266","Ribosomal protein S19e","Coding",7.47,7.36,7.55,6.93,6.94,6.35]
["TCUn_KL568362v100000001.rn.1",5.96,4.2,3.387,"up",0.0234152112243412,0.0290844214642854,null,null,"chrUn_KL568362v1","-",null,"coding",37987,38534,30,null,"NA","ENSRNOT00000074151","ENSEMBL","ensembl:novel scaffold:Rnor_5.0:AABR06112323.1:608:1155:-1 gene:ENSRNOG00000046908 gene_biotype:protein_coding transcript_biotype:protein_coding","chrUn_KL568362v1",100,100,"ENSRNOT00000074151","M0RDB5",{"$nulls":3},"ENSRNOT00000074151","GO:0007276","gamete generation","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000074151","Pfam","IPR003671","Spindlin/spermiogenesis-specific protein","Coding",5.18,6.86,5.85,4.07,3.97,4.57]
["TC0900002027.rn.1",7.67,7.21,1.376,"up",0.0237404683390212,0.0293361158345779,"Ppil3","peptidylprolyl isomerase (cyclophilin)-like 3","chr9","-","NM_175707","coding",65315118,65329088,110,"9q31",301432,"NM_175707","RefSeq","Rattus norvegicus peptidylprolyl isomerase (cyclophilin)-like 3 (Ppil3), mRNA.","chr9",100,100,"NM_175707","Q812D3","NM_175707","Rn.14747","dorsal root ganglion| eye| heart| kidney| nerve| ovary| prostate| juvenile| adult","NM_175707","GO:0000413","protein peptidyl-prolyl isomerization","inferred from electronic annotation","NM_175707","GO:0071013","catalytic step 2 spliceosome","inferred from electronic annotation","NM_175707","GO:0003755","peptidyl-prolyl cis-trans isomerase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018284","Pfam","IPR002130","Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain","Coding",7.65,7.55,7.81,7.19,7.34,7.11]
["TC0900001435.rn.1",9.52,11.22,-3.249,"down",0.0238626266549671,0.0294024101770294,"LOC100912213","uncharacterized LOC100912213","chr9","-","mRNARGD6488415_1","coding",8813472,8824580,60,null,"NA","mRNARGD6488415_1","Rat Genome Database","uncharacterized LOC100912213","chr9",100,100,{"$nulls":24},"Coding",9.52,9.78,9.25,10.96,11.28,11.43]
["TC0700000139.rn.1",7.04,7.32,-1.214,"down",0.0240447611775987,0.0295327403249712,"Sirt6","sirtuin 6","chr7","+","NM_001031649","coding",10937622,10943049,140,"7q11",299638,"NM_001031649","RefSeq","Rattus norvegicus sirtuin 6 (Sirt6), mRNA.","chr7",100,100,"NM_001031649","Q4FZY2","NM_001031649","Rn.8108","adipose tissue| adrenal gland| brain| connective tissue| embryonic tissue| heart| kidney| lung| pituitary gland| placenta| prostate| spleen| metamorphosing embryo| fetus| juvenile| adult","NM_001031649","GO:0006471","protein ADP-ribosylation","inferred from electronic annotation","NM_001031649","GO:0005634","nucleus","not recorded","NM_001031649","GO:0003682","chromatin binding","not recorded",{"$nulls":3},"ENSRNOT00000008758","Pfam","IPR003000","Sirtuin family","Coding",7.16,6.98,6.97,7.29,7.5,7.16]
["TSUnmapped00000233.rn.1",11.98,12.29,-1.24,"down",0.024093849163299,0.0295637673105649,"Hiat1","hippocampus abundant transcript 1",null,null,"NM_001106467","coding","NA","NA",30,"2q41",100134827,"NM_001106467","RefSeq","Rattus norvegicus hippocampus abundant gene transcript 1 (Hiat1), mRNA.",null,100,100,"NM_001106467","B1H293","NM_001106467","Rn.128804","brain| dorsal root ganglion| embryonic tissue| kidney| lung| ovary| pancreas| pituitary gland| testis| metamorphosing embryo| juvenile| adult","NM_001106467","GO:0055085","transmembrane transport","inferred from electronic annotation","NM_001106467","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001106467","GO:0005215","transporter activity","inferred from electronic annotation",{"$nulls":7},"Coding",11.91,11.83,12.2,12.28,12.4,12.19]
["TC1700001659.rn.1",5.33,4.45,1.84,"up",0.0245938992359895,0.029986707631668,"LOC102553010","INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND  17beta-estradiol (ortholog) AND  2 3-dimethoxynaphthalene-1 4-dione (ortholog)","chr17","-","mRNARGD7739349_1","coding",32009398,32015086,60,null,"NA","mRNARGD7739349_1","Rat Genome Database","INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND  17beta-estradiol (ortholog) AND  2 3-dimethoxynaphthalene-1 4-dione (ortholog)","chr17",100,100,"ENSRNOT00000070876","M0RE01",{"$nulls":3},"ENSRNOT00000070876","GO:0010951","negative regulation of endopeptidase activity","inferred from electronic annotation","ENSRNOT00000070876","GO:0005615","extracellular space","inferred from electronic annotation","ENSRNOT00000070876","GO:0004867","serine-type endopeptidase inhibitor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000070876","Pfam","IPR023796","Serpin domain","Coding",5.33,5.33,5.33,4.41,4.8,4.14]
["TC0400003390.rn.1",13.38,14.04,-1.58,"down",0.0246234517236582,0.0300111428018874,"LOC100361920","null","chr4","-","mRNARGD2389302_t00","coding",126070992,126071261,30,null,"NA","mRNARGD2389302_t00","Rat Genome Database","null","chr4",100,100,{"$nulls":24},"Coding",13.18,13.49,13.46,14.02,14.14,13.97]
["TC0100005333.rn.1",3.76,3.48,1.214,"up",0.0252028181825394,0.0305405060794483,"Klk1c10","kallikrein 1-related peptidase C10 (Klk1c10), mRNA","chr1","-","NM_001135173_2","coding",99890289,99894353,60,null,"NA","NM_001135173_2","RefSeq","kallikrein 1-related peptidase C10 (Klk1c10), mRNA","chr1",100,100,"ENSRNOT00000045756","P36375","ENSRNOT00000045756","Rn.220730","adult","ENSRNOT00000045756","GO:0006508","proteolysis","inferred from electronic annotation","ENSRNOT00000045756","GO:0005575","cellular_component","no biological data available","ENSRNOT00000045756","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000045756","Pfam","IPR001254","Peptidase S1","Coding",3.79,3.85,3.65,3.65,3.34,3.44]
["TC0X00000035.rn.1",5.16,4.37,1.729,"up",0.0252159932102778,0.0305543399871467,"RGD1559731","similar to RIKEN cDNA 4930578C19","chrX","+","ENSRNOT00000005659","coding",4691185,4743999,60,"Xq12",501512,"ENSRNOT00000005659","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:5476842:5525113:1 gene:ENSRNOG00000004265 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000005659","D3ZCG1",{"$nulls":22},"Coding",4.97,5.12,5.39,4.25,4.52,4.34]
["TC0100000274.rn.1",7.49,5.65,3.58,"up",0.025447620903939,0.0307470698144484,"LOC367485","similar to spermatogenesis associated glutamate (E)-rich protein 4d","chr1","+","ENSRNOT00000047660","coding",24893836,24905445,80,null,501467,"ENSRNOT00000047660","ENSEMBL","ensembl:known chromosome:Rnor_5.0:1:26359883:26364171:1 gene:ENSRNOG00000048976 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000047660","F1M7J5","ENSRNOT00000047660","Rn.220886",{"$nulls":16},"ENSRNOT00000047660","Pfam","IPR006907","Domain of unknown function DUF622","Coding",7.08,8.64,6.75,5.59,5.59,5.76]
["TCUn_KL568319v100000001.rn.1",6.87,3.58,9.781,"up",0.0255446283522445,0.0308064245422688,null,null,"chrUn_KL568319v1","+",null,"coding",117303,117971,25,null,"NA","ENSRNOT00000073826","ENSEMBL","ensembl:novel scaffold:Rnor_5.0:AABR06111842.1:2:670:1 gene:ENSRNOG00000047640 gene_biotype:protein_coding transcript_biotype:protein_coding","chrUn_KL568319v1",100,100,"ENSRNOT00000073826","M0R408",{"$nulls":3},"ENSRNOT00000073826","GO:0007276","gamete generation","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000073826","Pfam","IPR003671","Spindlin/spermiogenesis-specific protein","Coding",6.65,7.51,6.45,3.63,3.41,3.7]
["TC1200000169.rn.1",11.1,11.52,-1.338,"down",0.025817727453321,0.0310389835292694,"Usp12","ubiquitin specific peptidase 12","chr12","+","NM_001166576","coding",10037601,10087685,120,"12p11",360763,"NM_001166576","RefSeq","Rattus norvegicus ubiquitin specific peptidase 12 (Usp12), mRNA.","chr12",100,100,"NM_001166576","D0RB01","NM_001166576","Rn.206008","liver| placenta| prostate| testis| juvenile| adult","NM_001166576","GO:0006511","ubiquitin-dependent protein catabolic process","inferred from electronic annotation",{"$nulls":4},"NM_001166576","GO:0004197","cysteine-type endopeptidase activity","not recorded",{"$nulls":3},"ENSRNOT00000044038","Pfam","IPR001394","Peptidase C19, ubiquitin carboxyl-terminal hydrolase","Coding",11.05,11.07,11.18,11.53,11.49,11.54]
["TC0700002100.rn.1",11.96,12.92,-1.945,"down",0.0260197087498725,0.0312017368972826,"Aes","amino-terminal enhancer of split","chr7","-","NM_019220","coding",11012843,11018143,88,"7q11",29466,"NM_019220","RefSeq","Rattus norvegicus amino-terminal enhancer of split (Aes), mRNA.","chr7",100,100,"NM_019220","P63003","NM_019220","Rn.11495","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| placenta| prostate| small intestine| spleen| vibrissa| fetus| juvenile| adult","NM_019220","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_019220","GO:0005634","nucleus","inferred from direct assay","NM_019220","GO:0003714","transcription corepressor activity","inferred from electronic annotation",{"$nulls":7},"Coding",11.99,11.95,11.95,12.9,12.85,13.02]
["TC0X00000483.rn.1",8.25,6.99,2.395,"up",0.0263617315996867,0.0314749906947665,null,null,"chrX","+",null,"coding",55331389,55333042,30,null,"NA","ENSRNOT00000075300","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:55523379:55525032:1 gene:ENSRNOG00000047748 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000075300","M0RAW8",{"$nulls":18},"ENSRNOT00000075300","Pfam","IPR004244","Transposase, L1","Coding",8.09,9.2,7.47,6.65,6.68,7.64]
["TC1800000217.rn.1",7.47,6.9,1.485,"up",0.0266426062967921,0.0317296526793895,"Polr2d","polymerase (RNA) II (DNA directed) polypeptide D","chr18","+","NM_001108886","coding",24570762,24577894,69,"18p12",364834,"NM_001108886","RefSeq","Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide D (Polr2d), mRNA.","chr18",100,100,"NM_001108886","D4A259","NM_001108886","Rn.128728","heart| kidney| liver| lung| juvenile","NM_001108886","GO:0000288","nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay","not recorded","NM_001108886","GO:0000932","cytoplasmic mRNA processing body","not recorded","NM_001108886","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000021738","Pfam","IPR005574","RNA polymerase II, Rpb4","Coding",7.4,7.34,7.68,7.24,6.81,6.65]
["TC1200000380.rn.1",7.97,7.69,1.214,"up",0.0270097853109222,0.0319457330044277,"Srrt","serrate RNA effector molecule homolog (Arabidopsis)","chr12","+","ENSRNOT00000074544","coding",22457908,22471090,210,null,"NA","ENSRNOT00000074544","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:12:24473101:24486246:1 gene:ENSRNOG00000048277 gene_biotype:protein_coding transcript_biotype:protein_coding","chr12",100,100,"ENSRNOT00000074544","M0R7E6",{"$nulls":3},"ENSRNOT00000074544","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000074544","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000074544","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000074544","Pfam","IPR007042","Arsenite-resistance protein 2","Coding",7.92,7.92,8.08,7.72,7.58,7.78]
["TC0800001854.rn.1",7.45,7.16,1.223,"up",0.0272175214075579,0.0321061771268972,"B230307C23Rik","zinc finger protein 709-like","chr8","+","mRNARGD7648511_1","coding",133275046,133289149,116,null,"NA","mRNARGD7648511_1","Rat Genome Database","zinc finger protein 709-like","chr8",100,100,"ENSRNOT00000063989","F1M0I1",{"$nulls":3},"ENSRNOT00000063989","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000063989","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000063989","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000063989","Pfam","IPR001909","Krueppel-associated box","Coding",7.4,7.44,7.51,7.17,7.07,7.23]
["TC1300001128.rn.1",9.31,8.74,1.485,"up",0.027452878657162,0.0322917087725867,"LOC102551071","myosin light polypeptide 6-like","chr13","-","ENSRNOT00000074458","coding",6456109,6456767,30,null,100909726,"ENSRNOT00000074458","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:11738837:11739292:-1 gene:ENSRNOG00000049461 gene_biotype:protein_coding transcript_biotype:protein_coding","chr13",100,100,"ENSRNOT00000074458","M0RC91",{"$nulls":11},"ENSRNOT00000074458","GO:0005509","calcium ion binding","inferred from electronic annotation",{"$nulls":7},"Coding",9.43,8.95,9.56,8.56,8.81,8.85]
["TC0500004046.rn.1",5.14,5.51,-1.292,"down",0.0278616035878944,0.0326574842054867,"Ptchd2","patched domain containing 2","chr5","-","ENSRNOT00000036647","coding",165051522,165099826,298,"5q36",313705,"ENSRNOT00000036647","ENSEMBL","ensembl:known chromosome:Rnor_5.0:5:168710726:168741342:-1 gene:ENSRNOG00000026447 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000036647","D3ZW02","ENSRNOT00000036647","Rn.226100","brain| adult","ENSRNOT00000036647","GO:0007165","signal transduction","inferred from electronic annotation","ENSRNOT00000036647","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000036647","GO:0008158","hedgehog receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000036647","Pfam","IPR003392","Patched","Coding",5.14,4.97,5.31,5.56,5.67,5.31]
["TC1300000286.rn.1",7.26,6.84,1.338,"up",0.028207033009491,0.0329495854349066,"Snrpe","small nuclear ribonucleoprotein polypeptide E","chr13","+","NM_001271237","coding",50252658,50258951,78,null,100360682,"NM_001271237","RefSeq","Rattus norvegicus small nuclear ribonucleoprotein polypeptide E (Snrpe), mRNA.","chr13",100,100,"NM_001271237","D3ZSP1","NM_001271237","Rn.145709","adrenal gland| dorsal root ganglion| eye| kidney| liver| fetus| adult","NM_001271237","GO:0000387","spliceosomal snRNP assembly","not recorded","NM_001271237","GO:0005634","nucleus","not recorded",{"$nulls":11},"Coding",7.23,7.2,7.35,6.92,6.88,6.72]
["TC0100000866.rn.1",8.97,11.04,-4.199,"down",0.028383111609626,0.0331021791222649,"Syt5","synaptotagmin V","chr1","+","NM_019350","coding",72860218,72867934,110,"1q12",54309,"NM_019350","RefSeq","Rattus norvegicus synaptotagmin V (Syt5), mRNA.","chr1",100,100,"NM_019350","P47861","NM_019350","Rn.11030","adrenal gland| brain| pancreas| juvenile| adult","NM_019350","GO:0017156","calcium ion-dependent exocytosis","non-traceable author statement","NM_019350","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_019350","GO:0005215","transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024547","Pfam","IPR000008","C2 domain","Coding",8.98,8.89,9.04,11.29,10.94,10.89]
["TC0100005144.rn.1",6.65,7.05,-1.32,"down",0.0289612936882465,0.0336254772665003,"RGD1562079","RGD1562079","chr1","-","ENSRNOT00000056877","coding",88779473,88780460,30,"1q21",499125,"ENSRNOT00000056877","ENSEMBL","ensembl:known chromosome:Rnor_5.0:1:89936061:89936417:-1 gene:ENSRNOG00000037541 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000056877","B0K036","ENSRNOT00000056877","Rn.3527","adipose tissue| connective tissue| dorsal root ganglion| eye| heart| kidney| muscle| ovary| placenta| spleen| fetus| adult","ENSRNOT00000056877","GO:0034553","mitochondrial respiratory chain complex II assembly","not recorded","ENSRNOT00000056877","GO:0005739","mitochondrion","not recorded",{"$nulls":7},"ENSRNOT00000056877","Pfam","IPR008011","Complex 1 LYR protein","Coding",6.75,6.42,6.77,7.14,7.07,6.94]
["TC0100002538.rn.1",10.52,14.66,-17.63,"down",0.0294029989393286,0.0340143509972747,"Cacng3","calcium channel, voltage-dependent, gamma subunit 3","chr1","+","NM_080691","coding",192613766,192708371,40,"1q36",140724,"NM_080691","RefSeq","Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 3 (Cacng3), mRNA.","chr1",100,100,"NM_080691","Q8VHX0","NM_080691","Rn.212756",null,"NM_080691","GO:0070588","calcium ion transmembrane transport","inferred from electronic annotation","NM_080691","GO:0032281","alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex","inferred from direct assay","NM_080691","GO:0005244","voltage-gated ion channel activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000016632","Pfam","IPR004031","PMP-22/EMP/MP20/Claudin superfamily","Coding",10.24,10.58,10.73,14.75,14.64,14.59]
["TC1500001751.rn.1",4,3.64,1.283,"up",0.0295742428215749,0.0341728091673714,"LOC100911163","granzyme C-like","chr15","-","ENSRNOT00000074678","coding",36247356,36251976,70,null,100911163,"ENSRNOT00000074678","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:40105838:40107176:-1 gene:ENSRNOG00000049745 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000074678","M0RC69",{"$nulls":3},"ENSRNOT00000074678","GO:0006508","proteolysis","not recorded","ENSRNOT00000074678","GO:0030141","secretory granule","not recorded","ENSRNOT00000074678","GO:0004252","serine-type endopeptidase activity","not recorded",{"$nulls":3},"ENSRNOT00000074678","Pfam","IPR001254","Peptidase S1","Coding",3.87,4.26,3.87,3.49,3.6,3.82]
["TC1000004337.rn.1",7.71,7.23,1.395,"up",0.029633810660414,0.0342130084395887,"Coro7","coronin 7","chr10","+","NM_001191639","coding",11090200,11144289,319,"10q12",192276,"NM_001191639","RefSeq","Rattus norvegicus coronin 7 (Coro7), mRNA.","chr10",100,100,"NM_001191639","O35828","NM_001191639","Rn.13808","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| heart| lung| pituitary gland| prostate| spleen|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001191639","GO:0030036","actin cytoskeleton organization","not recorded","NM_001191639","GO:0000139","Golgi membrane","inferred from electronic annotation","NM_001191639","GO:0051015","actin filament binding","not recorded",{"$nulls":3},"ENSRNOT00000006067","Pfam","IPR001680","WD40 repeat","Coding",7.84,7.48,7.8,7.16,7.43,7.09]
["TC1600000711.rn.1",5.91,5.07,1.79,"up",0.030065495246316,0.0345684643687979,"Rbpms","RNA binding protein with multiple splicing","chr16","+","NM_001271244","coding",61954537,62110000,226,"16q12.3",498642,"NM_001271244","RefSeq","Rattus norvegicus RNA binding protein with multiple splicing (Rbpms), mRNA.","chr16",100,100,"NM_001271244","F1M7J8","NM_001271244","Rn.8565","brain| colon| connective tissue| embryonic tissue| eye| heart| liver| lung| ovary| pancreas| pituitary gland| spleen|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001271244","GO:0010862","positive regulation of pathway-restricted SMAD protein phosphorylation","inferred from electronic annotation","NM_001271244","GO:0005634","nucleus","not recorded","NM_001271244","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017883","Pfam","IPR000504","RNA recognition motif domain","Coding",5.86,5.99,5.89,5.04,5.01,5.15]
["TC0400002982.rn.1",8.61,9.09,-1.395,"down",0.0302072808589098,0.0346677243525451,"Herc6","hect domain and RLD 6","chr4","-","ENSRNOT00000058626","coding",88606838,88670322,302,null,"NA","ENSRNOT00000058626","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:4:153429563:153471906:-1 gene:ENSRNOG00000023969 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000058626","F1LPM8",{"$nulls":3},"ENSRNOT00000058626","GO:0042787","protein ubiquitination involved in ubiquitin-dependent protein catabolic process",null,"ENSRNOT00000058626","GO:0005634","nucleus",null,"ENSRNOT00000058626","GO:0004842","ubiquitin-protein transferase activity",{"$nulls":4},"ENSRNOT00000058626","Pfam","IPR000408","Regulator of chromosome condensation, RCC1","Coding",8.35,8.47,9.01,9.11,9.28,8.88]
["TC0500002242.rn.1",4.97,4.55,1.338,"up",0.0303912395727158,0.0348029680676146,"LOC100364265","ribosomal protein L19-like","chr5","-","ENSRNOT00000072844","coding",16767024,16782647,76,null,100364265,"ENSRNOT00000072844","ENSEMBL","ensembl:known chromosome:Rnor_5.0:5:21544713:21560336:-1 gene:ENSRNOG00000012088 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000072844","Q6QI82","ENSRNOT00000072844","Rn.124174",null,"ENSRNOT00000072844","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000072844","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000072844","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000072844","Pfam","IPR000196","Ribosomal protein L19/L19e domain","Coding",4.95,5.24,4.73,4.39,4.5,4.75]
["TC0600001352.rn.1",5.78,5.33,1.366,"up",0.030724601850858,0.0350299986053593,"RGD1311756","similar to hypothetical protein FLJ20950","chr6","+","NM_001173557","coding",124786172,124870241,236,"6q32",362769,"NM_001173557","RefSeq","Rattus norvegicus similar to hypothetical protein FLJ20950 (RGD1311756), mRNA.","chr6",100,100,"NM_001173557","D4A9W3","NM_001173557","Rn.3768","adipose tissue| heart| kidney| ovary| pineal gland| pituitary gland| prostate| juvenile| adult",{"$nulls":4},"NM_001173557","GO:0005739","mitochondrion","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000005903","Pfam","IPR009906","Protein of unknown function DUF1445","Coding",5.78,5.76,5.79,5.34,5.34,5.31]
["TC0300001685.rn.1",8.22,8.99,-1.705,"down",0.0309717869901999,0.0352308893855519,"Zc3h6","zinc finger CCCH type containing 6","chr3","+","NM_001107772","coding",121496205,121551461,146,"3q36",311415,"NM_001107772","RefSeq","Rattus norvegicus zinc finger CCCH type containing 6 (Zc3h6), mRNA.","chr3",100,100,"NM_001107772","F1LTU5","NM_001107772","Rn.46791","brain| adult",{"$nulls":8},"NM_001107772","GO:0046872","metal ion binding","inferred from electronic annotation",{"$nulls":7},"Coding",8.36,8.26,8.04,8.89,8.93,9.16]
["TC0100000811.rn.1",3.32,3.04,1.214,"up",0.0312095659387816,0.035410932065485,"Olr4","olfactory receptor 4","chr1","+","NM_001000111","coding",70454322,70455260,30,"1q12",292560,"NM_001000111","RefSeq","Rattus norvegicus olfactory receptor 4 (Olr4), mRNA.","chr1",100,100,"NM_001000111","M0RD62","NM_001000111","Rn.142005",null,"NM_001000111","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001000111","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001000111","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000072272","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",3.3,3.53,3.14,2.97,3.12,3.03]
["TC1000001902.rn.1",11.63,11.07,1.474,"up",0.0317349242139445,0.0358687857713859,"Rpl38","similar to 60S ribosomal protein L38","chr10","+","ENSRNOT00000030800","coding",103198402,103202059,50,null,682793,"ENSRNOT00000030800","ENSEMBL","ensembl:known chromosome:Rnor_5.0:10:102858164:102861799:1 gene:ENSRNOG00000036729 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000030800","P63174","ENSRNOT00000030800","Rn.129626","connective tissue| eye| heart| liver| pituitary gland| fetus| juvenile| adult","ENSRNOT00000030800","GO:0001501","skeletal system development","not recorded","ENSRNOT00000030800","GO:0022625","cytosolic large ribosomal subunit","not recorded","ENSRNOT00000030800","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000030800","Pfam","IPR002675","Ribosomal protein L38e","Coding",11.87,11.69,11.34,11.43,10.71,11.06]
["TC1400000951.rn.1",7.17,7.44,-1.206,"down",0.0320529424259507,0.0361196389186122,"Ppia","peptidylprolyl isomerase A (cyclophilin A)","chr14","+","NM_017101","coding",86673689,86677444,126,"14q21",25518,"NM_017101","RefSeq","Rattus norvegicus peptidylprolyl isomerase A (cyclophilin A) (Ppia), mRNA.","chr14",100,100,"NM_017101","P10111","NM_017101","Rn.1463","adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pituitary gland| small intestine| spleen| thymus| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_017101","GO:0000413","protein peptidyl-prolyl isomerization","not recorded","NM_017101","GO:0005576","extracellular region","inferred from electronic annotation","NM_017101","GO:0003755","peptidyl-prolyl cis-trans isomerase activity","not recorded",{"$nulls":3},"ENSRNOT00000009179","Pfam","IPR002130","Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain","Coding",7.16,7.09,7.27,7.52,7.53,7.27]
["TC0100006231.rn.1",3.54,3.1,1.357,"up",0.0324225919387534,0.0364350397572833,"Olr126","olfactory receptor 126","chr1","-","NM_001000158","coding",168882636,168883586,30,"1q32",293262,"NM_001000158","RefSeq","Rattus norvegicus olfactory receptor 126 (Olr126), mRNA.","chr1",100,100,"NM_001000158","D3ZEX5","NM_001000158","Rn.141869",null,"NM_001000158","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001000158","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001000158","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000043967","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",3.42,3.87,3.32,3.15,3.15,3]
["TC0200002614.rn.1",9.25,8.81,1.357,"up",0.0326528067535975,0.0366313745158881,"Papd4","PAP associated domain containing 4","chr2","-","NM_001008372","coding",22745441,22798806,325,"2q12",361878,"NM_001008372","RefSeq","Rattus norvegicus PAP associated domain containing 4 (Papd4), mRNA.","chr2",100,100,"NM_001008372","Q5U315","NM_001008372","Rn.98477","brain| connective tissue| heart| kidney| liver| lung| pituitary gland| prostate| spleen| testis| metamorphosing embryo| juvenile| adult","NM_001008372","GO:0002244","hematopoietic progenitor cell differentiation","not recorded","NM_001008372","GO:0005634","nucleus","inferred from electronic annotation","NM_001008372","GO:0004652","polynucleotide adenylyltransferase activity","not recorded",{"$nulls":3},"ENSRNOT00000016135","Pfam","IPR002058","PAP/25A-associated","Coding",9.22,9.22,9.32,8.72,8.9,8.8]
["TC0900000460.rn.1",12.12,12.61,-1.404,"down",0.0329430754523023,0.0368601715737162,"Plekhb2","pleckstrin homology domain containing, family B (evectins) member 2","chr9","+","NM_001106899","coding",41348431,41381096,100,"9q21",301337,"NM_001106899","RefSeq","Rattus norvegicus pleckstrin homology domain containing, family B (evectins) member 2 (Plekhb2), mRNA.","chr9",100,100,"NM_001106899","D4A263","NM_001106899","Rn.1410","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":8},"ENSRNOT00000019419","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019419","Pfam","IPR001849","Pleckstrin homology domain","Coding",12.18,12.05,12.14,12.5,12.79,12.55]
["TC0800002747.rn.1",12.22,12.81,-1.505,"down",0.0332138549186453,0.0370771720192653,"Map2k1","mitogen activated protein kinase kinase 1","chr8","-","NM_031643","coding",69134218,69722457,185,"8q24",170851,"NM_031643","RefSeq","Rattus norvegicus mitogen activated protein kinase kinase 1 (Map2k1), mRNA.","chr8",100,100,"NM_031643","Q01986","NM_031643","Rn.5850","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| nerve| pancreas| placenta| prostate| spleen| thymus|tailbud embryo| juvenile| adult","NM_031643","GO:0000165","MAPK cascade","inferred from mutant phenotype","NM_031643","GO:0005634","nucleus","traceable author statement","NM_031643","GO:0004674","protein serine/threonine kinase activity","inferred from electronic annotation","NM_031643","GenMAPP","Integrin-mediated_cell_adhesion_KEGG","ENSRNOT00000013933","Pfam","IPR000719","Protein kinase domain","Coding",12.21,12.19,12.25,12.94,12.82,12.68]
["TC1700001718.rn.1",6.23,5.54,1.613,"up",0.0335978185791419,0.037407236670829,"LOC102549973","non-POU domain-containing octamer-binding protein-like","chr17","-","mRNARGD7719994_1","coding",36131801,36132451,30,null,"NA","mRNARGD7719994_1","Rat Genome Database","non-POU domain-containing octamer-binding protein-like","chr17",100,100,{"$nulls":24},"Coding",6.25,6.3,6.14,5.68,5.33,5.62]
["TC0600001668.rn.1",5.65,4.89,1.693,"up",0.0340526509370153,0.0377949395838536,"LOC100361945","null","chr6","+","mRNARGD6581377_t00","coding",139478471,139487295,40,null,"NA","mRNARGD6581377_t00","Rat Genome Database","null","chr6",100,100,{"$nulls":24},"Coding",5.29,6.42,5.23,5.03,4.8,4.83]
["TC0400001732.rn.1",11.48,12.78,-2.462,"down",0.0344233918541561,0.0380799044703907,"Necap1","NECAP endocytosis associated 1","chr4","+","NM_001029919","coding",155709470,155724802,120,"4q42",312694,"NM_001029919","RefSeq","Rattus norvegicus NECAP endocytosis associated 1 (Necap1), mRNA.","chr4",100,100,"NM_001029919","P69682","NM_001029919","Rn.58356","brain| connective tissue| embryonic tissue| eye| heart| kidney| lung| nerve| ovary| pancreas| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| juvenile| adult","NM_001029919","GO:0006897","endocytosis","inferred from electronic annotation","NM_001029919","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001029919","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000013272","Pfam","IPR012466","Adaptin ear-binding coat-associated protein 1 NECAP-1","Coding",11.5,11.52,11.43,12.72,12.82,12.81]
["TC1200000571.rn.1",6.62,3.96,6.32,"up",0.0345250688117677,0.0381656465781607,"LOC382133","similar to RIKEN cDNA 1700029H17, mRNA (cDNA clone MGC:107099 IMAGE:6742357), complete cds., predicted gene, 20798","chr12","+","MTA_TR0Y00000283.mm","coding",35737088,35741968,40,null,"NA","MTA_TR0Y00000283.mm","MTA2Rn6","similar to RIKEN cDNA 1700029H17, mRNA (cDNA clone MGC:107099 IMAGE:6742357), complete cds., predicted gene, 20798","chr12",100,100,{"$nulls":24},"Coding",5.97,7.44,6.44,3.99,3.88,4.01]
["TC0400000509.rn.1",4.32,3.96,1.283,"up",0.0351573267902742,0.0386456953536577,"Hilpda","ENCODES a protein that exhibits receptor binding (ortholog) AND  INVOLVED IN autocrine signaling (ortholog) AND  positive regulation of cell proliferation (ortholog) AND  positive regulation of cytokine production (ortholog) AND  FOUND IN cell surface (ortholog) AND  extracellular space (ortholog) AND  lipid particle (ortholog) AND  INTERACTS WITH manganese(II) chloride AND  1 10-phenanthroline (ortholog) AND  2-butoxyethanol (ortholog)","chr4","+","mRNARGD7694043_1","coding",56547176,56550584,40,null,"NA","mRNARGD7694043_1","Rat Genome Database","ENCODES a protein that exhibits receptor binding (ortholog) AND  INVOLVED IN autocrine signaling (ortholog) AND  positive regulation of cell proliferation (ortholog) AND  positive regulation of cytokine production (ortholog) AND  FOUND IN cell surface (ortholog) AND  extracellular space (ortholog) AND  lipid particle (ortholog) AND  INTERACTS WITH manganese(II) chloride AND  1 10-phenanthroline (ortholog) AND  2-butoxyethanol (ortholog)","chr4",100,100,{"$nulls":24},"Coding",4.36,4.17,4.43,3.93,4.05,3.89]
["TC0200004456.rn.1",8.47,8.79,-1.248,"down",0.0352972502422669,0.0387700622167827,"Gstm4","glutathione S-transferase mu 4","chr2","-","NM_001024304","coding",210834018,210839242,90,"2q34",499689,"NM_001024304","RefSeq","Rattus norvegicus glutathione S-transferase mu 4 (Gstm4), mRNA.","chr2",100,100,"NM_001024304","B6DYQ3","NM_001024304","Rn.198607","brain| heart| liver| pancreas| placenta| prostate| thymus|tailbud embryo| juvenile| adult","NM_001024304","GO:0006749","glutathione metabolic process","not recorded","NM_001024304","GO:0005737","cytoplasm","not recorded","NM_001024304","GO:0004364","glutathione transferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025994","Pfam","IPR004045","Glutathione S-transferase, N-terminal","Coding",8.52,8.46,8.43,9.06,8.65,8.66]
["TC0X00001260.rn.1",6.48,5.52,1.945,"up",0.0357617072490147,0.0391218978917208,null,null,"chrX","+",null,"coding",153394086,153448248,30,null,"NA","ENSRNOT00000073922","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:149121324:149174515:1 gene:ENSRNOG00000046726 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000073922","M0RE16",{"$nulls":22},"Coding",6.26,7.28,5.9,5.33,5.34,5.89]
["TC0900001431.rn.1",10.39,12.33,-3.837,"down",0.0363036860540691,0.039515717178096,"LOC100360856","INTERACTS WITH bilirubin (ortholog) AND  bisphenol A (ortholog) AND  copper atom (ortholog)","chr9","-","mRNARGD6644169_1","coding",8624285,8632931,50,null,"NA","mRNARGD6644169_1","Rat Genome Database","INTERACTS WITH bilirubin (ortholog) AND  bisphenol A (ortholog) AND  copper atom (ortholog)","chr9",100,100,"ENSRNOT00000043269","F1LPU0","ENSRNOT00000043269","Rn.233706",{"$nulls":16},"ENSRNOT00000043269","Pfam","IPR006907","Domain of unknown function DUF622","Coding",10.31,10.59,10.27,12.17,12.46,12.35]
["TC0400003662.rn.1",7.37,8.25,-1.84,"down",0.0366278421479353,0.0397967704069356,null,null,"chr4","-",null,"coding",153324955,153326418,8,null,"NA","ENSRNOT00000073075","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:220415099:220416562:-1 gene:ENSRNOG00000047438 gene_biotype:protein_coding transcript_biotype:protein_coding","chr4",100,100,"ENSRNOT00000073075","M0RDD2",{"$nulls":22},"Coding",7.45,6.87,7.78,8.43,8.25,8.08]
["TC0100006494.rn.1",7.37,7.85,-1.395,"down",0.0369157213631084,0.0400114179695861,"Coq7","coenzyme Q7 homolog, ubiquinone (yeast)","chr1","-","NM_012785","coding",188174879,188191002,100,"1q35",25249,"NM_012785","RefSeq","Rattus norvegicus coenzyme Q7 homolog, ubiquinone (yeast) (Coq7), mRNA.","chr1",100,100,"NM_012785","Q63619","NM_012785","Rn.6981","brain| eye| heart| muscle| ovary| prostate| fetus| adult","NM_012785","GO:0001306","age-dependent response to oxidative stress","inferred from electronic annotation","NM_012785","GO:0005634","nucleus","inferred from electronic annotation","NM_012785","GO:0046872","metal ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000022988","Pfam","IPR011566","Ubiquinone biosynthesis protein Coq7","Coding",7.54,7,7.58,8.09,7.87,7.6]
["TC0100002189.rn.1",7.38,6.43,1.932,"up",0.0374100878873871,0.0403734242477511,null,null,"chr1","+",null,"coding",167665572,167666114,30,null,"NA","ENSRNOT00000071449","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:173851659:173852201:1 gene:ENSRNOG00000050986 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000071449","M0R630",{"$nulls":22},"Coding",7.18,7.86,7.1,6.43,6.46,6.4]
["TC0800001429.rn.1",8.51,8.19,1.248,"up",0.0377023310703598,0.0406080848848723,"Topbp1","topoisomerase (DNA) II binding protein 1","chr8","+","ENSRNOT00000013265","coding",111790635,111834885,390,"8q32",315969,"ENSRNOT00000013265","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:111183198:111226187:1 gene:ENSRNOG00000009789 gene_biotype:protein_coding transcript_biotype:protein_coding","chr8",100,100,"ENSRNOT00000013265","D3ZRG0",{"$nulls":3},"ENSRNOT00000013265","GO:0006974","cellular response to DNA damage stimulus","inferred from electronic annotation","ENSRNOT00000013265","GO:0000794","condensed nuclear chromosome","inferred from electronic annotation","ENSRNOT00000013265","GO:0042802","identical protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000013265","Pfam","IPR001357","BRCT domain","Coding",8.44,8.44,8.65,8.13,8.22,8.21]
["TC1000002517.rn.1",7.89,9.7,-3.506,"down",0.0381501363664017,0.0409779881370268,"Kcnip1","Kv channel-interacting protein 1","chr10","-","NM_001261387","coding",18558128,18942677,139,"10q12",65023,"NM_001261387","RefSeq","Rattus norvegicus Kv channel-interacting protein 1 (Kcnip1), transcript variant 1, mRNA.","chr10",100,100,"NM_001261387","Q8R426","NM_001261387","Rn.20530","brain| muscle| pancreas","NM_001261387","GO:0034765","regulation of ion transmembrane transport","inferred from electronic annotation","NM_001261387","GO:0005886","plasma membrane","inferred from direct assay","NM_001261387","GO:0005244","voltage-gated ion channel activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007187","Pfam","IPR002048","EF-hand domain","Coding",7.95,7.78,7.95,9.9,10.06,9.15]
["TC0300003847.rn.1",10.79,14.08,-9.781,"down",0.0382428022914956,0.0410429001286484,"Ano3","anoctamin 3","chr3","-","ENSRNOT00000006349","coding",101840645,102151567,300,"3q33-q34",311287,"ENSRNOT00000006349","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:108441385:108751667:-1 gene:ENSRNOG00000004731 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000006349","F1M0A0",{"$nulls":3},"ENSRNOT00000006349","GO:0015914","phospholipid transport","not recorded","ENSRNOT00000006349","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000006349","GO:0005229","intracellular calcium activated chloride channel activity","not recorded",{"$nulls":3},"ENSRNOT00000006349","Pfam","IPR007632","Anoctamin","Coding",10.73,10.84,10.81,14.05,14.13,14.05]
["TC0600000080.rn.1",9.11,9.56,-1.366,"down",0.0389547114196337,0.0416163771261044,"Mta3","metastasis associated 3","chr6","+","ENSRNOT00000061921","coding",6907005,7036929,260,null,"NA","ENSRNOT00000061921","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:6:6899431:6981336:1 gene:ENSRNOG00000004685 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000061921","D3ZPH3",{"$nulls":3},"ENSRNOT00000061921","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000061921","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000061921","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000061921","Pfam","IPR000679","Zinc finger, GATA-type","Coding",9.16,8.99,9.19,9.56,9.72,9.4]
["TC1500001686.rn.1",10.85,12.36,-2.848,"down",0.0390904334125488,0.0417254466516766,"Slc22a17","solute carrier family 22, member 17","chr15","-","NM_177421","coding",33569821,33576972,181,"15p13",305886,"NM_177421","RefSeq","Rattus norvegicus solute carrier family 22, member 17 (Slc22a17), mRNA.","chr15",100,100,"NM_177421","Q9P290","NM_177421","Rn.7312","adrenal gland| brain| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| nerve| ovary| pancreas| pituitary gland| prostate| small intestine| spleen| testis| thymus| metamorphosing embryo| juvenile| adult","NM_177421","GO:0006811","ion transport","inferred from electronic annotation","NM_177421","GO:0005774","vacuolar membrane","inferred from electronic annotation","NM_177421","GO:0004888","transmembrane signaling receptor activity","not recorded",{"$nulls":3},"ENSRNOT00000021851","Pfam","IPR005828","General substrate transporter","Coding",10.85,10.64,11.05,12.45,12.36,12.27]
["TC0400003711.rn.1",4.09,3.73,1.283,"up",0.039839317162976,0.0423142022890893,"Clec4e","C-type lectin domain family 4, member E","chr4","-","NM_001005897","coding",156271087,156276243,60,"4q42",450223,"NM_001005897","RefSeq","Rattus norvegicus C-type lectin domain family 4, member E (Clec4e), mRNA.","chr4",100,100,"NM_001005897","Q67EQ1","NM_001005897","Rn.127512","connective tissue| adult","NM_001005897","GO:0006955","immune response","inferred from electronic annotation","NM_001005897","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001005897","GO:0004872","receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000013562","Pfam","IPR001304","C-type lectin","Coding",4.21,4.22,3.85,3.83,3.49,3.86]
["TC0200005006.rn.1",10.45,12.86,-5.315,"down",0.0403479875679904,0.0427238580947005,"Slc6a17","solute carrier family 6 (neutral amino acid transporter), member 17","chr2","-","NM_001033079","coding",210249663,210299770,120,null,613226,"NM_001033079","RefSeq","Rattus norvegicus solute carrier family 6 (neutral amino acid transporter), member 17 (Slc6a17), mRNA.","chr2",100,100,"NM_001033079","P31662","NM_001033079","Rn.186904","brain| heart| pituitary gland| prostate| juvenile| adult","NM_001033079","GO:0006836","neurotransmitter transport","inferred from electronic annotation","NM_001033079","GO:0005887","integral component of plasma membrane","inferred from electronic annotation","NM_001033079","GO:0005328","neurotransmitter:sodium symporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000075653","Pfam","IPR000175","Sodium:neurotransmitter symporter","Coding",10.43,10.38,10.54,12.81,12.97,12.8]
["TC0600000851.rn.1",8.84,11.23,-5.242,"down",0.0404183683558508,0.0427801289732808,"Lrfn5","leucine rich repeat and fibronectin type III domain containing 5","chr6","+","NM_001108024","coding",83082526,83438601,100,"6q23",314164,"NM_001108024","RefSeq","Rattus norvegicus leucine rich repeat and fibronectin type III domain containing 5 (Lrfn5), mRNA.","chr6",100,100,"NM_001108024","D4A0W5","NM_001108024","Rn.224998","brain| adult",{"$nulls":4},"NM_001108024","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000007600","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007600","Pfam","IPR001611","Leucine-rich repeat","Coding",8.58,8.95,8.98,11.21,11.2,11.28]
["TC1100000546.rn.1",10.02,10.88,-1.815,"down",0.0406947569520926,0.0430019236580571,"Dzip3","DAZ interacting zinc finger protein 3","chr11","+","ENSRNOT00000002678","coding",54404787,54475366,456,"11q21",303963,"ENSRNOT00000002678","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:11:57580223:57635241:1 gene:ENSRNOG00000001956 gene_biotype:protein_coding transcript_biotype:protein_coding","chr11",100,100,"ENSRNOT00000002678","D4A1V8",{"$nulls":3},"ENSRNOT00000002678","GO:0000209","protein polyubiquitination","inferred from electronic annotation","ENSRNOT00000002678","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000002678","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000002678","Pfam","IPR018957","Zinc finger, C3HC4 RING-type","Coding",9.73,10.16,10.16,10.66,10.92,11.05]
["TC0200001525.rn.1",6.22,5.33,1.853,"up",0.0411331235700793,0.0433138954655183,"Nes","nestin","chr2","+","NM_012987","coding",187343137,187352972,145,"2q34",25491,"NM_012987","RefSeq","Rattus norvegicus nestin (Nes), mRNA.","chr2",100,100,"NM_012987","P21263","NM_012987","Rn.9701","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| lung| prostate|tailbud embryo| metamorphosing embryo| adult","NM_012987","GO:0000086","G2/M transition of mitotic cell cycle","not recorded","NM_012987","GO:0005622","intracellular","not recorded","NM_012987","GO:0005198","structural molecule activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000025314","Pfam","IPR001664","Intermediate filament protein","Coding",6.1,6.45,6.1,5.33,5.52,5.15]
["TC0100003580.rn.1",10.03,9.4,1.548,"up",0.0414811346234207,0.0435652230679227,"LOC100911865","ENCODES a protein that exhibits Rab GTPase activator activity (inferred) AND  INVOLVED IN positive regulation of Rab GTPase activity (inferred) AND  INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND  2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND  2-methylcholine (ortholog)","chr1","+","mRNARGD6490059_1","coding",257720817,257730952,70,null,"NA","mRNARGD6490059_1","Rat Genome Database","ENCODES a protein that exhibits Rab GTPase activator activity (inferred) AND  INVOLVED IN positive regulation of Rab GTPase activity (inferred) AND  INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND  2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND  2-methylcholine (ortholog)","chr1",100,100,"ENSRNOT00000075515","M0R9H1",{"$nulls":3},"ENSRNOT00000075515","GO:0032313","regulation of Rab GTPase activity","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000075515","GO:0005097","Rab GTPase activator activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000075515","Pfam","IPR000195","Rab-GTPase-TBC domain","Coding",10.18,10.11,9.8,9.19,9.8,9.22]
["TC0200002873.rn.1",4.62,3.88,1.67,"up",0.0418441568657325,0.043848395301601,"Gapt","Grb2-binding adaptor protein, transmembrane","chr2","-","NM_001109491","coding",41869556,41874111,40,"2q14",686075,"NM_001109491","RefSeq","Rattus norvegicus Grb2-binding adaptor protein, transmembrane (Gapt), mRNA.","chr2",100,100,"NM_001109491","D4ACG3","NM_001109491","Rn.154391","brain| adult",{"$nulls":4},"NM_001109491","GO:0016021","integral component of membrane","inferred from electronic annotation",{"$nulls":7},"ENSRNOT00000039720","Pfam","IPR021082","Protein GAPT","Coding",4.53,4.44,4.9,4.14,3.75,3.75]
["TC1400001504.rn.1",4.66,4.1,1.474,"up",0.0421654733315125,0.0440760884126672,"Cxcl1","chemokine (C-X-C motif) ligand 1","chr14","-","NM_030845","coding",18743678,18745462,40,"14p22",81503,"NM_030845","RefSeq","Rattus norvegicus chemokine (C-X-C motif) ligand 1 (Cxcl1), mRNA.","chr14",100,100,"NM_030845","P14095","NM_030845","Rn.10907","pancreas| adult","NM_030845","GO:0001975","response to amphetamine","inferred from expression pattern","NM_030845","GO:0005615","extracellular space","inferred from direct assay","NM_030845","GO:0008009","chemokine activity","inferred from direct assay",{"$nulls":3},"ENSRNOT00000003778","Pfam","IPR001811","Chemokine interleukin-8-like domain","Coding",4.68,4.71,4.59,4.24,3.94,4.13]
["TC1300000648.rn.1",4.48,4.99,-1.424,"down",0.0425425756967164,0.0443555058176376,null,null,"chr13","+",null,"coding",82316462,82317683,30,null,"NA","ENSRNOT00000003646","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:87195318:87196539:1 gene:ENSRNOG00000002712 gene_biotype:protein_coding transcript_biotype:protein_coding","chr13",100,100,"ENSRNOT00000003646","D3ZKJ9",{"$nulls":3},"ENSRNOT00000003646","GO:0006457","protein folding","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000003646","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000003646","Pfam","IPR002130","Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain","Coding",4.58,4.58,4.28,5.1,4.74,5.14]
["TC1000002131.rn.1",4.07,3.34,1.659,"up",0.0430128930375281,0.0447143605598385,"LOC100910373","ENCODES a protein that exhibits G-protein coupled receptor activity (inferred) AND  INVOLVED IN G-protein coupled receptor signaling pathway (inferred) AND  FOUND IN integral component of membrane (inferred) AND  plasma membrane (inferred)","chr10","+","mRNARGD6498968_1","coding",111631678,111638267,50,null,"NA","mRNARGD6498968_1","Rat Genome Database","ENCODES a protein that exhibits G-protein coupled receptor activity (inferred) AND  INVOLVED IN G-protein coupled receptor signaling pathway (inferred) AND  FOUND IN integral component of membrane (inferred) AND  plasma membrane (inferred)","chr10",100,100,{"$nulls":24},"Coding",3.94,4.65,3.62,3.12,3.54,3.37]
["TC0200000844.rn.1",6.11,5.68,1.347,"up",0.0434301341309732,0.045037601336585,"Mtfr1","mitochondrial fission regulator 1","chr2","+","NM_001100977","coding",103988797,104040914,158,"2q24",311403,"NM_001100977","RefSeq","Rattus norvegicus mitochondrial fission regulator 1 (Mtfr1), mRNA.","chr2",100,100,"NM_001100977","G3V9A7","NM_001100977","Rn.14754","adrenal gland| eye| heart| kidney| liver| lung| pancreas| pituitary gland| placenta| prostate| testis| juvenile| adult","NM_001100977","GO:0000266","mitochondrial fission","inferred from sequence or structural similarity","NM_001100977","GO:0005737","cytoplasm","not recorded",{"$nulls":7},"ENSRNOT00000045586","Pfam","IPR007972","Mitochondrial fission regulator 1","Coding",5.95,6.27,6.12,5.6,5.68,5.75]
["TC0500001535.rn.1",7.91,8.5,-1.505,"down",0.0440580404781395,0.0455527778790406,null,null,"chr5","+",null,"coding",147636964,147637401,30,null,"NA","ENSRNOT00000043325","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:151356275:151356712:1 gene:ENSRNOG00000030173 gene_biotype:protein_coding transcript_biotype:protein_coding","chr5",100,100,"ENSRNOT00000043325","F1LTL2",{"$nulls":22},"Coding",8.03,7.5,8.2,8.34,8.77,8.39]
["TC0100000779.rn.1",4.15,3.48,1.591,"up",0.0443249128246368,0.0457285875556726,"Vom1r109","vomeronasal 1 receptor 109 (Vom1r109), mRNA","chr1","+","NM_001009509_2","coding",68239314,68240174,30,null,"NA","NM_001009509_2","RefSeq","vomeronasal 1 receptor 109 (Vom1r109), mRNA","chr1",100,100,"ENSRNOT00000070823","Q5J3F0","ENSRNOT00000070823","Rn.144524",null,"ENSRNOT00000070823","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","ENSRNOT00000070823","GO:0016021","integral component of membrane","inferred from electronic annotation","ENSRNOT00000070823","GO:0016503","pheromone receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000070823","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",3.88,4.82,3.74,3.67,3.58,3.18]
["TC1500000526.rn.1",4.87,4.49,1.301,"up",0.0445596483469718,0.0458829668900572,"Khnyn","KH and NYN domain containing","chr15","+","ENSRNOT00000027802","coding",34551588,34565410,187,"15p13",498517,"ENSRNOT00000027802","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:38440708:38450025:1 gene:ENSRNOG00000020506 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000027802","D3Z8M3",{"$nulls":18},"ENSRNOT00000027802","Pfam","IPR021869","Ribonuclease Zc3h12a-like","Coding",4.86,4.86,4.9,4.48,4.52,4.47]
["TC0100005328.rn.1",4.18,3.68,1.414,"up",0.0453239569542413,0.046482610476569,"Siglec8","sialic acid binding Ig-like lectin 8","chr1","-","ENSRNOT00000048947","coding",99578000,99587169,80,"1q22",292846,"ENSRNOT00000048947","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:1:100647307:100655905:-1 gene:ENSRNOG00000022640 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000048947","F1M8J5","ENSRNOT00000048947","Rn.144786","lung| juvenile","ENSRNOT00000048947","GO:0007155","cell adhesion","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000048947","GO:0004872","receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000048947","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",4.27,4.07,4.21,3.75,3.54,3.76]
["TC0700000417.rn.1",5.01,4.66,1.275,"up",0.0458208278854209,0.0468731877508772,"Aldh1l2","aldehyde dehydrogenase 1 family, member L2","chr7","+","NM_001191778","coding",26375866,26425968,352,"7q13",299699,"NM_001191778","RefSeq","Rattus norvegicus aldehyde dehydrogenase 1 family, member L2 (Aldh1l2), nuclear gene encoding mitochondrial protein, mRNA.","chr7",100,100,"ENSRNOT00000059639","D3ZTP0","NM_001191778","Rn.17900","adipose tissue| brain| liver| pineal gland| placenta| metamorphosing embryo| adult","NM_001191778","GO:0009058","biosynthetic process","inferred from electronic annotation","NM_001191778","GO:0005739","mitochondrion","inferred from electronic annotation","NM_001191778","GO:0008168","methyltransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000059639","Pfam","IPR002376","Formyl transferase, N-terminal","Coding",5.06,5.03,4.93,4.72,4.64,4.61]
["TC0800000487.rn.1",3.59,3.29,1.231,"up",0.0459150379767158,0.0469225864627327,"Olr1308","olfactory receptor 1308","chr8","+","NM_001000795","coding",43348973,43349905,30,"8q22",405079,"NM_001000795","RefSeq","Rattus norvegicus olfactory receptor 1308 (Olr1308), mRNA.","chr8",100,100,"NM_001000795","D4A0R7","NM_001000795","Rn.143487",null,"NM_001000795","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001000795","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001000795","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000007862","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",3.49,3.56,3.72,3.42,3.11,3.34]
["TC0900000024.rn.1",6.74,6.39,1.275,"up",0.0459356577301057,0.0469381359076274,"LOC679917","similar to U2 small nuclear RNA auxiliary factor 1-like 4","chr9","+","LOC679917.aSep08-unspliced","coding",2822767,2827013,50,null,"NA","LOC679917.aSep08-unspliced","Ace View","similar to U2 small nuclear RNA auxiliary factor 1-like 4","chr9",100,100,{"$nulls":24},"Coding",6.77,6.92,6.54,6.28,6.47,6.43]
["TC1400001453.rn.1",6.52,4.92,3.031,"up",0.0459483754527687,0.0469483695070905,"Cxcl13","chemokine (C-X-C motif) ligand 13","chr14","-","NM_001017496","coding",15253146,15258220,70,"14p22",498335,"NM_001017496","RefSeq","Rattus norvegicus chemokine (C-X-C motif) ligand 13 (Cxcl13), mRNA.","chr14",100,100,"NM_001017496","Q5I0J6","NM_001017496","Rn.6917","connective tissue| embryonic tissue| eye| heart| kidney| lung| ovary| prostate| spleen| metamorphosing embryo| fetus| adult","NM_001017496","GO:0002518","lymphocyte chemotaxis across high endothelial venule","not recorded","NM_001017496","GO:0005576","extracellular region","inferred from electronic annotation","NM_001017496","GO:0008009","chemokine activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000039383","Pfam","IPR001811","Chemokine interleukin-8-like domain","Coding",6.69,6.34,6.54,5.13,5.05,4.58]
["TC1400000790.rn.1",10.39,10.66,-1.206,"down",0.0459801869547596,0.0469685083973178,"Mrfap1","Morf4 family associated protein 1","chr14","+","NM_001009264","coding",78973077,78975174,81,"14q21",282585,"NM_001009264","RefSeq","Rattus norvegicus Morf4 family associated protein 1 (Mrfap1), mRNA.","chr14",100,100,"NM_001009264","Q5M820","NM_001009264","Rn.3393","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult",{"$nulls":4},"NM_001009264","GO:0005634","nucleus","inferred from electronic annotation","NM_001009264","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":7},"Coding",10.28,10.41,10.48,10.61,10.83,10.54]
["TC0700003509.rn.1",6.75,6.32,1.347,"up",0.0459847629454451,0.046968972606887,"Sun2","Sad1 and UNC84 domain containing 2","chr7","-","ENSRNOT00000020852","coding",120950275,120967575,240,"7q34",315135,"ENSRNOT00000020852","ENSEMBL","ensembl:known chromosome:Rnor_5.0:7:120941356:120958528:-1 gene:ENSRNOG00000015177 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000020852","D3ZJ67","ENSRNOT00000020852","Rn.2240","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| ovary| pineal gland| placenta| prostate| spleen| thymus| metamorphosing embryo| juvenile| adult","ENSRNOT00000020852","GO:0006998","nuclear envelope organization","inferred from electronic annotation","ENSRNOT00000020852","GO:0000784","nuclear chromosome, telomeric region","inferred from electronic annotation","ENSRNOT00000020852","GO:0005521","lamin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000020852","Pfam","IPR012919","Sad1/UNC-like, C-terminal","Coding",6.67,6.67,6.92,6.13,6.6,6.24]
["TSUnmapped00000165.rn.1",5.83,5.12,1.636,"up",0.0461556025647036,0.0471102281069079,"Fam60a","family with sequence similarity 60, member A",null,null,"NM_001134711","coding","NA","NA",30,null,686611,"NM_001134711","RefSeq","Rattus norvegicus family with sequence similarity 60, member A (Fam60a), transcript variant 1, mRNA.",null,100,100,"NM_001134711","B4F781","NM_001134711","Rn.9154","ovary| prostate| adult","NM_001134711","GO:0030336","negative regulation of cell migration","not recorded","NM_001134711","GO:0016580","Sin3 complex","not recorded",{"$nulls":11},"Coding",5.57,5.75,6.17,5.32,5.08,4.96]
["TC0900002700.rn.1",12.73,14.8,-4.199,"down",0.0461987653962758,0.0471404343103094,"LOC501224","similar to RIKEN cDNA 2610042L04, mRNA (cDNA clone MGC:94005 IMAGE:7115745), complete cds.","chr9","+","BC079060_2","coding",12343724,12352001,50,null,"NA","BC079060_2","GenBank","similar to RIKEN cDNA 2610042L04, mRNA (cDNA clone MGC:94005 IMAGE:7115745), complete cds.","chr9",100,100,"ENSRNOT00000074599","M0RD07",{"$nulls":18},"ENSRNOT00000074599","Pfam","IPR006907","Domain of unknown function DUF622","Coding",12.66,12.85,12.69,14.54,14.83,15.04]
["TC1000002133.rn.1",10.27,10,1.206,"up",0.0462060804136031,0.0471451290963113,"LOC102553193","zinc finger protein 120-like","chr10","+","mRNARGD7612129_1","coding",112121764,112149233,40,null,"NA","mRNARGD7612129_1","Rat Genome Database","zinc finger protein 120-like","chr10",100,100,{"$nulls":24},"Coding",10.19,10.48,10.15,10.03,10.15,9.81]
["TC1100000202.rn.1",6.77,5.77,2,"up",0.0462295293630294,0.0471607443366915,"LOC102551304","keratin-associated protein 20-2-like","chr11","+","mRNARGD7607008_1","coding",29056153,29056338,30,null,"NA","mRNARGD7607008_1","Rat Genome Database","keratin-associated protein 20-2-like","chr11",100,100,{"$nulls":24},"Coding",6.36,7.54,6.41,5.87,5.55,5.9]
["TC1500000257.rn.1",7.95,7.63,1.248,"up",0.046281812708859,0.0472002212508419,"Tmem260","transmembrane protein 260","chr15","+","NM_001170475","coding",25294452,25363442,298,"15p14",361030,"NM_001170475","RefSeq","Rattus norvegicus similar to Protein C14orf101 homolog (RGD1562018), mRNA.","chr15",100,100,"NM_001170475","B5DEJ7","NM_001170475","Rn.26760","brain| embryonic tissue| eye| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| metamorphosing embryo| adult",{"$nulls":15},"ENSRNOT00000017871","Pfam","IPR021280","Protein of unknown function DUF2723","Coding",7.89,7.9,8.06,7.58,7.8,7.52]
["TC1500001611.rn.1",4.86,4.38,1.395,"up",0.0463137650957591,0.0472272623116191,"ENSMUSG00000094562","T cell receptor alpha variable 13-4-DV7","chr15","-","MTA_TR1400002171.mm","coding",29453596,29454160,30,null,"NA","MTA_TR1400002171.mm","MTA2Rn6","T cell receptor alpha variable 13-4-DV7","chr15",100,100,{"$nulls":24},"Coding",4.58,5.31,4.7,4.43,4.48,4.23]
["TC2000001070.rn.1",10.74,11.34,-1.516,"down",0.0463771797115895,0.0472689201645694,"Rnf5","ring finger protein 5, E3 ubiquitin protein ligase","chr20","-","NM_001109025","coding",4366244,4368690,70,"20p12",407784,"NM_001109025","RefSeq","Rattus norvegicus ring finger protein 5, E3 ubiquitin protein ligase (Rnf5), mRNA.","chr20",100,100,"NM_001109025","Q5M807","NM_001109025","Rn.136937","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| kidney| liver| lung| nerve| ovary| pancreas| placenta| prostate| small intestine| spleen| metamorphosing embryo| juvenile| adult","NM_001109025","GO:0009617","response to bacterium","not recorded","NM_001109025","GO:0005789","endoplasmic reticulum membrane","inferred from electronic annotation","NM_001109025","GO:0004842","ubiquitin-protein transferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000501","Pfam","IPR018957","Zinc finger, C3HC4 RING-type","Coding",10.82,10.56,10.84,11.4,11.59,11.02]
["TC0700002541.rn.1",13.23,13.69,-1.376,"down",0.0463818285766557,0.0472689201645694,"Mrpl42","mitochondrial ribosomal protein L42","chr7","-","NM_001106782","coding",36573654,36597462,50,"7q13",299743,"NM_001106782","RefSeq","Rattus norvegicus mitochondrial ribosomal protein L42 (Mrpl42), mRNA.","chr7",100,100,"NM_001106782","B5DEP4","NM_001106782","Rn.11","connective tissue| dorsal root ganglion| eye| heart| kidney| liver| nerve| ovary| pituitary gland| prostate| testis| fetus| juvenile| adult",{"$nulls":4},"NM_001106782","GO:0005739","mitochondrion","inferred from electronic annotation","NM_001106782","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":7},"Coding",13.4,12.86,13.44,13.99,13.55,13.52]
["TC0600000815.rn.1",7.62,8.08,-1.376,"down",0.0464133531475882,0.0472908831805146,null,null,"chr6","+",null,"coding",77680253,77681738,30,null,"NA","ENSRNOT00000059408","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:87205437:87206922:1 gene:ENSRNOG00000022942 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000059408","D4A073",{"$nulls":3},"ENSRNOT00000059408","GO:0009058","biosynthetic process","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000059408","Pfam","IPR001296","Glycosyl transferase, family 1","Coding",7.63,7.64,7.59,7.99,8.56,7.7]
["TC0600003253.rn.1",5.94,5.61,1.257,"up",0.0464142690314083,0.0472908831805146,"Cdca4","cell division cycle associated 4","chr6","-","NM_001037214","coding",137396137,137421283,94,"6q32",500727,"NM_001037214","RefSeq","Rattus norvegicus cell division cycle associated 4 (Cdca4), mRNA.","chr6",100,100,"NM_001037214","Q3B7C7","NM_001037214","Rn.32426","brain| connective tissue| embryonic tissue| heart| lung| ovary| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001037214","GO:0051301","cell division","inferred from electronic annotation","NM_001037214","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000018596","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018596","Pfam","IPR009263","SERTA domain","Coding",5.89,5.93,6,5.65,5.66,5.51]
["TC1000000372.rn.1",6.22,4.16,4.17,"up",0.0464428360490267,0.0473116646145697,"LOC102551063","putative proline-rich protein 21-like","chr10","+","mRNARGD7538282_1","coding",21123896,21124842,30,null,"NA","mRNARGD7538282_1","Rat Genome Database","putative proline-rich protein 21-like","chr10",100,100,{"$nulls":24},"Coding",5.63,7.05,5.97,4.43,3.9,4.14]
["TC0900001664.rn.1",11.15,10.24,1.879,"up",0.0464477990775777,0.0473139458028853,"Tnfrsf21","tumor necrosis factor receptor superfamily, member 21","chr9","-","NM_001108207","coding",20546159,20621051,60,"9q12",316256,"NM_001108207","RefSeq","Rattus norvegicus tumor necrosis factor receptor superfamily, member 21 (Tnfrsf21), mRNA.","chr9",100,100,"NM_001108207","D3ZF92","NM_001108207","Rn.98293","brain| dorsal root ganglion| eye| kidney| liver| lung| muscle| pancreas| prostate| juvenile| adult","NM_001108207","GO:0001783","B cell apoptotic process","not recorded","NM_001108207","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000015918","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000015918","Pfam","IPR000488","Death domain","Coding",11.03,10.88,11.55,10.25,10.28,10.2]
["TC0500000903.rn.1",11.81,14.21,-5.278,"down",0.0464789166911937,0.047342867470548,"Sh3gl2","SH3-domain GRB2-like 2","chr5","+","NM_053935","coding",103479767,103655716,130,"5q31",116743,"NM_053935","RefSeq","Rattus norvegicus SH3-domain GRB2-like 2 (Sh3gl2), mRNA.","chr5",100,100,"NM_053935","O35179","NM_053935","Rn.10787","brain| colon| dorsal root ganglion| prostate| fetus| adult","NM_053935","GO:0002090","regulation of receptor internalization","inferred from electronic annotation","NM_053935","GO:0005623","cell","not recorded","NM_053935","GO:0005515","protein binding","inferred from physical interaction",{"$nulls":3},"ENSRNOT00000008999","Pfam","IPR001452","SH3 domain","Coding",11.92,11.92,11.6,14.14,14.22,14.26]
["TC1000002518.rn.1",9.83,8.07,3.387,"up",0.0465106009434474,0.0473668082891848,"LOC102547200","mucin-22-like","chr10","-","mRNARGD7561786_1","coding",18595431,18602530,30,null,"NA","mRNARGD7561786_1","Rat Genome Database","mucin-22-like","chr10",100,100,{"$nulls":24},"Coding",10.09,11.19,8.22,7.79,7.86,8.55]
["TC0100001368.rn.1",5.48,4.13,2.549,"up",0.0465981446941812,0.0474337164654334,null,null,"chr1","+",null,"coding",95503188,95503613,30,null,"NA","ENSRNOT00000072780","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:96594297:96594722:1 gene:ENSRNOG00000045901 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000072780","M0R3Q8",{"$nulls":3},"ENSRNOT00000072780","GO:0007276","gamete generation","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000072780","Pfam","IPR003671","Spindlin/spermiogenesis-specific protein","Coding",5.09,6.54,4.81,4.21,4.22,3.96]
["TC0700002049.rn.1",4.17,3.81,1.283,"up",0.0466329049292666,0.0474635373250302,"Olr960","olfactory receptor 959 (Olr959), mRNA","chr7","-","NM_001000486_2","coding",6970616,6971557,30,null,"NA","NM_001000486_2","RefSeq","olfactory receptor 959 (Olr959), mRNA","chr7",100,100,"ENSRNOT00000050153","D3ZYH6","ENSRNOT00000050153","Rn.225571",null,"ENSRNOT00000050153","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","ENSRNOT00000050153","GO:0005886","plasma membrane","inferred from electronic annotation","ENSRNOT00000050153","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000050153","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",4.35,4.23,3.94,3.54,3.94,3.95]
["TC0300000390.rn.1",4.05,3.65,1.32,"up",0.0466535654120121,0.0474790019785613,"ENSMUSG00000094094","immunoglobulin kappa chain variable 5-45","chr3","+","MTA_TR0600008006.mm","coding",18580302,18580850,30,null,"NA","MTA_TR0600008006.mm","MTA2Rn6","immunoglobulin kappa chain variable 5-45","chr3",100,100,{"$nulls":24},"Coding",3.94,4.43,3.79,3.63,3.79,3.54]
["TC1900000846.rn.1",12.87,12.15,1.647,"up",0.0466607963927185,0.047483579035613,null,null,"chr19","+",null,"coding",57795179,57796197,30,null,"NA","ENSRNOT00000075594","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:19:68505984:68507002:1 gene:ENSRNOG00000049199 gene_biotype:protein_coding transcript_biotype:protein_coding","chr19",100,100,"ENSRNOT00000075594","M0R5M9",{"$nulls":22},"Coding",12.51,13.26,12.85,12.1,12.07,12.29]
["TC0700003761.rn.1",5.72,5.38,1.266,"up",0.0466941207766634,0.0475119433689055,"Pus7l","pseudouridylate synthase 7 homolog (S. cerevisiae)-like","chr7","-","ENSRNOT00000029097","coding",135765307,135803602,152,"7q35",315264,"ENSRNOT00000029097","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:7:135424411:135458044:-1 gene:ENSRNOG00000022570 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000029097","D4ABN2",{"$nulls":3},"ENSRNOT00000029097","GO:0001522","pseudouridine synthesis","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000029097","GO:0003723","RNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000029097","Pfam","IPR001656","Pseudouridine synthase, TruD","Coding",5.65,5.83,5.68,5.53,5.33,5.27]
["TC1700001487.rn.1",12.17,14.84,-6.364,"down",0.0467318013008663,0.0475363424721759,"Cap2","CAP, adenylate cyclase-associated protein, 2 (yeast)","chr17","-","NM_053874","coding",18440732,18592854,209,"17p13",116653,"NM_053874","RefSeq","Rattus norvegicus CAP, adenylate cyclase-associated protein, 2 (yeast) (Cap2), mRNA.","chr17",100,100,"NM_053874","P52481","NM_053874","Rn.10229","brain| heart| placenta| fetus| juvenile| adult","NM_053874","GO:0000902","cell morphogenesis","inferred from electronic annotation","NM_053874","GO:0005886","plasma membrane","inferred from electronic annotation","NM_053874","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000065742","Pfam","IPR013912","Adenylate cyclase-associated CAP, C-terminal","Coding",12.15,12.18,12.18,14.82,14.87,14.83]
["TC1000004376.rn.1",5.62,4.41,2.313,"up",0.0467760458995761,0.0475618528050536,"Tmem106a","transmembrane protein 106A","chr10","+","NM_001024967","coding",89484282,89493294,140,"10q32.1",287722,"NM_001024967","RefSeq","Rattus norvegicus transmembrane protein 106A (Tmem106a), mRNA.","chr10",100,100,"NM_001024967","Q5BK83","NM_001024967","Rn.16484","adrenal gland| kidney| liver| ovary| testis| thymus| juvenile| adult","NM_001024967","GO:0008150","biological_process","no biological data available","NM_001024967","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001024967","GO:0003674","molecular_function","no biological data available",{"$nulls":3},"ENSRNOT00000035523","Pfam","IPR009790","Protein of unknown function DUF1356, TMEM106","Coding",5.67,5.49,5.71,4.45,4.39,4.39]
["TC0X00001996.rn.1",6.17,5.87,1.231,"up",0.046796097316865,0.0475783473275028,null,null,"chrX","-",null,"coding",73807914,73808497,30,null,"NA","ENSRNOT00000029178","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:74612891:74613474:-1 gene:ENSRNOG00000022281 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000029178","D3ZG02",{"$nulls":3},"ENSRNOT00000029178","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000029178","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000029178","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000029178","Pfam","IPR000554","Ribosomal protein S7e","Coding",6.16,6.2,6.16,5.74,6.16,5.7]
["TC0100005295.rn.1",8.73,8.25,1.395,"up",0.0468333489632415,0.0476089714911323,"LOC499136","LRRGT00021","chr1","-","NM_001047937","coding",97783615,97785490,30,"1q22",499136,"NM_001047937","RefSeq","Rattus norvegicus LRRGT00021 (LOC499136), mRNA.","chr1",100,100,"NM_001047937","Q6TXH8","NM_001047937","Rn.130458",null,"NM_001047937","GO:0006605","protein targeting","inferred from electronic annotation","NM_001047937","GO:0016020","membrane","inferred from electronic annotation","NM_001047937","GO:0015450","P-P-bond-hydrolysis-driven protein transmembrane transporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019364","Pfam","IPR001901","Protein translocase complex, SecE/Sec61-gamma subunit","Coding",8.76,8.9,8.52,8.25,8.02,8.49]
["TC0500000605.rn.1",6.62,5.21,2.657,"up",0.0468461395002268,0.0476136147246176,"Col15a1","collagen, type XV, alpha 1","chr5","+","NM_001100535","coding",62840303,62950240,473,"5q22",298069,"NM_001100535","RefSeq","Rattus norvegicus collagen, type XV, alpha 1 (Col15a1), mRNA.","chr5",100,100,"NM_001100535","Q4G024","NM_001100535","Rn.31832","adipose tissue| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| lung| muscle| ovary| pancreas| placenta| prostate| small intestine| spleen| vibrissa| metamorphosing embryo| fetus| juvenile| adult","NM_001100535","GO:0007155","cell adhesion","inferred from electronic annotation","NM_001100535","GO:0005581","collagen trimer","inferred from electronic annotation","NM_001100535","GO:0005198","structural molecule activity","inferred from electronic annotation",{"$nulls":7},"Coding",6.87,6.53,6.46,5.12,5.16,5.35]
["TC0X00000692.rn.1",10.44,9.89,1.464,"up",0.0469403801110775,0.0476926561917019,"LOC680353","similar to 60S ribosomal protein L38","chrX","+","ENSRNOT00000048963","coding",74824499,74824719,30,"Xq31",680353,"ENSRNOT00000048963","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:75627521:75627736:1 gene:ENSRNOG00000033484 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000048963","D3ZZH2",{"$nulls":3},"ENSRNOT00000048963","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000048963","GO:0005840","ribosome","inferred from electronic annotation","ENSRNOT00000048963","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000048963","Pfam","IPR002675","Ribosomal protein L38e","Coding",10.59,10.69,10.05,10.23,9.8,9.63]
["TC0900001415.rn.1",5,4.28,1.647,"up",0.0469680514235896,0.0477141678352299,"RGD1559960","ENCODES a protein that exhibits sulfotransferase activity (inferred) AND  INVOLVED IN metabolic process (inferred) AND  INTERACTS WITH 17beta-estradiol (ortholog) AND  2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND  2-naphthylamine (ortholog)","chr9","-","mRNARGD2714121_1","coding",4868496,4890224,127,null,"NA","mRNARGD2714121_1","Rat Genome Database","ENCODES a protein that exhibits sulfotransferase activity (inferred) AND  INVOLVED IN metabolic process (inferred) AND  INTERACTS WITH 17beta-estradiol (ortholog) AND  2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND  2-naphthylamine (ortholog)","chr9",100,100,"ENSRNOT00000047615","F1LZT0",{"$nulls":3},"ENSRNOT00000047615","GO:0008152","metabolic process","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000047615","GO:0008146","sulfotransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000047615","Pfam","IPR000863","Sulfotransferase domain","Coding",4.86,5.47,4.66,4.28,4.18,4.38]
["TC0300004328.rn.1",9.24,10.85,-3.053,"down",0.0469690459667695,0.0477141678352299,"Dzank1","double zinc ribbon and ankyrin repeat domains 1","chr3","-","ENSRNOT00000029701","coding",138624531,138684531,257,"3q41",311486,"ENSRNOT00000029701","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:145054603:145112674:-1 gene:ENSRNOG00000007440 gene_biotype:protein_coding transcript_biotype:protein_coding","chr3",100,100,"ENSRNOT00000029701","D4A039",{"$nulls":3},"ENSRNOT00000029701","GO:0008150","biological_process","no biological data available","ENSRNOT00000029701","GO:0005575","cellular_component","no biological data available","ENSRNOT00000029701","GO:0008270","zinc ion binding","inferred from electronic annotation",{"$nulls":7},"Coding",9.29,9.14,9.29,10.85,10.92,10.78]
["TC0400000666.rn.1",10.89,10.6,1.223,"up",0.0469703808008099,0.0477141678352299,"Luc7l2","LUC7-like 2 (S. cerevisiae)","chr4","+","NM_001107853","coding",66290333,66357971,334,"4q22",312251,"NM_001107853","RefSeq","Rattus norvegicus LUC7-like 2 (S. cerevisiae) (Luc7l2), mRNA.","chr4",100,100,"NM_001107853","B2RYP6","NM_001107853","Rn.18604","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| liver| lung| muscle| ovary| pancreas| pituitary gland| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001107853","GO:0006376","mRNA splice site selection","inferred from electronic annotation","NM_001107853","GO:0005685","U1 snRNP","inferred from electronic annotation","NM_001107853","GO:0003729","mRNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008557","Pfam","IPR004882","Luc7-related","Coding",10.89,10.89,10.89,10.49,10.42,10.89]
["TC0100002422.rn.1",4.27,3.37,1.866,"up",0.0470127878859713,0.04773551194571,"LOC367545","INVOLVED IN gamete generation (inferred)","chr1","+","mRNARGD6678586_1","coding",182379788,182380581,30,null,"NA","mRNARGD6678586_1","Rat Genome Database","INVOLVED IN gamete generation (inferred)","chr1",100,100,{"$nulls":24},"Coding",3.94,4.87,4,3.38,2.98,3.76]
["TC1400000398.rn.1",4.79,5.22,-1.347,"down",0.0470293502168065,0.0477439566720908,"Pdcl2","phosducin-like 2","chr14","+","ENSRNOT00000002953","coding",34384342,34404916,60,"14p11",498352,"ENSRNOT00000002953","ENSEMBL","ensembl:known chromosome:Rnor_5.0:14:34176028:34190891:1 gene:ENSRNOG00000002169 gene_biotype:protein_coding transcript_biotype:protein_coding","chr14",100,100,"ENSRNOT00000002953","F1M610","ENSRNOT00000002953","Rn.113988","lung| adult",{"$nulls":15},"ENSRNOT00000002953","Pfam","IPR024253","Phosducin, thioredoxin-like domain","Coding",4.77,4.87,4.74,5.48,4.77,5.4]
["TC0300004505.rn.1",6.1,5.57,1.444,"up",0.0470345789034839,0.0477464744116654,"Plagl2","pleiomorphic adenoma gene-like 2","chr3","-","NM_001106528","coding",148709556,148722766,110,"3q41",296281,"NM_001106528","RefSeq","Rattus norvegicus pleiomorphic adenoma gene-like 2 (Plagl2), mRNA.","chr3",100,100,"NM_001106528","D3ZTE9","NM_001106528","Rn.107493","brain| colon| embryonic tissue| kidney| liver| lung| pancreas| pineal gland| pituitary gland| prostate| metamorphosing embryo| fetus| adult","NM_001106528","GO:0006366","transcription from RNA polymerase II promoter","not recorded","NM_001106528","GO:0005634","nucleus","not recorded","NM_001106528","GO:0000981","sequence-specific DNA binding RNA polymerase II transcription factor activity","not recorded",{"$nulls":3},"ENSRNOT00000068592","Pfam","IPR007087","Zinc finger, C2H2","Coding",5.87,5.95,6.49,5.6,5.59,5.51]
["TC0100001210.rn.1",4.79,5.16,-1.292,"down",0.0470491572792854,0.0477529016125309,"LOC100359523",null,"chr1","+",null,"coding",87843738,87861252,70,null,"NA",{"$nulls":4},"NA","NA",{"$nulls":24},"Coding",4.81,4.81,4.74,5.36,5.3,4.81]
["TC0900001406.rn.1",5.07,4.03,2.056,"up",0.0471345027748037,0.0478199654071437,"Sult1c2","sulfotransferase family, cytosolic, 1C, member 2a","chr9","-","NM_001013177","coding",4152589,4685399,260,"9q11",316153,"NM_001013177","RefSeq","Rattus norvegicus sulfotransferase family, cytosolic, 1C, member 2a (Sult1c2a), mRNA.","chr9",100,100,"NM_001013177","Q9WUW9","NM_001013177","Rn.205998","kidney| liver| juvenile| adult","NM_001013177","GO:0008152","metabolic process","inferred from electronic annotation","NM_001013177","GO:0005764","lysosome","inferred from electronic annotation","NM_001013177","GO:0008146","sulfotransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000061861","Pfam","IPR000863","Sulfotransferase domain","Coding",4.89,5.7,4.63,3.84,4.04,4.2]
["TC0800001588.rn.1",6.26,5.91,1.275,"up",0.0471478735590883,0.047830737113527,"LOC100911725","6-phosphofructo-2-kinase/fructose-26-bisphosphatase 4-like","chr8","+","mRNARGD7498897_1","coding",118390025,118416270,150,null,"NA","mRNARGD7498897_1","Rat Genome Database","6-phosphofructo-2-kinase/fructose-26-bisphosphatase 4-like","chr8",100,100,"ENSRNOT00000037662","F1M7B7",{"$nulls":3},"ENSRNOT00000037662","GO:0006003","fructose 2,6-bisphosphate metabolic process","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000037662","GO:0003824","catalytic activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000037662","Pfam","IPR013078","Histidine phosphatase superfamily, clade-1","Coding",6.35,6.19,6.25,5.99,6,5.74]
["TC0100005588.rn.1",6.29,7.35,-2.085,"down",0.0472116128131483,0.0478786225802557,"LOC102553172","uncharacterized LOC102553172","chr1","-","mRNARGD7651238_1","coding",118193813,118196757,40,null,"NA","mRNARGD7651238_1","Rat Genome Database","uncharacterized LOC102553172","chr1",100,100,{"$nulls":24},"Coding",6.18,6.26,6.43,7.18,7.42,7.46]
["TC0X00001537.rn.1",3.47,3.88,-1.329,"down",0.0472399856044399,0.047897449350243,"Spin2a","spindlin family, member 2A (Spin2a), mRNA","chrX","-","NM_001127657_2","coding",18340413,18342407,30,null,"NA","NM_001127657_2","RefSeq","spindlin family, member 2A (Spin2a), mRNA","chrX",100,100,"ENSRNOT00000045802","B0BN24","ENSRNOT00000045802","Rn.203523","lung| adult","ENSRNOT00000045802","GO:0007276","gamete generation","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000045802","Pfam","IPR003671","Spindlin/spermiogenesis-specific protein","Coding",3.41,3.4,3.59,3.6,4.23,3.81]
["TC0100003009.rn.1",10.84,13.82,-7.89,"down",0.0472407051677063,0.047897449350243,"Sptbn2","spectrin, beta, non-erythrocytic 2","chr1","+","NM_019167","coding",219964429,220007158,440,"1q42",29211,"NM_019167","RefSeq","Rattus norvegicus spectrin, beta, non-erythrocytic 2 (Sptbn2), mRNA.","chr1",100,100,"NM_019167","Q9QWN8","NM_019167","Rn.20389","brain| embryonic tissue| eye| liver| pineal gland| prostate| metamorphosing embryo| juvenile| adult","NM_019167","GO:0007416","synapse assembly","inferred from electronic annotation","NM_019167","GO:0005615","extracellular space","not recorded","NM_019167","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":7},"Coding",10.75,10.88,10.9,13.8,13.77,13.9]
["TC0300001634.rn.1",7.69,7.96,-1.206,"down",0.0473271809251311,0.0479706184998513,"Eid1","EP300 interacting inhibitor of differentiation 1","chr3","+","NM_001109205","coding",117938451,117940221,50,"3q36",499882,"NM_001109205","RefSeq","Rattus norvegicus EP300 interacting inhibitor of differentiation 1 (Eid1), mRNA.","chr3",100,100,"NM_001109205","B1WC74","NM_001109205","Rn.22737","adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| nerve| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001109205","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_001109205","GO:0005634","nucleus","inferred from electronic annotation","NM_001109205","GO:0003714","transcription corepressor activity","inferred from electronic annotation",{"$nulls":7},"Coding",7.77,7.85,7.45,7.93,7.9,8.04]
["TC0800000611.rn.1",10.34,11.04,-1.625,"down",0.0473693164544098,0.047999323113198,"Sik3","SIK family kinase 3","chr8","+","NM_001271216","coding",50310276,50520284,250,null,684112,"NM_001271216","RefSeq","Rattus norvegicus SIK family kinase 3 (Sik3), mRNA.","chr8",100,100,"NM_001271216","B2GV43","NM_001271216","Rn.214545","brain| connective tissue| heart| liver| pituitary gland| placenta| prostate| thymus| juvenile| adult","NM_001271216","GO:0001958","endochondral ossification","inferred from electronic annotation","NM_001271216","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001271216","GO:0000287","magnesium ion binding","inferred from electronic annotation",{"$nulls":7},"Coding",10.48,10.32,10.23,10.96,11.11,11.04]
["TC0800002100.rn.1",8.26,7.85,1.329,"up",0.0473990113986388,0.0480238102657191,"Anln","Unannotated AceView Transcript","chr8","-","dawgu.aSep08-unspliced","coding",23336439,23398211,335,null,"NA","dawgu.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr8",100,100,"ENSRNOT00000019601","D4A0V6","ENSRNOT00000019601","Rn.232898","brain| colon| fetus| adult",{"$nulls":8},"ENSRNOT00000019601","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000019601","Pfam","IPR001849","Pleckstrin homology domain","Coding",8.49,8.03,8.26,8.06,8,7.49]
["TC1500000669.rn.1",11.21,14.5,-9.781,"down",0.0474215380268145,0.0480382281935966,"Nefl","neurofilament, light polypeptide","chr15","+","NM_031783","coding",44799310,44804569,120,"15p12",83613,"NM_031783","RefSeq","Rattus norvegicus neurofilament, light polypeptide (Nefl), mRNA.","chr15",100,100,"NM_031783","P19527","NM_031783","Rn.18568","adrenal gland| brain| dorsal root ganglion| embryonic tissue| eye| metamorphosing embryo| juvenile| adult","NM_031783","GO:0000226","microtubule cytoskeleton organization","inferred from electronic annotation","NM_031783","GO:0005737","cytoplasm","not recorded","NM_031783","GO:0005198","structural molecule activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018599","Pfam","IPR001664","Intermediate filament protein","Coding",11.43,11.02,11.19,14.3,14.54,14.67]
["TC0100005129.rn.1",7.43,7.75,-1.248,"down",0.0475319692431965,0.0481360600316893,"Zfp566","ENCODES a protein that exhibits metal ion binding (inferred) AND  nucleic acid binding (inferred) AND  INVOLVED IN regulation of transcription  DNA-templated (inferred) AND  FOUND IN intracellular (inferred) AND  INTERACTS WITH 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND  dioxygen (ortholog) AND  valproic acid (ortholog)","chr1","-","mRNARGD4123563_1","coding",88407903,88413215,30,null,"NA","mRNARGD4123563_1","Rat Genome Database","ENCODES a protein that exhibits metal ion binding (inferred) AND  nucleic acid binding (inferred) AND  INVOLVED IN regulation of transcription  DNA-templated (inferred) AND  FOUND IN intracellular (inferred) AND  INTERACTS WITH 2 3 7 8-tetrachlorodibenzodioxine (ortholog) AND  dioxygen (ortholog) AND  valproic acid (ortholog)","chr1",100,100,"ENSRNOT00000074582","M0R4E4",{"$nulls":3},"ENSRNOT00000074582","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000074582","GO:0005622","intracellular","inferred from electronic annotation","ENSRNOT00000074582","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000074582","Pfam","IPR001909","Krueppel-associated box","Coding",7.13,7.53,7.63,7.88,7.75,7.63]
["TC1000000915.rn.1",9.24,9.73,-1.404,"down",0.0475514211675087,0.0481501449781867,"Trappc1","trafficking protein particle complex 1","chr10","+","NM_001039378","coding",55924948,55926732,104,"10q24",287427,"NM_001039378","RefSeq","Rattus norvegicus trafficking protein particle complex 1 (Trappc1), mRNA.","chr10",100,100,"NM_001039378","Q2KMM2","NM_001039378","Rn.2918","adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| pituitary gland| prostate| fetus| juvenile| adult","NM_001039378","GO:0006888","ER to Golgi vesicle-mediated transport","inferred from electronic annotation","NM_001039378","GO:0005783","endoplasmic reticulum","inferred from electronic annotation","ENSRNOT00000057079","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000057079","Pfam","IPR007233","Sybindin-like protein","Coding",9.44,8.83,9.44,9.95,9.79,9.44]
["TSUnmapped00000052.rn.1",7.11,7.39,-1.214,"down",0.0476083979863168,0.0481943122239592,"Alkbh6","alkB, alkylation repair homolog 6 (E. coli)",null,null,"NM_001127450","coding","NA","NA",30,"1q21",292780,"NM_001127450","RefSeq","Rattus norvegicus alkB, alkylation repair homolog 6 (E. coli) (Alkbh6), mRNA.",null,100,100,"NM_001127450","Q4KM81","NM_001127450","Rn.107346","adrenal gland| brain| connective tissue| eye| heart| kidney| lung| ovary| placenta| prostate| testis| juvenile| adult","NM_001127450","GO:0055114","oxidation-reduction process","inferred from electronic annotation",{"$nulls":4},"NM_001127450","GO:0016706","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors","inferred from electronic annotation",{"$nulls":7},"Coding",7.18,7.03,7.13,7.29,7.33,7.55]
["TC0100007742.rn.1",11.2,12.52,-2.497,"down",0.0476388786574446,0.0482149316016487,"Got1","glutamic-oxaloacetic transaminase 1, soluble","chr1","-","NM_012571","coding",263246244,263269762,214,"1q54",24401,"NM_012571","RefSeq","Rattus norvegicus glutamic-oxaloacetic transaminase 1, soluble (Got1), mRNA.","chr1",100,100,"NM_012571","P13221","NM_012571","Rn.5819","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus| metamorphosing embryo| fetus| juvenile| adult","NM_012571","GO:0006103","2-oxoglutarate metabolic process","inferred from sequence or structural similarity","NM_012571","GO:0005634","nucleus","not recorded","NM_012571","GO:0004069","L-aspartate:2-oxoglutarate aminotransferase activity","inferred from direct assay","NM_012571","GenMAPP","Glycolysis_and_Gluconeogenesis","ENSRNOT00000022309","Pfam","IPR004839","Aminotransferase, class I/classII","Coding",11.28,11.05,11.28,12.44,12.65,12.47]
["TC0700002046.rn.1",3.56,3.25,1.24,"up",0.0477253057999097,0.048281188460208,"Olr956","olfactory receptor 956","chr7","-","NM_001001381","coding",6753411,6754349,30,"7q11",302041,"NM_001001381","RefSeq","Rattus norvegicus olfactory receptor 956 (Olr956), mRNA.","chr7",100,100,"NM_001001381","D3ZPD7","NM_001001381","Rn.143376",null,"NM_001001381","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001001381","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001001381","GO:0004984","olfactory receptor activity","inferred from electronic annotation",{"$nulls":7},"Coding",3.75,3.37,3.55,3.4,3.06,3.28]
["TC1000004345.rn.1",4.82,5.09,-1.206,"down",0.0478050471144195,0.0483365234822224,"Trim16","tripartite motif-containing 16","chr10","+","NM_001135033","coding",49231961,49254653,80,"10q23",303214,"NM_001135033","RefSeq","Rattus norvegicus tripartite motif-containing 16 (Trim16), mRNA.","chr10",100,100,"NM_001135033","D3ZW47","NM_001135033","Rn.171348","colon| muscle| placenta| prostate| juvenile| adult","NM_001135033","GO:0032526","response to retinoic acid","not recorded","NM_001135033","GO:0005737","cytoplasm","inferred from electronic annotation","NM_001135033","GO:0003677","DNA binding","not recorded",{"$nulls":3},"ENSRNOT00000065335","Pfam","IPR000315","Zinc finger, B-box","Coding",4.67,4.95,4.84,4.99,5.3,4.97]
["TC2000000380.rn.1",6.04,5.76,1.214,"up",0.0478304969204534,0.0483512849797135,"Rrp1b","ribosomal RNA processing 1B","chr20","+","ENSRNOT00000001583","coding",10844254,10869831,217,"20p12",309673,"ENSRNOT00000001583","ENSEMBL","ensembl:known_by_projection chromosome:Rnor_5.0:20:13016119:13039473:1 gene:ENSRNOG00000001194 gene_biotype:protein_coding transcript_biotype:protein_coding","chr20",100,100,"ENSRNOT00000001583","D3ZY39","ENSRNOT00000001583","Rn.187161","connective tissue| adult","ENSRNOT00000001583","GO:0006364","rRNA processing","inferred from electronic annotation","ENSRNOT00000001583","GO:0000791","euchromatin","inferred from electronic annotation","ENSRNOT00000001583","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":3},"ENSRNOT00000001583","Pfam","IPR010301","Nucleolar, Nop52","Coding",6.09,5.93,6.09,5.74,5.75,5.79]
["TC0200004151.rn.1",4.43,4.12,1.24,"up",0.0478432696453431,0.0483582821487987,"Crct1","INTERACTS WITH cisplatin AND  dibutyl phthalate AND  (S)-nicotine (ortholog)","chr2","-","mRNARGD2443500_1","coding",193330094,193373009,30,null,"NA","mRNARGD2443500_1","Rat Genome Database","INTERACTS WITH cisplatin AND  dibutyl phthalate AND  (S)-nicotine (ortholog)","chr2",100,100,"ENSRNOT00000012684","D3ZGI6","ENSRNOT00000012684","Rn.24766","eye| lung| ovary| juvenile| adult",{"$nulls":8},"ENSRNOT00000012684","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",4.4,4.45,4.45,4.12,4.05,4.2]
["TC1700000551.rn.1",7.96,8.31,-1.275,"down",0.0478957019829606,0.048400013911926,"Cdkal1","CDK5 regulatory subunit associated protein 1-like 1","chr17","+","ENSRNOT00000024854","coding",36956382,37158566,70,"17p12",361243,"ENSRNOT00000024854","ENSEMBL","ensembl:known chromosome:Rnor_5.0:17:38824446:38993624:1 gene:ENSRNOG00000018381 gene_biotype:protein_coding transcript_biotype:protein_coding","chr17",100,100,"ENSRNOT00000024854","F1LV76","ENSRNOT00000024854","Rn.198339","brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| liver| prostate| testis| metamorphosing embryo| fetus| adult","ENSRNOT00000024854","GO:0008152","metabolic process","inferred from electronic annotation","ENSRNOT00000024854","GO:0005783","endoplasmic reticulum","not recorded","ENSRNOT00000024854","GO:0003824","catalytic activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024854","Pfam","IPR002792","TRAM domain","Coding",7.92,7.85,8.12,8.15,8.55,8.24]
["TC0600002009.rn.1",7.59,8.82,-2.346,"down",0.0479079772825231,0.0484096023136937,"Dpysl5","dihydropyrimidinase-related protein 5-like","chr6","-","ENSRNOT00000073884","coding",26423842,26445787,140,null,100911610,"ENSRNOT00000073884","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:36246624:36265542:-1 gene:ENSRNOG00000050641 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000073884","M0RAT9",{"$nulls":3},"ENSRNOT00000073884","GO:0006208","pyrimidine nucleobase catabolic process","inferred from electronic annotation","ENSRNOT00000073884","GO:0005737","cytoplasm","inferred from electronic annotation","ENSRNOT00000073884","GO:0016787","hydrolase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073884","Pfam","IPR006680","Amidohydrolase 1","Coding",7.39,7.57,7.82,9.09,8.73,8.64]
["TC0200000488.rn.1",6.29,4.6,3.227,"up",0.0479305758868111,0.0484251994271715,"C6","complement component 6","chr2","+","NM_176074","coding",54460409,54533795,252,"2q16",24237,"NM_176074","RefSeq","Rattus norvegicus complement component 6 (C6), mRNA.","chr2",100,100,"NM_176074","Q811M5","NM_176074","Rn.16145","adipose tissue| connective tissue| liver| lung| prostate| juvenile| adult","NM_176074","GO:0001701","in utero embryonic development","inferred from electronic annotation","NM_176074","GO:0005579","membrane attack complex","inferred from electronic annotation","NM_176074","GO:0003674","molecular_function","no biological data available","NM_176074","GenMAPP","Complement_Activation_Classical","ENSRNOT00000033112","Pfam","IPR000436","Sushi/SCR/CCP","Coding",7.08,5.91,5.89,4.68,4.52,4.61]
["TC0900002599.rn.1",11.47,12.41,-1.919,"down",0.0479310440624097,0.0484251994271715,"Ankrd12","ankyrin repeat domain-containing protein 12-like","chr9","-","ENSRNOT00000017253","coding",113813139,113872723,120,null,100910483,"ENSRNOT00000017253","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:113343870:113375196:-1 gene:ENSRNOG00000048545 gene_biotype:protein_coding transcript_biotype:protein_coding","chr9",100,100,"ENSRNOT00000017253","D3ZGR5",{"$nulls":3},"ENSRNOT00000017253","GO:0008150","biological_process","no biological data available","ENSRNOT00000017253","GO:0005575","cellular_component","no biological data available","ENSRNOT00000017253","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000017253","Pfam","IPR002110","Ankyrin repeat","Coding",11.57,11.57,11.28,12.37,12.35,12.5]
["TC0300001889.rn.1",5.77,6.16,-1.31,"down",0.0479388818309057,0.0484267455387685,"RGD1566320","RGD1566320","chr3","+","NM_001106520","coding",138764927,138766874,70,"3q41",296207,"NM_001106520","RefSeq","Rattus norvegicus RGD1566320 (RGD1566320), mRNA.","chr3",100,100,"NM_001106520","D4ABV0","NM_001106520","Rn.4025","adrenal gland| brain| dorsal root ganglion| eye| heart| kidney| lung| muscle| pancreas| placenta| prostate| adult",{"$nulls":4},"NM_001106520","GO:0005739","mitochondrion","inferred from electronic annotation",{"$nulls":11},"Coding",5.74,5.79,5.79,6.04,6.32,6.12]
["TC1000000588.rn.1",10.82,12.34,-2.868,"down",0.0479901813241908,0.0484643786116884,"Kif3a","kinesin family member 3a","chr10","+","NM_053377","coding",38918392,38952771,263,"10q22",84392,"NM_053377","RefSeq","Rattus norvegicus kinesin family member 3a (Kif3a), mRNA.","chr10",100,100,"NM_053377","F1LQZ3","NM_053377","Rn.47400","brain| dorsal root ganglion| embryonic tissue| eye| lung| placenta| prostate| testis|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_053377","GO:0001701","in utero embryonic development","inferred from electronic annotation","NM_053377","GO:0005813","centrosome","inferred from electronic annotation","NM_053377","GO:0003777","microtubule motor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000009999","Pfam","IPR001752","Kinesin, motor domain","Coding",10.89,10.89,10.68,12.27,12.37,12.39]
["TC1300001535.rn.1",4.4,3.89,1.424,"up",0.04799455141557,0.0484643786116884,"LOC102554977","INTERACTS WITH cisplatin (ortholog) AND  progesterone (ortholog)","chr13","-","mRNARGD7728605_1","coding",56830080,56851627,80,null,"NA","mRNARGD7728605_1","Rat Genome Database","INTERACTS WITH cisplatin (ortholog) AND  progesterone (ortholog)","chr13",100,100,{"$nulls":24},"Coding",4.45,4.39,4.36,3.89,3.79,4]
["TC1500001671.rn.1",4.73,4.46,1.206,"up",0.0479956654917319,0.0484643786116884,"Haus4","HAUS augmin-like complex, subunit 4","chr15","-","NM_001013995","coding",33182137,33194447,180,"15p13",305882,"NM_001013995","RefSeq","Rattus norvegicus HAUS augmin-like complex, subunit 4 (Haus4), mRNA.","chr15",100,100,"NM_001013995","Q6AYC0","NM_001013995","Rn.17621","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| liver| lung| muscle| ovary| prostate| testis| thymus| metamorphosing embryo| juvenile| adult","NM_001013995","GO:0051225","spindle assembly","inferred from electronic annotation","NM_001013995","GO:0005813","centrosome","not recorded",{"$nulls":11},"Coding",4.86,4.64,4.69,4.47,4.54,4.37]
["TC1400000718.rn.1",11.01,9.74,2.412,"up",0.0480614274284869,0.0485195011251378,"Prom1","prominin 1","chr14","+","NM_001110137","coding",71532265,71637400,330,"14q21",60357,"NM_001110137","RefSeq","Rattus norvegicus prominin 1 (Prom1), transcript variant 2, mRNA.","chr14",100,100,"NM_001110137","A0JN22","NM_001110137","Rn.144589","brain| dorsal root ganglion| embryonic tissue| eye| kidney| lung| muscle| pancreas| prostate| metamorphosing embryo| adult","NM_001110137","GO:0010842","retina layer formation","not recorded","NM_001110137","GO:0001750","photoreceptor outer segment","not recorded","NM_001110137","GO:0042805","actinin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000004231","Pfam","IPR008795","Prominin","Coding",10.98,10.92,11.13,9.54,9.84,9.84]
["TC1000001227.rn.1",5.63,4.48,2.219,"up",0.0480813102322684,0.0485367526757749,"Ccl7","chemokine (C-C motif) ligand 7","chr10","+","NM_001007612","coding",69423081,69424935,30,"10q26",287561,"NM_001007612","RefSeq","Rattus norvegicus chemokine (C-C motif) ligand 7 (Ccl7), mRNA.","chr10",100,100,"NM_001007612","Q9QXY8","NM_001007612","Rn.26815","connective tissue| eye| heart| vibrissa| adult","NM_001007612","GO:0006954","inflammatory response","inferred from electronic annotation","NM_001007612","GO:0005615","extracellular space","inferred from electronic annotation","NM_001007612","GO:0008009","chemokine activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000256","Pfam","IPR001811","Chemokine interleukin-8-like domain","Coding",5.33,5.98,5.57,4.6,4.47,4.38]
["TC0300003518.rn.1",3.75,3.35,1.32,"up",0.0481690430306142,0.0486027211015799,"Olr550","olfactory receptor 550","chr3","-","NM_001000322","coding",74990230,74991168,30,"3q24",295795,"NM_001000322","RefSeq","Rattus norvegicus olfactory receptor 550 (Olr550), mRNA.","chr3",100,100,"NM_001000322","D3Z7Y3","NM_001000322","Rn.142912",null,"NM_001000322","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001000322","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001000322","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000049273","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",3.79,3.96,3.51,3.48,3.45,3.11]
["TC0300003519.rn.1",3.75,3.35,1.32,"up",0.0481690430306142,0.0486027211015799,"Olr550","olfactory receptor 550 (Olr550), mRNA","chr3","-","NM_001000322_2","coding",74997158,74998096,30,null,"NA","NM_001000322_2","RefSeq","olfactory receptor 550 (Olr550), mRNA","chr3",100,100,"ENSRNOT00000051768","D3Z7Y3","ENSRNOT00000051768","Rn.142912",null,"ENSRNOT00000051768","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","ENSRNOT00000051768","GO:0005886","plasma membrane","inferred from electronic annotation","ENSRNOT00000051768","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000051768","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",3.79,3.96,3.51,3.48,3.45,3.11]
["TC1300001036.rn.1",9.06,9.42,-1.283,"down",0.0482034075489524,0.0486232734761542,"Angel2","angel homolog 2 (Drosophila)","chr13","+","NM_001135119","coding",109505686,109520976,160,"13q27",305035,"NM_001135119","RefSeq","Rattus norvegicus angel homolog 2 (Drosophila) (Angel2), mRNA.","chr13",100,100,"NM_001135119","F1LT13","NM_001135119","Rn.228971","brain| connective tissue| liver| lung| muscle| ovary| pancreas| placenta| spleen| testis| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":15},"ENSRNOT00000005084","Pfam","IPR005135","Endonuclease/exonuclease/phosphatase","Coding",9.05,8.83,9.3,9.36,9.55,9.35]
["TC0100004075.rn.1",9.18,11.6,-5.352,"down",0.0482378475991129,0.048646714115773,"Arfgef3","similar to mKIAA1244 protein","chr1","-","ENSRNOT00000015927","coding",13838164,13915598,300,"1p12",292947,"ENSRNOT00000015927","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:13988001:14063960:-1 gene:ENSRNOG00000011460 gene_biotype:protein_coding transcript_biotype:protein_coding","chr1",100,100,"ENSRNOT00000015927","D3ZF86",{"$nulls":3},"ENSRNOT00000015927","GO:0010923","negative regulation of phosphatase activity","inferred from electronic annotation","ENSRNOT00000015927","GO:0005802","trans-Golgi network","not recorded","ENSRNOT00000015927","GO:0005086","ARF guanyl-nucleotide exchange factor activity","not recorded",{"$nulls":3},"ENSRNOT00000015927","Pfam","IPR015403","Domain of unknown function DUF1981, Sec7 associated","Coding",9.26,8.99,9.29,11.45,11.75,11.6]
["TC0700003400.rn.1",5.27,4.97,1.231,"up",0.0482705693917685,0.0486684114518783,"Fbxl6","F-box and leucine-rich repeat protein 6","chr7","-","NM_001005563","coding",117602044,117604968,142,"7q34",362941,"NM_001005563","RefSeq","Rattus norvegicus F-box and leucine-rich repeat protein 6 (Fbxl6), mRNA.","chr7",100,100,"NM_001005563","Q641W5","NM_001005563","Rn.20810","brain| connective tissue| heart| kidney| lung| ovary| pancreas| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| adult",{"$nulls":8},"ENSRNOT00000035199","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000035199","Pfam","IPR001810","F-box domain","Coding",5.22,5.3,5.28,5.07,4.92,4.91]
["TC0X00001694.rn.1",8.26,8.55,-1.223,"down",0.0483176223474751,0.0487101977713418,null,null,"chrX","-",null,"coding",38252188,38274398,93,null,"NA","ENSRNOT00000075139","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:38561112:38583322:-1 gene:ENSRNOG00000046564 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000075139","M0RA25",{"$nulls":22},"Coding",8.11,8.33,8.33,8.33,8.56,8.75]
["TC1300000859.rn.1",10.25,11.43,-2.266,"down",0.048322771304464,0.0487125615326047,"Zfp238","zinc finger protein 238","chr13","+","NM_022678","coding",95585627,95593316,140,"13q25",64619,"NM_022678","RefSeq","Rattus norvegicus zinc finger protein 238 (Zfp238), mRNA.","chr13",100,100,"NM_022678","Q9JKY3","NM_022678","Rn.207206","brain| pancreas| metamorphosing embryo| juvenile","NM_022678","GO:0000122","negative regulation of transcription from RNA polymerase II promoter","inferred from electronic annotation","NM_022678","GO:0005634","nucleus","inferred from electronic annotation","NM_022678","GO:0043565","sequence-specific DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000005849","Pfam","IPR013069","BTB/POZ","Coding",10.17,10.28,10.29,11.28,11.58,11.42]
["TC0300003206.rn.1",8.44,9.54,-2.144,"down",0.0483399308831025,0.0487270318209466,"Grb14","growth factor receptor bound protein 14","chr3","-","NM_031623","coding",50937403,51054447,150,"3q21",58844,"NM_031623","RefSeq","Rattus norvegicus growth factor receptor bound protein 14 (Grb14), mRNA.","chr3",100,100,"NM_031623","O88900","NM_031623","Rn.30028","brain| connective tissue| eye| heart| liver| lung| ovary| pancreas| prostate| juvenile| adult","NM_031623","GO:0007165","signal transduction","inferred from electronic annotation","NM_031623","GO:0000139","Golgi membrane","inferred from electronic annotation","NM_031623","GO:0005070","SH3/SH2 adaptor activity","inferred from electronic annotation",{"$nulls":7},"Coding",8.57,8.08,8.68,9.52,9.63,9.46]
["TC0300000610.rn.1",9.25,12.42,-9,"down",0.0483843453672365,0.0487633130293725,"Kcnj3","potassium inwardly-rectifying channel, subfamily J, member 3","chr3","+","NM_031610","coding",41019778,41182467,60,"3q31-q35",50599,"NM_031610","RefSeq","Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 3 (Kcnj3), mRNA.","chr3",100,100,"NM_031610","P63251","NM_031610","Rn.9809","brain| heart| pancreas|tailbud embryo| adult","NM_031610","GO:0034765","regulation of ion transmembrane transport","inferred from electronic annotation","NM_031610","GO:0009897","external side of plasma membrane","inferred from direct assay","NM_031610","GO:0005242","inward rectifier potassium channel activity","not recorded","NM_031610","GenMAPP","G_Protein_Signaling","ENSRNOT00000007335","Pfam","IPR016449","Potassium channel, inwardly rectifying, Kir","Coding",9.28,9.13,9.35,12.3,12.51,12.45]
["TC1200000120.rn.1",13.39,13.7,-1.24,"down",0.048392128290479,0.0487683274661432,"fleelar","Unannotated AceView Transcript","chr12","+","fleelar.aSep08-unspliced","coding",7090927,7092770,30,null,"NA","fleelar.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr12",100,100,{"$nulls":24},"Coding",13.32,13.44,13.42,13.88,13.75,13.47]
["TC0500001352.rn.1",4,4.31,-1.24,"down",0.0484634069280165,0.0488259970854063,"Zmynd12","zinc finger, MYND-type containing 12","chr5","+","NM_001107970","coding",138470142,138505918,176,"5q36",313552,"NM_001107970","RefSeq","Rattus norvegicus zinc finger, MYND-type containing 12 (Zmynd12), mRNA.","chr5",100,100,"NM_001107970","D4A6S7","NM_001107970","Rn.60862","brain| adult",{"$nulls":4},"NM_001107970","GO:0005622","intracellular","inferred from electronic annotation",{"$nulls":11},"Coding",4.07,4.07,3.87,4.13,4.25,4.56]
["TC0100005947.rn.1",6.72,7.1,-1.301,"down",0.0484855322864308,0.0488426224395494,"Mesdc1","mesoderm development candidate 1","chr1","-","NM_001013149","coding",146027821,146029840,30,"1q31",308795,"NM_001013149","RefSeq","Rattus norvegicus mesoderm development candidate 1 (Mesdc1), mRNA.","chr1",100,100,"NM_001013149","Q5BJV3","NM_001013149","Rn.162446","adipose tissue| brain| colon| connective tissue| embryonic tissue| lung| ovary| prostate|tailbud embryo| fetus| juvenile| adult",{"$nulls":8},"ENSRNOT00000016455","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":7},"Coding",6.51,6.78,6.88,7.14,7.28,6.89]
["TC0X00001637.rn.1",6.57,5.91,1.58,"up",0.0484894581303931,0.0488437446902324,"Ace2","angiotensin I converting enzyme 2","chrX","-","NM_001012006","coding",32049930,32095867,200,"Xq21",302668,"NM_001012006","RefSeq","Rattus norvegicus angiotensin I converting enzyme 2 (Ace2), mRNA.","chrX",100,100,"NM_001012006","Q5EGZ1","NM_001012006","Rn.230337","colon| prostate| small intestine| fetus| adult","NM_001012006","GO:0003051","angiotensin-mediated drinking behavior","inferred from electronic annotation","NM_001012006","GO:0005576","extracellular region","not recorded","NM_001012006","GO:0001618","virus receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000049947","Pfam","IPR001548","Peptidase M2, peptidyl-dipeptidase A","Coding",6.5,6.58,6.62,5.9,6,5.83]
["TC1500000956.rn.1",12.76,11.94,1.765,"up",0.0486181102204433,0.0489449546589001,null,null,"chr15","+",null,"coding",75031576,75044066,30,null,"NA","ENSRNOT00000045865","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:78592268:78604758:1 gene:ENSRNOG00000049650 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000045865","F7F9J5",{"$nulls":18},"ENSRNOT00000045865","Pfam","IPR004244","Transposase, L1","Coding",12.52,13.6,12.15,12.05,11.65,12.12]
["TC1900001249.rn.1",6.95,6.07,1.84,"up",0.0486660350111984,0.0489818468149677,"LOC685199","similar to RIKEN cDNA 5031410I06","chr19","-","mRNARGD7496028_1","coding",28291406,28296645,50,null,"NA","mRNARGD7496028_1","Rat Genome Database","similar to RIKEN cDNA 5031410I06","chr19",100,100,{"$nulls":24},"Coding",6.79,7.59,6.47,5.94,6.16,6.1]
["TC0300003582.rn.1",4.48,4.15,1.257,"up",0.0486705645607462,0.0489835676120928,"Olr665","olfactory receptor 665","chr3","-","NM_001000634","coding",77605027,77605962,30,"3q24",404827,"NM_001000634","RefSeq","Rattus norvegicus olfactory receptor 665 (Olr665), mRNA.","chr3",100,100,"NM_001000634","M0R6P6","NM_001000634","Rn.142836",null,"NM_001000634","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001000634","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001000634","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000073332","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",4.48,4.63,4.32,4.31,4.24,3.89]
["TC0200000648.rn.1",9.49,12.15,-6.32,"down",0.0486758138641457,0.0489860125504939,"Cdh18","cadherin 18, type 2","chr2","+","ENSRNOT00000014013","coding",74360702,74693342,160,"2q22",310174,"ENSRNOT00000014013","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:94093007:94418627:1 gene:ENSRNOG00000010535 gene_biotype:protein_coding transcript_biotype:protein_coding","chr2",100,100,"ENSRNOT00000014013","F1M702",{"$nulls":3},"ENSRNOT00000014013","GO:0007156","homophilic cell adhesion","inferred from electronic annotation","ENSRNOT00000014013","GO:0005886","plasma membrane","inferred from electronic annotation","ENSRNOT00000014013","GO:0005509","calcium ion binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000014013","Pfam","IPR000233","Cadherin, cytoplasmic domain","Coding",9.53,9.53,9.41,12.02,12.25,12.17]
["TC1000003456.rn.1",5.46,4.78,1.602,"up",0.0487070648147208,0.0490117837511739,null,null,"chr10","-",null,"coding",72541774,72542129,30,null,"NA","ENSRNOT00000071194","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:72446988:72447343:-1 gene:ENSRNOG00000046814 gene_biotype:protein_coding transcript_biotype:protein_coding","chr10",100,100,"ENSRNOT00000071194","M0R7B9",{"$nulls":3},"ENSRNOT00000071194","GO:0006355","regulation of transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000071194","GO:0005634","nucleus","inferred from electronic annotation","ENSRNOT00000071194","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000071194","Pfam","IPR001356","Homeobox domain","Coding",5.26,5.22,5.91,4.74,4.51,5.09]
["TC1800000135.rn.1",9.75,8.55,2.297,"up",0.0487131154901641,0.0490150329691636,null,null,"chr18","+",null,"coding",15293625,15300438,25,null,"NA","ENSRNOT00000048906","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:15072638:15079451:1 gene:ENSRNOG00000029344 gene_biotype:protein_coding transcript_biotype:protein_coding","chr18",100,100,"ENSRNOT00000048906","F1LVD9",{"$nulls":22},"Coding",9.48,10.69,9.08,8.54,7.98,9.13]
["TC1000003600.rn.1",3.8,3.52,1.214,"up",0.0487206770632434,0.0490198019846858,"Gm11541","predicted gene 11541","chr10","-","NM_001007584","coding",82417051,82426557,30,"11 D|11",432589,"NM_001007584","RefSeq","Mus musculus predicted gene 11541 (Gm11541), mRNA.","chr10",100,100,"NM_001007584","Q8C4D8","NM_001007584","Mm.342314","brain","NM_001007584","GO:0008150","biological_process","no biological data available","NM_001007584","GO:0005575","cellular_component","no biological data available","NM_001007584","GO:0003674","molecular_function","no biological data available",{"$nulls":7},"Coding",3.78,4.04,3.58,3.57,3.4,3.6]
["TC0600003093.rn.1",5.14,4.71,1.347,"up",0.0487392400511365,0.0490356387656836,"Syne3","spectrin repeat containing, nuclear envelope family member 3","chr6","-","NM_001106762","coding",128639036,128716061,230,"6q32",299356,"NM_001106762","RefSeq","Rattus norvegicus spectrin repeat containing, nuclear envelope family member 3 (Syne3), mRNA.","chr6",100,100,"ENSRNOT00000035826","D3ZD24","NM_001106762","Rn.199826","adipose tissue| lung| adult","NM_001106762","GO:0007010","cytoskeleton organization","not recorded","NM_001106762","GO:0005635","nuclear envelope","not recorded","NM_001106762","GO:0003779","actin binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000035826","Pfam","IPR012315","KASH domain","Coding",5.27,5.07,5.07,4.63,4.73,4.76]
["TC1400000585.rn.1",9.06,8.64,1.338,"up",0.048752952459185,0.0490465939172122,"LOC301861","similar to ARP2 actin-related protein 2 homolog (yeast)","chr14","+","ENSRNOT00000020237","coding",49507417,49509593,50,"14q11",301861,"ENSRNOT00000020237","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:49676453:49678629:1 gene:ENSRNOG00000015015 gene_biotype:protein_coding transcript_biotype:protein_coding","chr14",100,100,"ENSRNOT00000020237","D3ZEF5",{"$nulls":3},"ENSRNOT00000020237","GO:0034314","Arp2/3 complex-mediated actin nucleation","inferred from electronic annotation","ENSRNOT00000020237","GO:0005885","Arp2/3 protein complex","inferred from electronic annotation","ENSRNOT00000020237","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000020237","Pfam","IPR004000","Actin-related protein","Coding",8.96,9.25,8.96,8.82,8.62,8.47]
["TC0100001560.rn.1",5.06,4.27,1.729,"up",0.0487709747085696,0.049059042310647,"Slc6a5","solute carrier family 6 (neurotransmitter transporter), member 5","chr1","+","NM_203334","coding",105284753,105336369,201,"1q22",171148,"NM_203334","RefSeq","Rattus norvegicus solute carrier family 6 (neurotransmitter transporter), member 5 (Slc6a5), mRNA.","chr1",100,100,"NM_203334","P58295","NM_203334","Rn.34566","placenta| adult","NM_203334","GO:0006836","neurotransmitter transport","inferred from electronic annotation","NM_203334","GO:0005886","plasma membrane","not recorded","NM_203334","GO:0005328","neurotransmitter:sodium symporter activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000041950","Pfam","IPR000175","Sodium:neurotransmitter symporter","Coding",4.86,5.57,4.76,4.38,4.18,4.25]
["TC1400000731.rn.1",10.22,9.13,2.129,"up",0.0487811746369311,0.0490664611822889,null,null,"chr14","+",null,"coding",72667364,72680027,24,null,"NA","ENSRNOT00000073695","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:72686452:72699115:1 gene:ENSRNOG00000049707 gene_biotype:protein_coding transcript_biotype:protein_coding","chr14",100,100,"ENSRNOT00000073695","M0R3T7",{"$nulls":22},"Coding",9.68,11.22,9.75,9,8.92,9.46]
["TC0100004529.rn.1",5.61,4.04,2.969,"up",0.0490173071224459,0.0492566020258688,"LOC102551311","afadin-like","chr1","-","mRNARGD7695091_1","coding",54149225,54179227,131,null,"NA","mRNARGD7695091_1","Rat Genome Database","afadin-like","chr1",100,100,{"$nulls":24},"Coding",4.89,6.75,5.19,3.97,3.99,4.16]
["TC1300000944.rn.1",8.91,11.05,-4.408,"down",0.0490712659833688,0.0493011545053267,"Susd4","sushi domain containing 4","chr13","+","NM_001105982","coding",101181679,101307912,129,"13q26",289335,"NM_001105982","RefSeq","Rattus norvegicus sushi domain containing 4 (Susd4), mRNA.","chr13",100,100,"NM_001105982","D4A231","NM_001105982","Rn.19527","brain| dorsal root ganglion| embryonic tissue| eye| heart| placenta| prostate| spleen| metamorphosing embryo| juvenile| adult",{"$nulls":15},"ENSRNOT00000052407","Pfam","IPR000436","Sushi/SCR/CCP","Coding",8.93,8.86,8.95,10.92,11.13,11.09]
["TC1300000643.rn.1",13.58,15.26,-3.204,"down",0.0490788852090998,0.0493031063478645,"Kifap3","kinesin-associated protein 3","chr13","+","NM_001105964","coding",82072497,82217252,267,"13q22",289168,"NM_001105964","RefSeq","Rattus norvegicus kinesin-associated protein 3 (Kifap3), mRNA.","chr13",100,100,"ENSRNOT00000063810","D3ZWA5","NM_001105964","Rn.163223","brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001105964","GO:0007017","microtubule-based process","inferred from electronic annotation","NM_001105964","GO:0000794","condensed nuclear chromosome","inferred from electronic annotation","NM_001105964","GO:0019894","kinesin binding","inferred from electronic annotation",{"$nulls":7},"Coding",13.67,13.67,13.4,15.09,15.38,15.31]
["TC1900001358.rn.1",4.49,4.16,1.257,"up",0.0490920012972557,0.049313430551936,"Cenpt","centromere protein T","chr19","-","NM_001024257","coding",37813284,37819783,185,"19q12",307805,"NM_001024257","RefSeq","Rattus norvegicus centromere protein T (Cenpt), mRNA.","chr19",100,100,"NM_001024257","Q561R1","NM_001024257","Rn.194991","brain| connective tissue| embryonic tissue| heart| liver| ovary| placenta| testis| thymus| metamorphosing embryo| juvenile| adult","NM_001024257","GO:0000278","mitotic cell cycle","not recorded","NM_001024257","GO:0000775","chromosome, centromeric region","not recorded","NM_001024257","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000036702","Pfam","IPR003958","Transcription factor CBF/NF-Y/archaeal histone","Coding",4.5,4.49,4.49,4.26,4.06,4.16]
["TC0X00000403.rn.1",4.62,4.27,1.275,"up",0.0491018167790115,0.0493175865434061,null,null,"chrX","+",null,"coding",43029272,43029829,30,null,"NA","ENSRNOT00000072717","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:43334061:43334618:1 gene:ENSRNOG00000050250 gene_biotype:protein_coding transcript_biotype:protein_coding","chrX",100,100,"ENSRNOT00000072717","M0R7U5",{"$nulls":22},"Coding",4.65,4.72,4.49,4.32,4,4.49]
["TC1800000308.rn.1",9.67,9.36,1.24,"up",0.0491921082222235,0.0493911399299604,"Eif4ebp3","eukaryotic translation initiation factor 4E binding protein 3","chr18","+","NM_001202552","coding",29386719,29492808,554,null,100365872,"NM_001202552","RefSeq","Rattus norvegicus eukaryotic translation initiation factor 4E binding protein 3 (Eif4ebp3), mRNA.","chr18",100,100,"NM_001202552","E9PTK9","NM_001202552","Rn.11853","adipose tissue| adrenal gland| brain| colon| connective tissue| embryonic tissue| eye| kidney| liver| lung| ovary| pancreas| prostate| testis|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","NM_001202552","GO:0045947","negative regulation of translational initiation","inferred from electronic annotation",{"$nulls":4},"NM_001202552","GO:0008190","eukaryotic initiation factor 4E binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000024825","Pfam","IPR002110","Ankyrin repeat","Coding",9.62,9.62,9.78,9.3,9.36,9.41]
["TC0X00000730.rn.1",4.14,3.59,1.464,"up",0.0492882863982614,0.0494619770666782,"RGD1560455","similar to RIKEN cDNA A630033H20 gene","chrX","+","NM_001106939","coding",78258689,78284180,52,"Xq31",302377,"NM_001106939","RefSeq","Rattus norvegicus similar to RIKEN cDNA A630033H20 gene (RGD1560455), mRNA.","chrX",100,100,"NM_001106939","D3ZQF7","NM_001106939","Rn.218680",null,"NM_001106939","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001106939","GO:0016021","integral component of membrane","inferred from electronic annotation","NM_001106939","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000049779","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",4.02,4.38,4.01,3.53,3.64,3.6]
["TC1400000922.rn.1",7.24,8.93,-3.227,"down",0.0493040050011676,0.0494748928932634,"Rasl10a","RAS-like, family 10, member A","chr14","+","NM_001108862","coding",85311833,85313211,30,"14q21",364190,"NM_001108862","RefSeq","Rattus norvegicus RAS-like, family 10, member A (Rasl10a), mRNA.","chr14",100,100,"NM_001108862","D3ZA36","NM_001108862","Rn.50230","adrenal gland| brain| heart| prostate| adult","NM_001108862","GO:0006184","GTP catabolic process","inferred from electronic annotation","NM_001108862","GO:0005622","intracellular","inferred from electronic annotation","NM_001108862","GO:0005525","GTP binding","inferred from electronic annotation",{"$nulls":7},"Coding",7.48,7.33,6.9,8.69,9.28,8.81]
["TC0700002421.rn.1",6.79,7.33,-1.454,"down",0.0493206532185781,0.0494858815375683,null,null,"chr7","-",null,"coding",28647094,28647710,30,null,"NA","ENSRNOT00000074746","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:28756881:28757497:-1 gene:ENSRNOG00000046885 gene_biotype:protein_coding transcript_biotype:protein_coding","chr7",100,100,"ENSRNOT00000074746","M0RDL6",{"$nulls":11},"ENSRNOT00000074746","GO:0019904","protein domain specific binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000074746","Pfam","IPR023410","14-3-3 domain","Coding",6.99,6.98,6.4,6.99,7.7,7.29]
["TC0100008032.rn.1",5.61,5.27,1.266,"up",0.0493437084223071,0.0495061544994742,"Pak4","p21 protein (Cdc42/Rac)-activated kinase 4","chr1","+","NM_001106238","coding",85162416,85201746,144,"1q21",292756,"NM_001106238","RefSeq","Rattus norvegicus p21 protein (Cdc42/Rac)-activated kinase 4 (Pak4), mRNA.","chr1",100,100,"NM_001106238","B5DF62","NM_001106238","Rn.18543","brain| connective tissue| eye| pancreas| pituitary gland| placenta| testis| thymus| juvenile| adult","NM_001106238","GO:0000278","mitotic cell cycle","not recorded","NM_001106238","GO:0005737","cytoplasm","not recorded","NM_001106238","GO:0004702","receptor signaling protein serine/threonine kinase activity","not recorded",{"$nulls":3},"ENSRNOT00000026966","Pfam","IPR000095","CRIB domain","Coding",5.56,5.71,5.56,5.14,5.43,5.24]
["TC1500001939.rn.1",10.91,12.21,-2.462,"down",0.0493720097783191,0.0495259676537034,"Fzd3","frizzled class receptor 3","chr15","-","NM_153474","coding",48601259,48670257,70,null,266715,"NM_153474","RefSeq","Rattus norvegicus frizzled class receptor 3 (Fzd3), mRNA.","chr15",100,100,"NM_153474","M0RCN5","NM_153474","Rn.178695","brain| pancreas| adult","NM_153474","GO:0001736","establishment of planar polarity","not recorded","NM_153474","GO:0005737","cytoplasm","not recorded","NM_153474","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation","NM_153474","GenMAPP","Wnt_Signaling","ENSRNOT00000071464","Pfam","IPR000539","Frizzled protein","Coding",10.81,11,10.92,12.26,12.13,12.23]
["TC0500002773.rn.1",3.52,3.84,-1.248,"down",0.0493816808386833,0.0495317910401889,"RGD1562165","INVOLVED IN autophagy (inferred) AND  INTERACTS WITH thioacetamide AND  17alpha-ethynylestradiol (ortholog) AND  2 3 7 8-tetrachlorodibenzodioxine (ortholog)","chr5","-","mRNARGD2456112_1","coding",71999920,72003304,30,null,"NA","mRNARGD2456112_1","Rat Genome Database","INVOLVED IN autophagy (inferred) AND  INTERACTS WITH thioacetamide AND  17alpha-ethynylestradiol (ortholog) AND  2 3 7 8-tetrachlorodibenzodioxine (ortholog)","chr5",100,100,"ENSRNOT00000029187","F1M1J6",{"$nulls":3},"ENSRNOT00000029187","GO:0006914","autophagy","inferred from electronic annotation",{"$nulls":11},"ENSRNOT00000029187","Pfam","IPR004241","Autophagy protein Atg8 ubiquitin like","Coding",3.5,3.41,3.66,3.88,3.96,3.67]
["TC1300000977.rn.1",9.58,9.98,-1.32,"down",0.0493835178760596,0.0495317910401889,"Bpnt1",null,"chr13","+",null,"coding",103265108,103292848,169,null,"NA",{"$nulls":4},"NA","NA",{"$nulls":24},"Coding",9.65,9.59,9.5,10.04,9.99,9.91]
["TC0300004301.rn.1",7.9,7.45,1.366,"up",0.0494167470277557,0.0495593968373156,"Kif16b","kinesin family member 16B","chr3","-","NM_001107783","coding",136657567,136936751,371,"3q41",311478,"NM_001107783","RefSeq","Rattus norvegicus kinesin family member 16B (Kif16b), mRNA.","chr3",100,100,"NM_001107783","D3ZFN9","NM_001107783","Rn.7029","brain| colon| heart| liver| lung| ovary| pituitary gland| placenta| prostate| fetus| juvenile| adult","NM_001107783","GO:0001704","formation of primary germ layer","inferred from electronic annotation","NM_001107783","GO:0005622","intracellular","not recorded","NM_001107783","GO:0005524","ATP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000036273","Pfam","IPR000253","Forkhead-associated (FHA) domain","Coding",7.99,7.88,7.84,7.35,7.39,7.61]
["TC0500001062.rn.1",5.74,6.39,-1.569,"down",0.0494563597967359,0.0495933975656122,"LOC100910018","ribonucleoprotein PTB-binding 2-like","chr5","+","mRNARGD7563034_1","coding",119867632,119872722,30,null,"NA","mRNARGD7563034_1","Rat Genome Database","ribonucleoprotein PTB-binding 2-like","chr5",100,100,{"$nulls":24},"Coding",5.81,5.76,5.64,6.7,6.48,5.98]
["TC0100007738.rn.1",8.91,9.32,-1.329,"down",0.0494804611561087,0.0496089744166434,"LOC100911779","ENCODES a protein that exhibits cytochrome-c oxidase activity (ortholog) AND  INVOLVED IN heme a biosynthetic process (ortholog) AND  hydrogen ion transmembrane transport (ortholog) AND  respiratory chain complex IV assembly (ortholog) AND  ASSOCIATED WITH Leigh Disease (ortholog) AND  FOUND IN mitochondrial inner membrane (ortholog) AND  mitochondrion (ortholog) AND  INTERACTS WITH 2 6-dinitrotoluene AND  thioacetamide AND  toluene","chr1","-","mRNARGD6491001_1","coding",263006340,263013876,50,null,"NA","mRNARGD6491001_1","Rat Genome Database","ENCODES a protein that exhibits cytochrome-c oxidase activity (ortholog) AND  INVOLVED IN heme a biosynthetic process (ortholog) AND  hydrogen ion transmembrane transport (ortholog) AND  respiratory chain complex IV assembly (ortholog) AND  ASSOCIATED WITH Leigh Disease (ortholog) AND  FOUND IN mitochondrial inner membrane (ortholog) AND  mitochondrion (ortholog) AND  INTERACTS WITH 2 6-dinitrotoluene AND  thioacetamide AND  toluene","chr1",100,100,{"$nulls":24},"Coding",9.13,8.56,9.05,9.18,9.59,9.18]
["TC0300001470.rn.1",6.88,5.15,3.317,"up",0.0494942861895382,0.0496142446418413,"Thbs1","thrombospondin 1","chr3","+","NM_001013062","coding",109862120,109873466,210,null,445442,"NM_001013062","RefSeq","Rattus norvegicus thrombospondin 1 (Thbs1), mRNA.","chr3",100,100,"NM_001013062","M0R979","NM_001013062","Rn.185771","adipose tissue| brain| dorsal root ganglion| heart| kidney| lung| placenta| prostate| spleen| vibrissa|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_001013062","GO:0000187","activation of MAPK activity","inferred from electronic annotation","NM_001013062","GO:0005577","fibrinogen complex","inferred from electronic annotation","NM_001013062","GO:0001786","phosphatidylserine binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000070912","Pfam","IPR000884","Thrombospondin, type 1 repeat","Coding",6.93,7.31,6.41,5.22,5.11,5.12]
["TC1300000281.rn.1",11.87,13.46,-3.01,"down",0.049522516259592,0.0496396785888847,"Atp2b4","ATPase, Ca++ transporting, plasma membrane 4","chr13","+","NM_001005871","coding",50103022,50153500,280,"13q13",29600,"NM_001005871","RefSeq","Rattus norvegicus ATPase, Ca++ transporting, plasma membrane 4 (Atp2b4), mRNA.","chr13",100,100,"NM_001005871","Q64542","NM_001005871","Rn.9986","brain| colon| liver| pituitary gland| prostate| fetus| adult","NM_001005871","GO:0003407","neural retina development","inferred from expression pattern","NM_001005871","GO:0005886","plasma membrane","not recorded","NM_001005871","GO:0005388","calcium-transporting ATPase activity","inferred by curator",{"$nulls":3},"ENSRNOT00000004078","Pfam","IPR004014","Cation-transporting P-type ATPase, N-terminal","Coding",11.74,11.86,12.02,13.6,13.46,13.31]
["TC1900000305.rn.1",5.56,5.15,1.329,"up",0.0495452242315717,0.0496595747577539,"Ddx39a","DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A","chr19","+","NM_053563","coding",24846002,24854892,316,"19q11",89827,"NM_053563","RefSeq","Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), mRNA.","chr19",100,100,"NM_053563","Q5U216","NM_053563","Rn.161716","adipose tissue| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pancreas| placenta| prostate| spleen| testis|tailbud embryo| metamorphosing embryo| juvenile| adult","NM_053563","GO:0000398","mRNA splicing, via spliceosome","inferred from electronic annotation","NM_053563","GO:0005634","nucleus","inferred from electronic annotation","NM_053563","GO:0003676","nucleic acid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000045974","Pfam","IPR001650","Helicase, C-terminal","Coding",5.52,5.52,5.64,5.16,5.16,5.14]
["TC0200002668.rn.1",9.25,9.58,-1.257,"down",0.0495595652175904,0.0496699858006332,"F2r","coagulation factor II (thrombin) receptor","chr2","-","NM_012950","coding",26118753,26135340,30,"2q12",25439,"NM_012950","RefSeq","Rattus norvegicus coagulation factor II (thrombin) receptor (F2r), mRNA.","chr2",100,100,"NM_012950","P26824","NM_012950","Rn.2609","colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| lung| ovary| pituitary gland| placenta| prostate| spleen| vibrissa|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_012950","GO:0005886","plasma membrane","inferred from direct assay","NM_012950","GO:0001965","G-protein alpha-subunit binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000074626","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",9.33,9.04,9.37,9.55,9.83,9.35]
["TC0800001215.rn.1",9.8,9.23,1.485,"up",0.0495641064508473,0.0496699858006332,"Sh3bgrl2","SH3 domain binding glutamate-rich protein like 2","chr8","+","NM_001137647","coding",91069895,91162537,120,"8q31",501026,"NM_001137647","RefSeq","Rattus norvegicus SH3 domain binding glutamate-rich protein like 2 (Sh3bgrl2), mRNA.","chr8",100,100,"NM_001137647","D4ADA8","NM_001137647","Rn.7595","brain| colon| dorsal root ganglion| kidney| lung| placenta| prostate| spleen| metamorphosing embryo| fetus| juvenile| adult",{"$nulls":4},"NM_001137647","GO:0005634","nucleus","not recorded",{"$nulls":11},"Coding",9.77,9.78,9.84,9.07,9.39,9.22]
["TC1500002491.rn.1",11.62,11.97,-1.275,"down",0.0495670487510205,0.0496699858006332,"LOC100910161","probable E3 ubiquitin-protein ligase MYCBP2-like","chr15","-","mRNARGD6499710_1","coding",87454144,87517644,246,null,"NA","mRNARGD6499710_1","Rat Genome Database","probable E3 ubiquitin-protein ligase MYCBP2-like","chr15",100,100,{"$nulls":24},"Coding",11.53,11.69,11.65,11.81,11.88,12.23]
["TC2000000930.rn.1",4.16,3.84,1.248,"up",0.0495900154449452,0.0496875715899847,"Olr1671","olfactory receptor 1671","chr20","-","NM_001000266","coding",398886,399969,27,"20p12",294138,"NM_001000266","RefSeq","Rattus norvegicus olfactory receptor 1671 (Olr1671), mRNA.","chr20",100,100,"NM_001000266","F1M7K2","NM_001000266","Rn.142700",null,"NM_001000266","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001000266","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001000266","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000000953","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",4.16,4.39,3.93,3.94,3.78,3.81]
["TC0600002358.rn.1",10.52,10,1.434,"up",0.0496552059074465,0.0497353734543189,"RGD1560073","similar to ribosomal protein S10","chr6","-","ENSRNOT00000042029","coding",59531018,59531602,24,"6q21",314054,"ENSRNOT00000042029","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:69123987:69124571:-1 gene:ENSRNOG00000034175 gene_biotype:protein_coding transcript_biotype:protein_coding","chr6",100,100,"ENSRNOT00000042029","D3ZCN9",{"$nulls":18},"ENSRNOT00000042029","Pfam","IPR005326","Plectin/S10, N-terminal","Coding",10.57,10.49,10.49,10.14,10.35,9.51]
["TC0500002183.rn.1",5.48,5.83,-1.275,"down",0.0496601820952658,0.049737489804939,"Mcmdc2","minichromosome maintenance domain containing 2","chr5","-","NM_001024340","coding",8973869,9038594,228,"5q11",500392,"NM_001024340","RefSeq","Rattus norvegicus minichromosome maintenance domain containing 2 (Mcmdc2), mRNA.","chr5",100,100,"NM_001024340","Q5XI14","NM_001024340","Rn.214591","brain| lung| pancreas| testis| adult","NM_001024340","GO:0006260","DNA replication","inferred from electronic annotation",{"$nulls":4},"NM_001024340","GO:0003677","DNA binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000030053","Pfam","IPR001208","Mini-chromosome maintenance, DNA-dependent ATPase","Coding",5.26,5.49,5.69,5.62,6.05,5.82]
["TC1300001427.rn.1",6.1,5.58,1.434,"up",0.0496775436305284,0.0497520098244975,"Prelp","proline/arginine-rich end leucine-rich repeat protein","chr13","-","NM_053385","coding",50749526,50773928,114,"13q13",84400,"NM_053385","RefSeq","Rattus norvegicus proline/arginine-rich end leucine-rich repeat protein (Prelp), mRNA.","chr13",100,100,"NM_053385","Q9EQP5","NM_053385","Rn.112602","adipose tissue| brain| connective tissue| dorsal root ganglion| eye| heart| kidney| lung| muscle| ovary| pineal gland| pituitary gland| prostate| spleen| testis| juvenile| adult","NM_053385","GO:0007569","cell aging","inferred from electronic annotation","NM_053385","GO:0005578","proteinaceous extracellular matrix","traceable author statement","NM_053385","GO:0005201","extracellular matrix structural constituent","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000004241","Pfam","IPR000372","Leucine-rich repeat-containing N-terminal","Coding",6.06,6.06,6.17,5.65,5.56,5.54]
["TC0X00001149.rn.1",6.45,7.14,-1.613,"down",0.0497194101739121,0.0497853055180326,"Rab33a","RAB33A, member RAS oncogene family","chrX","+","NM_001108257","coding",135348799,135360204,30,"Xq35",317580,"NM_001108257","RefSeq","Rattus norvegicus RAB33A, member RAS oncogene family (Rab33a), mRNA.","chrX",100,100,"NM_001108257","D3ZCU8","NM_001108257","Rn.28066","brain","NM_001108257","GO:0007264","small GTPase mediated signal transduction","inferred from electronic annotation","ENSRNOT00000008868","GO:0005622","intracellular","inferred from electronic annotation","NM_001108257","GO:0005525","GTP binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000008868","Pfam","IPR000795","Elongation factor, GTP-binding domain","Coding",6.6,6.48,6.28,7.15,7.07,7.21]
["TC0100000025.rn.1",9.13,9.41,-1.214,"down",0.0497254307960161,0.0497856171964032,"Ppil4","peptidylprolyl isomerase (cyclophilin)-like 4","chr1","+","NM_001108457","coding",1897314,1930311,170,"1p13",361449,"NM_001108457","RefSeq","Rattus norvegicus peptidylprolyl isomerase (cyclophilin)-like 4 (Ppil4), mRNA.","chr1",100,100,"NM_001108457","D4AEG3","NM_001108457","Rn.21237","adipose tissue| brain| colon| embryonic tissue| eye| heart| kidney| lung| pancreas| pituitary gland| prostate|tailbud embryo| metamorphosing embryo| fetus| adult","NM_001108457","GO:0000413","protein peptidyl-prolyl isomerization","inferred from electronic annotation",{"$nulls":4},"NM_001108457","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000021437","Pfam","IPR000504","RNA recognition motif domain","Coding",9.15,9.21,9.03,9.36,9.32,9.54]
["TC0100007222.rn.1",8.6,10.69,-4.257,"down",0.0497528702589975,0.0498044781460869,"Gng3","guanine nucleotide binding protein (G protein), gamma 3","chr1","-","NM_053658","coding",225033921,225035688,40,"1q43",114117,"NM_053658","RefSeq","Rattus norvegicus guanine nucleotide binding protein (G protein), gamma 3 (Gng3), mRNA.","chr1",100,100,"NM_053658","G3V8K2","NM_053658","Rn.198523","adrenal gland| brain| dorsal root ganglion| eye| heart| pancreas| pituitary gland| prostate| testis| vibrissa| adult","NM_053658","GO:0007186","G-protein coupled receptor signaling pathway","inferred from mutant phenotype","NM_053658","GO:0005834","heterotrimeric G-protein complex","inferred from electronic annotation","NM_053658","GO:0001664","G-protein coupled receptor binding","inferred from mutant phenotype","NM_053658","GenMAPP","G_Protein_Signaling","ENSRNOT00000026539","Pfam","IPR015898","G-protein gamma-like domain","Coding",8.65,8.65,8.51,10.7,10.62,10.74]
["TC0700003437.rn.1",4.7,4.09,1.526,"up",0.0497601746694291,0.0498089197984703,"Apol9a","apolipoprotein L 9a","chr7","-","NM_001025066","coding",118927013,118933778,60,"7q34",503164,"NM_001025066","RefSeq","Rattus norvegicus apolipoprotein L 9a (Apol9a), mRNA.","chr7",100,100,"NM_001025066","Q5XIB6","NM_001025066","Rn.198240","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| eye| heart| liver| lung| ovary| placenta| prostate| juvenile| adult","NM_001025066","GO:0006869","lipid transport","inferred from electronic annotation","NM_001025066","GO:0005576","extracellular region","inferred from electronic annotation","NM_001025066","GO:0008289","lipid binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000031951","Pfam","IPR008405","Apolipoprotein L","Coding",4.69,4.71,4.69,3.98,4.23,4.07]
["TC0800002093.rn.1",8.84,10.55,-3.272,"down",0.049765226265191,0.0498111060474003,"Elavl3","ELAV like neuron-specific RNA binding protein 3","chr8","-","NM_172324","coding",23029595,23063407,150,"8q13",282824,"NM_172324","RefSeq","Rattus norvegicus ELAV like neuron-specific RNA binding protein 3 (Elavl3), mRNA.","chr8",100,100,"NM_172324","Q76IJ9","NM_172324","Rn.22586","adrenal gland| brain| dorsal root ganglion| embryonic tissue| metamorphosing embryo| adult",{"$nulls":8},"NM_172324","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000018416","Pfam","IPR000504","RNA recognition motif domain","Coding",8.87,8.64,9.01,10.79,10.6,10.25]
["TC0600003318.rn.1",5.45,4.8,1.569,"up",0.0497852671246652,0.0498282942626503,"ENSMUSG00000095210","immunoglobulin heavy variable 5-9-1","chr6","-","MTA_TR1200007047.mm","coding",139033521,139033983,30,null,"NA","MTA_TR1200007047.mm","MTA2Rn6","immunoglobulin heavy variable 5-9-1","chr6",100,100,{"$nulls":24},"Coding",5.02,6.11,5.21,4.7,4.78,4.92]
["TC0400001368.rn.1",9.03,9.72,-1.613,"down",0.0497991105777592,0.0498364068352492,"Mgll","monoglyceride lipase","chr4","+","NM_138502","coding",120671455,120773458,260,"4q34",29254,"NM_138502","RefSeq","Rattus norvegicus monoglyceride lipase (Mgll), mRNA.","chr4",100,100,"NM_138502","Q8R431","NM_138502","Rn.40396","adipose tissue| adrenal gland| brain| connective tissue| eye| heart| kidney| liver| lung| ovary| pancreas| placenta| prostate| spleen| testis| fetus| juvenile| adult","NM_138502","GO:0006633","fatty acid biosynthetic process","inferred from electronic annotation","NM_138502","GO:0005811","lipid particle","traceable author statement","NM_138502","GO:0008289","lipid binding","inferred from mutant phenotype",{"$nulls":3},"ENSRNOT00000029125","Pfam","IPR000073","Alpha/beta hydrolase fold-1","Coding",9.04,9.01,9.05,9.69,9.75,9.71]
["TC0300003504.rn.1",4.15,3.48,1.591,"up",0.0498146101995397,0.0498433035986524,"Olr536","olfactory receptor 536","chr3","-","NM_001000564","coding",74596461,74597393,30,"3q24",366103,"NM_001000564","RefSeq","Rattus norvegicus olfactory receptor 536 (Olr536), mRNA.","chr3",100,100,"NM_001000564","D3ZTQ7","NM_001000564","Rn.142921",null,"NM_001000564","GO:0007186","G-protein coupled receptor signaling pathway","inferred from electronic annotation","NM_001000564","GO:0005886","plasma membrane","inferred from electronic annotation","NM_001000564","GO:0004930","G-protein coupled receptor activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000013201","Pfam","IPR000276","G protein-coupled receptor, rhodopsin-like","Coding",3.67,4.83,3.94,3.47,3.52,3.46]
["TC1500001623.rn.1",6.54,5.92,1.537,"up",0.0499244626925154,0.0499417127228151,null,null,"chr15","-",null,"coding",29680015,29680444,30,null,"NA","ENSRNOT00000075008","ENSEMBL","ensembl:known chromosome:Rnor_5.0:15:33503414:33503843:-1 gene:ENSRNOG00000046197 gene_biotype:protein_coding transcript_biotype:protein_coding","chr15",100,100,"ENSRNOT00000075008","M0RAM4","ENSRNOT00000075008","Rn.163273",{"$nulls":9},"ENSRNOT00000075008","GO:0005515","protein binding","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000075008","Pfam","IPR013106","Immunoglobulin V-set domain","Coding",6.45,7.01,6.16,5.72,5.89,6.16]
["TC0300001767.rn.1",13.16,14.34,-2.266,"down",0.0499301566835698,0.0499444628619772,"Cds2","CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2","chr3","+","NM_053643","coding",124896472,124935235,150,"3q36",114101,"NM_053643","RefSeq","Rattus norvegicus CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 (Cds2), mRNA.","chr3",100,100,"NM_053643","Q91XU8","NM_053643","Rn.212746","dorsal root ganglion| pineal gland| pituitary gland","NM_053643","GO:0016024","CDP-diacylglycerol biosynthetic process","inferred from electronic annotation","NM_053643","GO:0005743","mitochondrial inner membrane","inferred from electronic annotation","NM_053643","GO:0004605","phosphatidate cytidylyltransferase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000028888","Pfam","IPR000374","Phosphatidate cytidylyltransferase","Coding",12.99,13.24,13.24,14.53,14.29,14.19]
["TC1800001599.rn.1",3.72,4.03,-1.24,"down",0.0499453257988407,0.0499533710839926,null,null,"chr18","-",null,"coding",62291261,62292345,30,null,"NA","ENSRNOT00000037503","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:61481423:61482507:-1 gene:ENSRNOG00000024249 gene_biotype:protein_coding transcript_biotype:protein_coding","chr18",100,100,"ENSRNOT00000037503","F1M071",{"$nulls":3},"ENSRNOT00000037503","GO:0055114","oxidation-reduction process","inferred from electronic annotation",{"$nulls":4},"ENSRNOT00000037503","GO:0016491","oxidoreductase activity","inferred from electronic annotation",{"$nulls":3},"ENSRNOT00000037503","Pfam","IPR013149","Alcohol dehydrogenase, C-terminal","Coding",3.82,3.59,3.76,3.78,4.32,4]

{"sheet":"LncRNA P<0.05 FC>1.2","index":2,"n_rows":3615,"n_cols":55,"rows_kept":2250,"cut":true,"bounds":{"rows_first":1000,"rows_last":250,"rows_between":1000,"halvings":1}}
["probe_set","Model_average","Sham_average","FC","Regulation","P.Value","adj.P.Val","Gene.Symbol","Description","Chromosome","Strand","Public.Gene.IDs","biotype","Start","Stop","total_probes","Cytoband","Entrez.ID","mRNA.Accession","mRNA.Source","mRNA.Description","mRNA.SeqName","mRNA.Assignment.Score","mRNA.Assignment.Coverage","SwissProt.mRNA.Accession","SwissProt.Accession","UniGene.Accession","UniGene.ID","UniGene.Expression.Information","GO.Biological.Process.Accession","GO.Biological.Process.ID","GO.Biological.Process.Term","GO.Biological.Process.Evidence","GO.Cellular.Component.Accession","GO.Cellular.Component.ID","GO.Cellular.Component.Term","GO.Cellular.Component.Evidence","GO.Melecular.Function.Accession","GO.Molecular.Function.ID","GO.Molecular.Function.Term","GO.Molecular.Function.Evidence","Pathway.Accession","Pathway.Source","Pathway.Name","Protein.Domains.mRNA.Accession","Protein.Domains.Source","Protein.Domains.Accession","Protein.Domains.Description","locus.type","Model_01_expression","Model_02_expression","Model_03_expression","Sham_01_expression","Sham_02_expression","Sham_03_expression\n"]
["TC0700000752.rn.1",18.05,10.72,160.898,"up",2.11006212401714e-9,5.23626987947168e-6,"LOC102549714","uncharacterized LOC102549714","chr7","+","mRNARGD7644374_1","Noncoding",60282544,60283751,30,null,"NA","mRNARGD7644374_1","Rat Genome Database","uncharacterized LOC102549714","chr7",100,100,{"$nulls":24},"NonCoding",18.3,17.95,17.9,11.09,10.48,10.59]
["TC0500000221.rn.1",4.93,7.15,-4.659,"down",3.3990214306727e-8,1.61913224660652e-5,"NONMMUG028535","Non-coding transcript identified by NONCODE: Antisense","chr5","+","MTA_TR0400000305.mm","Noncoding",25575959,25580932,30,null,"NA","MTA_TR0400000305.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",4.85,4.91,5.02,7.18,7.3,6.98]
["TC1700002324.rn.1",5.26,6.79,-2.888,"down",8.15483591402757e-8,2.14632810094807e-5,"LOC102546307","uncharacterized LOC102546307","chr17","-","mRNARGD7573556_1","Noncoding",86590018,86745908,90,null,"NA","mRNARGD7573556_1","Rat Genome Database","uncharacterized LOC102546307","chr17",100,100,{"$nulls":24},"NonCoding",5.16,5.24,5.37,6.69,6.84,6.85]
["TC0500001718.rn.1",10.61,4.75,58.081,"up",8.97479226402421e-8,2.30301015909316e-5,"NCBI_Gene:100862132","PREDICTED:  uncharacterized LOC100862132 (LOC100862132), miscRNA.","chr5","+","MTA_TR0400005829.mm","Noncoding",155233654,155247015,30,null,"NA","MTA_TR0400005829.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862132 (LOC100862132), miscRNA.","chr5",100,100,{"$nulls":24},"NonCoding",10.89,10.2,10.75,4.93,4.9,4.43]
["TC0100000458.rn.1",5.26,8.56,-9.849,"down",9.01529507905905e-8,2.30301015909316e-5,"LOC102549775","uncharacterized LOC102549775","chr1","+","mRNARGD7547192_1","Noncoding",44591066,44622920,30,null,"NA","mRNARGD7547192_1","Rat Genome Database","uncharacterized LOC102549775","chr1",100,100,{"$nulls":24},"NonCoding",5.46,5.06,5.27,8.41,8.41,8.86]
["TC0200000863.rn.1",11.28,7.74,11.632,"up",1.07517844250413e-7,2.4302228422251e-5,"LOC100911856",null,"chr2","+",null,"Pseudogene",106892744,106893121,30,null,"NA",{"$nulls":4},"NA","NA",{"$nulls":24},"Pseudogene",11.26,11.13,11.44,7.75,7.94,7.53]
["TCUn_KL568483v100000002.rn.1",10.91,5.56,40.786,"up",2.26389084286544e-7,3.3414238081443e-5,"LOC102551008","uncharacterized LOC102551008","chrUn_KL568483v1","-","mRNARGD7561428_1","Noncoding",20813,22734,30,null,"NA","mRNARGD7561428_1","Rat Genome Database","uncharacterized LOC102551008","chrUn_KL568483v1",100,100,{"$nulls":24},"NonCoding",11.06,10.84,10.84,5.26,5.77,5.65]
["TC0400001677.rn.1",12.02,9.82,4.595,"up",4.23308489755398e-7,4.74405921002646e-5,null,null,"chr4","+",null,"Pseudogene",152544097,152544495,30,null,"NA","ENSRNOT00000052241","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:219628736:219629134:1 gene:ENSRNOG00000029083 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",12.17,11.89,12,9.95,9.9,9.6]
["TC0200003046.rn.1",13.77,11.39,5.205,"up",5.18071402132856e-7,5.20927398438913e-5,null,null,"chr2","-",null,"Pseudogene",57725111,57725510,30,null,"NA","ENSRNOT00000049673","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:79209863:79210262:-1 gene:ENSRNOG00000032470 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",13.79,13.52,13.99,11.53,11.44,11.2]
["TC0200000201.rn.1",6,9.45,-10.928,"down",9.24994323989114e-7,7.08011884269493e-5,"LOC102550768","uncharacterized LOC102550768","chr2","+","mRNARGD7638424_1","Noncoding",25250050,25301771,110,null,"NA","mRNARGD7638424_1","Rat Genome Database","uncharacterized LOC102550768","chr2",100,100,{"$nulls":24},"NonCoding",6.15,6.16,5.7,9.08,9.53,9.75]
["TC1100001675.rn.1",11.58,7.11,22.162,"up",9.54698133873752e-7,7.2104614276178e-5,"LOC102552892","uncharacterized LOC102552892","chr11","-","mRNARGD7632731_1","Noncoding",66645851,66648567,30,null,"NA","mRNARGD7632731_1","Rat Genome Database","uncharacterized LOC102552892","chr11",100,100,{"$nulls":24},"NonCoding",11.63,11.24,11.86,7.13,6.96,7.24]
["TC1400001461.rn.1",7.51,9.09,-2.99,"down",1.01983829005149e-6,7.60326649634525e-5,"NONMMUG033008","Non-coding transcript identified by NONCODE: Antisense","chr14","-","MTA_TR0500003037.mm","Noncoding",16363925,16365622,30,null,"NA","MTA_TR0500003037.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr14",100,100,{"$nulls":24},"NonCoding",7.47,7.36,7.7,9.18,8.97,9.13]
["TC1700001847.rn.1",12.07,10.15,3.784,"up",1.04916282867045e-6,7.6575661751405e-5,"LOC498755","hypothetical LOC498755","chr17","-","LOC498755.aSep08-unspliced","Pseudogene",45505578,45506374,30,null,"NA","LOC498755.aSep08-unspliced","Ace View","hypothetical LOC498755","chr17",100,100,{"$nulls":24},"Pseudogene",12.07,12.18,11.95,10.07,10.21,10.17]
["TC1500002063.rn.1",15.52,9.8,52.71,"up",1.20956063061357e-6,8.14390609084819e-5,"uc029xmt.1","non-coding RNA, oocyte_clustered_small_RNA8969, complete sequence.","chr15","-","MTA_TR0X00003415.mm","Noncoding",57250398,57250428,7,null,"NA","MTA_TR0X00003415.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA8969, complete sequence.","chr15",100,100,{"$nulls":24},"NonCoding",15.77,15.12,15.66,9.79,9.53,10.09]
["TC0200002822.rn.1",4.9,6.95,-4.141,"down",1.24980840230246e-6,8.25601017238353e-5,"LOC102556292","uncharacterized LOC102556292","chr2","-","mRNARGD7634188_1","Noncoding",36875826,36945280,30,null,"NA","mRNARGD7634188_1","Rat Genome Database","uncharacterized LOC102556292","chr2",100,100,{"$nulls":24},"NonCoding",4.88,4.96,4.86,6.95,6.9,7]
["TC0300004160.rn.1",11.35,10,2.549,"up",1.36760768141147e-6,8.57941647962663e-5,"LOC366190","similar to 60S ribosomal protein L7a (Surfeit locus protein 3)","chr3","-","LOC366190.aSep08-unspliced","Pseudogene",122606460,122607260,30,null,"NA","LOC366190.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7a (Surfeit locus protein 3)","chr3",100,100,{"$nulls":24},"Pseudogene",11.41,11.25,11.39,9.97,9.92,10.11]
["TC0300000762.rn.1",9.03,4.72,19.835,"up",1.53494118073485e-6,9.19429767260175e-5,null,null,"chr3","+",null,"Noncoding",55646738,55647523,30,null,"NA","NONRATT034916","NONCODE","Non-coding transcript identified by NONCODE","chr3",100,100,{"$nulls":24},"NonCoding",8.46,9.02,9.61,5.1,4.75,4.31]
["TC0400000084.rn.1",13.14,11.51,3.095,"up",1.56336586730285e-6,9.26867866242929e-5,"Rpl10a","ribosomal protein L10a-like","chr4","+","mRNARGD2636178_1","Pseudogene",6029200,6029951,30,null,"NA","mRNARGD2636178_1","Rat Genome Database","ribosomal protein L10a-like","chr4",100,100,{"$nulls":24},"Pseudogene",13.21,12.94,13.28,11.43,11.69,11.41]
["TC0600001134.rn.1",12.07,10.3,3.411,"up",1.64714551308307e-6,9.53752156925534e-5,"LOC100912402","polyadenylate-binding protein 1-like","chr6","+","mRNARGD6487546_1","Pseudogene",106462696,106464295,30,null,"NA","mRNARGD6487546_1","Rat Genome Database","polyadenylate-binding protein 1-like","chr6",100,100,{"$nulls":24},"Pseudogene",12.18,12.1,11.94,10.25,10.48,10.17]
["TC1400001158.rn.1",3.72,5.73,-4.028,"down",1.68259587191638e-6,9.56987984677986e-5,"KnowTID_00001123","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR1100000888.mm","Noncoding",108927332,108928548,30,null,"NA","MTA_TR1100000888.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",3.7,3.89,3.58,5.5,5.87,5.82]
["TC1700001846.rn.1",12.06,10.22,3.58,"up",2.11732720497501e-6,0.00010817146669297,null,null,"chr17","-",null,"Pseudogene",45463939,45464735,30,null,"NA","ENSRNOT00000044873","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:58003356:58004152:1 gene:ENSRNOG00000050196 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",12.04,12.18,11.96,10.13,10.25,10.29]
["TC1100001789.rn.1",11.83,10.82,2.014,"up",2.13301754089617e-6,0.00010817146669297,"LOC100911343","choline-phosphate cytidylyltransferase A-like","chr11","-","mRNARGD7575320_1","Noncoding",72774211,72774901,30,null,"NA","mRNARGD7575320_1","Rat Genome Database","choline-phosphate cytidylyltransferase A-like","chr11",100,100,{"$nulls":24},"NonCoding",11.8,11.93,11.75,10.74,10.8,10.91]
["TC0400002165.rn.1",5.84,8.77,-7.621,"down",2.16081393946581e-6,0.00010817146669297,"chorwer","Unannotated AceView Transcript","chr4","-","chorwer.aSep08","Noncoding",6669290,6674855,50,null,"NA","chorwer.aSep08","Ace View","Unannotated AceView Transcript","chr4",100,100,{"$nulls":24},"NonCoding",6,5.67,5.86,9.04,8.37,8.9]
["TC0400002088.rn.1",6.64,7.85,-2.313,"down",2.33694120372574e-6,0.000115985730428342,"ENSMUSG00000097505","predicted gene, 26540, Non-coding transcript identified by NONCODE: Antisense","chr4","+","MTA_TR0600005917.mm","Noncoding",183470737,183473192,30,null,"NA","MTA_TR0600005917.mm","MTA2Rn6","predicted gene, 26540, Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",6.58,6.57,6.76,7.87,7.94,7.73]
["TC2000000212.rn.1",10.63,7.88,6.727,"up",2.44788730445595e-6,0.000118154400993624,null,null,"chr20","+",null,"Noncoding",5351663,5353888,30,null,"NA","NONRATT032842","NONCODE","Non-coding transcript identified by NONCODE","chr20",100,100,{"$nulls":24},"NonCoding",10.54,10.48,10.86,8.13,8.08,7.42]
["TC0X00001612.rn.1",7.48,4.51,7.835,"up",2.46559348066463e-6,0.000118154400993624,"LOC102549869","uncharacterized LOC102549869","chrX","-","mRNARGD7702172_1","Noncoding",28686556,28698973,60,null,"NA","mRNARGD7702172_1","Rat Genome Database","uncharacterized LOC102549869","chrX",100,100,{"$nulls":24},"NonCoding",7.52,7.4,7.51,4.3,4.79,4.43]
["TC1800000634.rn.1",15.27,14.07,2.297,"up",2.51371208461471e-6,0.000118154400993624,"Ribosomal_S12.0","Unannotated AceView Transcript","chr18","+","Ribosomal_S12.0.aSep08-unspliced","Pseudogene",56965228,56965735,30,null,"NA","Ribosomal_S12.0.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr18",100,100,{"$nulls":24},"Pseudogene",15.35,15.23,15.24,14.2,14.13,13.88]
["TC1100000101.rn.1",6.51,4.66,3.605,"up",3.00240825835263e-6,0.000133129109890052,"NONMMUG016970","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003009.mm","Noncoding",15910632,15912905,30,null,"NA","MTA_TR1600003009.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",6.37,6.6,6.56,4.84,4.43,4.72]
["TC0800001907.rn.1",11.11,10.12,1.986,"up",3.11511736241543e-6,0.000135281759256296,"Rpl13","60S ribosomal protein L13-like","chr8","-","mRNARGD2652779_1","Pseudogene",6749716,6750459,30,null,"NA","mRNARGD2652779_1","Rat Genome Database","60S ribosomal protein L13-like","chr8",100,100,{"$nulls":24},"Pseudogene",11.11,11.08,11.13,10.18,10.19,9.99]
["TC0700001478.rn.1",12.77,10.74,4.084,"up",3.16759192656588e-6,0.000136876217304418,"Rpl22",null,"chr7","+",null,"Pseudogene",121773541,121773923,30,null,"NA","ENSRNOT00000056134","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:121763672:121764054:1 gene:ENSRNOG00000037185 gene_biotype:pseudogene transcript_biotype:pseudogene","chr7",100,100,{"$nulls":24},"Pseudogene",12.84,12.63,12.83,10.92,10.78,10.53]
["TC1000000615.rn.1",13.21,11.88,2.514,"up",3.31157272744138e-6,0.000139964306200448,"Rpl13","60S ribosomal protein L13-like","chr10","+","mRNARGD2326856_1","Pseudogene",40322660,40323414,30,null,"NA","mRNARGD2326856_1","Rat Genome Database","60S ribosomal protein L13-like","chr10",100,100,{"$nulls":24},"Pseudogene",13.21,13.1,13.33,11.87,12.05,11.72]
["TC0700001663.rn.1",3.52,5.13,-3.053,"down",3.46803878037586e-6,0.000143469438197371,"LOC102550629","uncharacterized LOC102550629","chr7","+","mRNARGD7563479_1","Noncoding",131996841,132004431,30,null,"NA","mRNARGD7563479_1","Rat Genome Database","uncharacterized LOC102550629","chr7",100,100,{"$nulls":24},"NonCoding",3.52,3.46,3.58,5.24,4.88,5.27]
["TC1000000623.rn.1",10.54,7.39,8.877,"up",4.0967637468432e-6,0.000159135019957573,"NCBI_Gene:100862216","PREDICTED:  uncharacterized LOC100862216, transcript variant 2 (LOC100862216), miscRNA.","chr10","+","MTA_TR1100002189.mm","Noncoding",40742390,40743338,36,null,"NA","MTA_TR1100002189.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862216, transcript variant 2 (LOC100862216), miscRNA.","chr10",100,100,{"$nulls":24},"NonCoding",10.36,10.49,10.78,7.62,7.37,7.19]
["TC1400000729.rn.1",3.62,4.73,-2.158,"down",4.15993563578602e-6,0.000159958913177039,"LOC102555045","uncharacterized LOC102555045","chr14","+","mRNARGD7547539_1","Noncoding",72474404,72507977,30,null,"NA","mRNARGD7547539_1","Rat Genome Database","uncharacterized LOC102555045","chr14",100,100,{"$nulls":24},"NonCoding",3.66,3.62,3.59,4.53,4.77,4.9]
["TC1000000009.rn.1",14.87,13.21,3.16,"up",4.20148098678022e-6,0.000160757546743082,"LOC679589","similar to 40S ribosomal protein S3a (V-fos transformation effector protein)","chr10","+","LOC679589.aSep08-unspliced","Pseudogene",641641,642524,30,null,"NA","LOC679589.aSep08-unspliced","Ace View","similar to 40S ribosomal protein S3a (V-fos transformation effector protein)","chr10",100,100,{"$nulls":24},"Pseudogene",15.03,14.98,14.6,13.07,13.4,13.16]
["TC1700002184.rn.1",3.51,5.72,-4.627,"down",4.33677915971623e-6,0.000163320082800204,"LOC102549442","uncharacterized LOC102549442","chr17","-","mRNARGD7583054_1","Noncoding",74775436,74784922,40,null,"NA","mRNARGD7583054_1","Rat Genome Database","uncharacterized LOC102549442","chr17",100,100,{"$nulls":24},"NonCoding",3.74,3.43,3.37,5.66,5.85,5.64]
["TC0800000087.rn.1",7.59,5.16,5.389,"up",4.67605672327261e-6,0.000170288849769326,"KnowTID_00007857","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900000228.mm","Noncoding",11942043,11946223,30,null,"NA","MTA_TR0900000228.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",7.35,7.44,7.99,4.8,5.33,5.36]
["TC0100004744.rn.1",5.59,6.65,-2.085,"down",4.7897774780921e-6,0.000173340051191537,"LOC102547903","uncharacterized LOC102547903","chr1","-","mRNARGD7509494_1","Noncoding",70170403,70210681,90,null,"NA","mRNARGD7509494_1","Rat Genome Database","uncharacterized LOC102547903","chr1",100,100,{"$nulls":24},"NonCoding",5.64,5.66,5.46,6.51,6.79,6.65]
["TC0300004192.rn.1",12.93,11.14,3.458,"up",4.89938971876489e-6,0.000175117898775031,"LOC296165","INTERACTS WITH disodium selenite (ortholog) AND  paracetamol (ortholog) AND  vorinostat (ortholog)","chr3","-","mRNARGD6582081_1","Pseudogene",123664159,123664760,30,null,"NA","mRNARGD6582081_1","Rat Genome Database","INTERACTS WITH disodium selenite (ortholog) AND  paracetamol (ortholog) AND  vorinostat (ortholog)","chr3",100,100,{"$nulls":24},"Pseudogene",12.91,12.79,13.08,11.39,10.84,11.19]
["TC0200003722.rn.1",11.72,10.19,2.888,"up",5.10680595075384e-6,0.000180305540997043,null,null,"chr2","-",null,"Pseudogene",146952528,146952922,30,null,"NA","ENSRNOT00000012852","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:166368101:166368495:-1 gene:ENSRNOG00000009697 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",11.86,11.86,11.45,10.29,10.27,10]
["TC0600001698.rn.1",6.43,5.4,2.042,"up",5.57296220090889e-6,0.000191698864142551,"NONMMUG010141","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200003840.mm","Noncoding",145493119,145496590,30,null,"NA","MTA_TR1200003840.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",6.28,6.56,6.45,5.31,5.49,5.39]
["TC0400002395.rn.1",10.62,5.42,36.758,"up",5.6174514932387e-6,0.000192092500170908,"NCBI_Gene:100862129","PREDICTED:  uncharacterized LOC100862129 (LOC100862129), miscRNA.","chr4","-","MTA_TR0600006032.mm","Noncoding",29564290,29571817,30,null,"NA","MTA_TR0600006032.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862129 (LOC100862129), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",10.58,10.91,10.36,5.6,5.52,5.14]
["TC0100001884.rn.1",4.67,5.83,-2.235,"down",6.14057374346497e-6,0.000201201312334788,"KnowTID_00006590","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR0700004202.mm","Noncoding",143279673,143281784,30,null,"NA","MTA_TR0700004202.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",4.61,4.71,4.69,5.58,5.94,5.96]
["TC0800003640.rn.1",6.42,4.72,3.249,"up",6.15035961371091e-6,0.000201201312334788,"NONMMUG044338","Non-coding transcript identified by NONCODE: Antisense","chr8","-","MTA_TR0900010874.mm","Noncoding",133213589,133214250,30,null,"NA","MTA_TR0900010874.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr8",100,100,{"$nulls":24},"NonCoding",6.71,6.19,6.35,4.66,4.72,4.79]
["TC1600001561.rn.1",14.86,13.45,2.657,"up",6.31059544796471e-6,0.000203757162688838,"LOC680257","similar to 60S ribosomal protein L7","chr16","-","LOC680257.aSep08-unspliced","Pseudogene",36450160,36451027,30,null,"NA","LOC680257.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7","chr16",100,100,{"$nulls":24},"Pseudogene",14.92,14.89,14.78,13.56,13.62,13.17]
["TC1600000360.rn.1",10.14,6.56,11.959,"up",6.65669962149266e-6,0.000207490190451666,null,null,"chr16","+",null,"Pseudogene",23984652,23985285,30,null,"NA","ENSRNOT00000047030","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:23868430:23869063:1 gene:ENSRNOG00000029400 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",10.37,9.45,10.6,6.52,6.64,6.51]
["TC1000002448.rn.1",14.52,13.18,2.532,"up",6.70537029807397e-6,0.000207998191871148,null,null,"chr10","-",null,"Pseudogene",15318286,15318607,30,null,"NA","ENSRNOT00000031538","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:15131261:15131582:-1 gene:ENSRNOG00000021511 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",14.78,14.28,14.5,13.22,13.25,13.08]
["TC0500001277.rn.1",14.44,12.92,2.868,"up",6.77555255578031e-6,0.000208646548156856,"Ribosomal_S10.2","Unannotated AceView Transcript","chr5","+","Ribosomal_S10.2.aSep08-unspliced","Pseudogene",135687415,135687933,30,null,"NA","Ribosomal_S10.2.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr5",100,100,{"$nulls":24},"Pseudogene",14.52,14.25,14.55,13.04,13.02,12.71]
["TC0600000278.rn.1",6.13,7.58,-2.732,"down",6.87977867812595e-6,0.000210414381719433,"LOC100910821","uncharacterized LOC100910821","chr6","+","mRNARGD6496096_1","Noncoding",26387755,26389524,30,null,"NA","mRNARGD6496096_1","Rat Genome Database","uncharacterized LOC100910821","chr6",100,100,{"$nulls":24},"NonCoding",6.08,6.16,6.14,7.51,7.83,7.39]
["TC0200000161.rn.1",5.96,9.78,-14.123,"down",7.21722411970188e-6,0.000217222591896659,"NONMMUG011610","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR1300002878.mm","Noncoding",22970012,22971920,30,null,"NA","MTA_TR1300002878.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.05,5.76,6.07,9.21,9.64,10.48]
["TC0400000901.rn.1",12.1,10.57,2.888,"up",7.53487436049136e-6,0.000222221226682675,"LOC100365386","hypothetical LOC100365386","chr4","+","mRNARGD7688140_1","Noncoding",80539527,80558796,30,null,"NA","mRNARGD7688140_1","Rat Genome Database","hypothetical LOC100365386","chr4",100,100,{"$nulls":24},"NonCoding",12.35,11.89,12.05,10.69,10.54,10.48]
["TC0100006152.rn.1",14.02,11.96,4.17,"up",7.87076095913838e-6,0.000227871647701988,"LOC685041","similar to 60S ribosomal protein L7a","chr1","-","LOC685041.aSep08-unspliced","Pseudogene",166281984,166282871,30,null,"NA","LOC685041.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7a","chr1",100,100,"ENSRNOT00000047494","D3ZU22","ENSRNOT00000047494","Rn.201303","colon| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| pituitary gland| small intestine| spleen|tailbud embryo| metamorphosing embryo| juvenile| adult","ENSRNOT00000047494","GO:0042254","ribosome biogenesis","inferred from electronic annotation","ENSRNOT00000047494","GO:0016020","membrane","inferred from electronic annotation",{"$nulls":11},"Pseudogene",14.05,13.95,14.06,12.11,11.97,11.81]
["TC1700000275.rn.1",12.76,10.42,5.063,"up",8.05120075057437e-6,0.000228966880551075,"LOC100361933","ribosomal protein S12-like","chr17","+","mRNARGD2389268_1","Pseudogene",15656460,15656986,16,null,"NA","mRNARGD2389268_1","Rat Genome Database","ribosomal protein S12-like","chr17",100,100,{"$nulls":24},"Pseudogene",12.81,12.48,12.99,10.67,10.58,10.02]
["TC1700002255.rn.1",12.27,7.55,26.355,"up",8.06099968215055e-6,0.000228966880551075,"NCBI_Gene:100862060","PREDICTED:  uncharacterized LOC100862060 (LOC100862060), miscRNA.","chr17","-","MTA_TR0200010442.mm","Noncoding",80879328,80883331,30,null,"NA","MTA_TR0200010442.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862060 (LOC100862060), miscRNA.","chr17",100,100,{"$nulls":24},"NonCoding",12.78,11.88,12.15,7.83,7.19,7.63]
["TC1200000979.rn.1",10.88,9.39,2.809,"up",8.15545753966509e-6,0.000228966880551075,"uc009ara.2","RNA for germline small RNA gsRNA90, complete sequence.","chr12","-","MTA_TR0500013256.mm","Noncoding",6526260,6526305,22,null,"NA","MTA_TR0500013256.mm","MTA2Rn6","RNA for germline small RNA gsRNA90, complete sequence.","chr12",100,100,{"$nulls":24},"NonCoding",10.69,10.84,11.1,9.4,9.17,9.61]
["TC1500002144.rn.1",11.38,9.8,2.99,"up",8.47710548995912e-6,0.000231660908069955,null,null,"chr15","-",null,"Pseudogene",61701442,61701835,30,null,"NA","ENSRNOT00000073953","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:65365754:65366147:-1 gene:ENSRNOG00000048527 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",11.56,11.4,11.18,9.9,9.98,9.52]
["TC0900001603.rn.1",6.37,7.07,-1.625,"down",8.69145177447718e-6,0.000233330542586412,"ENSMUSG00000086472","predicted gene 16172, Non-coding transcript identified by NONCODE: Antisense, putative novel transcript","chr9","-","MTA_TR1700003294.mm","Noncoding",17719523,17722197,30,null,"NA","MTA_TR1700003294.mm","MTA2Rn6","predicted gene 16172, Non-coding transcript identified by NONCODE: Antisense, putative novel transcript","chr9",100,100,{"$nulls":24},"NonCoding",6.36,6.45,6.31,7.02,7.02,7.17]
["TC0600000035.rn.1",4.48,5.46,-1.972,"down",8.8569521976533e-6,0.000234533178672292,"KnowTID_00003544","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1700004454.mm","Noncoding",2730197,2731614,30,null,"NA","MTA_TR1700004454.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",4.54,4.57,4.34,5.5,5.41,5.47]
["TC0300001303.rn.1",4.45,5.79,-2.532,"down",8.90443467839618e-6,0.000234533178672292,"uc008ljt.1","predicted gene 13883","chr3","+","MTA_TR0200004980.mm","Noncoding",94180763,94185413,40,null,"NA","MTA_TR0200004980.mm","MTA2Rn6","predicted gene 13883","chr3",100,100,{"$nulls":24},"NonCoding",4.54,4.31,4.49,5.83,6.01,5.54]
["TC1300000834.rn.1",4.9,5.74,-1.79,"down",8.90652176583092e-6,0.000234533178672292,"LOC102546416","uncharacterized LOC102546416","chr13","+","mRNARGD7502669_1","Noncoding",93094262,93096199,30,null,"NA","mRNARGD7502669_1","Rat Genome Database","uncharacterized LOC102546416","chr13",100,100,{"$nulls":24},"NonCoding",4.99,4.87,4.83,5.73,5.84,5.65]
["TC0400003405.rn.1",4.88,6.66,-3.434,"down",9.0293884151532e-6,0.00023633733860249,"KnowTID_00006397","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","-","MTA_TR0600009148.mm","Noncoding",128121191,128122352,30,null,"NA","MTA_TR0600009148.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",4.88,4.84,4.92,6.49,6.84,6.66]
["TC0100006718.rn.1",12.88,11.54,2.532,"up",9.21084831437959e-6,0.000238808426968788,"Thymosin.4","Unannotated AceView Transcript","chr1","-","Thymosin.4.aSep08-unspliced","Pseudogene",199276801,199277453,30,null,"NA","Thymosin.4.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"Pseudogene",13.06,12.83,12.75,11.58,11.7,11.34]
["TC0700000531.rn.1",6.19,4.67,2.868,"up",9.7225474109564e-6,0.000246777430778651,"ENSMUSG00000085409","predicted gene 16155, Non-coding transcript identified by NONCODE: Linc, putative novel transcript","chr7","+","MTA_TR1000003690.mm","Noncoding",35363308,35365038,30,null,"NA","MTA_TR1000003690.mm","MTA2Rn6","predicted gene 16155, Non-coding transcript identified by NONCODE: Linc, putative novel transcript","chr7",100,100,{"$nulls":24},"NonCoding",6,6.38,6.2,4.76,4.54,4.71]
["TC0700003305.rn.1",4.96,7.72,-6.774,"down",9.87486265154704e-6,0.000249688848791883,"KnowTID_00002975","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1500004963.mm","Noncoding",113893553,113894258,30,null,"NA","MTA_TR1500004963.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",5.07,5.12,4.7,7.49,8.03,7.63]
["TC0800001732.rn.1",7.45,5.72,3.317,"up",1.01722286296557e-5,0.000253154417658666,"LOC681017","similar to acidic ribosomal phosphoprotein P0","chr8","+","LOC681017.aSep08-unspliced","Pseudogene",127976578,127977638,30,null,"NA","LOC681017.aSep08-unspliced","Ace View","similar to acidic ribosomal phosphoprotein P0","chr8",100,100,{"$nulls":24},"Pseudogene",7.68,7.27,7.41,5.9,5.69,5.56]
["TC1100001183.rn.1",10.62,9.63,1.986,"up",1.0292741638343e-5,0.000254694038461049,null,null,"chr11","-",null,"Pseudogene",22517589,22517937,30,null,"NA","ENSRNOT00000002629","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:11:26153569:26153917:-1 gene:ENSRNOG00000001918 gene_biotype:pseudogene transcript_biotype:pseudogene","chr11",100,100,{"$nulls":24},"Pseudogene",10.75,10.55,10.55,9.75,9.68,9.46]
["TC0500003571.rn.1",3.97,5.68,-3.272,"down",1.03275019944139e-5,0.000254765706155788,"LOC102548116","uncharacterized LOC102548116","chr5","-","mRNARGD7549444_1","Noncoding",142505670,142550161,90,null,"NA","mRNARGD7549444_1","Rat Genome Database","uncharacterized LOC102548116","chr5",100,100,{"$nulls":24},"NonCoding",4.08,3.91,3.93,5.64,5.84,5.57]
["TC1800000320.rn.1",10.53,6.89,12.467,"up",1.09878872933989e-5,0.000267325756545704,null,null,"chr18","+",null,"Noncoding",29647839,29647979,30,null,"NA","NONRATT025802","NONCODE","Non-coding transcript identified by NONCODE","chr18",100,100,{"$nulls":24},"NonCoding",10.52,10.46,10.6,7.49,6.77,6.41]
["TC0400001963.rn.1",6.56,3.71,7.21,"up",1.12243432975703e-5,0.000268197145804701,"NONMMUG036813","Non-coding transcript identified by NONCODE: Antisense","chr4","+","MTA_TR0600005499.mm","Noncoding",170913886,170917452,50,null,"NA","MTA_TR0600005499.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",6.8,6.36,6.52,3.38,3.81,3.95]
["TC1300000315.rn.1",8.7,7.28,2.676,"up",1.12379903412015e-5,0.000268197145804701,"LOC102553198","uncharacterized LOC102553198","chr13","+","mRNARGD7733567_1","Noncoding",51357082,51378118,30,null,"NA","mRNARGD7733567_1","Rat Genome Database","uncharacterized LOC102553198","chr13",100,100,{"$nulls":24},"NonCoding",8.57,8.8,8.73,7.13,7.41,7.3]
["TC1000000393.rn.1",5.51,8.12,-6.105,"down",1.13450692069379e-5,0.000269596712987303,"LOC102548330","uncharacterized LOC102548330","chr10","+","mRNARGD7626983_1","Noncoding",25939187,25967534,30,null,"NA","mRNARGD7626983_1","Rat Genome Database","uncharacterized LOC102548330","chr10",100,100,{"$nulls":24},"NonCoding",5.36,5.44,5.73,7.86,8.18,8.33]
["TC1400001104.rn.1",6.71,4.94,3.411,"up",1.15147494302392e-5,0.000271769989609627,"NONMMUG005461","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR1100000733.mm","Noncoding",106132561,106137162,50,null,"NA","MTA_TR1100000733.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",6.65,6.71,6.78,4.82,4.83,5.16]
["TC0600000348.rn.1",7.09,5.76,2.514,"up",1.16049663680823e-5,0.00027252164839353,"NONMMUG008443","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200000204.mm","Noncoding",29131439,29131751,30,null,"NA","MTA_TR1200000204.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",7,7,7.28,5.82,5.76,5.69]
["TC1700000621.rn.1",12.6,8.33,19.293,"up",1.18872651406353e-5,0.000278299983908467,"LOC102548059","uncharacterized LOC102548059","chr17","+","mRNARGD7740944_1","Noncoding",42318426,42325313,30,null,"NA","mRNARGD7740944_1","Rat Genome Database","uncharacterized LOC102548059","chr17",100,100,{"$nulls":24},"NonCoding",13.32,12.09,12.38,7.94,8.88,8.16]
["TC0800000755.rn.1",13.49,11.6,3.706,"up",1.2500810925901e-5,0.00028584826801328,null,null,"chr8","+",null,"Pseudogene",60618776,60619641,30,null,"NA","ENSRNOT00000036260","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:59189374:59190239:1 gene:ENSRNOG00000022382 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",13.77,13.16,13.54,11.61,11.64,11.54]
["TC0100005712.rn.1",6.52,5.03,2.809,"up",1.38911663089559e-5,0.000302385275630167,"NONMMUG038264","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR0700011952.mm","Noncoding",128243519,128247513,30,null,"NA","MTA_TR0700011952.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",6.32,6.62,6.61,4.94,4.85,5.3]
["TC0200000842.rn.1",16.97,15.49,2.789,"up",1.4362654553586e-5,0.000306880285670778,"LOC102554216","uncharacterized LOC102554216","chr2","+","mRNARGD7648007_1","Noncoding",103872102,103878175,30,null,"NA","mRNARGD7648007_1","Rat Genome Database","uncharacterized LOC102554216","chr2",100,100,{"$nulls":24},"NonCoding",17.2,17.01,16.69,15.49,15.57,15.42]
["TC1700001989.rn.1",5.16,7.22,-4.17,"down",1.44878162610288e-5,0.000308025876251911,"koyfer","Unannotated AceView Transcript","chr17","-","koyfer.aSep08","Noncoding",59976439,59979246,30,null,"NA","koyfer.aSep08","Ace View","Unannotated AceView Transcript","chr17",100,100,{"$nulls":24},"NonCoding",5.39,5.05,5.03,7.1,7.33,7.22]
["TC0700000936.rn.1",10.36,9.4,1.945,"up",1.49470543426419e-5,0.000310580479648364,null,null,"chr7","+",null,"Pseudogene",72580735,72581179,30,null,"NA","ENSRNOT00000029671","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:72754149:72754593:1 gene:ENSRNOG00000029081 gene_biotype:pseudogene transcript_biotype:pseudogene","chr7",100,100,{"$nulls":24},"Pseudogene",10.5,10.35,10.23,9.42,9.54,9.25]
["TC0100007988.rn.1",10.29,8.67,3.074,"up",1.56604884758401e-5,0.00031753524817359,"LOC100909561","nuclease-sensitive element-binding protein 1-like","chr1","-","ENSRNOT00000071935","Pseudogene",281924965,281926267,30,null,100909561,"ENSRNOT00000071935","ENSEMBL","ensembl:known chromosome:Rnor_5.0:1:289266003:289266896:-1 gene:ENSRNOG00000045573 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,null,null,"ENSRNOT00000071935","Rn.158180","liver| placenta| adult",{"$nulls":19},"Pseudogene",10.37,10.37,10.13,8.88,8.5,8.62]
["TC1300000545.rn.1",12.52,11.13,2.621,"up",1.61168921481798e-5,0.000324410815186595,"RGD1566344","similar to eukaryotic translation elongation factor 1 alpha 1","chr13","+","ENSRNOT00000005341","Pseudogene",73868291,73870174,30,"13q21",679963,"ENSRNOT00000005341","ENSEMBL","ensembl:known chromosome:Rnor_5.0:13:78792709:78794553:1 gene:ENSRNOG00000004012 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,"ENSRNOT00000005341","P62630","ENSRNOT00000005341","Rn.230784","adipose tissue| adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| small intestine| spleen| testis| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult","ENSRNOT00000005341","GO:0006184","GTP catabolic process","inferred from electronic annotation","ENSRNOT00000005341","GO:0005634","nucleus","inferred from direct assay","ENSRNOT00000005341","GO:0000166","nucleotide binding","inferred from electronic annotation",{"$nulls":7},"Pseudogene",12.66,12.54,12.35,11.16,11.26,10.98]
["TC0200003801.rn.1",6.14,7.23,-2.129,"down",1.73426186651185e-5,0.000340021025769496,"LOC102551128","uncharacterized LOC102551128","chr2","-","mRNARGD7576173_1","Noncoding",156381066,156386069,30,null,"NA","mRNARGD7576173_1","Rat Genome Database","uncharacterized LOC102551128","chr2",100,100,{"$nulls":24},"NonCoding",6.29,6.1,6.02,7.12,7.18,7.4]
["TC0X00000720.rn.1",15.39,13.99,2.639,"up",1.77591393802189e-5,0.000343917514129077,"LOC503455","similar to 60S ribosomal protein L7","chrX","+","LOC503455.aSep08-unspliced","Pseudogene",77617764,77618355,30,null,"NA","LOC503455.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7","chrX",100,100,{"$nulls":24},"Pseudogene",15.48,15.25,15.45,13.95,14.22,13.79]
["TC0600002527.rn.1",10.66,9.68,1.972,"up",1.81434306290858e-5,0.000348450019090491,"LOC366632","similar to 40S ribosomal protein S6","chr6","-","LOC366632.aSep08-unspliced","Pseudogene",78707047,78707814,30,null,"NA","LOC366632.aSep08-unspliced","Ace View","similar to 40S ribosomal protein S6","chr6",100,100,{"$nulls":24},"Pseudogene",10.68,10.61,10.69,9.65,9.76,9.64]
["TC0500000204.rn.1",8.88,7.8,2.114,"up",1.82826435754726e-5,0.000348997584120368,"LOC688470","similar to ribosomal protein L24","chr5","+","LOC688470.aSep08-unspliced","Pseudogene",24693689,24694250,30,null,"NA","LOC688470.aSep08-unspliced","Ace View","similar to ribosomal protein L24","chr5",100,100,{"$nulls":24},"Pseudogene",9.07,8.69,8.87,7.76,7.93,7.71]
["TC1100001192.rn.1",12.5,10.82,3.204,"up",1.84003471239303e-5,0.000350474155580914,"LOC498050","hypothetical LOC498050","chr11","-","LOC498050.aSep08-unspliced","Pseudogene",23701992,23702845,30,null,"NA","LOC498050.aSep08-unspliced","Ace View","hypothetical LOC498050","chr11",100,100,{"$nulls":24},"Pseudogene",12.45,12.45,12.59,10.92,10.77,10.77]
["TC0200002870.rn.1",4.73,6.28,-2.928,"down",1.85354532530589e-5,0.000351945399175456,"NONMMUG011939","Non-coding transcript identified by NONCODE: Antisense","chr2","-","MTA_TR1300007726.mm","Noncoding",41465266,41468517,30,null,"NA","MTA_TR1300007726.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",4.63,4.63,4.94,6.16,6.44,6.23]
["TC1400002176.rn.1",7.11,5.83,2.428,"up",1.86440390259503e-5,0.000352311593554657,null,null,"chr14","-",null,"Pseudogene",85893121,85893520,30,null,"NA","ENSRNOT00000037005","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:86585251:86585650:-1 gene:ENSRNOG00000026873 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",7.2,7.06,7.06,6.12,5.75,5.62]
["TC1400001150.rn.1",5.71,7.3,-3.01,"down",1.88403716862681e-5,0.000354097191222255,null,null,"chr14","+",null,"Pseudogene",108306095,108306875,30,null,"NA","ENSRNOT00000034363","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:105141952:105142732:1 gene:ENSRNOG00000025903 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",5.85,5.71,5.57,7.11,7.34,7.45]
["TC0200001406.rn.1",5.69,4.81,1.84,"up",1.89882523899551e-5,0.000355819775907131,"LOC102547227","uncharacterized LOC102547227","chr2","+","mRNARGD7724891_1","Noncoding",174426561,174453470,50,null,"NA","mRNARGD7724891_1","Rat Genome Database","uncharacterized LOC102547227","chr2",100,100,{"$nulls":24},"NonCoding",5.57,5.86,5.65,4.84,4.69,4.89]
["TC1300000889.rn.1",8.2,3.6,24.251,"up",1.92036105654093e-5,0.00035869453670078,"LOC102553757","uncharacterized LOC102553757","chr13","+","mRNARGD7553382_1","Noncoding",97440942,97445884,30,null,"NA","mRNARGD7553382_1","Rat Genome Database","uncharacterized LOC102553757","chr13",100,100,{"$nulls":24},"NonCoding",7.85,7.85,8.9,3.45,3.08,4.28]
["TC1000002496.rn.1",6.17,8.33,-4.469,"down",1.9428202449722e-5,0.000361335444062228,null,null,"chr10","-",null,"Noncoding",17045486,17045956,30,null,"NA","NONRATT010748","NONCODE","Non-coding transcript identified by NONCODE","chr10",100,100,{"$nulls":24},"NonCoding",5.98,6.32,6.2,8.4,8.23,8.37]
["TC0100005711.rn.1",7.84,6.05,3.458,"up",2.01643589748319e-5,0.000370735420075241,"NONMMUG038263","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR0700011948.mm","Noncoding",128222864,128225215,50,null,"NA","MTA_TR0700011948.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",7.71,7.74,8.06,5.78,5.94,6.44]
["TC0400001771.rn.1",5.34,7.25,-3.758,"down",2.02768681418048e-5,0.000371550080687016,"NONMMUG036566","Non-coding transcript identified by NONCODE: Antisense","chr4","+","MTA_TR0600004871.mm","Noncoding",157375615,157376209,30,null,"NA","MTA_TR0600004871.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",5.61,5.08,5.32,7.12,7.47,7.17]
["TC0200002990.rn.1",15.08,12.98,4.287,"up",2.05739374537024e-5,0.000374230227757345,"LOC102546932","uncharacterized LOC102546932","chr2","-","mRNARGD7575684_1","Noncoding",52638287,52649708,15,null,"NA","mRNARGD7575684_1","Rat Genome Database","uncharacterized LOC102546932","chr2",100,100,{"$nulls":24},"NonCoding",15.18,15.05,15.01,13.44,12.48,13.03]
["TC1500001423.rn.1",10.63,9.33,2.462,"up",2.19474123090941e-5,0.000389955732881968,null,null,"chr15","-",null,"Pseudogene",18907775,18908223,30,null,"NA","ENSRNOT00000065527","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:22874179:22874627:-1 gene:ENSRNOG00000042864 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",10.67,10.43,10.78,9.51,9.33,9.15]
["TC0400002339.rn.1",4.06,5.75,-3.227,"down",2.29278295694988e-5,0.000399878842823056,null,null,"chr4","-",null,"Pseudogene",25616779,25617178,30,null,"NA","ENSRNOT00000061202","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:25523947:25524346:-1 gene:ENSRNOG00000039863 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",4.34,4.04,3.81,5.62,5.99,5.65]
["TC0X00001407.rn.1",7.29,6.3,1.986,"up",2.3192570747945e-5,0.000402475670791761,"NONMMUG044582","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00000537.mm","Noncoding",4870830,4872498,30,null,"NA","MTA_TR0X00000537.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",7.18,7.39,7.29,6.13,6.36,6.42]
["TC0500002845.rn.1",5.92,6.75,-1.778,"down",2.32865861868876e-5,0.000403301384498928,"NONMMUG029403","Non-coding transcript identified by NONCODE: Antisense","chr5","-","MTA_TR0400009313.mm","Noncoding",76417702,76419436,30,null,"NA","MTA_TR0400009313.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",5.99,5.86,5.92,6.79,6.83,6.63]
["TC0100007203.rn.1",11.5,9.84,3.16,"up",2.3353405591926e-5,0.000403472990645698,"ENSMUSG00000099313","N/A, ribosomal protein L7A (Rpl7a) pseudogene","chr1","-","MTA_TR0900002962.mm","Pseudogene",222962791,222962889,30,null,"NA","MTA_TR0900002962.mm","MTA2Rn6","N/A, ribosomal protein L7A (Rpl7a) pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",11.57,11.45,11.47,9.7,9.9,9.93]
["TC0900000129.rn.1",8.39,9.75,-2.567,"down",2.33721084299649e-5,0.000403472990645698,null,null,"chr9","+",null,"Noncoding",12315914,12317121,30,null,"NA","NONRATT056087","NONCODE","Non-coding transcript identified by NONCODE","chr9",100,100,{"$nulls":24},"NonCoding",8.35,8.56,8.26,9.53,9.87,9.85]
["TC0400001784.rn.1",6.22,4.85,2.585,"up",2.33894019676598e-5,0.000403472990645698,"NONMMUG036584","Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0600004952.mm","Noncoding",157596782,157597998,30,null,"NA","MTA_TR0600004952.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",6.36,6.11,6.2,5.06,4.79,4.7]
["TC0200002650.rn.1",4.57,7.1,-5.776,"down",2.3813026209034e-5,0.000408347559997166,"LOC102550693","uncharacterized LOC102550693","chr2","-","mRNARGD7602684_1","Noncoding",25300170,25305297,30,null,"NA","mRNARGD7602684_1","Rat Genome Database","uncharacterized LOC102550693","chr2",100,100,{"$nulls":24},"NonCoding",4.51,4.7,4.5,6.56,7.04,7.69]
["TC0100005713.rn.1",7.61,5.54,4.199,"up",2.41927335754437e-5,0.000413566235231072,"NONMMUG038265","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR0700011953.mm","Noncoding",128251219,128254004,30,null,"NA","MTA_TR0700011953.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",7.35,7.4,8.08,5.29,5.55,5.79]
["TC0700003108.rn.1",8.92,7.17,3.364,"up",2.50257466563913e-5,0.0004192114225344,"NONMMUG014494","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004484.mm","Noncoding",90189042,90191481,30,null,"NA","MTA_TR1500004484.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",8.74,9.25,8.77,6.95,7.18,7.39]
["TC0200002823.rn.1",4.05,5.29,-2.362,"down",2.50719677715764e-5,0.000419304171897588,"XLOC_025019","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr2","-","TCONS_00064728","Noncoding",36962219,36967199,30,null,"NA","TCONS_00064728","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr2",100,100,{"$nulls":24},"NonCoding",4.05,4.16,3.95,5.48,5.08,5.32]
["TC1300000731.rn.1",7.47,5.4,4.199,"up",2.50795598757466e-5,0.000419304171897588,"LOC100911901","betaine aldehyde dehydrogenase-like","chr13","+","mRNARGD7521847_1","Noncoding",88456624,88457392,30,null,"NA","mRNARGD7521847_1","Rat Genome Database","betaine aldehyde dehydrogenase-like","chr13",100,100,{"$nulls":24},"NonCoding",7.3,7.34,7.77,5.44,5.36,5.41]
["TC0100006585.rn.1",12.85,11.51,2.532,"up",2.54156254782548e-5,0.000422605789363543,null,null,"chr1","-",null,"Pseudogene",194753304,194753623,30,null,"NA","ENSRNOT00000052036","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:201802553:201802872:-1 gene:ENSRNOG00000048512 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",13.09,12.55,12.91,11.66,11.55,11.31]
["TC0100006663.rn.1",12.85,11.51,2.532,"up",2.54156254782548e-5,0.000422605789363543,null,null,"chr1","-",null,"Pseudogene",198028937,198029256,30,null,"NA","ENSRNOT00000055639","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:205007697:205008016:-1 gene:ENSRNOG00000049563 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",13.09,12.55,12.91,11.66,11.55,11.31]
["TC0400002501.rn.1",7.09,5.27,3.531,"up",2.58788761272387e-5,0.000427727837494066,"NCBI_Gene:100862080","PREDICTED:  uncharacterized LOC100862080 (LOC100862080), miscRNA.","chr4","-","MTA_TR0600006313.mm","Noncoding",44355898,44360407,30,null,"NA","MTA_TR0600006313.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862080 (LOC100862080), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",7.29,6.83,7.14,5.33,5.38,5.11]
["TC1100001274.rn.1",6.33,6.92,-1.505,"down",2.61753607473325e-5,0.000431396766168798,"LOC102553097","uncharacterized LOC102553097","chr11","-","mRNARGD7637209_1","Noncoding",30205187,30212833,30,null,"NA","mRNARGD7637209_1","Rat Genome Database","uncharacterized LOC102553097","chr11",100,100,{"$nulls":24},"NonCoding",6.37,6.25,6.38,6.93,6.87,6.95]
["TC1400001316.rn.1",5.28,4.11,2.25,"up",2.65131708940201e-5,0.000434081330443,"LOC102555159","uncharacterized LOC102555159","chr14","-","mRNARGD7618434_1","Noncoding",6433124,6438635,30,null,"NA","mRNARGD7618434_1","Rat Genome Database","uncharacterized LOC102555159","chr14",100,100,{"$nulls":24},"NonCoding",5.23,5.2,5.42,4.38,3.9,4.04]
["TC0500001654.rn.1",4.89,5.77,-1.84,"down",2.74689018575099e-5,0.000443719698931534,"NONMMUG030960","Non-coding transcript identified by NONCODE: Antisense","chr5","+","MTA_TR0400005547.mm","Noncoding",152587897,152591248,30,null,"NA","MTA_TR0400005547.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",4.91,4.81,4.94,5.82,5.91,5.58]
["TC1400001462.rn.1",7.64,9.21,-2.969,"down",2.77670139096504e-5,0.000446796992052788,"NONMMUG033007","Non-coding transcript identified by NONCODE: Linc","chr14","-","MTA_TR0500003036.mm","Noncoding",16366623,16368666,30,null,"NA","MTA_TR0500003036.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",7.38,7.66,7.89,9,9.07,9.55]
["TC0400003418.rn.1",7.08,5.41,3.182,"up",2.86144947321019e-5,0.000453938253873372,"NONMMUG036103","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600009208.mm","Noncoding",129750962,129751697,30,null,"NA","MTA_TR0600009208.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",7,6.9,7.33,5.2,5.28,5.76]
["TC0900000362.rn.1",3.36,4.42,-2.085,"down",2.99240052413608e-5,0.000467715238867954,"LOC102552684","uncharacterized LOC102552684","chr9","+","mRNARGD7718475_1","Noncoding",29003622,29016106,30,null,"NA","mRNARGD7718475_1","Rat Genome Database","uncharacterized LOC102552684","chr9",100,100,{"$nulls":24},"NonCoding",3.25,3.5,3.33,4.17,4.54,4.56]
["TC1000001728.rn.1",7.97,10.09,-4.347,"down",3.00507823898543e-5,0.000468172323671892,null,null,"chr10","+",null,"Pseudogene",91752934,91753308,30,null,"NA","ENSRNOT00000033244","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:91519426:91519800:1 gene:ENSRNOG00000028427 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",7.92,7.77,8.23,9.99,10.3,9.99]
["TC1600000194.rn.1",5.62,7.04,-2.676,"down",3.00795906913601e-5,0.000468201227508617,"NONMMUG012686","Non-coding transcript identified by NONCODE: Linc","chr16","+","MTA_TR1400001371.mm","Noncoding",16932437,16933337,30,null,"NA","MTA_TR1400001371.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",5.61,5.76,5.48,6.98,7.23,6.91]
["TC1100000099.rn.1",8.81,6.82,3.972,"up",3.01840202769296e-5,0.000468459544154141,"NONMMUG016969","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003007.mm","Noncoding",15853423,15856737,30,null,"NA","MTA_TR1600003007.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",8.48,9.02,8.93,6.57,7.04,6.84]
["TC0200000761.rn.1",4.28,5.24,-1.945,"down",3.04988124682808e-5,0.000471347750343866,"kleeshaw","Unannotated AceView Transcript","chr2","+","kleeshaw.aSep08","Noncoding",91496069,91508197,40,null,"NA","kleeshaw.aSep08","Ace View","Unannotated AceView Transcript","chr2",100,100,{"$nulls":24},"NonCoding",4.27,4.22,4.34,5.05,5.4,5.26]
["TC1300000566.rn.1",7.82,5.84,3.945,"up",3.1289463107145e-5,0.000477198651127494,"LOC680254","hypothetical protein LOC680254","chr13","+","NR_027983","Noncoding",75060046,75066815,60,"13q22",680254,"NR_027983","RefSeq","Rattus norvegicus hypothetical protein LOC680254 (LOC680254), long non-coding RNA.","chr13",100,100,null,null,"NR_027983","Rn.204807","embryonic tissue| heart| kidney| metamorphosing embryo| adult",{"$nulls":19},"NonCoding",7.95,7.54,7.97,6.03,5.77,5.73]
["TC0200000756.rn.1",6.19,7.48,-2.445,"down",3.17227109384107e-5,0.00048231254834768,"gashee","Unannotated AceView Transcript","chr2","+","gashee.aSep08","Noncoding",89842953,89844052,30,null,"NA","gashee.aSep08","Ace View","Unannotated AceView Transcript","chr2",100,100,{"$nulls":24},"NonCoding",6.39,6.08,6.11,7.56,7.65,7.22]
["TC0100001496.rn.1",10.79,7.43,10.267,"up",3.21060811396062e-5,0.000485814229508797,"NCBI_Gene:100861649","PREDICTED:  uncharacterized LOC100861649, transcript variant 3 (LOC100861649), miscRNA.","chr1","+","MTA_TR0700003051.mm","Noncoding",101448187,101448815,30,null,"NA","MTA_TR0700003051.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861649, transcript variant 3 (LOC100861649), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",11.39,10.42,10.57,7.06,8.06,7.18]
["TC0100002123.rn.1",5.76,4.89,1.828,"up",3.27681992440807e-5,0.000492828042483919,"ENSMUSG00000085095","predicted gene 15635, Non-coding transcript identified by NONCODE: Antisense, Novel transcript","chr1","+","MTA_TR0700004869.mm","Noncoding",164626627,164632622,150,null,"NA","MTA_TR0700004869.mm","MTA2Rn6","predicted gene 15635, Non-coding transcript identified by NONCODE: Antisense, Novel transcript","chr1",100,100,{"$nulls":24},"NonCoding",5.82,5.69,5.76,4.86,5,4.81]
["TC0300004241.rn.1",5.33,7.94,-6.105,"down",3.30894390017432e-5,0.000495087549439519,"LOC102549386","uncharacterized LOC102549386","chr3","-","mRNARGD7644602_1","Noncoding",127732981,127748919,30,null,"NA","mRNARGD7644602_1","Rat Genome Database","uncharacterized LOC102549386","chr3",100,100,{"$nulls":24},"NonCoding",5.71,5.07,5.21,7.71,8.1,8.01]
["TC0700001405.rn.1",4.14,5.03,-1.853,"down",3.3188141451944e-5,0.00049538214480901,"LOC102554213","uncharacterized LOC102554213","chr7","+","mRNARGD7639904_1","Noncoding",119352671,119377067,80,null,"NA","mRNARGD7639904_1","Rat Genome Database","uncharacterized LOC102554213","chr7",100,100,{"$nulls":24},"NonCoding",4,4.28,4.15,5.14,4.96,4.98]
["TC0100002125.rn.1",6.4,4.62,3.434,"up",3.32839621045034e-5,0.000496288159414016,"NONMMUG038822","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr1","+","MTA_TR0700004874.mm","Noncoding",164679553,164690651,30,null,"NA","MTA_TR0700004874.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr1",100,100,{"$nulls":24},"NonCoding",6.16,6.25,6.79,4.81,4.76,4.3]
["TC0100001064.rn.1",3.36,4.13,-1.705,"down",3.35213644160871e-5,0.000497136543350526,"NONMMUG037453","Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR0700001319.mm","Noncoding",81949942,81951718,30,null,"NA","MTA_TR0700001319.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",3.5,3.31,3.27,4.09,4.16,4.14]
["TC1400000340.rn.1",3.89,5.42,-2.888,"down",3.38360562645522e-5,0.000500226496486414,"LOC102548557","uncharacterized LOC102548557","chr14","+","mRNARGD7549126_1","Noncoding",26242695,26273650,30,null,"NA","mRNARGD7549126_1","Rat Genome Database","uncharacterized LOC102548557","chr14",100,100,{"$nulls":24},"NonCoding",3.94,3.78,3.94,5.74,5.15,5.36]
["TC0200003326.rn.1",5.97,7.87,-3.732,"down",3.432660970908e-5,0.000505227884568627,null,null,"chr2","-",null,"Pseudogene",102301403,102301790,30,null,"NA","ENSRNOT00000059203","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:122039094:122039481:-1 gene:ENSRNOG00000038752 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",6.21,6.06,5.65,7.74,8.01,7.87]
["TC0200000896.rn.1",8.65,6.98,3.182,"up",3.61729752340511e-5,0.000522762689509735,"NONMMUG026226","Non-coding transcript identified by NONCODE: Antisense","chr2","+","MTA_TR0300000383.mm","Noncoding",113229567,113233578,30,null,"NA","MTA_TR0300000383.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",8.84,8.44,8.68,7.12,6.96,6.85]
["TC1200001003.rn.1",4.07,4.86,-1.729,"down",3.62537947609426e-5,0.000522879996059673,"blerlar","Unannotated AceView Transcript","chr12","-","blerlar.aSep08-unspliced","Noncoding",6905853,6909668,40,null,"NA","blerlar.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr12",100,100,{"$nulls":24},"NonCoding",3.99,4.13,4.08,5.03,4.72,4.83]
["TC0X00001262.rn.1",13.54,12.3,2.362,"up",3.69571777217308e-5,0.000529689054623916,"NONMMUG020752","Non-coding transcript identified by NONCODE: Antisense","chrX","+","MTA_TR1900000728.mm","Noncoding",153490316,153490521,30,null,"NA","MTA_TR1900000728.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chrX",100,100,{"$nulls":24},"NonCoding",13.61,13.39,13.61,12.51,12.27,12.11]
["TC0400002964.rn.1",10.43,8.99,2.713,"up",3.77707640243772e-5,0.00053707865936902,"RGD1564273","similar to 60S ribosomal protein L7a","chr4","-","mRNARGD6700294_1","Pseudogene",86950245,86951044,30,null,"NA","mRNARGD6700294_1","Rat Genome Database","similar to 60S ribosomal protein L7a","chr4",100,100,{"$nulls":24},"Pseudogene",10.57,10.4,10.31,9.02,8.81,9.13]
["TC1700000233.rn.1",8.08,11.86,-13.737,"down",3.84603696157885e-5,0.000542440969579503,"KnowTID_00002052","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17","+","MTA_TR1300005399.mm","Noncoding",13796274,13798295,30,null,"NA","MTA_TR1300005399.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",7.66,8.28,8.3,11.91,11.81,11.87]
["TC0200003519.rn.1",5.46,8.71,-9.514,"down",3.88449586245788e-5,0.000546819915938054,"LOC102556418","uncharacterized LOC102556418","chr2","-","mRNARGD7576448_1","Noncoding",123217080,123235175,40,null,"NA","mRNARGD7576448_1","Rat Genome Database","uncharacterized LOC102556418","chr2",100,100,{"$nulls":24},"NonCoding",5.52,5.42,5.43,8.54,8.84,8.76]
["TC1600000760.rn.1",11.58,10.09,2.809,"up",3.9563326787533e-5,0.000551126342924006,null,null,"chr16","+",null,"Pseudogene",66702080,66702334,30,null,"NA","ENSRNOT00000073206","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:66340531:66340785:1 gene:ENSRNOG00000047793 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",11.83,11.44,11.46,10.25,10.21,9.8]
["TC0300004136.rn.1",5.54,6.65,-2.158,"down",4.07332416493434e-5,0.000559385816737957,"NONMMUG024617","Non-coding transcript identified by NONCODE: Antisense","chr3","-","MTA_TR0200016274.mm","Noncoding",121624121,121627295,30,null,"NA","MTA_TR0200016274.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",5.6,5.44,5.58,6.36,6.71,6.88]
["TC0900002524.rn.1",5.78,4.48,2.462,"up",4.10704063401323e-5,0.000562201756134309,"NONMMUG001421","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR0100009075.mm","Noncoding",103146578,103151384,30,null,"NA","MTA_TR0100009075.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",5.63,5.78,5.94,4.16,4.61,4.67]
["TC1400001222.rn.1",9.12,10.21,-2.129,"down",4.14138973299481e-5,0.000565464854536332,"LOC100365289","rCG57257-like","chr14","-","mRNARGD6579827_1","Noncoding",1467666,1469982,30,null,"NA","mRNARGD6579827_1","Rat Genome Database","rCG57257-like","chr14",100,100,{"$nulls":24},"NonCoding",9.21,9.04,9.1,10.09,10.28,10.25]
["TC0100001389.rn.1",5.92,6.83,-1.879,"down",4.24726926557991e-5,0.000573265846250106,"LOC308536","similar to phosphoglycerate kinase 1","chr1","+","ENSRNOT00000019353","Pseudogene",97928724,97930243,30,"1q22",308536,"ENSRNOT00000019353","ENSEMBL","ensembl:known chromosome:Rnor_5.0:1:99010778:99012014:1 gene:ENSRNOG00000014406 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,null,null,"ENSRNOT00000019353","Rn.233679",{"$nulls":20},"Pseudogene",5.94,5.89,5.92,6.9,6.95,6.64]
["TC0300003814.rn.1",6.06,6.95,-1.853,"down",4.32665832860689e-5,0.000581271321161874,"NONMMUG024078","Non-coding transcript identified by NONCODE: Antisense","chr3","-","MTA_TR0200015085.mm","Noncoding",96019021,96025257,50,null,"NA","MTA_TR0200015085.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",6.1,5.97,6.1,6.79,7.16,6.89]
["TC0100007401.rn.1",3.93,3.36,1.485,"up",4.35032438053466e-5,0.000583097876653299,"NONMMUG020982","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR1900004411.mm","Noncoding",239210407,239211797,30,null,"NA","MTA_TR1900004411.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",3.93,3.95,3.9,3.35,3.43,3.29]
["TC1300001924.rn.1",3.82,3.3,1.434,"up",4.37945789042705e-5,0.000583266825903432,"NONMMUG002443","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr13","-","MTA_TR0100011378.mm","Noncoding",89961623,89962458,30,null,"NA","MTA_TR0100011378.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr13",100,100,{"$nulls":24},"NonCoding",3.75,3.85,3.87,3.32,3.24,3.35]
["TC0700002576.rn.1",4.23,6.22,-3.972,"down",4.47380508747931e-5,0.00059008707801521,"LOC102551540","uncharacterized LOC102551540","chr7","-","mRNARGD7496465_1","Noncoding",39048502,39201052,30,null,"NA","mRNARGD7496465_1","Rat Genome Database","uncharacterized LOC102551540","chr7",100,100,{"$nulls":24},"NonCoding",4.43,4.27,3.99,6.4,6.01,6.25]
["TC0600001732.rn.1",13.88,11.74,4.408,"up",4.53006510590422e-5,0.00059328072185242,"LOC679604","similar to heterogeneous nuclear ribonucleoprotein F","chr6","-","LOC679604.aSep08-unspliced","Pseudogene",1507605,1509764,70,null,"NA","LOC679604.aSep08-unspliced","Ace View","similar to heterogeneous nuclear ribonucleoprotein F","chr6",100,100,{"$nulls":24},"Pseudogene",13.88,13.69,14.07,11.74,11.87,11.62]
["TC1400001353.rn.1",6.34,3.78,5.897,"up",4.54364242783203e-5,0.00059328072185242,"NONMMUG033148","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","-","MTA_TR0500003345.mm","Noncoding",8586924,8590673,30,null,"NA","MTA_TR0500003345.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",6,6.11,6.92,3.87,3.3,4.17]
["TC0300000149.rn.1",3.7,4.2,-1.414,"down",4.59288813998242e-5,0.000597625916701383,"LOC102548990","uncharacterized LOC102548990","chr3","+","mRNARGD7550652_1","Noncoding",6113865,6117684,30,null,"NA","mRNARGD7550652_1","Rat Genome Database","uncharacterized LOC102548990","chr3",100,100,{"$nulls":24},"NonCoding",3.76,3.65,3.68,4.15,4.28,4.18]
["TC0500000453.rn.1",4.41,5.57,-2.235,"down",4.60784368253109e-5,0.000598227597976439,"LOC102551072","uncharacterized LOC102551072","chr5","+","mRNARGD7515752_1","Noncoding",52967361,53028084,30,null,"NA","mRNARGD7515752_1","Rat Genome Database","uncharacterized LOC102551072","chr5",100,100,{"$nulls":24},"NonCoding",4.69,4.39,4.15,5.58,5.49,5.63]
["TC0600001368.rn.1",9.69,8.38,2.479,"up",4.7604233817219e-5,0.000612543070843638,"LOC690089","LLP homolog, long-term synaptic facilitation (Aplysia)","chr6","+","ENSRNOT00000007522","Pseudogene",125863982,125865100,30,"7q22",299818,"ENSRNOT00000007522","ENSEMBL","ensembl:known chromosome:Rnor_5.0:6:135075500:135076578:1 gene:ENSRNOG00000005718 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,"ENSRNOT00000007522","B0BN98","ENSRNOT00000007522","Rn.234533","eye| small intestine| adult",{"$nulls":8},"ENSRNOT00000007522","GO:0044822","poly(A) RNA binding","not recorded",{"$nulls":7},"Pseudogene",9.74,9.57,9.76,8.3,8.48,8.35]
["TC1000001101.rn.1",7.04,4.12,7.568,"up",4.85983265684934e-5,0.000618462659942343,"NONMMUG006795","Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1100012212.mm","Noncoding",63553405,63561397,30,null,"NA","MTA_TR1100012212.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",6.62,6.88,7.62,4.19,3.97,4.21]
["TC0200001387.rn.1",5.7,7.02,-2.497,"down",4.95038949060563e-5,0.000625178438709755,"Gm20754","predicted gene, 20754","chr2","+","NR_040557","Noncoding",170473191,171002631,30,"3 E3|3",626082,"NR_040557","RefSeq","Mus musculus predicted gene, 20754 (Gm20754), long non-coding RNA.","chr2",100,100,null,null,"NR_040557","Mm.428099","brain| eye| adult",{"$nulls":19},"NonCoding",5.73,5.71,5.65,6.93,6.86,7.28]
["TC1200000696.rn.1",6.33,11.71,-41.643,"down",4.98293315307291e-5,0.000626896885729,null,null,"chr12","+",null,"Noncoding",42337338,42337925,30,null,"NA","NONRATT015090","NONCODE","Non-coding transcript identified by NONCODE","chr12",100,100,{"$nulls":24},"NonCoding",6.18,6.13,6.67,11.84,11.93,11.36]
["TC0700002244.rn.1",13,13.61,-1.526,"down",5.00706269343326e-5,0.000627544632378277,"LOC691186","similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)","chr7","-","mRNARGD6604798_1","Pseudogene",14662641,14663752,30,null,"NA","mRNARGD6604798_1","Rat Genome Database","similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)","chr7",100,100,{"$nulls":24},"Pseudogene",13.08,12.89,13.03,13.66,13.68,13.5]
["TC1800000967.rn.1",6.17,7.35,-2.266,"down",5.02938774201029e-5,0.000628590126702508,null,null,"chr18","+",null,"Pseudogene",83552632,83553925,30,null,"NA","ENSRNOT00000075115","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:82613983:82615276:1 gene:ENSRNOG00000051009 gene_biotype:pseudogene transcript_biotype:pseudogene","chr18",100,100,{"$nulls":24},"Pseudogene",6.26,6.07,6.17,7.28,7.19,7.58]
["TC1700000232.rn.1",8.25,12.03,-13.737,"down",5.05017776250829e-5,0.000629767680635546,"NONMMUG010979","Non-coding transcript identified by NONCODE: Linc","chr17","+","MTA_TR1300005401.mm","Noncoding",13792042,13793218,30,null,"NA","MTA_TR1300005401.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",8.14,8.13,8.49,12.25,11.87,11.98]
["TC0800002243.rn.1",12.38,11.63,1.682,"up",5.34207314908557e-5,0.000653479057234416,null,null,"chr8","-",null,"Noncoding",38093823,38094167,30,null,"NA","NONRATT054724","NONCODE","Non-coding transcript identified by NONCODE","chr8",100,100,{"$nulls":24},"NonCoding",12.45,12.3,12.39,11.77,11.51,11.61]
["TC0500002113.rn.1",4.68,5.22,-1.454,"down",5.34787940554909e-5,0.000653479057234416,"NONMMUG000180","Non-coding transcript identified by NONCODE: Antisense, Non-coding transcript identified by Luo, et al.","chr5","-","MTA_TR0100000326.mm","Noncoding",1506620,1509046,30,null,"NA","MTA_TR0100000326.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense, Non-coding transcript identified by Luo, et al.","chr5",100,100,{"$nulls":24},"NonCoding",4.67,4.69,4.69,5.14,5.3,5.22]
["TC0300004900.rn.1",11.45,10.56,1.853,"up",5.34941695577307e-5,0.000653479057234416,"Ribosomal_S12.1","Unannotated AceView Transcript","chr3","-","Ribosomal_S12.1.aSep08-unspliced","Pseudogene",167959286,167959792,30,null,"NA","Ribosomal_S12.1.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr3",100,100,{"$nulls":24},"Pseudogene",11.65,11.35,11.36,10.67,10.61,10.39]
["TC1200001437.rn.1",7.86,9.73,-3.655,"down",5.55917076033068e-5,0.000669683462397394,"NONMMUG033901","Non-coding transcript identified by NONCODE: Linc","chr12","-","MTA_TR0500005309.mm","Noncoding",30218829,30220660,30,null,"NA","MTA_TR0500005309.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr12",100,100,{"$nulls":24},"NonCoding",7.92,7.68,7.97,9.67,9.8,9.71]
["TC0100005157.rn.1",4.23,5.38,-2.219,"down",5.71820193811649e-5,0.000679417823987836,"ENSMUSG00000091271","predicted gene 17104, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr1","-","MTA_TR0700009916.mm","Noncoding",89019004,89019642,30,null,"NA","MTA_TR0700009916.mm","MTA2Rn6","predicted gene 17104, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr1",100,100,{"$nulls":24},"NonCoding",4.26,4.1,4.33,5.27,5.64,5.23]
["TC1400001017.rn.1",9.54,10.79,-2.378,"down",5.75642630406311e-5,0.000680317498244499,"LOC100909601","uncharacterized LOC100909601","chr14","+","mRNARGD7751566_1","Noncoding",94325157,94341761,40,null,"NA","mRNARGD7751566_1","Rat Genome Database","uncharacterized LOC100909601","chr14",100,100,{"$nulls":24},"NonCoding",9.41,9.83,9.38,10.56,10.93,10.87]
["TC0500001750.rn.1",10.2,8.76,2.713,"up",5.86796985287788e-5,0.000687803672836313,null,null,"chr5","+",null,"Pseudogene",156897687,156898170,30,null,"NA","ENSRNOT00000036895","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:160646597:160647080:1 gene:ENSRNOG00000027882 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",10.15,10.07,10.39,8.93,8.51,8.83]
["TC0100005608.rn.1",4.83,5.58,-1.682,"down",5.87424178254136e-5,0.000688074538128968,"LOC102555710","uncharacterized LOC102555710","chr1","-","mRNARGD7580678_1","Noncoding",121184981,121189221,30,null,"NA","mRNARGD7580678_1","Rat Genome Database","uncharacterized LOC102555710","chr1",100,100,{"$nulls":24},"NonCoding",4.95,4.8,4.73,5.69,5.58,5.47]
["TC0200000673.rn.1",7.01,5.92,2.129,"up",5.91904468527681e-5,0.000688786860914139,"NONMMUG014181","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR1500000501.mm","Noncoding",78209328,78209701,30,null,"NA","MTA_TR1500000501.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.85,7.01,7.17,5.77,5.84,6.16]
["TC0100006457.rn.1",5.03,4.15,1.84,"up",6.04828548908116e-5,0.000694538744359691,"NONMMUG039110","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR0700014029.mm","Noncoding",184075839,184079535,30,null,"NA","MTA_TR0700014029.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",5.21,4.85,5.03,3.98,4.22,4.25]
["TC1600000244.rn.1",13.43,14.52,-2.129,"down",6.05181575980419e-5,0.000694538744359691,null,null,"chr16","+",null,"Pseudogene",19622105,19622419,30,null,"NA","ENSRNOT00000060549","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:19479724:19480038:1 gene:ENSRNOG00000039505 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",13.36,13.48,13.45,14.39,14.51,14.66]
["TC0800000021.rn.1",9.38,7.93,2.732,"up",6.07972595411213e-5,0.000696182726096782,null,null,"chr8","+",null,"Pseudogene",3689799,3690544,30,null,"NA","ENSRNOT00000016662","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:3706963:3707708:1 gene:ENSRNOG00000012492 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",9.45,9.4,9.28,7.94,8.29,7.55]
["TC0100005442.rn.1",4.53,3.85,1.602,"up",6.13321726274454e-5,0.000698985462962387,"NONMMUG038039","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR0700011162.mm","Noncoding",102989222,102990304,30,null,"NA","MTA_TR0700011162.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.64,4.45,4.51,3.78,3.93,3.83]
["TC0800001534.rn.1",5.04,5.97,-1.905,"down",6.16127511372513e-5,0.000701359829623324,"ENSMUSG00000097227","RIKEN cDNA F630040L22 gene, Non-coding transcript identified by NONCODE: Antisense","chr8","+","MTA_TR0900004455.mm","Noncoding",116881910,116895803,30,null,"NA","MTA_TR0900004455.mm","MTA2Rn6","RIKEN cDNA F630040L22 gene, Non-coding transcript identified by NONCODE: Antisense","chr8",100,100,{"$nulls":24},"NonCoding",5.17,5.04,4.9,5.77,6.06,6.08]
["TC1100001324.rn.1",4.35,5.12,-1.705,"down",6.16901136610231e-5,0.000701780592276118,"swalor","Unannotated AceView Transcript","chr11","-","swalor.aSep08-unspliced","Noncoding",32306609,32308404,70,null,"NA","swalor.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr11",100,100,{"$nulls":24},"NonCoding",4.32,4.31,4.41,5.09,5.25,5.01]
["TC0700002102.rn.1",5.41,6.53,-2.173,"down",6.35724525457322e-5,0.000715231265007716,"NONMMUG004182","Non-coding transcript identified by NONCODE: Antisense","chr7","-","MTA_TR1000003024.mm","Noncoding",11107201,11119941,60,null,"NA","MTA_TR1000003024.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",5.5,5.28,5.44,6.45,6.52,6.61]
["TC0200003914.rn.1",5.02,6.05,-2.042,"down",6.67154056604008e-5,0.000742893148542835,"ENSMUSG00000098204","predicted gene, 26984, Non-coding transcript identified by NONCODE: Sense No Exonic, novel transcript, intronic to Rxfp1","chr2","-","MTA_TR0300007050.mm","Noncoding",178439078,178442531,30,null,"NA","MTA_TR0300007050.mm","MTA2Rn6","predicted gene, 26984, Non-coding transcript identified by NONCODE: Sense No Exonic, novel transcript, intronic to Rxfp1","chr2",100,100,{"$nulls":24},"NonCoding",4.82,5.15,5.09,6.13,6.02,5.99]
["TC0100002958.rn.1",8.88,7.45,2.694,"up",6.71693273512315e-5,0.000744786965245744,"ENSMUSG00000082621","ribosomal protein L7A, pseudogene 13, ribosomal protein L7a (Rpl7a) pseudogene","chr1","+","MTA_TR0X00001638.mm","Pseudogene",217687646,217688209,30,null,"NA","MTA_TR0X00001638.mm","MTA2Rn6","ribosomal protein L7A, pseudogene 13, ribosomal protein L7a (Rpl7a) pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",8.91,8.96,8.76,7.39,7.27,7.69]
["TC0300004032.rn.1",13.7,13.17,1.444,"up",6.75660507577842e-5,0.000746622007357928,null,null,"chr3","-",null,"Pseudogene",113412173,113412652,30,null,"NA","ENSRNOT00000033301","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:119952291:119952770:-1 gene:ENSRNOG00000028666 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",13.73,13.64,13.74,13.18,13.15,13.18]
["TC0700003563.rn.1",5.84,7.22,-2.603,"down",6.94965008861382e-5,0.000756892960452048,"NONMMUG015053","Non-coding transcript identified by NONCODE: Antisense","chr7","-","MTA_TR1500005996.mm","Noncoding",123279187,123280796,30,null,"NA","MTA_TR1500005996.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",5.67,5.73,6.11,7.12,7.11,7.42]
["TC1100001175.rn.1",14.71,12.56,4.438,"up",6.9562454705635e-5,0.000757006655837754,"LOC102548676","uncharacterized LOC102548676","chr11","-","mRNARGD7740113_1","Noncoding",18790948,18806054,12,null,"NA","mRNARGD7740113_1","Rat Genome Database","uncharacterized LOC102548676","chr11",100,100,{"$nulls":24},"NonCoding",15.04,14.87,14.22,12.69,12.48,12.5]
["TC0200002480.rn.1",14,12.97,2.042,"up",6.96012413965829e-5,0.000757006655837754,null,null,"chr2","-",null,"Pseudogene",2141699,2142251,30,null,"NA","ENSRNOT00000051340","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:2063024:2063575:-1 gene:ENSRNOG00000048631 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",13.97,14.17,13.87,12.97,12.9,13.04]
["TC1600000203.rn.1",5.65,4.54,2.158,"up",6.96388599406327e-5,0.000757006655837754,"KnowTID_00002452","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16","+","MTA_TR1400005605.mm","Noncoding",17602525,17608104,30,null,"NA","MTA_TR1400005605.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",5.49,5.74,5.72,4.65,4.41,4.55]
["TC0200000495.rn.1",6.01,7.4,-2.621,"down",6.97817600941217e-5,0.000757467346074409,"NONMMUG013960","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1500000066.mm","Noncoding",54945234,54946875,30,null,"NA","MTA_TR1500000066.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",5.95,5.9,6.17,7.36,7.47,7.37]
["TC0300003133.rn.1",4.84,6.4,-2.949,"down",7.10062097292114e-5,0.000763745429848998,"NONMMUG023025","Non-coding transcript identified by NONCODE: Antisense","chr3","-","MTA_TR0200012695.mm","Noncoding",41016253,41020615,30,null,"NA","MTA_TR0200012695.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",4.95,4.71,4.87,6.43,6.45,6.33]
["TC1900001457.rn.1",6.44,4.04,5.278,"up",7.11999599184557e-5,0.00076494237574265,"NONMMUG041544","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19","-","MTA_TR0800004252.mm","Noncoding",42961909,42963719,30,null,"NA","MTA_TR0800004252.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19",100,100,{"$nulls":24},"NonCoding",5.83,6.43,7.06,3.82,4.22,4.09]
["TC0900001989.rn.1",5.77,4.9,1.828,"up",7.12495978326871e-5,0.00076494237574265,"NONMMUG000635","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR0100007549.mm","Noncoding",61325026,61326406,30,null,"NA","MTA_TR0100007549.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",5.95,5.61,5.75,4.86,4.77,5.06]
["TC1100000092.rn.1",5.34,7.1,-3.387,"down",7.18566767247529e-5,0.000769557540928288,"LOC102548078","uncharacterized LOC102548078","chr11","+","mRNARGD7690083_1","Noncoding",15376470,15394047,30,null,"NA","mRNARGD7690083_1","Rat Genome Database","uncharacterized LOC102548078","chr11",100,100,{"$nulls":24},"NonCoding",5.23,5.64,5.14,7.13,7.22,6.94]
["TC1500002078.rn.1",6.87,5.06,3.506,"up",7.29706300860106e-5,0.000775748356930288,"LOC102552389","uncharacterized LOC102552389","chr15","-","mRNARGD7699266_1","Noncoding",57879148,57883328,70,null,"NA","mRNARGD7699266_1","Rat Genome Database","uncharacterized LOC102552389","chr15",100,100,{"$nulls":24},"NonCoding",6.77,6.8,7.03,4.76,5.17,5.26]
["TC0600000531.rn.1",12.35,11.69,1.58,"up",7.62238183571478e-5,0.000800534430883927,null,null,"chr6","+",null,"Pseudogene",47685863,47686343,30,null,"NA","ENSRNOT00000010875","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:56386872:56387352:1 gene:ENSRNOG00000008228 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",12.49,12.2,12.35,11.67,11.76,11.65]
["TC1300000705.rn.1",7.62,5.76,3.63,"up",7.6437293607032e-5,0.000801323009805524,"LOC685495","osteoclast-stimulating factor 1-like","chr13","+","ENSRNOT00000071204","Pseudogene",85624448,85625722,30,null,100910652,"ENSRNOT00000071204","ENSEMBL","ensembl:known chromosome:Rnor_5.0:13:90267313:90267953:1 gene:ENSRNOG00000047428 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,null,null,"ENSRNOT00000071204","Rn.203230","colon| dorsal root ganglion| lung| adult",{"$nulls":19},"Pseudogene",7.96,7.52,7.39,5.34,6.15,5.8]
["TC0300000502.rn.1",6.55,4.09,5.502,"up",7.6947412227467e-5,0.000804728174475213,"NONMMUG022846","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002650.mm","Noncoding",28870382,28871957,30,null,"NA","MTA_TR0200002650.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",6.34,6.28,7.03,3.9,4.13,4.25]
["TC0300002868.rn.1",9.93,8.52,2.657,"up",7.70665214640029e-5,0.000805004536591217,"LOC499778","similar to 60S ribosomal protein L7a","chr3","-","LOC499778.aSep08-unspliced","Pseudogene",11298717,11299518,30,null,"NA","LOC499778.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7a","chr3",100,100,{"$nulls":24},"Pseudogene",9.96,10,9.83,8.32,8.5,8.73]
["TC0300000702.rn.1",3.64,4.74,-2.144,"down",7.77715322004038e-5,0.000808963644223482,"LOC102553450","uncharacterized LOC102553450","chr3","+","mRNARGD7636927_1","Noncoding",51480394,51483455,30,null,"NA","mRNARGD7636927_1","Rat Genome Database","uncharacterized LOC102553450","chr3",100,100,{"$nulls":24},"NonCoding",3.53,3.77,3.62,4.5,5.03,4.69]
["TC0700003212.rn.1",5.88,6.86,-1.972,"down",7.855981400277e-5,0.000813752253453857,"jawsa","Unannotated AceView Transcript","chr7","-","jawsa.aSep08","Noncoding",99604948,99608957,60,null,"NA","jawsa.aSep08","Ace View","Unannotated AceView Transcript","chr7",100,100,{"$nulls":24},"NonCoding",5.87,6.16,5.62,6.95,6.81,6.83]
["TC0300003641.rn.1",4.55,5.52,-1.959,"down",7.86611823502372e-5,0.000813831684696826,"NONMMUG023737","Non-coding transcript identified by NONCODE: Antisense","chr3","-","MTA_TR0200014335.mm","Noncoding",79716520,79717816,30,null,"NA","MTA_TR0200014335.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",4.51,4.57,4.57,5.28,5.8,5.48]
["TC1000000168.rn.1",4.92,3.95,1.959,"up",7.96303441353193e-5,0.000819514287024856,"LOC102551940","uncharacterized LOC102551940","chr10","+","mRNARGD7739851_1","Noncoding",12012793,12020119,30,null,"NA","mRNARGD7739851_1","Rat Genome Database","uncharacterized LOC102551940","chr10",100,100,{"$nulls":24},"NonCoding",4.9,4.73,5.13,3.86,4.13,3.85]
["TC0700003768.rn.1",3.77,4.59,-1.765,"down",8.05366903566889e-5,0.000823674964725072,"LOC102546506","uncharacterized LOC102546506","chr7","-","mRNARGD7734559_1","Noncoding",136099139,136101917,60,null,"NA","mRNARGD7734559_1","Rat Genome Database","uncharacterized LOC102546506","chr7",100,100,{"$nulls":24},"NonCoding",3.76,3.93,3.63,4.46,4.62,4.69]
["TC0300004259.rn.1",3.73,4.43,-1.625,"down",8.05609213671002e-5,0.000823674964725072,"LOC102547365","uncharacterized LOC102547365","chr3","-","mRNARGD7535988_1","Noncoding",129736409,129751912,30,null,"NA","mRNARGD7535988_1","Rat Genome Database","uncharacterized LOC102547365","chr3",100,100,{"$nulls":24},"NonCoding",3.57,3.74,3.88,4.49,4.41,4.38]
["TC1000003377.rn.1",11.42,9.74,3.204,"up",8.12844674331822e-5,0.000828634086726413,null,null,"chr10","-",null,"Pseudogene",67299617,67300113,30,null,"NA","ENSRNOT00000048189","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:66960385:66960881:-1 gene:ENSRNOG00000032087 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",11.53,11.15,11.58,10.12,9.57,9.53]
["TC0900001241.rn.1",5.66,8.52,-7.26,"down",8.23241399238084e-5,0.00083187525293059,"KnowTID_00003515","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr9","+","MTA_TR1700004000.mm","Noncoding",110333634,110336165,30,null,"NA","MTA_TR1700004000.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",5.73,5.71,5.54,8.14,8.66,8.77]
["TC1700000300.rn.1",4.48,5.1,-1.537,"down",8.40388794890895e-5,0.00083898814689941,"LOC102554492","uncharacterized LOC102554492","chr17","+","mRNARGD7623640_1","Noncoding",16748013,16770429,100,null,"NA","mRNARGD7623640_1","Rat Genome Database","uncharacterized LOC102554492","chr17",100,100,{"$nulls":24},"NonCoding",4.52,4.56,4.36,5.07,5.06,5.16]
["TC0X00000838.rn.1",5.13,6.12,-1.986,"down",8.43949148487201e-5,0.000842058624834645,null,null,"chrX","+",null,"Noncoding",97455440,97456095,30,null,"NA","NONRATT059019","NONCODE","Non-coding transcript identified by NONCODE","chrX",100,100,{"$nulls":24},"NonCoding",5.07,5.1,5.22,5.91,6.11,6.35]
["TC1500001153.rn.1",3.46,4.17,-1.636,"down",8.61278454134197e-5,0.000853038202263575,"NONMMUG013840","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15","+","MTA_TR1400004077.mm","Noncoding",105131673,105134129,30,null,"NA","MTA_TR1400004077.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15",100,100,{"$nulls":24},"NonCoding",3.51,3.4,3.46,3.97,4.23,4.3]
["TC0100001791.rn.1",4.62,5.73,-2.158,"down",8.66012719170507e-5,0.000854552045187311,"KnowTID_00006570","Non-coding transcript identified by Luo, et al.","chr1","+","MTA_TR0700003922.mm","Noncoding",136075768,136077421,30,null,"NA","MTA_TR0700003922.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al.","chr1",100,100,{"$nulls":24},"NonCoding",4.48,4.79,4.58,5.71,5.66,5.82]
["TC0500000319.rn.1",4.09,4.87,-1.717,"down",8.7570478686481e-5,0.000861133839935128,"NONMMUG028677","Non-coding transcript identified by NONCODE: Antisense","chr5","+","MTA_TR0400000585.mm","Noncoding",36682015,36682442,30,null,"NA","MTA_TR0400000585.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",4.14,3.97,4.16,4.86,5.05,4.69]
["TC0800000326.rn.1",4.4,5.83,-2.694,"down",8.84939288490884e-5,0.000866532152219569,"LOC102550927","uncharacterized LOC102550927","chr8","+","mRNARGD7568897_1","Noncoding",32957011,32960212,30,null,"NA","mRNARGD7568897_1","Rat Genome Database","uncharacterized LOC102550927","chr8",100,100,{"$nulls":24},"NonCoding",4.51,4.28,4.4,5.73,5.47,6.29]
["TC1200000359.rn.1",13.06,11.15,3.758,"up",8.93470948201182e-5,0.000872918101304991,"LOC363897","similar to Ras-related protein Rap-1b precursor (GTP-binding protein smg p21B)","chr12","+","LOC363897.aSep08-unspliced","Pseudogene",21893938,21895308,40,null,"NA","LOC363897.aSep08-unspliced","Ace View","similar to Ras-related protein Rap-1b precursor (GTP-binding protein smg p21B)","chr12",100,100,{"$nulls":24},"Pseudogene",13.12,13.11,12.96,11.08,11.21,11.15]
["TC0200000416.rn.1",6.89,5.74,2.219,"up",8.98664499600941e-5,0.000875039294986992,"NCBI_Gene:100861641","PREDICTED:  uncharacterized LOC100861641 (LOC100861641), miscRNA.","chr2","+","MTA_TR1300003546.mm","Noncoding",45438536,45455340,30,null,"NA","MTA_TR1300003546.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861641 (LOC100861641), miscRNA.","chr2",100,100,{"$nulls":24},"NonCoding",7.06,6.71,6.89,5.65,5.78,5.79]
["TC0100001230.rn.1",5.41,6.74,-2.514,"down",9.07973222991082e-5,0.000879665524627891,"KnowTID_00006521","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR0700001958.mm","Noncoding",88597456,88598002,30,null,"NA","MTA_TR0700001958.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.21,5.36,5.67,6.81,6.76,6.64]
["TC0200001347.rn.1",7.24,5.11,4.377,"up",9.12706507079594e-5,0.000881792254420446,"NCBI_Gene:100861992","PREDICTED:  uncharacterized LOC100861992 (LOC100861992), miscRNA.","chr2","+","MTA_TR0300001595.mm","Noncoding",164650642,164656883,30,null,"NA","MTA_TR0300001595.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861992 (LOC100861992), miscRNA.","chr2",100,100,{"$nulls":24},"NonCoding",7.61,7.19,6.92,5.25,5.02,5.07]
["TC1000002452.rn.1",6.84,5.56,2.428,"up",9.24884594898536e-5,0.000891288420002701,"LOC685658","similar to 60S ribosomal protein L3 (L4)","chr10","-","LOC685658.aSep08-unspliced","Pseudogene",15448335,15449858,50,null,"NA","LOC685658.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L3 (L4)","chr10",100,100,{"$nulls":24},"Pseudogene",6.91,7.03,6.59,5.53,5.73,5.41]
["TC1200001729.rn.1",3.8,4.82,-2.028,"down",9.29614171583008e-5,0.000894128284030447,"ENSMUSG00000085376","predicted gene 14508, Non-coding transcript identified by NONCODE: Antisense, putative novel transcript","chr12","-","MTA_TR0500004380.mm","Noncoding",46324432,46330839,30,null,"NA","MTA_TR0500004380.mm","MTA2Rn6","predicted gene 14508, Non-coding transcript identified by NONCODE: Antisense, putative novel transcript","chr12",100,100,{"$nulls":24},"NonCoding",3.77,3.68,3.95,4.97,4.83,4.65]
["TC0400002518.rn.1",7.89,4.56,10.056,"up",9.32820481837115e-5,0.000895744864012854,"LOC102551678","uncharacterized LOC102551678","chr4","-","mRNARGD7543258_1","Noncoding",46664696,46680259,3,null,"NA","mRNARGD7543258_1","Rat Genome Database","uncharacterized LOC102551678","chr4",100,100,{"$nulls":24},"NonCoding",7.99,8.05,7.64,5.71,3.92,4.06]
["TC0900000945.rn.1",4.17,5.35,-2.266,"down",9.58565616094334e-5,0.000907730142475647,"LOC102551060","uncharacterized LOC102551060","chr9","+","mRNARGD7521512_1","Noncoding",83260864,83278142,40,null,"NA","mRNARGD7521512_1","Rat Genome Database","uncharacterized LOC102551060","chr9",100,100,{"$nulls":24},"NonCoding",4.33,4.04,4.13,5.07,5.68,5.29]
["TC1900000826.rn.1",5.77,7.12,-2.549,"down",9.61338881284485e-5,0.000909554341328583,"NONMMUG041900","Non-coding transcript identified by NONCODE: Antisense","chr19","+","MTA_TR0800005088.mm","Noncoding",56678572,56682861,30,null,"NA","MTA_TR0800005088.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr19",100,100,{"$nulls":24},"NonCoding",5.78,5.85,5.67,6.94,7.25,7.17]
["TC1000003240.rn.1",12.91,12.22,1.613,"up",9.98659544902444e-5,0.000929175948286039,null,null,"chr10","-",null,"Pseudogene",62200611,62200900,30,null,"NA","ENSRNOT00000041305","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:61913711:61914000:-1 gene:ENSRNOG00000033278 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",13.03,12.88,12.83,12.33,12.29,12.03]
["TC1400002333.rn.1",4.18,5.04,-1.815,"down",0.000100421560521273,0.000933845250436313,"LOC100909672","uncharacterized LOC100909672","chr14","-","mRNARGD7611808_1","Noncoding",105822145,105868959,80,null,"NA","mRNARGD7611808_1","Rat Genome Database","uncharacterized LOC100909672","chr14",100,100,{"$nulls":24},"NonCoding",4.26,4.14,4.13,5.04,4.88,5.21]
["TC1500001054.rn.1",12.91,8.14,27.284,"up",0.000101225101298181,0.000937092246493549,"LOC102553928","uncharacterized LOC102553928","chr15","+","mRNARGD7501056_1","Noncoding",92067136,92078490,30,null,"NA","mRNARGD7501056_1","Rat Genome Database","uncharacterized LOC102553928","chr15",100,100,{"$nulls":24},"NonCoding",12.36,13.76,12.61,8.34,7.7,8.39]
["TC0700000162.rn.1",3.81,4.52,-1.636,"down",0.000101788518980565,0.000939240343443012,"NONMMUG004165","Non-coding transcript identified by NONCODE: Antisense","chr7","+","MTA_TR1000008067.mm","Noncoding",11323989,11326971,30,null,"NA","MTA_TR1000008067.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",3.92,3.86,3.65,4.57,4.57,4.43]
["TC0300000580.rn.1",6.15,7.86,-3.272,"down",0.000101812766490311,0.000939240343443012,"NONMMUG022978","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200002819.mm","Noncoding",37947601,37957636,100,null,"NA","MTA_TR0200002819.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",6.24,6.14,6.07,7.62,7.92,8.05]
["TC0400000378.rn.1",11.69,9.87,3.531,"up",0.000103113669903157,0.000946216354932773,"LOC102548177","uncharacterized LOC102548177","chr4","+","mRNARGD7641226_1","Noncoding",38882864,38887286,30,null,"NA","mRNARGD7641226_1","Rat Genome Database","uncharacterized LOC102548177","chr4",100,100,{"$nulls":24},"NonCoding",11.68,11.4,12,10.19,9.73,9.69]
["TC0100002162.rn.1",6.77,5.98,1.729,"up",0.00010355601523523,0.000946774495079569,"NONMMUG038862","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR0700004999.mm","Noncoding",166226890,166228879,30,null,"NA","MTA_TR0700004999.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",6.56,6.85,6.89,5.95,5.99,5.99]
["TC1500000523.rn.1",5.58,4.43,2.219,"up",0.000104624160448546,0.000951532089608216,"LOC102552386","uncharacterized LOC102552386","chr15","+","mRNARGD7591155_1","Noncoding",34477460,34479957,40,null,"NA","mRNARGD7591155_1","Rat Genome Database","uncharacterized LOC102552386","chr15",100,100,{"$nulls":24},"NonCoding",5.44,5.68,5.62,4.52,4.44,4.34]
["TC1500001896.rn.1",10.86,9.4,2.751,"up",0.000105199092186656,0.000953773440095397,null,null,"chr15","-",null,"Pseudogene",45966507,45966915,30,null,"NA","ENSRNOT00000013307","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:49732499:49732907:-1 gene:ENSRNOG00000010026 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",11.18,10.79,10.61,9.42,9.39,9.39]
["TC1100000105.rn.1",7.34,5.51,3.555,"up",0.000105953601873866,0.000957606669173219,"NONMMUG016973","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003013.mm","Noncoding",15987440,15990620,30,null,"NA","MTA_TR1600003013.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",6.95,7.52,7.55,5.26,5.38,5.89]
["TC1200001276.rn.1",9.62,5.69,15.242,"up",0.000111354241955603,0.000994600618278735,"LOC102546487","uncharacterized LOC102546487","chr12","-","mRNARGD7657155_1","Noncoding",21298312,21301961,30,null,"NA","mRNARGD7657155_1","Rat Genome Database","uncharacterized LOC102546487","chr12",100,100,{"$nulls":24},"NonCoding",10.51,9.59,8.77,5.88,5.57,5.62]
["TC1200000316.rn.1",7.17,9.3,-4.377,"down",0.000113119619309865,0.00100562994218611,"LOC686707","similar to tubulin beta 2","chr12","+","mRNARGD6678609_1","Pseudogene",18884412,18885371,30,null,"NA","mRNARGD6678609_1","Rat Genome Database","similar to tubulin beta 2","chr12",100,100,{"$nulls":24},"Pseudogene",7.26,6.92,7.32,8.81,9.79,9.3]
["TC0400002216.rn.1",4.67,5.18,-1.424,"down",0.000113492825471181,0.00100637257338432,"NONMMUG031896","Non-coding transcript identified by NONCODE: Antisense","chr4","-","MTA_TR0500000482.mm","Noncoding",9710638,9750549,30,null,"NA","MTA_TR0500000482.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",4.72,4.73,4.57,5.19,5.16,5.18]
["TC0700001885.rn.1",12.35,11.02,2.514,"up",0.000113903068894318,0.00100754427742803,"LOC300249","similar to 60S ribosomal protein L4 (L1)","chr7","+","LOC300249.aSep08-unspliced","Pseudogene",143443301,143444702,22,null,"NA","LOC300249.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L4 (L1)","chr7",100,100,{"$nulls":24},"Pseudogene",12.5,12.5,12.05,11.05,11.2,10.82]
["TC1700001604.rn.1",7.15,4.53,6.148,"up",0.000113963039608754,0.00100754427742803,"NONMMUG010731","Non-coding transcript identified by NONCODE: Linc","chr17","-","MTA_TR1300001130.mm","Noncoding",27701668,27706584,30,null,"NA","MTA_TR1300001130.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",7.25,6.92,7.27,4.59,4.71,4.29]
["TC0200002625.rn.1",9.07,6.96,4.317,"up",0.000113972972491283,0.00100754427742803,"ENSMUSG00000097582","predicted gene, 26527, Non-coding transcript identified by NONCODE: Antisense","chr2","-","MTA_TR1300006978.mm","Noncoding",23543100,23544963,30,null,"NA","MTA_TR1300006978.mm","MTA2Rn6","predicted gene, 26527, Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",8.9,8.75,9.57,6.96,7.08,6.83]
["TC0300003170.rn.1",5.49,4.98,1.424,"up",0.00011509511357943,0.0010123125154371,"feychy","Unannotated AceView Transcript","chr3","-","feychy.aSep08","Noncoding",46285558,46286433,30,null,"NA","feychy.aSep08","Ace View","Unannotated AceView Transcript","chr3",100,100,{"$nulls":24},"NonCoding",5.5,5.49,5.47,5.04,5.05,4.85]
["TC0600000064.rn.1",5.17,6.74,-2.969,"down",0.000119398142410193,0.00103911078747869,"LOC102552412","uncharacterized LOC102552412","chr6","+","mRNARGD7641950_1","Noncoding",4902938,4912997,30,null,"NA","mRNARGD7641950_1","Rat Genome Database","uncharacterized LOC102552412","chr6",100,100,{"$nulls":24},"NonCoding",5.42,5.09,5.01,6.24,7.1,6.87]
["TC0X00000283.rn.1",4.8,3.79,2.014,"up",0.000119530573189872,0.00103972022707295,"NONMMUG046337","Non-coding transcript identified by NONCODE: Linc","chrX","+","MTA_TR0X00009240.mm","Noncoding",28708747,28710221,30,null,"NA","MTA_TR0X00009240.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",4.76,4.76,4.87,3.75,3.66,3.95]
["TC0700003228.rn.1",3.65,4.5,-1.803,"down",0.000120161368752699,0.00104313999830242,"LOC102547447","uncharacterized LOC102547447","chr7","-","mRNARGD7515693_1","Noncoding",101769577,101798384,40,null,"NA","mRNARGD7515693_1","Rat Genome Database","uncharacterized LOC102547447","chr7",100,100,{"$nulls":24},"NonCoding",3.68,3.62,3.66,4.65,4.41,4.43]
["TC0900000664.rn.1",14.3,12.87,2.694,"up",0.000120937930037043,0.00104570073801567,"LOC367275","similar to 60S ribosomal protein L11","chr9","+","LOC367275.aSep08-unspliced","Pseudogene",61570996,61571544,26,null,"NA","LOC367275.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L11","chr9",100,100,{"$nulls":24},"Pseudogene",14.37,14.09,14.44,12.94,13.04,12.64]
["TC1600001790.rn.1",12.64,11.27,2.585,"up",0.000123016457215405,0.00105647364152168,"RGD1561635",null,"chr16","-",null,"Pseudogene",61851982,61852397,30,null,"NA","ENSRNOT00000017777","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:61516509:61516924:-1 gene:ENSRNOG00000013310 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",12.92,12.52,12.47,11.45,11.38,10.98]
["TC0500000658.rn.1",6.96,6.16,1.741,"up",0.000123156935356709,0.00105647364152168,null,null,"chr5","+",null,"Pseudogene",70188540,70188961,30,null,"NA","ENSRNOT00000037614","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:74347220:74347641:1 gene:ENSRNOG00000023626 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",6.9,7.07,6.91,6.17,6.36,5.96]
["TC1100000659.rn.1",7.8,8.31,-1.424,"down",0.000124340029636417,0.00106006602675299,"XLOC_008770","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr11","+","TCONS_00022753","Noncoding",65745476,65747742,30,null,"NA","TCONS_00022753","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr11",100,100,{"$nulls":24},"NonCoding",7.75,7.78,7.87,8.4,8.22,8.31]
["TC1400001492.rn.1",3.93,5.16,-2.346,"down",0.000125847080896643,0.00106749702636104,"LOC102546641","uncharacterized LOC102546641","chr14","-","mRNARGD7602201_1","Noncoding",17745294,17747617,30,null,"NA","mRNARGD7602201_1","Rat Genome Database","uncharacterized LOC102546641","chr14",100,100,{"$nulls":24},"NonCoding",3.98,3.95,3.86,4.86,5.32,5.3]
["TC0300004989.rn.1",6.95,6.25,1.625,"up",0.000126490905620002,0.00107046027768646,"LOC311687","similar to 60S ribosomal protein L7a","chr3","-","LOC311687.aSep08-unspliced","Pseudogene",173651183,173651984,30,null,"NA","LOC311687.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7a","chr3",100,100,{"$nulls":24},"Pseudogene",6.97,6.92,6.97,6.27,6.12,6.37]
["TC1700000460.rn.1",4.4,5.41,-2.014,"down",0.000126610814194027,0.00107076750407227,"NONMMUG010705","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","+","MTA_TR1300004946.mm","Noncoding",28827014,28827391,30,null,"NA","MTA_TR1300004946.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",4.28,4.68,4.24,5.55,5.37,5.3]
["TC1200000976.rn.1",4.19,5.36,-2.25,"down",0.000127466313232903,0.00107556175689464,"NONMMUG034428","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr12","-","MTA_TR0500006660.mm","Noncoding",6187880,6188937,30,null,"NA","MTA_TR0500006660.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr12",100,100,{"$nulls":24},"NonCoding",4.32,3.85,4.4,5.55,5.14,5.4]
["TC1000000851.rn.1",6.02,7.03,-2.014,"down",0.000128268770039442,0.00107953333544339,"RGD1563963","similar to Phosphoglycerate mutase 1 (Phosphoglycerate mutase isozyme B)","chr10","+","RGD1563963.aSep08-unspliced","Pseudogene",53330044,53330602,30,null,"NA","RGD1563963.aSep08-unspliced","Ace View","similar to Phosphoglycerate mutase 1 (Phosphoglycerate mutase isozyme B)","chr10",100,100,{"$nulls":24},"Pseudogene",6.15,6.13,5.77,6.99,7.08,7.03]
["TC0100002788.rn.1",7.28,5.31,3.918,"up",0.000128924958724557,0.00108295718472161,"NONMMUG039531","Non-coding transcript identified by NONCODE: Antisense","chr1","+","MTA_TR0700006971.mm","Noncoding",207998068,208004201,30,null,"NA","MTA_TR0700006971.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",7.42,6.86,7.57,5.54,5.23,5.17]
["TC1300001424.rn.1",5.08,6.89,-3.506,"down",0.000129371746483976,0.0010851359769064,"LOC102551918","uncharacterized LOC102551918","chr13","-","mRNARGD7675002_1","Noncoding",50599094,50636190,30,null,"NA","mRNARGD7675002_1","Rat Genome Database","uncharacterized LOC102551918","chr13",100,100,{"$nulls":24},"NonCoding",5.04,4.95,5.25,6.99,6.85,6.83]
["TC1600001976.rn.1",3.96,4.95,-1.986,"down",0.000134022276643667,0.00110893205235373,"NONMMUG039973","Non-coding transcript identified by NONCODE: Antisense","chr16","-","MTA_TR0800000564.mm","Noncoding",78847442,78850957,30,null,"NA","MTA_TR0800000564.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr16",100,100,{"$nulls":24},"NonCoding",3.8,4.06,4.03,5.11,5.02,4.72]
["TC0100003986.rn.1",7.54,9.01,-2.77,"down",0.000134224356180279,0.00110899542734883,"KnowTID_00000877","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR1000005504.mm","Noncoding",3709426,3711099,30,null,"NA","MTA_TR1000005504.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",7.63,7.27,7.72,9,9.2,8.84]
["TC0400003462.rn.1",4.77,5.83,-2.085,"down",0.000134606779916358,0.0011108096788252,"larwey","Unannotated AceView Transcript","chr4","-","larwey.aSep08","Noncoding",133008974,133013557,80,null,"NA","larwey.aSep08","Ace View","Unannotated AceView Transcript","chr4",100,100,{"$nulls":24},"NonCoding",4.77,4.85,4.69,5.67,5.9,5.93]
["TC0100007014.rn.1",3.8,4.42,-1.537,"down",0.000134887653173905,0.00111091471807044,"uc009kqd.1","cDNA, clone:Y0G0123C02, strand:unspecified.","chr1","-","MTA_TR0700015892.mm","Noncoding",217034343,217034712,30,null,"NA","MTA_TR0700015892.mm","MTA2Rn6","cDNA, clone:Y0G0123C02, strand:unspecified.","chr1",100,100,{"$nulls":24},"NonCoding",3.73,3.83,3.83,4.53,4.25,4.47]
["TC0300000501.rn.1",6.16,3.76,5.278,"up",0.000136272317524543,0.00111923708166375,"NONMMUG022844","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002646.mm","Noncoding",28797410,28800748,40,null,"NA","MTA_TR0200002646.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.77,5.79,6.92,3.53,3.7,4.06]
["TC1800000961.rn.1",4.26,4.95,-1.613,"down",0.000136952603927229,0.00112323120057597,"LOC102553970","uncharacterized LOC102553970","chr18","+","mRNARGD7560336_1","Noncoding",82063476,82126514,50,null,"NA","mRNARGD7560336_1","Rat Genome Database","uncharacterized LOC102553970","chr18",100,100,{"$nulls":24},"NonCoding",4.38,4.27,4.14,5.05,4.85,4.95]
["TC0100001844.rn.1",7.35,4.74,6.105,"up",0.000137146544051351,0.00112429099420293,"NONMMUG038463","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR0700004102.mm","Noncoding",141777052,141778495,30,null,"NA","MTA_TR0700004102.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",6.85,7.07,8.14,4.36,4.69,5.17]
["TC1300001406.rn.1",3.95,6.4,-5.464,"down",0.000138992187296249,0.00113620389906971,"LOC102547051","uncharacterized LOC102547051","chr13","-","mRNARGD7547452_1","Noncoding",49543476,49560729,50,null,"NA","mRNARGD7547452_1","Rat Genome Database","uncharacterized LOC102547051","chr13",100,100,{"$nulls":24},"NonCoding",3.67,3.76,4.43,6.55,5.94,6.72]
["TC0800002839.rn.1",5.54,7.4,-3.63,"down",0.000145118668279652,0.00117032490912422,"NONMMUG043178","Non-coding transcript identified by NONCODE: Linc","chr8","-","MTA_TR0900008298.mm","Noncoding",73590179,73591697,30,null,"NA","MTA_TR0900008298.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",5.35,5.57,5.7,7.39,7.6,7.22]
["TC0400003508.rn.1",3.77,4.35,-1.495,"down",0.000145695158300674,0.00117332897303709,"NONMMUG036248","Non-coding transcript identified by NONCODE: Antisense","chr4","-","MTA_TR0600009426.mm","Noncoding",142446722,142453061,70,null,"NA","MTA_TR0600009426.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",3.74,3.71,3.87,4.45,4.29,4.3]
["TC0500002420.rn.1",5.16,7.11,-3.864,"down",0.000145823734697374,0.00117363600116536,"ENSMUSG00000099150","N/A, novel transcript","chr5","-","MTA_TR0400007902.mm","Noncoding",38794972,38795483,30,null,"NA","MTA_TR0400007902.mm","MTA2Rn6","N/A, novel transcript","chr5",100,100,{"$nulls":24},"NonCoding",5.06,5.08,5.35,6.9,6.81,7.62]
["TC1100001499.rn.1",7.04,5.25,3.458,"up",0.000147672191225295,0.00118589322616667,"LOC102548829","uncharacterized LOC102548829","chr11","-","mRNARGD7583326_1","Noncoding",52809954,52838767,40,null,"NA","mRNARGD7583326_1","Rat Genome Database","uncharacterized LOC102548829","chr11",100,100,{"$nulls":24},"NonCoding",7.18,7.31,6.64,5.18,5.02,5.55]
["TC1000002435.rn.1",3.8,4.45,-1.569,"down",0.000147733172610942,0.00118589322616667,"NCBI_Gene:100862104","PREDICTED:  uncharacterized LOC100862104 (LOC100862104), miscRNA.","chr10","-","MTA_TR1700005946.mm","Noncoding",15102417,15102965,30,null,"NA","MTA_TR1700005946.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862104 (LOC100862104), miscRNA.","chr10",100,100,{"$nulls":24},"NonCoding",3.93,3.59,3.87,4.47,4.44,4.45]
["TC1700002367.rn.1",7.4,6.35,2.071,"up",0.000147883475979948,0.00118600362938489,null,null,"chr17","-",null,"Pseudogene",90155479,90155938,30,null,"NA","ENSRNOT00000071601","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:91818487:91818946:-1 gene:ENSRNOG00000046464 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",7.22,7.33,7.64,6.36,6.44,6.25]
["TC0200001119.rn.1",11.22,11.73,-1.424,"down",0.000148908233270547,0.00119092307557213,"LOC679491","hypothetical protein LOC679491","chr2","+","mRNARGD6749679_1","Pseudogene",140805601,140806399,30,null,"NA","mRNARGD6749679_1","Rat Genome Database","hypothetical protein LOC679491","chr2",100,100,{"$nulls":24},"Pseudogene",11.2,11.23,11.24,11.66,11.84,11.7]
["TC0200001127.rn.1",11.22,11.73,-1.424,"down",0.000148908233270547,0.00119092307557213,"LOC100911263","eukaryotic translation initiation factor 4E-like","chr2","+","mRNARGD6493803_1","Pseudogene",141422749,141423547,30,null,"NA","mRNARGD6493803_1","Rat Genome Database","eukaryotic translation initiation factor 4E-like","chr2",100,100,{"$nulls":24},"Pseudogene",11.2,11.23,11.24,11.66,11.84,11.7]
["TC1600001768.rn.1",3.72,4.36,-1.558,"down",0.00015484535073393,0.00121931939601047,"NONMMUG040304","Non-coding transcript identified by NONCODE: Linc","chr16","-","MTA_TR0800001278.mm","Noncoding",61078179,61078963,30,null,"NA","MTA_TR0800001278.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",3.74,3.61,3.8,4.3,4.49,4.3]
["TC0600001943.rn.1",6.57,5.92,1.569,"up",0.000155216617580311,0.00122066558589036,"LOC366782","similar to 60S ribosomal protein L7","chr6","-","LOC366782.aSep08-unspliced","Pseudogene",18768591,18769368,30,null,"NA","LOC366782.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7","chr6",100,100,{"$nulls":24},"Pseudogene",6.77,6.48,6.46,5.94,5.99,5.83]
["TC1000003528.rn.1",4.63,3.92,1.636,"up",0.00015612758680611,0.00122260322373272,"LOC102555854","uncharacterized LOC102555854","chr10","-","mRNARGD7666235_1","Noncoding",76349175,76366142,30,null,"NA","mRNARGD7666235_1","Rat Genome Database","uncharacterized LOC102555854","chr10",100,100,{"$nulls":24},"NonCoding",4.6,4.76,4.52,3.89,3.89,3.98]
["TC1700001992.rn.1",5.11,6.78,-3.182,"down",0.000156588928560696,0.00122260322373272,"KnowTID_00003775","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17","-","MTA_TR1800000127.mm","Noncoding",60535955,60537420,30,null,"NA","MTA_TR1800000127.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",5.19,4.81,5.32,6.63,7.22,6.5]
["TC1900000399.rn.1",6.9,7.26,-1.283,"down",0.000157746953819248,0.00122714838100947,"LOC685331","similar to glutamate receptor ionotropic N-methyl D-aspartate-like 1A","chr19","+","mRNARGD6673280_1","Pseudogene",29323111,29324203,30,null,"NA","mRNARGD6673280_1","Rat Genome Database","similar to glutamate receptor ionotropic N-methyl D-aspartate-like 1A","chr19",100,100,{"$nulls":24},"Pseudogene",6.91,6.93,6.85,7.28,7.26,7.23]
["TC0500003012.rn.1",4.73,6.12,-2.621,"down",0.000157937964014802,0.00122808432090471,"LOC102556183","uncharacterized LOC102556183","chr5","-","mRNARGD7632306_1","Noncoding",98830806,98846778,30,null,"NA","mRNARGD7632306_1","Rat Genome Database","uncharacterized LOC102556183","chr5",100,100,{"$nulls":24},"NonCoding",4.86,4.86,4.48,6.16,5.89,6.3]
["TC1500001414.rn.1",12.64,10.91,3.317,"up",0.000158420712695408,0.00123025669256194,"LOC685770","hypothetical protein LOC685770","chr15","-","LOC685770.aSep08-unspliced","Pseudogene",18532251,18533053,30,null,"NA","LOC685770.aSep08-unspliced","Ace View","hypothetical protein LOC685770","chr15",100,100,{"$nulls":24},"Pseudogene",12.6,12.77,12.56,11.13,10.74,10.86]
["TC0500000916.rn.1",7.78,6.47,2.479,"up",0.000162153127795091,0.00125245085946133,"LOC102555797","uncharacterized LOC102555797","chr5","+","mRNARGD7556519_1","Noncoding",105204216,105207659,30,null,"NA","mRNARGD7556519_1","Rat Genome Database","uncharacterized LOC102555797","chr5",100,100,{"$nulls":24},"NonCoding",7.83,7.6,7.92,6.15,6.7,6.57]
["TC1900000448.rn.1",4.27,5.15,-1.84,"down",0.000162226476191822,0.00125246049685695,"LOC100911349","uncharacterized LOC100911349","chr19","+","mRNARGD6493504_1","Noncoding",34758738,34826619,60,null,"NA","mRNARGD6493504_1","Rat Genome Database","uncharacterized LOC100911349","chr19",100,100,{"$nulls":24},"NonCoding",4.23,4.23,4.35,5.05,5.44,4.97]
["TC1000003875.rn.1",11.79,10.74,2.071,"up",0.00016274502888469,0.00125590577376986,null,null,"chr10","-",null,"Pseudogene",90517178,90517542,30,null,"NA","ENSRNOT00000044151","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:90308857:90309221:-1 gene:ENSRNOG00000032317 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",12.07,11.49,11.81,10.79,10.86,10.56]
["TC0600000670.rn.1",7.35,5.02,5.028,"up",0.000164435336067005,0.00126501604199289,"NONMMUG008873","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001058.mm","Noncoding",60444832,60447166,30,null,"NA","MTA_TR1200001058.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",6.9,7.32,7.84,4.38,5.13,5.54]
["TC0100003426.rn.1",4.94,5.57,-1.548,"down",0.000165731628743205,0.00127048725635402,null,null,"chr1","+",null,"Pseudogene",246715121,246715658,30,null,"NA","ENSRNOT00000019859","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:253955803:253956340:1 gene:ENSRNOG00000014782 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",4.93,4.87,5.03,5.65,5.63,5.44]
["TC0200002785.rn.1",6.95,5.4,2.928,"up",0.000165890304144772,0.00127058221926756,"NONMMUG011828","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR1300007486.mm","Noncoding",33962875,33965520,30,null,"NA","MTA_TR1300007486.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.8,6.96,7.09,5.19,5.24,5.76]
["TC0100004326.rn.1",12.69,13.46,-1.705,"down",0.000167018592903358,0.00127604509185636,"B2-adapt-app_C.0","Unannotated AceView Transcript","chr1","-","B2-adapt-app_C.0.aSep08-unspliced","Pseudogene",36954439,36957406,88,null,"NA","B2-adapt-app_C.0.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"Pseudogene",12.77,12.52,12.77,13.4,13.53,13.46]
["TC1500002417.rn.1",15.66,14.96,1.625,"up",0.000168266948300445,0.00128031763422121,"Rps7","ribosomal protein S7","chr15","-","Rps7.aSep08-unspliced","Pseudogene",106314141,106314782,30,null,"NA","Rps7.aSep08-unspliced","Ace View","ribosomal protein S7","chr15",100,100,{"$nulls":24},"Pseudogene",15.78,15.65,15.54,14.98,15.1,14.8]
["TC1300001104.rn.1",7.6,8.75,-2.219,"down",0.000169769717408018,0.0012865339941766,"Mir29c","Unannotated AceView Transcript","chr13","+","lorlo.aSep08-unspliced","Noncoding",113782204,113782960,30,null,"NA","lorlo.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr13",100,100,{"$nulls":24},"NonCoding",7.56,7.72,7.51,8.55,8.92,8.79]
["TC0700002855.rn.1",5.87,8.47,-6.063,"down",0.000169898623144385,0.0012865339941766,"LOC102549911","uncharacterized LOC102549911","chr7","-","mRNARGD7518246_1","Noncoding",65582719,65583235,30,null,"NA","mRNARGD7518246_1","Rat Genome Database","uncharacterized LOC102549911","chr7",100,100,{"$nulls":24},"NonCoding",6.23,5.62,5.76,8.35,8.52,8.53]
["TC0100007215.rn.1",3.71,4.53,-1.765,"down",0.000170813376559814,0.00128883351147239,"ENSMUSG00000087830","predicted gene, 22820, Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR1900003852.mm","Noncoding",224886860,224887174,30,null,"NA","MTA_TR1900003852.mm","MTA2Rn6","predicted gene, 22820, Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",3.78,3.68,3.68,4.52,4.68,4.4]
["TC0500000147.rn.1",3.9,4.38,-1.395,"down",0.000173173980685794,0.00130112682460767,"LOC100909669","glyceraldehyde-3-phosphate dehydrogenase-like","chr5","+","ENSRNOT00000038009","Pseudogene",19010104,19012947,28,null,100909669,"ENSRNOT00000038009","ENSEMBL","ensembl:known chromosome:Rnor_5.0:5:23799247:23800178:1 gene:ENSRNOG00000024355 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,null,null,"ENSRNOT00000038009","Rn.233660",{"$nulls":20},"Pseudogene",3.86,4,3.85,4.34,4.34,4.46]
["TC1900001011.rn.1",4.7,6.08,-2.603,"down",0.000173424038778545,0.00130244227307484,"KnowTID_00007107","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr19","-","MTA_TR0800003531.mm","Noncoding",11150738,11152396,30,null,"NA","MTA_TR0800003531.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr19",100,100,{"$nulls":24},"NonCoding",4.8,4.73,4.58,5.9,5.8,6.53]
["TC0500000492.rn.1",3.96,4.65,-1.613,"down",0.000174504077409795,0.00130716271180921,"NONMMUG028965","Non-coding transcript identified by NONCODE: Antisense","chr5","+","MTA_TR0400001001.mm","Noncoding",57866545,57881955,42,null,"NA","MTA_TR0400001001.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",4.06,3.75,4.06,4.74,4.63,4.57]
["TC0100002071.rn.1",7.49,5.13,5.134,"up",0.000176989392841416,0.00131933449478843,"NONMMUG038751","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR0700004705.mm","Noncoding",162105247,162106694,30,null,"NA","MTA_TR0700004705.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",7.41,7.41,7.64,5.12,4.89,5.37]
["TC0100001349.rn.1",5.23,6,-1.705,"down",0.00017758571140885,0.00132054671065456,null,null,"chr1","+",null,"Pseudogene",94641581,94642289,30,null,"NA","ENSRNOT00000033790","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:95730880:95731588:1 gene:ENSRNOG00000027720 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",5.32,5.38,5,6.06,5.85,6.1]
["TC1000002318.rn.1",4.93,5.7,-1.705,"down",0.000180433797866096,0.00133261713551529,"ENSMUSG00000097590","predicted gene, 26675, Non-coding transcript identified by NONCODE: Antisense","chr10","-","MTA_TR1600000034.mm","Noncoding",11901963,11921254,30,null,"NA","MTA_TR1600000034.mm","MTA2Rn6","predicted gene, 26675, Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",4.98,4.88,4.93,5.66,5.96,5.49]
["TC0400002614.rn.1",6.4,9.07,-6.364,"down",0.000181510862142536,0.0013388641979949,"NONMMUG034875","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600006719.mm","Noncoding",58085196,58090810,30,null,"NA","MTA_TR0600006719.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",6.64,5.68,6.87,8.78,9.2,9.22]
["TC0600002622.rn.1",6.85,7.63,-1.717,"down",0.000182356105068969,0.00134168060192845,"flortu","Unannotated AceView Transcript","chr6","-","flortu.aSep08","Noncoding",93445630,93461634,173,null,"NA","flortu.aSep08","Ace View","Unannotated AceView Transcript","chr6",100,100,{"$nulls":24},"NonCoding",6.74,6.88,6.94,7.62,7.63,7.63]
["TC0400003161.rn.1",11.75,10.66,2.129,"up",0.00018401690103506,0.00134967151896959,"LOC680041","similar to 40S ribosomal protein S25","chr4","-","LOC680041.aSep08-unspliced","Pseudogene",113800635,113801079,30,null,"NA","LOC680041.aSep08-unspliced","Ace View","similar to 40S ribosomal protein S25","chr4",100,100,{"$nulls":24},"Pseudogene",11.77,12.03,11.45,10.73,10.69,10.57]
["TC0100007082.rn.1",5.82,8.39,-5.938,"down",0.000184771524492623,0.00135120910442648,"NCBI_Gene:100861931","PREDICTED:  uncharacterized LOC100861931 (LOC100861931), miscRNA.","chr1","-","MTA_TR1900003175.mm","Noncoding",219991927,220005069,30,null,"NA","MTA_TR1900003175.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861931 (LOC100861931), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",5.83,5.67,5.96,8.44,8.3,8.44]
["TC0500000198.rn.1",6.17,5.09,2.114,"up",0.000186051297888034,0.00135365812612965,null,null,"chr5","+",null,"Noncoding",24420807,24421799,30,null,"NA","NONRATT042634","NONCODE","Non-coding transcript identified by NONCODE","chr5",100,100,{"$nulls":24},"NonCoding",6.37,6.1,6.05,4.94,5.2,5.13]
["TC0200000290.rn.1",4.44,3.64,1.741,"up",0.000186517243129814,0.00135621223541565,"Mast4","Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1M4F3] Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr2","+","TCONS_00062556","Noncoding",32888189,32889448,30,null,"NA","TCONS_00062556","Chalmel","Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1M4F3] Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr2",100,100,{"$nulls":24},"NonCoding",4.29,4.65,4.38,3.49,3.61,3.81]
["TC1100000102.rn.1",7.44,5.49,3.864,"up",0.000186806750311174,0.00135774897893532,"NONMMUG016971","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003011.mm","Noncoding",15918823,15922732,30,null,"NA","MTA_TR1600003011.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",7.16,7.18,7.99,5.23,5.27,5.96]
["TC0600000669.rn.1",8.29,6.05,4.724,"up",0.000187530638234157,0.00136187070098894,"NONMMUG008872","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001057.mm","Noncoding",60429222,60432971,30,null,"NA","MTA_TR1200001057.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",7.79,8.26,8.81,5.99,5.77,6.38]
["TC1500001847.rn.1",7.1,5.67,2.694,"up",0.000188131270027299,0.00136509118280878,"KnowTID_00002495","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15","-","MTA_TR1400006865.mm","Noncoding",42002182,42005635,30,null,"NA","MTA_TR1400006865.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",6.66,7.13,7.52,5.46,5.65,5.89]
["TC0300002597.rn.1",7.6,8.79,-2.282,"down",0.000188693857602742,0.00136694780801309,"NCBI_Gene:100862073","PREDICTED:  uncharacterized LOC100862073 (LOC100862073), miscRNA.","chr3","+","MTA_TR0200009752.mm","Noncoding",176808006,176816142,30,null,"NA","MTA_TR0200009752.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862073 (LOC100862073), miscRNA.","chr3",100,100,{"$nulls":24},"NonCoding",7.81,7.3,7.68,8.78,8.88,8.72]
["TC0900000018.rn.1",13.73,13.1,1.548,"up",0.000189682727006847,0.00137062339885022,null,null,"chr9","+",null,"Pseudogene",2107592,2107900,30,null,"NA","ENSRNOT00000050352","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:50688737:50689045:1 gene:ENSRNOG00000038648 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr9",100,100,{"$nulls":24},"Pseudogene",13.91,13.62,13.65,13.19,13.07,13.05]
["TC0300004206.rn.1",4.1,5.47,-2.585,"down",0.000190128576020241,0.00137310346915541,"KnowTID_00004565","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr3","-","MTA_TR0200016536.mm","Noncoding",124123944,124126145,30,null,"NA","MTA_TR0200016536.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",4.39,3.93,3.99,5.55,5.74,5.13]
["TC1100001012.rn.1",12.03,11.58,1.366,"up",0.000192109431324857,0.0013858525463223,"LOC287947","similar to ribosomal protein L31","chr11","+","LOC287947.aSep08-unspliced","Pseudogene",87658804,87659177,30,null,"NA","LOC287947.aSep08-unspliced","Ace View","similar to ribosomal protein L31","chr11",100,100,{"$nulls":24},"Pseudogene",12.09,12.09,11.91,11.6,11.57,11.56]
["TC0100006388.rn.1",5.36,6.37,-2.014,"down",0.000192491997391696,0.00138803590149072,"KnowTID_00006888","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR0700013856.mm","Noncoding",174765553,174767412,30,null,"NA","MTA_TR0700013856.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.51,5.41,5.17,6.25,6.67,6.19]
["TC0X00002215.rn.1",6.4,7.77,-2.585,"down",0.000196117177708911,0.00140484597689958,"uc009uim.1","cDNA, clone:Y2G0107J16, strand:unspecified.","chrX","-","MTA_TR0X00008348.mm","Noncoding",106824805,106825066,30,null,"NA","MTA_TR0X00008348.mm","MTA2Rn6","cDNA, clone:Y2G0107J16, strand:unspecified.","chrX",100,100,{"$nulls":24},"NonCoding",6.51,6.58,6.12,7.85,7.63,7.82]
["TC0400002097.rn.1",10.4,9.04,2.567,"up",0.000197702526266309,0.00141440506050976,"LOC500371","similar to ribosomal protein S8","chr4","+","LOC500371.aSep08-unspliced","Pseudogene",183937144,183937849,30,null,"NA","LOC500371.aSep08-unspliced","Ace View","similar to ribosomal protein S8","chr4",100,100,{"$nulls":24},"Pseudogene",10.37,10.65,10.18,9.15,9.09,8.87]
["TC0300001624.rn.1",13.79,12.53,2.395,"up",0.000208225630048862,0.00146026944674153,"Rpl32-ps1","ribosomal protein L32, pseudogene 1","chr3","+","ENSRNOT00000036031","Pseudogene",117510447,117510987,26,"3q36",679759,"ENSRNOT00000036031","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:124034166:124034675:1 gene:ENSRNOG00000026921 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,null,null,"ENSRNOT00000036031","Rn.224524","adrenal gland| adult",{"$nulls":19},"Pseudogene",13.87,13.48,14.03,12.66,12.63,12.3]
["TC0200004162.rn.1",5.47,6.58,-2.158,"down",0.000209038367399662,0.0014612496901809,"ENSMUSG00000083438","predicted gene 5402, SUMO/sentrin specific peptidase 2 (Senp2) pseudogene","chr2","-","MTA_TR0X00007307.mm","Pseudogene",193837074,193838731,30,null,"NA","MTA_TR0X00007307.mm","MTA2Rn6","predicted gene 5402, SUMO/sentrin specific peptidase 2 (Senp2) pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",5.36,5.52,5.52,6.36,6.57,6.81]
["TC0100007975.rn.1",3.46,3.87,-1.329,"down",0.000209216868623005,0.00146190918135568,"XLOC_002362","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr1","-","TCONS_00010608","Noncoding",280769275,280772766,30,null,"NA","TCONS_00010608","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr1",100,100,{"$nulls":24},"NonCoding",3.4,3.42,3.57,3.88,3.85,3.88]
["TC0400003486.rn.1",4.11,4.98,-1.828,"down",0.000209461539719851,0.0014624422855601,"NONMMUG036206","Non-coding transcript identified by NONCODE: Linc","chr4","-","MTA_TR0600009362.mm","Noncoding",137780514,137785094,100,null,"NA","MTA_TR0600009362.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",4.16,4.21,3.97,5.05,4.79,5.1]
["TC0500000320.rn.1",4.85,6.37,-2.868,"down",0.000216866087195801,0.00149432003200248,"flovo","Unannotated AceView Transcript","chr5","+","flovo.aSep08","Noncoding",36684568,36688937,40,null,"NA","flovo.aSep08","Ace View","Unannotated AceView Transcript","chr5",100,100,{"$nulls":24},"NonCoding",5.13,4.4,5.03,6.47,6.34,6.31]
["TC1100001590.rn.1",4.11,4.81,-1.625,"down",0.000217513722672119,0.00149702815038871,"ENSMUSG00000097344","predicted gene, 26732, Non-coding transcript identified by NONCODE: Antisense","chr11","-","MTA_TR1600002432.mm","Noncoding",61320839,61322997,30,null,"NA","MTA_TR1600002432.mm","MTA2Rn6","predicted gene, 26732, Non-coding transcript identified by NONCODE: Antisense","chr11",100,100,{"$nulls":24},"NonCoding",4.14,4.16,4.02,4.72,5.01,4.71]
["TC1700000968.rn.1",5.15,7.24,-4.257,"down",0.00021822891793431,0.00149954688822662,"NONMMUG021912","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","+","MTA_TR0200010219.mm","Noncoding",75099537,75100582,30,null,"NA","MTA_TR0200010219.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",5.15,4.73,5.58,7.13,6.7,7.88]
["TC0300002957.rn.1",5.32,6.24,-1.892,"down",0.000218676613386522,0.0015008421379444,"LOC690381","similar to glycosyltransferase-like domain containing 1 isoform b","chr3","-","mRNARGD6603735_1","Pseudogene",16498188,16499499,30,null,"NA","mRNARGD6603735_1","Rat Genome Database","similar to glycosyltransferase-like domain containing 1 isoform b","chr3",100,100,{"$nulls":24},"Pseudogene",5.45,5.25,5.25,6.45,6.15,6.13]
["TC0600001402.rn.1",8.64,9.79,-2.219,"down",0.000224665795595237,0.00152806168178734,"LOC314407","similar to importin 11","chr6","+","LOC314407.aSep08-unspliced","Pseudogene",127839463,127843557,30,null,"NA","LOC314407.aSep08-unspliced","Ace View","similar to importin 11","chr6",100,100,{"$nulls":24},"Pseudogene",8.64,8.8,8.48,9.75,9.96,9.67]
["TC0200004309.rn.1",9.28,7.89,2.621,"up",0.000226755366585526,0.00153682589679596,"LOC683372","similar to 60S ribosomal protein L22 (Heparin-binding protein HBp15)","chr2","-","mRNARGD6728639_1","Pseudogene",202138634,202139089,30,null,"NA","mRNARGD6728639_1","Rat Genome Database","similar to 60S ribosomal protein L22 (Heparin-binding protein HBp15)","chr2",100,100,{"$nulls":24},"Pseudogene",9.65,9.01,9.18,7.88,8.16,7.62]
["TC0400000248.rn.1",7.93,5.73,4.595,"up",0.000226887103588274,0.00153682589679596,"LOC102556240","uncharacterized LOC102556240","chr4","+","mRNARGD7751939_1","Noncoding",22934396,22935023,30,null,"NA","mRNARGD7751939_1","Rat Genome Database","uncharacterized LOC102556240","chr4",100,100,{"$nulls":24},"NonCoding",7.99,8.21,7.59,5.27,5.83,6.1]
["TC1400002322.rn.1",3.76,4.43,-1.591,"down",0.000226925694145962,0.00153682589679596,"LOC102547861","uncharacterized LOC102547861","chr14","-","mRNARGD7581387_1","Noncoding",104619455,104629871,50,null,"NA","mRNARGD7581387_1","Rat Genome Database","uncharacterized LOC102547861","chr14",100,100,{"$nulls":24},"NonCoding",3.78,3.79,3.7,4.24,4.49,4.55]
["TC0300001802.rn.1",4.26,5.29,-2.042,"down",0.000226927547365243,0.00153682589679596,"NONMMUG024806","Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200006936.mm","Noncoding",128426171,128428055,30,null,"NA","MTA_TR0200006936.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",4.27,4.42,4.09,4.96,5.58,5.33]
["TC0900000314.rn.1",5.22,5.95,-1.659,"down",0.000227549609226579,0.00154043813790916,"NCBI_Gene:100862363","PREDICTED:  uncharacterized LOC100862363 (LOC100862363), miscRNA.","chr9","+","MTA_TR1700007838.mm","Noncoding",23325093,23330334,30,null,"NA","MTA_TR1700007838.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862363 (LOC100862363), miscRNA.","chr9",100,100,{"$nulls":24},"NonCoding",5.27,5.23,5.16,6.06,5.86,5.93]
["TC1300000702.rn.1",7.72,5.89,3.555,"up",0.000228369006943426,0.00154417984414724,"LOC685495","osteoclast-stimulating factor 1-like","chr13","+","ENSRNOT00000072984","Pseudogene",85518953,85520210,30,null,100910652,"ENSRNOT00000072984","ENSEMBL","ensembl:known chromosome:Rnor_5.0:13:90162262:90162902:1 gene:ENSRNOG00000049231 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,null,null,"ENSRNOT00000072984","Rn.203230","colon| dorsal root ganglion| lung| adult",{"$nulls":19},"Pseudogene",8.09,7.68,7.4,5.35,6.21,6.1]
["TC0200000048.rn.1",5,4.65,1.275,"up",0.000229070344873873,0.00154711545909955,"NONMMUG011460","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR1300002594.mm","Noncoding",5508506,5510704,30,null,"NA","MTA_TR1300002594.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",4.93,5.06,5.02,4.62,4.65,4.67]
["TC1100001158.rn.1",4.85,5.69,-1.79,"down",0.000229392479937648,0.00154868898911655,"LOC102546782","uncharacterized LOC102546782","chr11","-","mRNARGD7521172_1","Noncoding",16670860,16673632,23,null,"NA","mRNARGD7521172_1","Rat Genome Database","uncharacterized LOC102546782","chr11",100,100,{"$nulls":24},"NonCoding",4.86,5.03,4.65,5.66,5.9,5.51]
["TC0700000844.rn.1",6.93,8.16,-2.346,"down",0.000232565556429347,0.00156271174969043,"NONMMUG004936","Non-coding transcript identified by NONCODE: Linc","chr7","+","MTA_TR1000009574.mm","Noncoding",66687843,66690891,30,null,"NA","MTA_TR1000009574.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",7.13,6.94,6.73,7.85,8.22,8.41]
["TC1700001952.rn.1",5.39,3.72,3.182,"up",0.000232596180043813,0.00156271174969043,"NONMMUG019237","Non-coding transcript identified by NONCODE: Linc","chr17","-","MTA_TR1800000078.mm","Noncoding",55328229,55330927,30,null,"NA","MTA_TR1800000078.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",5.21,5.17,5.78,3.83,3.65,3.69]
["TC0X00001361.rn.1",7.51,6.37,2.204,"up",0.00023397101705088,0.00157008931083645,null,null,"chrX","+",null,"Pseudogene",159776417,159777224,30,null,"NA","ENSRNOT00000001155","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:154402193:154403000:1 gene:ENSRNOG00000000868 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",7.7,7.58,7.24,6.3,6.25,6.56]
["TC0200004924.rn.1",8.23,7.53,1.625,"up",0.000235319545487723,0.00157327286819354,"LOC685098","similar to 60S ribosomal protein L29 (P23)","chr2","-","LOC685098.aSep08-unspliced","Pseudogene",259488289,259488846,30,null,"NA","LOC685098.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L29 (P23)","chr2",100,100,{"$nulls":24},"Pseudogene",8.18,8.19,8.32,7.47,7.55,7.57]
["TC0900002416.rn.1",4.65,5.3,-1.569,"down",0.000235371013321523,0.00157327286819354,"LOC102552946","uncharacterized LOC102552946","chr9","-","mRNARGD7679893_1","Noncoding",94828427,94841151,80,null,"NA","mRNARGD7679893_1","Rat Genome Database","uncharacterized LOC102552946","chr9",100,100,{"$nulls":24},"NonCoding",4.8,4.55,4.61,5.12,5.35,5.44]
["TC0100007846.rn.1",4.48,5.71,-2.346,"down",0.000235476903569115,0.00157327286819354,"NONMMUG021546","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR1900005572.mm","Noncoding",267036521,267038318,30,null,"NA","MTA_TR1900005572.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",4.43,4.39,4.62,6.06,5.76,5.32]
["TC1700000141.rn.1",14.76,14.02,1.67,"up",0.000236795359046891,0.00157842370759921,null,null,"chr17","+",null,"Pseudogene",9136619,9136990,30,null,"NA","ENSRNOT00000038984","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:11298261:11298632:1 gene:ENSRNOG00000050692 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",14.81,14.64,14.82,14.13,14.14,13.79]
["TC0300000891.rn.1",7.24,5.49,3.364,"up",0.000237571484795988,0.00158117021547552,"NONMMUG023494","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200003790.mm","Noncoding",62703599,62704369,30,null,"NA","MTA_TR0200003790.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",7.03,7.16,7.52,5.06,5.49,5.91]
["TC0500004056.rn.1",9.47,8.55,1.892,"up",0.000240630126189777,0.00159358975297088,"LOC366502","hypothetical gene supported by NM_022949","chr5","-","LOC366502.aSep08-unspliced","Pseudogene",165463309,165463979,30,null,"NA","LOC366502.aSep08-unspliced","Ace View","hypothetical gene supported by NM_022949","chr5",100,100,{"$nulls":24},"Pseudogene",9.69,9.32,9.4,8.49,8.5,8.65]
["TC0700000211.rn.1",9.17,10.39,-2.329,"down",0.000244054714351276,0.00160890870701936,"NCBI_Gene:100862154","PREDICTED:  uncharacterized LOC100862154 (LOC100862154), miscRNA.","chr7","+","MTA_TR1000007857.mm","Noncoding",12426809,12427414,30,null,"NA","MTA_TR1000007857.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862154 (LOC100862154), miscRNA.","chr7",100,100,{"$nulls":24},"NonCoding",9.43,8.78,9.31,10.33,10.55,10.29]
["TC1000000394.rn.1",10.29,9.23,2.085,"up",0.000248103548196653,0.0016257286819027,null,null,"chr10","+",null,"Pseudogene",26002869,26003236,30,null,"NA","ENSRNOT00000004399","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:25851797:25852164:1 gene:ENSRNOG00000003299 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",10.55,10.12,10.2,9.43,9.3,8.96]
["TC1100000913.rn.1",5.36,4.41,1.932,"up",0.000248792951128439,0.00162840329843712,"NONMMUG016034","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","+","MTA_TR1600004761.mm","Noncoding",83086159,83088540,30,null,"NA","MTA_TR1600004761.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",5.2,5.46,5.41,4.32,4.23,4.69]
["TC1700000757.rn.1",9.1,8.31,1.729,"up",0.000250400574529872,0.00163240577334108,"RGD1563690","similar to 40S ribosomal protein S6","chr17","+","mRNARGD6668815_1","Pseudogene",52623035,52623819,30,null,"NA","mRNARGD6668815_1","Rat Genome Database","similar to 40S ribosomal protein S6","chr17",100,100,{"$nulls":24},"Pseudogene",9.32,9.06,8.92,8.19,8.5,8.25]
["TC0100006072.rn.1",5.12,5.95,-1.778,"down",0.000250415967082307,0.00163240577334108,"NONMMUG038746","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR0700012826.mm","Noncoding",161881180,161881548,30,null,"NA","MTA_TR0700012826.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",5.17,5.04,5.14,5.97,5.84,6.05]
["TC0900001667.rn.1",5.59,7.49,-3.732,"down",0.000250796923399267,0.00163281489869188,"NONMMUG018342","Non-coding transcript identified by NONCODE: Linc","chr9","-","MTA_TR1700003176.mm","Noncoding",21133977,21136683,30,null,"NA","MTA_TR1700003176.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",5.8,5.17,5.81,7.18,7.51,7.79]
["TC0500002929.rn.1",4.33,5.94,-3.053,"down",0.000252218983556881,0.00163970657311623,"KnowTID_00005433","Non-coding transcript identified by Luo, et al.","chr5","-","MTA_TR0400009734.mm","Noncoding",84911248,84915161,30,null,"NA","MTA_TR0400009734.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al.","chr5",100,100,{"$nulls":24},"NonCoding",4.42,4.29,4.28,5.92,6.11,5.78]
["TC1900000388.rn.1",12.62,7.61,32.223,"up",0.000254781382624586,0.00165203710249036,null,null,"chr19","+",null,"Noncoding",28368994,28369230,30,null,"NA","NONRATT027330","NONCODE","Non-coding transcript identified by NONCODE","chr19",100,100,{"$nulls":24},"NonCoding",12.26,13.22,12.37,7.83,7.01,8]
["TC0100002748.rn.1",9.07,7.77,2.462,"up",0.000255077460747889,0.00165213810094326,"LOC102551962","uncharacterized LOC102551962","chr1","+","mRNARGD7544313_1","Noncoding",204514065,204525640,30,null,"NA","mRNARGD7544313_1","Rat Genome Database","uncharacterized LOC102551962","chr1",100,100,{"$nulls":24},"NonCoding",9.44,9.02,8.76,7.57,7.91,7.83]
["TC1000000451.rn.1",5.88,3.6,4.857,"up",0.000255227729737171,0.00165246399301692,"NONMMUG005924","Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1100001498.mm","Noncoding",31590219,31591416,30,null,"NA","MTA_TR1100001498.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",5.39,5.61,6.65,3.49,3.94,3.38]
["TC0300003286.rn.1",4.33,5.39,-2.085,"down",0.000255792701133548,0.00165365649847073,"jawchy","Unannotated AceView Transcript","chr3","-","jawchy.aSep08","Noncoding",58167462,58173472,30,null,"NA","jawchy.aSep08","Ace View","Unannotated AceView Transcript","chr3",100,100,{"$nulls":24},"NonCoding",4.32,4.25,4.42,5.78,5.19,5.19]
["TC1200001160.rn.1",5.73,4.37,2.567,"up",0.000256380478900639,0.00165576028819963,"NONMMUG034189","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","-","MTA_TR0500006120.mm","Noncoding",15388140,15389088,30,null,"NA","MTA_TR0500006120.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",5.78,5.59,5.82,4.14,4.12,4.84]
["TC0X00001609.rn.1",13.43,11.51,3.784,"up",0.0002570414367914,0.00165760171375884,"MGI:5011713","PREDICTED:  predicted gene, 19528, transcript variant 1 (Gm19528), miscRNA.","chrX","-","MTA_TR0X00004721.mm","Noncoding",28593397,28595395,30,null,"NA","MTA_TR0X00004721.mm","MTA2Rn6","PREDICTED:  predicted gene, 19528, transcript variant 1 (Gm19528), miscRNA.","chrX",100,100,{"$nulls":24},"NonCoding",13.54,13.21,13.55,11.78,11.91,10.83]
["TC0800002840.rn.1",11.96,10.98,1.972,"up",0.000257682759322485,0.00165908347375496,null,null,"chr8","-",null,"Pseudogene",73621026,73621339,30,null,"NA","ENSRNOT00000008998","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:77950752:77951065:-1 gene:ENSRNOG00000006879 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",12.17,11.78,11.93,10.93,11.24,10.76]
["TC0900002525.rn.1",7.12,5.61,2.848,"up",0.000257785171217693,0.00165912790263896,"NONMMUG001422","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR0100009076.mm","Noncoding",103153150,103154846,30,null,"NA","MTA_TR0100009076.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",6.91,7.1,7.34,5.5,5.53,5.79]
["TC0200000107.rn.1",4.07,4.67,-1.516,"down",0.000258791867467198,0.00166499019621211,"RGD1559647","similar to Psmc6 protein","chr2","+","mRNARGD6763658_1","Pseudogene",14262961,14282566,40,null,"NA","mRNARGD6763658_1","Rat Genome Database","similar to Psmc6 protein","chr2",100,100,{"$nulls":24},"Pseudogene",3.92,4.14,4.14,4.59,4.81,4.62]
["TC0300001107.rn.1",6.9,7.41,-1.424,"down",0.000259400314489,0.00166717637456007,"NONMMUG023713","Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200014306.mm","Noncoding",79254414,79257502,30,null,"NA","MTA_TR0200014306.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",6.91,6.88,6.91,7.28,7.52,7.44]
["TC1900000552.rn.1",7.45,5.67,3.434,"up",0.000259522914515327,0.00166717637456007,"KnowTID_00007372","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr19","+","MTA_TR0800008934.mm","Noncoding",40453949,40454351,30,null,"NA","MTA_TR0800008934.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr19",100,100,{"$nulls":24},"NonCoding",6.85,7.65,7.84,5.67,5.43,5.92]
["TC0400000230.rn.1",4.51,5.41,-1.866,"down",0.000262017757187663,0.00167929115851883,"flawer","Unannotated AceView Transcript","chr4","+","flawer.aSep08","Noncoding",21757746,21759611,59,null,"NA","flawer.aSep08","Ace View","Unannotated AceView Transcript","chr4",100,100,{"$nulls":24},"NonCoding",4.59,4.35,4.59,5.52,5.42,5.29]
["TC0700003109.rn.1",9.54,7.51,4.084,"up",0.000262174752282716,0.00167929115851883,"NONMMUG014495","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004485.mm","Noncoding",90195801,90196886,30,null,"NA","MTA_TR1500004485.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",9.67,9.59,9.37,7.26,7.12,8.16]
["TC0100005275.rn.1",3.67,4.11,-1.357,"down",0.000262562696045657,0.00168089872248271,"LOC690124","similar to Protein C9orf82","chr1","-","mRNARGD6608543_1","Pseudogene",94772009,94778906,24,null,"NA","mRNARGD6608543_1","Rat Genome Database","similar to Protein C9orf82","chr1",100,100,{"$nulls":24},"Pseudogene",3.66,3.72,3.62,3.98,4.18,4.18]
["TC0300000849.rn.1",5.68,7.7,-4.056,"down",0.000263723859942225,0.00168424528347661,"ENSMUSG00000085838","predicted gene 13706, Non-coding transcript identified by NONCODE: Antisense, putative transcript","chr3","+","MTA_TR0200003660.mm","Noncoding",60553858,60555891,30,null,"NA","MTA_TR0200003660.mm","MTA2Rn6","predicted gene 13706, Non-coding transcript identified by NONCODE: Antisense, putative transcript","chr3",100,100,{"$nulls":24},"NonCoding",5.7,5.67,5.67,7.77,7.77,7.55]
["TC0900001537.rn.1",4.42,3.69,1.659,"up",0.0002644303385315,0.00168813649784296,"NONMMUG018468","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR1700003536.mm","Noncoding",15431565,15432403,30,null,"NA","MTA_TR1700003536.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",4.57,4.17,4.53,3.76,3.65,3.66]
["TC0200004259.rn.1",4.71,5.2,-1.404,"down",0.000265278718844184,0.00168924088470416,"charshee","Unannotated AceView Transcript","chr2","-","charshee.aSep08","Noncoding",198770510,198772726,40,null,"NA","charshee.aSep08","Ace View","Unannotated AceView Transcript","chr2",100,100,{"$nulls":24},"NonCoding",4.71,4.62,4.81,5.12,5.17,5.32]
["TC0200003074.rn.1",13.01,11.94,2.099,"up",0.000266820699166659,0.00169576067815849,null,null,"chr2","-",null,"Pseudogene",60844741,60845296,30,null,"NA","ENSRNOT00000033369","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:83834741:83835296:1 gene:ENSRNOG00000050839 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",12.98,12.99,13.06,11.95,11.95,11.91]
["TC0600002244.rn.1",11.7,10.56,2.204,"up",0.000266893655752997,0.00169576067815849,"LOC690733","similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38)","chr6","-","LOC690733.aSep08-unspliced","Pseudogene",47705459,47706631,30,null,"NA","LOC690733.aSep08-unspliced","Ace View","similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38)","chr6",100,100,{"$nulls":24},"Pseudogene",11.94,11.75,11.4,10.57,10.71,10.41]
["TC0200000848.rn.1",11.68,10.83,1.803,"up",0.000267187074067136,0.00169700426457778,null,null,"chr2","+",null,"Pseudogene",104170525,104171181,30,null,"NA","ENSRNOT00000075816","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:123892553:123893209:1 gene:ENSRNOG00000050122 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",11.88,11.67,11.5,10.63,10.78,11.07]
["TC1300001293.rn.1",4.61,5.75,-2.204,"down",0.000270147176439139,0.00170830964758802,"NONMMUG001623","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","-","MTA_TR0100009438.mm","Noncoding",39465807,39469331,30,null,"NA","MTA_TR0100009438.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",4.44,4.69,4.7,5.58,5.72,5.96]
["TC0X00001553.rn.1",10.43,9.43,2,"up",0.00027156318519016,0.00171272816606759,"LOC685191","similar to aplysia ras-related homolog A2","chrX","-","LOC685191.aSep08-unspliced","Pseudogene",19913715,19914450,30,null,"NA","LOC685191.aSep08-unspliced","Ace View","similar to aplysia ras-related homolog A2","chrX",100,100,{"$nulls":24},"Pseudogene",10.6,10.37,10.31,9.61,9.44,9.25]
["TC0600002113.rn.1",5.02,3.92,2.144,"up",0.000275179981715687,0.00172415120616347,"NCBI_Gene:100862277","PREDICTED:  uncharacterized LOC100862277 (LOC100862277), miscRNA.","chr6","-","MTA_TR1200004032.mm","Noncoding",33899037,33907409,30,null,"NA","MTA_TR1200004032.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862277 (LOC100862277), miscRNA.","chr6",100,100,{"$nulls":24},"NonCoding",5.41,4.99,4.66,3.92,3.99,3.85]
["TC0200001629.rn.1",4.26,5.25,-1.986,"down",0.000276861304157457,0.00172874109076894,"KnowTID_00004803","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR0300002648.mm","Noncoding",192000867,192003175,30,null,"NA","MTA_TR0300002648.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.2,4.32,4.25,5.09,5.21,5.44]
["TC0600003449.rn.1",6.1,8.31,-4.627,"down",0.000277293184401445,0.00173019393183818,"LOC102548847","uncharacterized LOC102548847","chr6","-","NR_110712","Noncoding",144381740,144384615,30,null,102548847,"NR_110712","RefSeq","Rattus norvegicus uncharacterized LOC102548847 (LOC102548847), long non-coding RNA.","chr6",100,100,{"$nulls":24},"NonCoding",5.71,6.12,6.46,8.01,8.59,8.34]
["TC0500001765.rn.1",4.12,4.71,-1.505,"down",0.00028058815097035,0.00174137076473953,"LOC102555767","uncharacterized LOC102555767","chr5","+","mRNARGD7664699_1","Noncoding",157526345,157531409,30,null,"NA","mRNARGD7664699_1","Rat Genome Database","uncharacterized LOC102555767","chr5",100,100,{"$nulls":24},"NonCoding",4.07,4.13,4.16,4.62,4.91,4.6]
["TC2000001540.rn.1",9.45,8.16,2.445,"up",0.000281105918369938,0.00174396103857293,null,null,"chr20","-",null,"Noncoding",31047024,31049710,30,null,"NA","NONRATT034065","NONCODE","Non-coding transcript identified by NONCODE","chr20",100,100,{"$nulls":24},"NonCoding",9.57,9.15,9.62,8.29,8.27,7.93]
["TC0200001265.rn.1",9.22,9.76,-1.454,"down",0.000282308696329904,0.00174875407097608,"Spin3","spindlin family member 3","chr2","+","mRNARGD6617355_1","Pseudogene",155282027,155284312,40,null,"NA","mRNARGD6617355_1","Rat Genome Database","spindlin family member 3","chr2",100,100,{"$nulls":24},"Pseudogene",9.26,9.25,9.15,9.77,9.74,9.78]
["TC0300005087.rn.1",5.54,6.39,-1.803,"down",0.000282381853035974,0.00174875407097608,"Wfdc2","uncharacterized LOC102554345","chr3","+","mRNARGD7536496_1","Noncoding",161031584,161045841,90,null,"NA","mRNARGD7536496_1","Rat Genome Database","uncharacterized LOC102554345","chr3",100,100,{"$nulls":24},"NonCoding",5.47,5.49,5.67,6.41,6.4,6.36]
["TC1500000783.rn.1",6.15,6.83,-1.602,"down",0.000289179286072544,0.00177628478725819,"NCBI_Gene:100861616","PREDICTED:  uncharacterized LOC100861616, transcript variant 2 (LOC100861616), miscRNA.","chr15","+","MTA_TR1400003326.mm","Noncoding",52348962,52358651,30,null,"NA","MTA_TR1400003326.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861616, transcript variant 2 (LOC100861616), miscRNA.","chr15",100,100,{"$nulls":24},"NonCoding",6.02,6.18,6.26,6.72,6.82,6.96]
["TC0X00001317.rn.1",8.02,5.46,5.897,"up",0.000289534519211092,0.00177783815242696,"NCBI_Gene:100861843","PREDICTED:  uncharacterized LOC100861843 (LOC100861843), miscRNA.","chrX","+","MTA_TR0X00006639.mm","Noncoding",157315634,157319502,30,null,"NA","MTA_TR0X00006639.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861843 (LOC100861843), miscRNA.","chrX",100,100,{"$nulls":24},"NonCoding",7.94,7.82,8.3,5.6,5.74,5.04]
["TC0500003895.rn.1",4.51,4.87,-1.283,"down",0.000290433903117273,0.00178210078807847,"NONMMUG031078","Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400013174.mm","Noncoding",156342271,156343408,30,null,"NA","MTA_TR0400013174.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",4.53,4.49,4.5,4.91,4.92,4.79]
["TC0800001155.rn.1",6.31,7.06,-1.682,"down",0.000291549638888262,0.0017870532029386,null,null,"chr8","+",null,"Pseudogene",85413143,85413536,30,null,"NA","ENSRNOT00000073386","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:84978006:84978399:1 gene:ENSRNOG00000050962 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",6.15,6.3,6.47,7.23,7.05,6.9]
["TC1500001491.rn.1",4.38,5.42,-2.056,"down",0.000292102065540558,0.00178829074089641,"NONMMUG012840","Non-coding transcript identified by NONCODE: Antisense","chr15","-","MTA_TR1400005936.mm","Noncoding",24332189,24334824,30,null,"NA","MTA_TR1400005936.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr15",100,100,{"$nulls":24},"NonCoding",4.44,4.26,4.45,5.17,5.73,5.37]
["TC0300002744.rn.1",5.02,4.36,1.58,"up",0.000292864009257813,0.00179005654638194,"LOC102554365","uncharacterized LOC102554365","chr3","-","mRNARGD7574533_1","Noncoding",4898353,4900923,30,null,"NA","mRNARGD7574533_1","Rat Genome Database","uncharacterized LOC102554365","chr3",100,100,{"$nulls":24},"NonCoding",4.96,4.96,5.15,4.35,4.2,4.54]
["TC0100001231.rn.1",5.8,7.21,-2.657,"down",0.000293650192712979,0.00179296924345067,"LOC100912964","zinc finger protein 567-like","chr1","+","mRNARGD7607508_1","Pseudogene",88603258,88604487,30,null,"NA","mRNARGD7607508_1","Rat Genome Database","zinc finger protein 567-like","chr1",100,100,{"$nulls":24},"Pseudogene",6.07,5.5,5.83,7.19,6.9,7.54]
["TC1400000701.rn.1",7.1,5.81,2.445,"up",0.000297220802344249,0.0018094463833955,"NONMMUG032379","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500008413.mm","Noncoding",69834946,69837936,30,null,"NA","MTA_TR0500008413.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",6.99,7.02,7.29,5.75,5.47,6.2]
["TC0100005650.rn.1",5.74,7.17,-2.694,"down",0.000301311231424994,0.0018224503485667,"NONMMUG038200","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR0700011802.mm","Noncoding",122979907,122982692,30,null,"NA","MTA_TR0700011802.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",5.64,5.63,5.94,7.46,7.44,6.62]
["TC0600000280.rn.1",3.91,4.33,-1.338,"down",0.000303261971882017,0.00182978941075461,"LOC100364919","hypothetical protein LOC100364919","chr6","+","mRNARGD6579961_1","Noncoding",26407428,26423879,30,null,"NA","mRNARGD6579961_1","Rat Genome Database","hypothetical protein LOC100364919","chr6",100,100,{"$nulls":24},"NonCoding",3.94,3.87,3.93,4.32,4.36,4.31]
["TC0300003849.rn.1",3.64,4.74,-2.144,"down",0.000305417792700291,0.00183641830287184,"NONMMUG024142","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200015181.mm","Noncoding",101918642,101920577,30,null,"NA","MTA_TR0200015181.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",3.72,3.42,3.78,4.58,4.6,5.04]
["TC1700001138.rn.1",7.71,4.77,7.674,"up",0.000305546476623206,0.00183655634789679,"NONMMUG022196","Non-coding transcript identified by NONCODE: Exonic","chr17","+","MTA_TR0200000848.mm","Noncoding",89349436,89351709,30,null,"NA","MTA_TR0200000848.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Exonic","chr17",100,100,{"$nulls":24},"NonCoding",7,7.72,8.42,4.59,5.03,4.7]
["TC1400001441.rn.1",5.73,4.82,1.879,"up",0.000306457424286875,0.00184012164441317,"LOC102547403","uncharacterized LOC102547403","chr14","-","mRNARGD7611600_1","Noncoding",14295879,14298678,50,null,"NA","mRNARGD7611600_1","Rat Genome Database","uncharacterized LOC102547403","chr14",100,100,{"$nulls":24},"NonCoding",5.77,5.48,5.93,4.86,4.87,4.73]
["TC0300000595.rn.1",7.7,5.37,5.028,"up",0.000310189156114176,0.0018548350536521,"NONMMUG023001","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002845.mm","Noncoding",38456646,38460662,30,null,"NA","MTA_TR0200002845.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",7.15,7.98,7.98,4.92,5.17,6.02]
["TC1000001138.rn.1",4.26,4.77,-1.424,"down",0.000312676712688587,0.00186265678193191,"NONMMUG006851","Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1100012305.mm","Noncoding",64862255,64862823,30,null,"NA","MTA_TR1100012305.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",4.25,4.24,4.3,4.92,4.69,4.69]
["TC0200001844.rn.1",13.64,13.07,1.485,"up",0.000314207710458527,0.0018679336544747,null,null,"chr2","+",null,"Pseudogene",203528146,203528621,30,null,"NA","ENSRNOT00000031920","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:222973957:222974432:1 gene:ENSRNOG00000023401 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",13.81,13.56,13.56,13.07,13.08,13.07]
["TC0X00001919.rn.1",4.95,3.98,1.959,"up",0.000315294339831686,0.00187103699312614,"NONMMUG045439","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00007443.mm","Noncoding",68516634,68520528,30,null,"NA","MTA_TR0X00007443.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",4.89,4.89,5.08,3.94,3.9,4.09]
["TC1100001610.rn.1",6.81,5.57,2.362,"up",0.000316478974582697,0.00187545759461803,"NONMMUG016547","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","-","MTA_TR1600002385.mm","Noncoding",62109851,62111915,30,null,"NA","MTA_TR1600002385.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",6.66,6.66,7.12,5.45,5.56,5.69]
["TC0300003985.rn.1",8.64,9.8,-2.235,"down",0.000318094025166906,0.00187945962965113,"NCBI_Gene:100862335","PREDICTED:  uncharacterized LOC100862335, transcript variant 2 (LOC100862335), miscRNA.","chr3","-","MTA_TR0200015529.mm","Noncoding",111384130,111389991,30,null,"NA","MTA_TR0200015529.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862335, transcript variant 2 (LOC100862335), miscRNA.","chr3",100,100,{"$nulls":24},"NonCoding",8.6,8.51,8.81,9.61,9.89,9.89]
["TC0100000482.rn.1",10.36,8.68,3.204,"up",0.000321224679018762,0.00189182715856026,"KnowTID_00003763","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Sense No Exonic, Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR1700000106.mm","Noncoding",46756890,46757168,30,null,"NA","MTA_TR1700000106.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Sense No Exonic, Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",10.07,10.9,10.1,8.74,8.45,8.84]
["TC1000003113.rn.1",12.29,10.85,2.713,"up",0.000322025749365599,0.00189367274618477,"NCBI_Gene:100861682","PREDICTED:  uncharacterized LOC100861682, transcript variant 2 (LOC100861682), miscRNA.","chr10","-","MTA_TR1100011558.mm","Noncoding",56601468,56604222,30,null,"NA","MTA_TR1100011558.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861682, transcript variant 2 (LOC100861682), miscRNA.","chr10",100,100,{"$nulls":24},"NonCoding",12.52,12.01,12.34,10.77,11.14,10.65]
["TC1100000110.rn.1",7.16,6.14,2.028,"up",0.000322468959882375,0.00189499604266466,"KnowTID_00003190","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003019.mm","Noncoding",16068861,16070884,30,null,"NA","MTA_TR1600003019.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",6.91,7.13,7.45,6.13,6.27,6.02]
["TC0X00000740.rn.1",9.99,10.99,-2,"down",0.000322810217202396,0.0018955938538543,"RGD1563242","similar to riboflavin kinase","chrX","+","RGD1563242.aSep08-unspliced","Pseudogene",79489410,79490127,30,null,"NA","RGD1563242.aSep08-unspliced","Ace View","similar to riboflavin kinase","chrX",100,100,{"$nulls":24},"Pseudogene",10.15,9.73,10.08,10.88,11.31,10.77]
["TC1100001512.rn.1",4.83,6.2,-2.585,"down",0.000323477188622201,0.00189667960209808,"NONMMUG016655","Non-coding transcript identified by NONCODE: Linc","chr11","-","MTA_TR1600002602.mm","Noncoding",53656676,53663774,30,null,"NA","MTA_TR1600002602.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",4.99,4.58,4.93,5.91,6.37,6.32]
["TC0600002813.rn.1",4.71,5.41,-1.625,"down",0.000329721899985435,0.00191513211864242,"NONMMUG009465","Non-coding transcript identified by NONCODE: Antisense","chr6","-","MTA_TR1200005679.mm","Noncoding",106104376,106105674,30,null,"NA","MTA_TR1200005679.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",4.63,4.71,4.8,5.42,5.44,5.38]
["TC0700002513.rn.1",6.75,7.49,-1.67,"down",0.000332099509428622,0.0019229668594282,"NCBI_Gene:100861832","PREDICTED:  uncharacterized LOC100861832 (LOC100861832), miscRNA.","chr7","-","MTA_TR1000008743.mm","Noncoding",35130655,35167400,30,null,"NA","MTA_TR1000008743.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861832 (LOC100861832), miscRNA.","chr7",100,100,{"$nulls":24},"NonCoding",6.91,6.59,6.76,7.45,7.54,7.48]
["TC0300000683.rn.1",5.44,6.87,-2.694,"down",0.000332368015331339,0.00192323943848124,"NONMMUG023186","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200003140.mm","Noncoding",49168289,49171039,30,null,"NA","MTA_TR0200003140.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",5.53,5.52,5.27,6.68,6.73,7.2]
["TC0300003285.rn.1",5.17,7.58,-5.315,"down",0.000332652441467289,0.00192424427596679,"jarchy","Unannotated AceView Transcript","chr3","-","jarchy.aSep08","Noncoding",58149338,58150822,30,null,"NA","jarchy.aSep08","Ace View","Unannotated AceView Transcript","chr3",100,100,{"$nulls":24},"NonCoding",4.89,5.38,5.25,7.12,7.78,7.84]
["TC0600000078.rn.1",3.78,4.47,-1.613,"down",0.000334121255139136,0.00192824904964943,"NONMMUG019034","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr6","+","MTA_TR1700004546.mm","Noncoding",6780501,6786558,50,null,"NA","MTA_TR1700004546.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr6",100,100,{"$nulls":24},"NonCoding",3.83,3.77,3.75,4.54,4.35,4.53]
["TC0100005066.rn.1",4.79,5.59,-1.741,"down",0.00033593301497869,0.00193250177618197,"NONMMUG037564","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR0700009532.mm","Noncoding",85118808,85130652,30,null,"NA","MTA_TR0700009532.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",4.65,4.7,5.02,5.49,5.47,5.8]
["TC1700002021.rn.1",3.68,4.52,-1.79,"down",0.000338126054968783,0.00193911776192233,"NONMMUG010259","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr17","-","MTA_TR1300003918.mm","Noncoding",63985812,63988247,30,null,"NA","MTA_TR1300003918.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr17",100,100,{"$nulls":24},"NonCoding",3.8,3.51,3.73,4.54,4.47,4.56]
["TC1300001868.rn.1",5.19,5.94,-1.682,"down",0.000339235395431939,0.0019435547671663,"LOC102554262","uncharacterized LOC102554262","chr13","-","mRNARGD7508627_1","Noncoding",87282646,87299866,30,null,"NA","mRNARGD7508627_1","Rat Genome Database","uncharacterized LOC102554262","chr13",100,100,{"$nulls":24},"NonCoding",5.1,5.26,5.2,5.69,6.14,5.98]
["TC0700002701.rn.1",5.47,6.62,-2.219,"down",0.000339974876571073,0.00194586608926396,"NONMMUG004702","Non-coding transcript identified by NONCODE: Antisense","chr7","-","MTA_TR1000009121.mm","Noncoding",54978435,54980819,49,null,"NA","MTA_TR1000009121.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",5.41,5.6,5.41,6.59,6.63,6.63]
["TC0200000163.rn.1",7.8,10.23,-5.389,"down",0.000341541267892429,0.00195142391599176,"KnowTID_00001907","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1300002881.mm","Noncoding",23018358,23020490,30,null,"NA","MTA_TR1300002881.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",7.62,7.84,7.93,10.14,10.21,10.33]
["TC0100005346.rn.1",4.53,5.58,-2.071,"down",0.000345628747050648,0.00196656304127639,"gorflu","Unannotated AceView Transcript","chr1","-","gorflu.aSep08","Noncoding",100428025,100435918,60,null,"NA","gorflu.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"NonCoding",4.46,4.4,4.73,5.64,5.57,5.52]
["TC1000004257.rn.1",4.45,5.24,-1.729,"down",0.000347812222621718,0.00197208907711278,"LOC102546447","uncharacterized LOC102546447","chr10","-","mRNARGD7638588_1","Noncoding",109422433,109424184,30,null,"NA","mRNARGD7638588_1","Rat Genome Database","uncharacterized LOC102546447","chr10",100,100,{"$nulls":24},"NonCoding",4.63,4.53,4.2,5.16,5.42,5.13]
["TC0100005045.rn.1",6.26,9.75,-11.236,"down",0.000347848767041251,0.00197208907711278,"NONMMUG037521","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR0700009448.mm","Noncoding",84333749,84335306,30,null,"NA","MTA_TR0700009448.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",6.63,5.92,6.23,9.61,10.21,9.42]
["TC2000001575.rn.1",13.77,14.54,-1.705,"down",0.000350340926378935,0.00197975674434889,"RGD1559704","INTERACTS WITH ammonium chloride","chr20","-","mRNARGD6737357_1","Pseudogene",32600727,32601790,30,null,"NA","mRNARGD6737357_1","Rat Genome Database","INTERACTS WITH ammonium chloride","chr20",100,100,{"$nulls":24},"Pseudogene",13.82,13.67,13.81,14.58,14.69,14.35]
["TC1600001571.rn.1",6.28,7,-1.647,"down",0.000353387734179939,0.00199114444710987,null,null,"chr16","-",null,"Pseudogene",38651762,38652764,30,null,"NA","ENSRNOT00000024373","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:38441084:38442086:-1 gene:ENSRNOG00000018120 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",6.28,6.44,6.12,6.83,7.14,7.02]
["TC1200001398.rn.1",4.45,3.72,1.659,"up",0.000355318296242784,0.0019981334166505,"NONMMUG033978","Non-coding transcript identified by NONCODE: Antisense","chr12","-","MTA_TR0500005402.mm","Noncoding",25502791,25506300,33,null,"NA","MTA_TR0500005402.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr12",100,100,{"$nulls":24},"NonCoding",4.48,4.43,4.45,3.52,3.97,3.68]
["TC0700000662.rn.1",5.19,4.77,1.338,"up",0.00036511006554681,0.00203265029786381,null,null,"chr7","+",null,"Pseudogene",51645054,51645960,30,null,"NA","ENSRNOT00000041959","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:51656166:51657072:1 gene:ENSRNOG00000046429 gene_biotype:pseudogene transcript_biotype:pseudogene","chr7",100,100,{"$nulls":24},"Pseudogene",5.29,5.2,5.07,4.72,4.78,4.81]
["TC0700003112.rn.1",8.7,7.09,3.053,"up",0.000367320329253078,0.00203976494916662,"NONMMUG014498","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004488.mm","Noncoding",90246319,90247785,30,null,"NA","MTA_TR1500004488.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",8.61,8.78,8.72,7.07,6.78,7.41]
["TC1900001612.rn.1",4.7,3.4,2.462,"up",0.000368298700206346,0.00204204172399759,"MGI:5011747","PREDICTED:  predicted gene, 19562 (Gm19562), miscRNA.","chr19","-","MTA_TR0800009382.mm","Noncoding",54329321,54336633,30,null,"NA","MTA_TR0800009382.mm","MTA2Rn6","PREDICTED:  predicted gene, 19562 (Gm19562), miscRNA.","chr19",100,100,{"$nulls":24},"NonCoding",4.51,4.46,5.14,3.47,3.37,3.36]
["TC0300003057.rn.1",6.96,5.81,2.219,"up",0.000369694870284369,0.00204772080253464,"NONMMUG022868","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200012493.mm","Noncoding",29905301,29906822,30,null,"NA","MTA_TR0200012493.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",7.14,6.77,6.96,5.79,5.66,5.99]
["TC0800001205.rn.1",6.41,7.17,-1.693,"down",0.000369802955645125,0.00204772080253464,"LOC679916","similar to platelet-activating factor acetylhydrolase alpha 2 subunit","chr8","+","mRNARGD6746661_1","Pseudogene",90726514,90727726,30,null,"NA","mRNARGD6746661_1","Rat Genome Database","similar to platelet-activating factor acetylhydrolase alpha 2 subunit","chr8",100,100,{"$nulls":24},"Pseudogene",6.28,6.62,6.34,7.22,7.12,7.18]
["TC0200002763.rn.1",5.18,7.32,-4.408,"down",0.00037299555862559,0.00205792935630916,"LOC102546726","uncharacterized LOC102546726","chr2","-","mRNARGD7497061_1","Noncoding",32526648,32741269,100,null,"NA","mRNARGD7497061_1","Rat Genome Database","uncharacterized LOC102546726","chr2",100,100,{"$nulls":24},"NonCoding",5.4,5.02,5.12,7.04,7.58,7.35]
["TC0700002739.rn.1",10.32,9.53,1.729,"up",0.000373317964738707,0.00205792935630916,null,null,"chr7","-",null,"Pseudogene",59919997,59920391,30,null,"NA","ENSRNOT00000039294","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:59924843:59925237:-1 gene:ENSRNOG00000045778 gene_biotype:pseudogene transcript_biotype:pseudogene","chr7",100,100,{"$nulls":24},"Pseudogene",10.49,10.17,10.29,9.46,9.7,9.44]
["TC0200003866.rn.1",4.87,6.4,-2.888,"down",0.000373415078641786,0.00205792935630916,"KnowTID_00005107","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300006916.mm","Noncoding",170446381,170448383,30,null,"NA","MTA_TR0300006916.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.66,5.17,4.78,6.26,6.51,6.44]
["TC0900001216.rn.1",5.09,6.25,-2.235,"down",0.000373619603115443,0.00205840346518185,"LOC102553020","uncharacterized LOC102553020","chr9","+","mRNARGD7610061_1","Noncoding",104350529,104361867,30,null,"NA","mRNARGD7610061_1","Rat Genome Database","uncharacterized LOC102553020","chr9",100,100,{"$nulls":24},"NonCoding",4.93,5.45,4.88,6.37,6.03,6.36]
["TC1300000723.rn.1",4.09,4.96,-1.828,"down",0.000376441790074674,0.00206972578506907,"LOC102547237","uncharacterized LOC102547237","chr13","+","mRNARGD7527480_1","Noncoding",87746488,87751138,30,null,"NA","mRNARGD7527480_1","Rat Genome Database","uncharacterized LOC102547237","chr13",100,100,{"$nulls":24},"NonCoding",4.28,3.91,4.09,4.83,5.08,4.96]
["TC0200004427.rn.1",5.12,7.33,-4.627,"down",0.00037881036279936,0.00207892610780597,"NONMMUG027597","Non-coding transcript identified by NONCODE: Antisense, Non-coding transcript identified by Luo, et al.","chr2","-","MTA_TR0300008930.mm","Noncoding",209844749,209849614,30,null,"NA","MTA_TR0300008930.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense, Non-coding transcript identified by Luo, et al.","chr2",100,100,{"$nulls":24},"NonCoding",5.32,4.69,5.36,6.87,7.79,7.32]
["TC0500001849.rn.1",5.07,6.19,-2.173,"down",0.000380111272097165,0.00208293782574128,"LOC102554076","uncharacterized LOC102554076","chr5","+","mRNARGD7709752_1","Noncoding",161251143,161257991,40,null,"NA","mRNARGD7709752_1","Rat Genome Database","uncharacterized LOC102554076","chr5",100,100,{"$nulls":24},"NonCoding",5.01,5.14,5.06,6.15,6.21,6.21]
["TC0200002464.rn.1",5.63,7.91,-4.857,"down",0.000380862495824612,0.00208410866910311,"KnowTID_00004914","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR0300005276.mm","Noncoding",264898927,264901479,30,null,"NA","MTA_TR0300005276.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",5.71,5.68,5.51,7.88,8.19,7.65]
["TC0100004092.rn.1",8.23,7.48,1.682,"up",0.000384494088148438,0.00210011540320795,"RGD1565679","similar to ribosomal protein L27a","chr1","-","mRNARGD6759299_1","Pseudogene",15389077,15389934,40,null,"NA","mRNARGD6759299_1","Rat Genome Database","similar to ribosomal protein L27a","chr1",100,100,{"$nulls":24},"Pseudogene",8.26,8.29,8.15,7.51,7.58,7.34]
["TC0700002668.rn.1",9.72,6.86,7.26,"up",0.000385499363540586,0.00210166083312316,"NONMMUG004650","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1000009056.mm","Noncoding",52279912,52281204,30,null,"NA","MTA_TR1000009056.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",9.07,9.76,10.34,6.13,6.59,7.86]
["TC0500002513.rn.1",5.89,8.65,-6.774,"down",0.000385584772043263,0.00210166083312316,"NONMMUG028884","Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400008154.mm","Noncoding",51462794,51463919,30,null,"NA","MTA_TR0400008154.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",5.93,5.99,5.75,8.74,8.94,8.28]
["TC1600002055.rn.1",4.45,5.2,-1.682,"down",0.00038781486055781,0.00210904244623305,"LOC689486","hypothetical protein LOC689486","chr16","-","LOC689486.aSep08","Noncoding",83772567,83824279,70,null,"NA","LOC689486.aSep08","Ace View","hypothetical protein LOC689486","chr16",100,100,{"$nulls":24},"NonCoding",4.53,4.4,4.41,5.09,5.37,5.14]
["TC0400002017.rn.1",5.27,6.94,-3.182,"down",0.000388119159639147,0.00210904244623305,"NCBI_Gene:100862384","PREDICTED:  uncharacterized LOC100862384 (LOC100862384), miscRNA.","chr4","+","MTA_TR0600005667.mm","Noncoding",176701981,176708321,30,null,"NA","MTA_TR0600005667.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862384 (LOC100862384), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",5.05,5.08,5.69,6.98,7.23,6.62]
["TC0100002461.rn.1",7.02,7.61,-1.505,"down",0.000389803504959291,0.00211602396395245,null,null,"chr1","+",null,"Pseudogene",187634359,187635356,30,null,"NA","ENSRNOT00000024698","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:194587444:194588441:1 gene:ENSRNOG00000018332 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",7.08,7,6.97,7.73,7.65,7.44]
["TC0900000068.rn.1",5.65,8.5,-7.21,"down",0.000396349803443872,0.00213713873614075,null,null,"chr9","+",null,"Noncoding",8421517,8421730,30,null,"NA","NONRATT056084","NONCODE","Non-coding transcript identified by NONCODE","chr9",100,100,{"$nulls":24},"NonCoding",5.36,5.69,5.91,7.67,8.98,8.84]
["TC0800002416.rn.1",2.98,3.42,-1.357,"down",0.000397422824717036,0.00214104496831406,"MGI:3704333","PREDICTED:  predicted gene 10023 (Gm10023), miscRNA.","chr8","-","MTA_TR0900006942.mm","Noncoding",48800537,48802306,30,null,"NA","MTA_TR0900006942.mm","MTA2Rn6","PREDICTED:  predicted gene 10023 (Gm10023), miscRNA.","chr8",100,100,{"$nulls":24},"NonCoding",3.1,2.96,2.89,3.44,3.49,3.33]
["TC0600001796.rn.1",5.78,7.86,-4.228,"down",0.000406215542702218,0.00217587733341974,"NONMMUG019035","Non-coding transcript identified by NONCODE: Linc","chr6","-","MTA_TR1700009546.mm","Noncoding",6780508,6782425,30,null,"NA","MTA_TR1700009546.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",5.63,5.44,6.27,7.96,7.88,7.74]
["TC1200001113.rn.1",5.45,5.96,-1.424,"down",0.000408072257512225,0.00218380258325473,"LOC102554879","uncharacterized LOC102554879","chr12","-","mRNARGD7505190_1","Noncoding",12830999,12838654,40,null,"NA","mRNARGD7505190_1","Rat Genome Database","uncharacterized LOC102554879","chr12",100,100,{"$nulls":24},"NonCoding",5.31,5.52,5.52,5.94,5.88,6.06]
["TC0100001886.rn.1",4.91,5.69,-1.717,"down",0.000410676692260091,0.00219233706860788,"LOC102556224","uncharacterized LOC102556224","chr1","+","mRNARGD7615100_1","Noncoding",143354081,143361938,60,null,"NA","mRNARGD7615100_1","Rat Genome Database","uncharacterized LOC102556224","chr1",100,100,{"$nulls":24},"NonCoding",5.03,4.84,4.87,5.93,5.72,5.41]
["TC0200003374.rn.1",5.09,6.63,-2.908,"down",0.000413885520367969,0.00220202308554732,"KnowTID_00004944","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300005658.mm","Noncoding",111051665,111057195,30,null,"NA","MTA_TR0300005658.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",5.25,5.01,5,6.29,6.68,6.93]
["TC1500001920.rn.1",5.56,7.11,-2.928,"down",0.000415175500051348,0.0022059952311944,"LOC102553895","uncharacterized LOC102553895","chr15","-","mRNARGD7549582_1","Noncoding",47460593,47473772,30,null,"NA","mRNARGD7549582_1","Rat Genome Database","uncharacterized LOC102553895","chr15",100,100,{"$nulls":24},"NonCoding",5.83,5.43,5.43,7.07,7.16,7.1]
["TC0300002071.rn.1",9.36,9.88,-1.434,"down",0.000416325870338678,0.00220856153205557,"LOC689804","similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)","chr3","+","LOC689804.aSep08-unspliced","Pseudogene",149210831,149212421,30,null,"NA","LOC689804.aSep08-unspliced","Ace View","similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)","chr3",100,100,{"$nulls":24},"Pseudogene",9.28,9.49,9.32,10.01,9.89,9.75]
["TC1500001666.rn.1",10.02,8.74,2.428,"up",0.000417580551056194,0.00221055828074047,"RGD1566241","similar to ribosomal protein S24","chr15","-","mRNARGD6724667_1","Pseudogene",32916859,32917256,40,null,"NA","mRNARGD6724667_1","Rat Genome Database","similar to ribosomal protein S24","chr15",100,100,{"$nulls":24},"Pseudogene",10.17,10.09,9.79,9.09,8.87,8.27]
["TC1000003556.rn.1",17.77,15.24,5.776,"up",0.000417885918230116,0.0022111167485761,null,null,"chr10","-",null,"Noncoding",78149534,78149750,30,null,"NA","NONRATT011860","NONCODE","Non-coding transcript identified by NONCODE","chr10",100,100,{"$nulls":24},"NonCoding",17.74,17.89,17.67,14.66,14.72,16.34]
["TC1500000253.rn.1",14.68,13.81,1.828,"up",0.000420560769179251,0.00221986056560704,null,null,"chr15","+",null,"Noncoding",24789422,24789484,30,null,"NA","NONRATT020248","NONCODE","Non-coding transcript identified by NONCODE","chr15",100,100,{"$nulls":24},"NonCoding",14.67,14.69,14.68,13.88,14.04,13.5]
["TC1000000130.rn.1",6.47,7.73,-2.395,"down",0.000423632616318325,0.00222930087187689,"uc007yau.1","cDNA, clone:Y0G0121E12, strand:unspecified.","chr10","+","MTA_TR1600003895.mm","Noncoding",10833299,10833917,30,null,"NA","MTA_TR1600003895.mm","MTA2Rn6","cDNA, clone:Y0G0121E12, strand:unspecified.","chr10",100,100,{"$nulls":24},"NonCoding",6.58,6.24,6.58,7.69,8.02,7.48]
["TC2000001175.rn.1",6.54,4.57,3.918,"up",0.000427233096100783,0.00224416876696907,"uc008bia.2","RNA for germline small RNA gsRNA292, complete sequence.","chr20","-","MTA_TR1700006202.mm","Noncoding",6638154,6638178,1,null,"NA","MTA_TR1700006202.mm","MTA2Rn6","RNA for germline small RNA gsRNA292, complete sequence.","chr20",100,100,{"$nulls":24},"NonCoding",6.73,6.84,6.05,4.1,4.77,4.84]
["TC1200001131.rn.1",15.84,15.11,1.659,"up",0.0004288740132151,0.00225006659122909,"NONMMUG034221","Non-coding transcript identified by NONCODE: Antisense","chr12","-","MTA_TR0500006153.mm","Noncoding",13718906,13719301,30,null,"NA","MTA_TR0500006153.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr12",100,100,{"$nulls":24},"NonCoding",15.98,15.66,15.89,15.17,15.03,15.14]
["TC0800000857.rn.1",4.66,5.67,-2.014,"down",0.000429079973029885,0.00225046745516369,"leypor","Unannotated AceView Transcript","chr8","+","leypor.aSep08","Noncoding",65587095,65588151,30,null,"NA","leypor.aSep08","Ace View","Unannotated AceView Transcript","chr8",100,100,{"$nulls":24},"NonCoding",4.5,4.66,4.83,5.83,5.88,5.3]
["TC0100006549.rn.1",6.95,8.78,-3.555,"down",0.000431433091418323,0.00225667697411252,"KnowTID_00006904","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR0700014313.mm","Noncoding",191551709,191607587,30,null,"NA","MTA_TR0700014313.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",6.36,7.05,7.45,8.56,8.68,9.1]
["TC0400002699.rn.1",7.65,5.15,5.657,"up",0.00043190265276302,0.00225736472751648,null,null,"chr4","-",null,"Noncoding",64865710,64868509,30,null,"NA","NONRATT041212","NONCODE","Non-coding transcript identified by NONCODE","chr4",100,100,{"$nulls":24},"NonCoding",7.35,8.01,7.59,5.2,5.54,4.7]
["TC0200003565.rn.1",4.73,6.02,-2.445,"down",0.000433775478935588,0.00226260946284816,"NONMMUG026458","Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300006135.mm","Noncoding",127678093,127679806,30,null,"NA","MTA_TR0300006135.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.85,4.6,4.73,5.9,6.37,5.79]
["TC0400003420.rn.1",5.18,4.21,1.959,"up",0.000434452640938316,0.00226293158193088,"NONMMUG036104","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600009209.mm","Noncoding",129828228,129831689,30,null,"NA","MTA_TR0600009209.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",5.04,5.04,5.47,4.08,4.08,4.46]
["TC0500001045.rn.1",11.26,10.66,1.516,"up",0.000435872043399516,0.00226896411923674,null,null,"chr5","+",null,"Pseudogene",118299640,118300120,30,null,"NA","ENSRNOT00000075666","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:122232347:122232827:1 gene:ENSRNOG00000046511 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",11.31,11.34,11.12,10.54,10.82,10.62]
["TC1000002821.rn.1",6.18,4.45,3.317,"up",0.000436758723719123,0.00227085776406013,"NONMMUG006156","Non-coding transcript identified by NONCODE: Antisense","chr10","-","MTA_TR1100010347.mm","Noncoding",40449407,40451925,30,null,"NA","MTA_TR1100010347.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",6.49,5.89,6.16,4.34,4.77,4.23]
["TC1700000557.rn.1",7.73,5.97,3.387,"up",0.000437525148862109,0.00227416198709865,"LOC100909828","protein phosphatase 1 regulatory subunit 14B-like","chr17","+","mRNARGD6501717_1","Pseudogene",37461718,37462266,30,null,"NA","mRNARGD6501717_1","Rat Genome Database","protein phosphatase 1 regulatory subunit 14B-like","chr17",100,100,{"$nulls":24},"Pseudogene",7.82,7.37,7.99,5.82,6.14,5.95]
["TC1200001338.rn.1",8.2,9.68,-2.789,"down",0.00043871909855968,0.00227968574965008,"MGI:5011568","PREDICTED:  predicted gene, 19383 (Gm19383), miscRNA.","chr12","-","MTA_TR0500005572.mm","Noncoding",23789552,23814928,30,null,"NA","MTA_TR0500005572.mm","MTA2Rn6","PREDICTED:  predicted gene, 19383 (Gm19383), miscRNA.","chr12",100,100,{"$nulls":24},"NonCoding",8.27,8.13,8.19,9.75,9.83,9.47]
["TC0600001042.rn.1",6.27,7.11,-1.79,"down",0.000445032824859668,0.0023014781782189,"NONMMUG009366","Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1200001974.mm","Noncoding",102075383,102076291,30,null,"NA","MTA_TR1200001974.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",6,6.56,6.24,6.97,7.16,7.2]
["TC1900000623.rn.1",13.8,12.69,2.158,"up",0.000447942160270732,0.00231376844069667,"RGD1563834","similar to 40S ribosomal protein S16","chr19","+","mRNARGD2508103_1","Pseudogene",44267616,44268208,30,null,"NA","mRNARGD2508103_1","Rat Genome Database","similar to 40S ribosomal protein S16","chr19",100,100,{"$nulls":24},"Pseudogene",13.94,13.75,13.7,12.79,12.98,12.31]
["TC1300001919.rn.1",15.44,16.06,-1.537,"down",0.000453221334678045,0.00233055328509929,"Gp_dh_C.0","Unannotated AceView Transcript","chr13","-","Gp_dh_C.0.aSep08-unspliced","Pseudogene",89823160,89824454,34,null,"NA","Gp_dh_C.0.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr13",100,100,{"$nulls":24},"Pseudogene",15.35,15.43,15.54,16.11,16.09,15.97]
["TC0100004788.rn.1",4.39,4.96,-1.485,"down",0.000460439062499346,0.0023548658064527,null,null,"chr1","-",null,"Pseudogene",72514751,72515209,30,null,"NA","ENSRNOT00000022565","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:76021129:76021587:1 gene:ENSRNOG00000016805 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",4.28,4.29,4.6,4.97,5.02,4.89]
["TC0100008035.rn.1",7.54,8.4,-1.815,"down",0.000460558025137396,0.0023548658064527,"LOC100912309","ankyrin repeat domain-containing protein 27-like","chr1","+","mRNARGD6487706_1","Noncoding",91168479,91171219,30,null,"NA","mRNARGD6487706_1","Rat Genome Database","ankyrin repeat domain-containing protein 27-like","chr1",100,100,{"$nulls":24},"NonCoding",7.33,7.55,7.74,8.52,8.35,8.32]
["TC0300000592.rn.1",7.7,5.44,4.79,"up",0.000463858508607728,0.00236295781613632,"NONMMUG022999","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002843.mm","Noncoding",38443581,38445323,30,null,"NA","MTA_TR0200002843.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",7.38,7.48,8.23,5.07,5.03,6.23]
["TC0500000611.rn.1",3.91,4.57,-1.58,"down",0.000464013772624573,0.00236305577375006,"ENSMUSG00000098999","MAP kinase and growth arrest RNA conserved region 1","chr5","+","MTA_TR0400001607.mm","Noncoding",63312473,63312599,30,null,"NA","MTA_TR0400001607.mm","MTA2Rn6","MAP kinase and growth arrest RNA conserved region 1","chr5",100,100,{"$nulls":24},"NonCoding",4.13,3.87,3.74,4.45,4.65,4.61]
["TC1400000591.rn.1",13.07,11.1,3.918,"up",0.000464406315566224,0.0023643616962781,"LOC100912502","40S ribosomal protein SA-like","chr14","+","mRNARGD6486724_1","Pseudogene",51439022,51440052,30,null,"NA","mRNARGD6486724_1","Rat Genome Database","40S ribosomal protein SA-like","chr14",100,100,{"$nulls":24},"Pseudogene",13.04,12.69,13.49,11.57,11.15,10.58]
["TC0900001937.rn.1",10.06,12.5,-5.426,"down",0.000465990717523988,0.00237034399827502,"Bnip3-ps1","BCL2/adenovirus E1B interacting protein 3, pseudogene 1","chr9","-","RGD1565371.aSep08-unspliced","Pseudogene",53616197,53617811,30,null,"NA","RGD1565371.aSep08-unspliced","Ace View","BCL2/adenovirus E1B interacting protein 3, pseudogene 1","chr9",100,100,{"$nulls":24},"Pseudogene",10.22,9.74,10.21,12.56,12.74,12.19]
["TC2000000479.rn.1",8.86,8.11,1.682,"up",0.000468634162812561,0.00237683037728963,null,null,"chr20","+",null,"Pseudogene",15227268,15227731,30,null,"NA","ENSRNOT00000033874","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:17414159:17414622:1 gene:ENSRNOG00000027153 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",8.83,9.03,8.72,8.16,8.05,8.12]
["TC0900001539.rn.1",5.24,4.63,1.526,"up",0.000468874700366059,0.0023771737368284,"NONMMUG018466","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR1700003527.mm","Noncoding",15484242,15487678,80,null,"NA","MTA_TR1700003527.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",5.23,5.26,5.22,4.66,4.42,4.8]
["TC0500002598.rn.1",5.41,6.44,-2.042,"down",0.000470489693964785,0.00238206833980247,"NONMMUG029013","Non-coding transcript identified by NONCODE: Antisense","chr5","-","MTA_TR0400008510.mm","Noncoding",58369135,58377407,20,null,"NA","MTA_TR0400008510.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",5.34,5.69,5.19,6.1,6.55,6.68]
["TC1000001896.rn.1",6.26,8.09,-3.555,"down",0.000471768694831904,0.00238559785659472,"LOC102548022","uncharacterized LOC102548022","chr10","+","mRNARGD7658397_1","Noncoding",102723569,102757042,50,null,"NA","mRNARGD7658397_1","Rat Genome Database","uncharacterized LOC102548022","chr10",100,100,{"$nulls":24},"NonCoding",6.34,6.5,5.95,8.34,7.61,8.33]
["TC0600001109.rn.1",3.75,4.41,-1.58,"down",0.00047339814262695,0.00238647580591769,"ENSMUSG00000098128","predicted gene 3693, Non-coding transcript identified by NONCODE: Antisense, novel transcript, antisense to Slc8a3","chr6","+","MTA_TR1200002084.mm","Noncoding",104921012,104936072,30,null,"NA","MTA_TR1200002084.mm","MTA2Rn6","predicted gene 3693, Non-coding transcript identified by NONCODE: Antisense, novel transcript, antisense to Slc8a3","chr6",100,100,{"$nulls":24},"NonCoding",3.76,3.92,3.56,4.4,4.26,4.58]
["TC1200001459.rn.1",3.23,3.86,-1.548,"down",0.000474710005655486,0.00239047973123246,"LOC102555275","uncharacterized LOC102555275","chr12","-","mRNARGD7529890_1","Noncoding",30946805,30949695,30,null,"NA","mRNARGD7529890_1","Rat Genome Database","uncharacterized LOC102555275","chr12",100,100,{"$nulls":24},"NonCoding",3.46,3.05,3.17,3.86,3.93,3.79]
["TC0200000601.rn.1",14.38,14.96,-1.495,"down",0.000476858730306946,0.00239579063498273,"LOC361904","similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)","chr2","+","LOC361904.aSep08-unspliced","Pseudogene",63776412,63777621,30,null,"NA","LOC361904.aSep08-unspliced","Ace View","similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)","chr2",100,100,{"$nulls":24},"Pseudogene",14.44,14.41,14.28,15.02,15.06,14.81]
["TC0300000504.rn.1",4.78,3.94,1.79,"up",0.000476874382013628,0.00239579063498273,"NONMMUG022849","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002652.mm","Noncoding",28930648,28933926,30,null,"NA","MTA_TR0200002652.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.53,4.7,5.1,3.96,3.81,4.04]
["TC0300004352.rn.1",5.76,4.48,2.428,"up",0.000480593779591546,0.00240396527909819,"NONMMUG024980","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200016928.mm","Noncoding",140612410,140614775,30,null,"NA","MTA_TR0200016928.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.94,5.38,5.97,4.26,4.35,4.84]
["TC1500001846.rn.1",7.08,5.46,3.074,"up",0.000480626988331587,0.00240396527909819,"KnowTID_00002494","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15","-","MTA_TR1400006864.mm","Noncoding",41996977,41999895,30,null,"NA","MTA_TR1400006864.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",6.81,6.89,7.54,5.32,5.51,5.54]
["TC1700001647.rn.1",10.82,11.62,-1.741,"down",0.000481204485051264,0.00240616094122784,"NCBI_Gene:100862316","PREDICTED:  uncharacterized LOC100862316 (LOC100862316), miscRNA.","chr17","-","MTA_TR1300001011.mm","Noncoding",31443731,31444685,30,null,"NA","MTA_TR1300001011.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862316 (LOC100862316), miscRNA.","chr17",100,100,{"$nulls":24},"NonCoding",10.88,10.84,10.74,11.59,11.61,11.67]
["TC0200000627.rn.1",6.35,8.09,-3.34,"down",0.00048679285489524,0.00242711787668921,"NONMMUG014130","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1500000419.mm","Noncoding",69637028,69638994,30,null,"NA","MTA_TR1500000419.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",6.07,6.43,6.55,8.08,8.22,7.98]
["TC1100001428.rn.1",4.66,4.16,1.414,"up",0.000488100949461515,0.00243098225519493,"LOC102555952","uncharacterized LOC102555952","chr11","-","mRNARGD7531334_1","Noncoding",41886890,41888295,24,null,"NA","mRNARGD7531334_1","Rat Genome Database","uncharacterized LOC102555952","chr11",100,100,{"$nulls":24},"NonCoding",4.68,4.77,4.54,4.27,4.14,4.06]
["TC1900001035.rn.1",7.49,8.29,-1.741,"down",0.000489208473348272,0.00243218099328358,null,null,"chr19","-",null,"Pseudogene",12971471,12972386,30,null,"NA","ENSRNOT00000018484","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:19:24083293:24084208:-1 gene:ENSRNOG00000013826 gene_biotype:pseudogene transcript_biotype:pseudogene","chr19",100,100,{"$nulls":24},"Pseudogene",7.64,7.34,7.5,8.21,8.31,8.35]
["TC0200003863.rn.1",7.86,9.02,-2.235,"down",0.00049666678393638,0.00245311308039774,"LOC102548861","uncharacterized LOC102548861","chr2","-","mRNARGD7692740_1","Noncoding",169532940,169549162,30,null,"NA","mRNARGD7692740_1","Rat Genome Database","uncharacterized LOC102548861","chr2",100,100,{"$nulls":24},"NonCoding",7.78,8,7.81,8.87,8.94,9.26]
["TC0900002060.rn.1",7.13,8.69,-2.949,"down",0.000499313243596624,0.00246408248707868,"NONMMUG000760","Non-coding transcript identified by NONCODE: Antisense","chr9","-","MTA_TR0100007801.mm","Noncoding",67285022,67285714,30,null,"NA","MTA_TR0100007801.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr9",100,100,{"$nulls":24},"NonCoding",7.22,6.85,7.33,8.71,9.02,8.35]
["TC0500002512.rn.1",5.96,8.7,-6.681,"down",0.000504133505104979,0.00248011982927743,"KnowTID_00005393","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400008153.mm","Noncoding",51450640,51455498,30,null,"NA","MTA_TR0400008153.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",6.2,5.85,5.84,8.76,8.89,8.46]
["TC0100004619.rn.1",6.8,7.35,-1.464,"down",0.000510415860443365,0.00249758701739766,"KRAB.56","Unannotated AceView Transcript","chr1","-","KRAB.56.aSep08","Pseudogene",62231101,62267571,130,null,"NA","KRAB.56.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"Pseudogene",6.74,6.89,6.77,7.21,7.43,7.4]
["TC1400000441.rn.1",5.86,7.41,-2.928,"down",0.0005119907120821,0.00250378986777192,"NONMMUG032735","Non-coding transcript identified by NONCODE: Antisense","chr14","+","MTA_TR0500009042.mm","Noncoding",37457901,37465269,30,null,"NA","MTA_TR0500009042.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr14",100,100,{"$nulls":24},"NonCoding",6.02,5.76,5.8,7.29,7.49,7.46]
["TC1600000158.rn.1",6.42,5.28,2.204,"up",0.000512115905831191,0.00250378986777192,"NONMMUG012640","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","+","MTA_TR1400001319.mm","Noncoding",11043403,11043995,30,null,"NA","MTA_TR1400001319.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",6.21,6.75,6.31,5.27,5.16,5.42]
["TC1600000345.rn.1",4.22,3.26,1.945,"up",0.000515489663277612,0.00251674281641242,"NONMMUG040773","Non-coding transcript identified by NONCODE: Antisense","chr16","+","MTA_TR0800007203.mm","Noncoding",22550166,22550893,30,null,"NA","MTA_TR0800007203.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr16",100,100,{"$nulls":24},"NonCoding",4.2,3.96,4.49,3.09,3.28,3.42]
["TC0800001659.rn.1",5.37,6.22,-1.803,"down",0.00052106830149816,0.00253400824897103,"klypor","Unannotated AceView Transcript","chr8","+","klypor.aSep08","Noncoding",122734047,122736642,30,null,"NA","klypor.aSep08","Ace View","Unannotated AceView Transcript","chr8",100,100,{"$nulls":24},"NonCoding",5.48,5.4,5.24,6.17,6.41,6.09]
["TC0300004524.rn.1",10.07,9.1,1.959,"up",0.000526063774090047,0.0025497359988053,"S10_plectin.0","ribosomal protein L30","chr3","-","ENSRNOT00000043950","Pseudogene",149960764,149961362,18,"7q22",64640,"ENSRNOT00000043950","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:156333298:156333884:-1 gene:ENSRNOG00000050899 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,"ENSRNOT00000043950","P62890","ENSRNOT00000043950","Rn.3359","adrenal gland| brain| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| pancreas| pituitary gland| spleen| vibrissa| juvenile| adult","ENSRNOT00000043950","GO:0006412","translation","inferred from electronic annotation","ENSRNOT00000043950","GO:0022625","cytosolic large ribosomal subunit","inferred from electronic annotation","ENSRNOT00000043950","GO:0003735","structural constituent of ribosome","inferred from electronic annotation",{"$nulls":7},"Pseudogene",10.09,9.9,10.22,9.07,9.28,8.96]
["TC0100002431.rn.1",5.8,4.82,1.972,"up",0.000527033379171527,0.00255158774514732,"NONMMUG039108","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR0700005759.mm","Noncoding",183981620,183983052,30,null,"NA","MTA_TR0700005759.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",5.6,5.85,5.95,4.93,4.5,5.03]
["TC0300000204.rn.1",11.33,11.94,-1.526,"down",0.000527279583048033,0.00255206844166269,"ENSMUSG00000082578","predicted gene 13527, glyceraldehyde-3-phosphate dehydrogenase (Gapdh) pseudogene","chr3","+","MTA_TR0200002905.mm","Pseudogene",8793398,8794096,30,null,"NA","MTA_TR0200002905.mm","MTA2Rn6","predicted gene 13527, glyceraldehyde-3-phosphate dehydrogenase (Gapdh) pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",11.26,11.36,11.37,12.02,11.99,11.81]
["TC2000000785.rn.1",15.78,14.64,2.204,"up",0.00053083635531313,0.00256356917657614,"LOC100361061","ribosomal protein L13a-like","chr20","+","mRNARGD6644362_1","Pseudogene",43142633,43143301,30,null,"NA","mRNARGD6644362_1","Rat Genome Database","ribosomal protein L13a-like","chr20",100,100,{"$nulls":24},"Pseudogene",15.95,15.6,15.79,14.9,14.83,14.19]
["TC0100001391.rn.1",8.14,6.61,2.888,"up",0.000533697222807696,0.00257380745624444,"KRAB.66","Unannotated AceView Transcript","chr1","+","KRAB.66.aSep08","Pseudogene",98048275,98067895,60,null,"NA","KRAB.66.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"Pseudogene",8.1,8.07,8.26,6.5,6.8,6.54]
["TC1700001139.rn.1",7,4.46,5.816,"up",0.000535311060153671,0.0025794420044187,"NONMMUG022197","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","+","MTA_TR0200000851.mm","Noncoding",89362634,89364276,30,null,"NA","MTA_TR0200000851.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",5.95,7.18,7.88,4.51,4.25,4.61]
["TC0400000130.rn.1",5.66,6.79,-2.189,"down",0.000539512932781513,0.00259034802524811,"NONMMUG031926","Non-coding transcript identified by NONCODE: Antisense","chr4","+","MTA_TR0500007310.mm","Noncoding",8195698,8198080,30,null,"NA","MTA_TR0500007310.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",5.86,5.43,5.68,6.43,6.93,7.01]
["TC0600000668.rn.1",7.99,6.06,3.811,"up",0.000546675314560952,0.00261357289591856,"NONMMUG008871","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001056.mm","Noncoding",60382035,60383110,30,null,"NA","MTA_TR1200001056.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",7.51,7.94,8.51,5.8,5.79,6.58]
["TC1500001844.rn.1",9.09,7.59,2.828,"up",0.00054684723124884,0.00261357289591856,"ENSMUSG00000098183","predicted gene, 27010, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr15","-","MTA_TR1400006862.mm","Noncoding",41956258,41957203,30,null,"NA","MTA_TR1400006862.mm","MTA2Rn6","predicted gene, 27010, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr15",100,100,{"$nulls":24},"NonCoding",8.96,9.08,9.23,7.41,7.2,8.15]
["TC0400000926.rn.1",11.61,11.09,1.434,"up",0.000547492971169118,0.00261357289591856,"ENSMUSG00000097106","ribosomal protein L31, pseudogene 23","chr4","+","MTA_TR0800006426.mm","Pseudogene",82239650,82240016,30,null,"NA","MTA_TR0800006426.mm","MTA2Rn6","ribosomal protein L31, pseudogene 23","chr4",100,100,{"$nulls":24},"Pseudogene",11.8,11.57,11.47,11.07,11.11,11.08]
["TC0200004437.rn.1",4.03,5.1,-2.099,"down",0.000548012290412855,0.0026136375186007,"NONMMUG027611","Non-coding transcript identified by NONCODE: Sense No Exonic,  adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330043J11 product:unclassifiable, full insert sequence.","chr2","-","MTA_TR0300008946.mm","Noncoding",210222376,210225046,30,null,"NA","MTA_TR0300008946.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic,  adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330043J11 product:unclassifiable, full insert sequence.","chr2",100,100,{"$nulls":24},"NonCoding",3.8,4.08,4.2,4.86,5.03,5.41]
["TC0600001311.rn.1",6.37,4.4,3.918,"up",0.000548461851519811,0.00261380818182459,"KnowTID_00001479","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1200002701.mm","Noncoding",122256899,122260660,30,null,"NA","MTA_TR1200002701.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",6.32,6.25,6.55,4.49,4.45,4.26]
["TC1500001011.rn.1",4.14,3.48,1.58,"up",0.000550014295639504,0.00261833333229757,"LOC102546379","uncharacterized LOC102546379","chr15","+","mRNARGD7502355_1","Noncoding",87262796,87264294,30,null,"NA","mRNARGD7502355_1","Rat Genome Database","uncharacterized LOC102546379","chr15",100,100,{"$nulls":24},"NonCoding",4,4.04,4.39,3.39,3.49,3.57]
["TC1800001261.rn.1",3.67,4.18,-1.424,"down",0.000556378060470267,0.00263922536549126,"NONMMUG019664","Non-coding transcript identified by NONCODE: Antisense","chr18","-","MTA_TR1800003675.mm","Noncoding",28832304,28835236,30,null,"NA","MTA_TR1800003675.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr18",100,100,{"$nulls":24},"NonCoding",3.73,3.7,3.57,4.19,4.29,4.06]
["TC0900001270.rn.1",7.42,6.06,2.567,"up",0.000556811551350983,0.00264007608331872,"NONMMUG018708","Non-coding transcript identified by NONCODE: Antisense","chr9","+","MTA_TR1700004043.mm","Noncoding",113370099,113372798,30,null,"NA","MTA_TR1700004043.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr9",100,100,{"$nulls":24},"NonCoding",7.52,7.4,7.34,5.88,6.45,5.84]
["TC1000002139.rn.1",8.36,7.33,2.042,"up",0.000560909676188238,0.0026513093836914,"NONMMUG035790","Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR0600003149.mm","Noncoding",112564204,112564788,40,null,"NA","MTA_TR0600003149.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",8.52,8.2,8.37,7.23,7.54,7.23]
["TC0300000499.rn.1",5.11,3.53,2.99,"up",0.000564645350270712,0.00266133686722697,"NONMMUG022843","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002645.mm","Noncoding",28700380,28701998,30,null,"NA","MTA_TR0200002645.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.77,5.33,5.24,3.39,3.57,3.62]
["TC0200003807.rn.1",8.81,9.41,-1.516,"down",0.00056608810834098,0.00266611283268657,"LOC679522","similar to guanine nucleotide-binding protein, beta-1 subunit","chr2","-","LOC679522.aSep08-unspliced","Pseudogene",157009581,157015131,60,null,"NA","LOC679522.aSep08-unspliced","Ace View","similar to guanine nucleotide-binding protein, beta-1 subunit","chr2",100,100,{"$nulls":24},"Pseudogene",8.88,8.82,8.73,9.43,9.44,9.35]
["TC1500000921.rn.1",7.54,9.21,-3.182,"down",0.000567543028843783,0.00267031147184327,"KnowTID_00006198","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15","+","MTA_TR0600005348.mm","Noncoding",65507334,65507804,30,null,"NA","MTA_TR0600005348.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",7.73,7.32,7.56,9.02,9.65,8.96]
["TC1500001843.rn.1",6.37,5.26,2.158,"up",0.00056923048938961,0.00267462884262562,"Dleu2","deleted in lymphocytic leukemia 2","chr15","-","LOC691928.aSep08","Noncoding",41943460,41982345,100,null,"NA","LOC691928.aSep08","Ace View","deleted in lymphocytic leukemia 2","chr15",100,100,{"$nulls":24},"NonCoding",6.21,6.41,6.49,5.29,5.2,5.29]
["TC0700002669.rn.1",6.14,4.6,2.908,"up",0.000574640525153307,0.00269131317401944,"NONMMUG004651","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1000009057.mm","Noncoding",52330104,52330774,30,null,"NA","MTA_TR1000009057.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",5.8,6.16,6.45,4.17,4.68,4.94]
["TC1100000106.rn.1",8.13,6.05,4.228,"up",0.000578860166993141,0.00270669716307883,"NONMMUG016974","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003014.mm","Noncoding",16009628,16013151,30,null,"NA","MTA_TR1600003014.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",7.71,8.51,8.16,6.46,5.6,6.08]
["TC1200000211.rn.1",6.23,7.51,-2.428,"down",0.000579633659430929,0.00270885560881751,"NONMMUG034268","Non-coding transcript identified by NONCODE: Antisense","chr12","+","MTA_TR0500012913.mm","Noncoding",12411968,12413667,30,null,"NA","MTA_TR0500012913.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr12",100,100,{"$nulls":24},"NonCoding",6.1,6.29,6.29,7.36,7.65,7.53]
["TC0200000162.rn.1",7.31,9.92,-6.105,"down",0.000582022934248242,0.0027149088052702,"NONMMUG011611","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1300002879.mm","Noncoding",23012789,23016238,30,null,"NA","MTA_TR1300002879.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",7.35,7.24,7.34,9.81,9.81,10.14]
["TC1700001420.rn.1",12.34,11.08,2.395,"up",0.000584183412315435,0.00272066178078905,"LOC100911018","60S ribosomal protein L6-like","chr17","-","mRNARGD6495218_1","Pseudogene",14681463,14687450,30,null,"NA","mRNARGD6495218_1","Rat Genome Database","60S ribosomal protein L6-like","chr17",100,100,{"$nulls":24},"Pseudogene",12.29,12.43,12.3,11,11.22,11.03]
["TC0100002686.rn.1",5.35,4.8,1.464,"up",0.00058419598424634,0.00272066178078905,null,null,"chr1","+",null,"Pseudogene",199857713,199858195,30,null,"NA","ENSRNOT00000075722","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:206904865:206905347:1 gene:ENSRNOG00000049463 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",5.35,5.45,5.24,4.97,4.72,4.72]
["TC0600000675.rn.1",5.03,3.84,2.282,"up",0.000584842670650194,0.00272294345533758,"NONMMUG008878","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001062.mm","Noncoding",60630253,60632979,30,null,"NA","MTA_TR1200001062.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",5.14,5.05,4.89,3.96,3.34,4.22]
["TC1400001226.rn.1",11.31,12.1,-1.729,"down",0.000592664887042355,0.00274684678570244,null,null,"chr14","-",null,"Pseudogene",1564497,1565490,30,null,"NA","ENSRNOT00000034962","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:1559728:1560721:-1 gene:ENSRNOG00000050167 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",11.32,11.46,11.16,12.02,12.21,12.07]
["TC0900001347.rn.1",7.19,6.19,2,"up",0.000595196258511959,0.00275417000708877,"Ybx1-ps3",null,"chr9","+",null,"Pseudogene",119685598,119686547,30,null,"NA","ENSRNOT00000072907","ENSEMBL","ensembl:known chromosome:Rnor_5.0:9:119138793:119139742:1 gene:ENSRNOG00000049654 gene_biotype:pseudogene transcript_biotype:pseudogene","chr9",100,100,{"$nulls":24},"Pseudogene",7.4,7.22,6.96,6.11,6.3,6.17]
["TC0100005522.rn.1",6.11,7.28,-2.25,"down",0.000596429198709393,0.00275706004852705,"NCBI_Gene:100861750","PREDICTED:  uncharacterized LOC100861750 (LOC100861750), miscRNA.","chr1","-","MTA_TR0700011309.mm","Noncoding",114653234,114663178,30,null,"NA","MTA_TR0700011309.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861750 (LOC100861750), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",6.28,5.96,6.09,7.4,7.42,7.03]
["TC1000001851.rn.1",5.43,4.17,2.395,"up",0.000596455682595397,0.00275706004852705,"NONMMUG007946","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","+","MTA_TR1100006986.mm","Noncoding",97660368,97662028,30,null,"NA","MTA_TR1100006986.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",5.32,5.31,5.67,4.13,4.2,4.17]
["TC0800000524.rn.1",3.5,4.17,-1.591,"down",0.000597805475412116,0.00276063772588848,"LOC102547107","uncharacterized LOC102547107","chr8","+","mRNARGD7722607_1","Noncoding",46028120,46042045,60,null,"NA","mRNARGD7722607_1","Rat Genome Database","uncharacterized LOC102547107","chr8",100,100,{"$nulls":24},"NonCoding",3.5,3.66,3.35,4.2,3.96,4.35]
["TC0500002615.rn.1",18.22,16.26,3.891,"up",0.000598952043577499,0.00276492052856358,null,null,"chr5","-",null,"Noncoding",58994680,58994954,30,null,"NA","NONRATT044682","NONCODE","Non-coding transcript identified by NONCODE","chr5",100,100,{"$nulls":24},"NonCoding",18.29,18.38,17.99,16.97,16.31,15.51]
["TC0400002713.rn.1",6.78,8.97,-4.563,"down",0.000599449494720621,0.00276648171434429,"KnowTID_00006285","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","-","MTA_TR0600007000.mm","Noncoding",66163521,66164736,30,null,"NA","MTA_TR0600007000.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",6.49,6.99,6.87,9.04,8.99,8.89]
["TC1400001835.rn.1",6.58,7.67,-2.129,"down",0.000604378883135115,0.00277889507118583,null,null,"chr14","-",null,"Pseudogene",51485267,51486146,30,null,"NA","ENSRNOT00000014726","ENSEMBL","ensembl:known chromosome:Rnor_5.0:14:51644598:51645477:-1 gene:ENSRNOG00000011069 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,null,null,"ENSRNOT00000014726","Rn.58708",{"$nulls":20},"Pseudogene",6.56,6.6,6.57,7.41,7.99,7.61]
["TC1000002648.rn.1",5.63,6.86,-2.346,"down",0.000605272877036082,0.00277964220580234,"LOC102554343","uncharacterized LOC102554343","chr10","-","mRNARGD7675942_1","Noncoding",31405811,31419162,40,null,"NA","mRNARGD7675942_1","Rat Genome Database","uncharacterized LOC102554343","chr10",100,100,{"$nulls":24},"NonCoding",5.53,5.55,5.8,6.73,6.95,6.91]
["TC0200004606.rn.1",4.24,4.65,-1.329,"down",0.00060551335539088,0.00277964220580234,"LOC102550474","uncharacterized LOC102550474","chr2","-","mRNARGD7674947_1","Noncoding",227075135,227094320,30,null,"NA","mRNARGD7674947_1","Rat Genome Database","uncharacterized LOC102550474","chr2",100,100,{"$nulls":24},"NonCoding",4.29,4.28,4.14,4.59,4.61,4.74]
["TC1300000427.rn.1",8.99,10.12,-2.189,"down",0.000605528735151029,0.00277964220580234,"RGD1562140","similar to brain Zn-finger protein","chr13","+","mRNARGD6744668_1","Pseudogene",61363387,61365366,30,null,"NA","mRNARGD6744668_1","Rat Genome Database","similar to brain Zn-finger protein","chr13",100,100,{"$nulls":24},"Pseudogene",8.85,9.03,9.1,10.2,9.97,10.19]
["TC1000002120.rn.1",10.48,9.62,1.815,"up",0.000608275208468751,0.00278721937386196,null,null,"chr10","+",null,"Pseudogene",111015909,111016372,30,null,"NA","ENSRNOT00000032075","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:110591949:110592412:1 gene:ENSRNOG00000028051 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",10.61,10.41,10.41,9.79,9.79,9.29]
["TC0800001197.rn.1",4.83,5.33,-1.414,"down",0.000609372952940452,0.00279004153018677,"KnowTID_00007540","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900003472.mm","Noncoding",90502803,90504458,30,null,"NA","MTA_TR0900003472.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",4.86,4.83,4.8,5.33,5.48,5.17]
["TC0400002093.rn.1",8.96,7.2,3.387,"up",0.00061728693302415,0.00281366867319929,null,null,"chr4","+",null,"Noncoding",183879398,183879593,30,null,"NA","NONRATT040732","NONCODE","Non-coding transcript identified by NONCODE","chr4",100,100,{"$nulls":24},"NonCoding",8.71,8.78,9.39,7.04,7.49,7.07]
["TC1600001738.rn.1",8.05,9.66,-3.053,"down",0.000618721222783452,0.00281798803381524,"NONMMUG040357","Non-coding transcript identified by NONCODE: Linc","chr16","-","MTA_TR0800001347.mm","Noncoding",59310934,59313422,30,null,"NA","MTA_TR0800001347.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",7.72,8.18,8.25,9.62,9.9,9.47]
["TC0300004494.rn.1",5.95,5.04,1.879,"up",0.000619432751628498,0.00281853266752516,"NONMMUG025130","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200017294.mm","Noncoding",148293736,148295455,30,null,"NA","MTA_TR0200017294.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.81,5.99,6.06,5.04,4.83,5.25]
["TC1700000748.rn.1",3.94,4.83,-1.853,"down",0.000623314544089228,0.00283000442900522,"NONMMUG010345","Non-coding transcript identified by NONCODE: Antisense","chr17","+","MTA_TR1300004087.mm","Noncoding",51903261,51905208,30,null,"NA","MTA_TR1300004087.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr17",100,100,{"$nulls":24},"NonCoding",3.76,4,4.05,4.94,4.89,4.67]
["TC0200000787.rn.1",7.59,5.62,3.918,"up",0.000631796526512118,0.00285500374483206,"LOC102546586","uncharacterized LOC102546586","chr2","+","mRNARGD7648402_1","Noncoding",94145391,94230359,30,null,"NA","mRNARGD7648402_1","Rat Genome Database","uncharacterized LOC102546586","chr2",100,100,{"$nulls":24},"NonCoding",7.15,7.14,8.49,5.64,5.58,5.65]
["TC0X00000853.rn.1",5.79,4.55,2.362,"up",0.000632666587596054,0.00285500603569006,"NONMMUG045809","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00003408.mm","Noncoding",100388345,100392166,30,null,"NA","MTA_TR0X00003408.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",5.7,5.7,5.96,4.15,4.56,4.94]
["TC1300000344.rn.1",5.61,4.65,1.945,"up",0.000632765715123294,0.00285500603569006,null,null,"chr13","+",null,"Pseudogene",52602662,52603160,30,null,"NA","ENSRNOT00000060522","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:57650617:57651115:1 gene:ENSRNOG00000039490 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",5.74,5.73,5.35,4.45,4.85,4.65]
["TC0700000530.rn.1",6.01,4.29,3.294,"up",0.000640632904149015,0.00288301403574418,"NONMMUG004448","Non-coding transcript identified by NONCODE: Linc","chr7","+","MTA_TR1000003689.mm","Noncoding",35347311,35348826,30,null,"NA","MTA_TR1000003689.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",5.85,5.47,6.72,4.33,4.48,4.07]
["TC0700002921.rn.1",14.18,13.32,1.815,"up",0.000641457303450183,0.00288453963817385,"joysee","Unannotated AceView Transcript","chr7","-","joysee.aSep08-unspliced","Noncoding",70691986,70692820,35,null,"NA","joysee.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr7",100,100,{"$nulls":24},"NonCoding",14.16,14.18,14.21,13.47,13.53,12.95]
["TC1000002172.rn.1",5.79,6.32,-1.444,"down",0.000642301856001514,0.00288678539213514,"LOC688680","similar to CTP synthase (UTP--ammonia ligase) (CTP synthetase)","chr10","-","LOC688680.aSep08-unspliced","Pseudogene",1935953,1937638,30,null,"NA","LOC688680.aSep08-unspliced","Ace View","similar to CTP synthase (UTP--ammonia ligase) (CTP synthetase)","chr10",100,100,{"$nulls":24},"Pseudogene",5.71,5.75,5.9,6.33,6.47,6.17]
["TC0200003846.rn.1",7.4,8.44,-2.056,"down",0.000644328954462117,0.00289066070970078,null,null,"chr2","-",null,"Noncoding",165929946,165931250,30,null,"NA","NONRATT031544","NONCODE","Non-coding transcript identified by NONCODE","chr2",100,100,{"$nulls":24},"NonCoding",7.26,7.38,7.55,8.54,8.66,8.13]
["TC1700001009.rn.1",5.77,5.05,1.647,"up",0.000648579871046931,0.00290181754477389,"ENSMUSG00000086018","predicted gene 13179, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr17","+","MTA_TR0200010012.mm","Noncoding",77664832,77666043,30,null,"NA","MTA_TR0200010012.mm","MTA2Rn6","predicted gene 13179, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr17",100,100,{"$nulls":24},"NonCoding",5.62,5.85,5.85,5.21,4.87,5.06]
["TC1900000553.rn.1",5.13,3.9,2.346,"up",0.000648653360563987,0.00290181754477389,"beydey","Unannotated AceView Transcript","chr19","+","beydey.aSep08-unspliced","Noncoding",40455768,40459757,60,null,"NA","beydey.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr19",100,100,{"$nulls":24},"NonCoding",4.93,4.96,5.49,3.93,3.56,4.22]
["TC0400000496.rn.1",7.18,6.53,1.569,"up",0.000650102958491913,0.00290530961974865,null,null,"chr4","+",null,"Pseudogene",55539444,55539851,30,null,"NA","ENSRNOT00000010055","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:55281865:55282272:1 gene:ENSRNOG00000007658 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",7.18,7.22,7.14,6.53,6.52,6.55]
["TC0400000804.rn.1",4.13,4.83,-1.625,"down",0.000651825619672201,0.0029085185818972,"NONMMUG035201","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600001757.mm","Noncoding",75479464,75482855,30,null,"NA","MTA_TR0600001757.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",4.02,4.17,4.19,4.67,4.7,5.12]
["TC1700001740.rn.1",7.06,5.82,2.362,"up",0.00065284675606038,0.00290943181356496,"ENSMUSG00000097461","predicted gene, 26735, Non-coding transcript identified by NONCODE: Antisense","chr17","-","MTA_TR1300000832.mm","Noncoding",37617028,37625529,21,null,"NA","MTA_TR1300000832.mm","MTA2Rn6","predicted gene, 26735, Non-coding transcript identified by NONCODE: Antisense","chr17",100,100,{"$nulls":24},"NonCoding",6.99,7.56,6.63,5.85,5.72,5.88]
["TC0200002820.rn.1",10.62,9.76,1.815,"up",0.000656522186840233,0.0029221763313548,null,null,"chr2","-",null,"Pseudogene",36490582,36491228,30,null,"NA","ENSRNOT00000052415","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:55604230:55604876:-1 gene:ENSRNOG00000048900 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",10.82,10.5,10.53,9.69,9.85,9.75]
["TC0X00002324.rn.1",5.27,5.95,-1.602,"down",0.000657690513083232,0.00292541937235842,null,null,"chrX","-",null,"Pseudogene",119542064,119542587,30,null,"NA","ENSRNOT00000075213","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:119686875:119687398:-1 gene:ENSRNOG00000047619 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",5.26,5.3,5.24,5.75,5.87,6.24]
["TC0600001697.rn.1",6.93,5.22,3.272,"up",0.000664692176953344,0.00295041830807126,"NONMMUG010140","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200003839.mm","Noncoding",145486833,145488870,30,null,"NA","MTA_TR1200003839.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",6.6,6.93,7.27,4.66,5.25,5.75]
["TC0X00000852.rn.1",5.36,4.06,2.462,"up",0.000668464306372933,0.00295908709197228,"NONMMUG045808","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00003407.mm","Noncoding",100381960,100384484,30,null,"NA","MTA_TR0X00003407.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",5.14,5.38,5.57,4.06,3.85,4.27]
["TC1100001767.rn.1",6.79,5.74,2.071,"up",0.000668609569742169,0.00295908709197228,"NONMMUG016248","Non-coding transcript identified by NONCODE: Antisense","chr11","-","MTA_TR1600001698.mm","Noncoding",72018437,72019595,30,null,"NA","MTA_TR1600001698.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr11",100,100,{"$nulls":24},"NonCoding",6.85,6.79,6.72,5.59,5.99,5.64]
["TC1800001870.rn.1",5.31,7.45,-4.408,"down",0.000668886067216977,0.00295955676862611,"slafo","Unannotated AceView Transcript","chr18","+","slafo.aSep08-unspliced","Pseudogene",54495008,54495954,30,null,"NA","slafo.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr18",100,100,{"$nulls":24},"Pseudogene",5.61,4.98,5.33,7.06,7.5,7.78]
["TC1700002350.rn.1",3.97,4.53,-1.474,"down",0.000669127510110517,0.00295987114289019,"ENSMUSG00000085680","predicted gene 13327, Non-coding transcript identified by NONCODE: Antisense, putative novel transcript","chr17","-","MTA_TR0200010683.mm","Noncoding",88194885,88216689,40,null,"NA","MTA_TR0200010683.mm","MTA2Rn6","predicted gene 13327, Non-coding transcript identified by NONCODE: Antisense, putative novel transcript","chr17",100,100,{"$nulls":24},"NonCoding",4.04,4.04,3.83,4.49,4.48,4.61]
["TC0100002240.rn.1",5.04,9.05,-16.111,"down",0.000673637644674547,0.0029737635389178,"MGI:5012016","PREDICTED:  predicted gene, 19831, transcript variant 3 (Gm19831), miscRNA.","chr1","+","MTA_TR0700005279.mm","Noncoding",168971269,169004797,40,null,"NA","MTA_TR0700005279.mm","MTA2Rn6","PREDICTED:  predicted gene, 19831, transcript variant 3 (Gm19831), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",4.46,4.12,6.53,9.46,8.84,8.84]
["TC0800001685.rn.1",5.96,7.07,-2.158,"down",0.000676201083673568,0.00297902333869986,"LOC100910986","uncharacterized LOC100910986","chr8","+","mRNARGD6495656_1","Noncoding",124157395,124159988,30,null,"NA","mRNARGD6495656_1","Rat Genome Database","uncharacterized LOC100910986","chr8",100,100,{"$nulls":24},"NonCoding",6.09,5.83,5.96,7.06,7.24,6.91]
["TC1600001662.rn.1",4.32,5.31,-1.986,"down",0.000677909538433748,0.00298303527572551,"NONMMUG040472","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","-","MTA_TR0800001538.mm","Noncoding",49813655,49816064,30,null,"NA","MTA_TR0800001538.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",4.38,4.11,4.48,5.37,5.03,5.53]
["TC0300003277.rn.1",5.35,7.02,-3.182,"down",0.000679575725300337,0.00298631670230006,"NONMMUG023347","Non-coding transcript identified by NONCODE: Linc","chr3","-","MTA_TR0200013260.mm","Noncoding",57876305,57880210,30,null,"NA","MTA_TR0200013260.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",5.5,5.26,5.28,6.59,7.4,7.08]
["TC1800000807.rn.1",4.05,4.95,-1.866,"down",0.000681367444750895,0.0029889240057473,"LOC102551869","uncharacterized LOC102551869","chr18","+","mRNARGD7662552_1","Noncoding",70045693,70048886,30,null,"NA","mRNARGD7662552_1","Rat Genome Database","uncharacterized LOC102551869","chr18",100,100,{"$nulls":24},"NonCoding",4.23,3.94,3.97,5.12,4.87,4.86]
["TC0400001858.rn.1",12.73,13.77,-2.056,"down",0.00068305477709012,0.0029932756137317,"ENSMUSG00000097979","predicted gene 4691, Glyceraldehyde-3-phosphate dehydrogenase (Gapdh) pseudogene","chr4","+","MTA_TR0600010530.mm","Pseudogene",161987372,161988552,30,null,"NA","MTA_TR0600010530.mm","MTA2Rn6","predicted gene 4691, Glyceraldehyde-3-phosphate dehydrogenase (Gapdh) pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",12.73,12.62,12.85,13.88,14.04,13.39]
["TC0800001634.rn.1",11.97,10.34,3.095,"up",0.000693868657783931,0.00302615929057611,"NONMMUG044069","Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900004886.mm","Noncoding",121344733,121347919,30,null,"NA","MTA_TR0900004886.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",11.76,12.5,11.65,10.36,10.17,10.49]
["TC0200002693.rn.1",6.51,4.58,3.811,"up",0.000702735009385385,0.00304951532551424,"NONMMUG011678","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR1300007119.mm","Noncoding",27991308,27994516,30,null,"NA","MTA_TR1300007119.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.99,6.42,7.12,4.43,4.61,4.69]
["TC0300001311.rn.1",4.89,4.35,1.454,"up",0.000711010055203827,0.0030777362743448,"NONMMUG024034","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200005014.mm","Noncoding",94579580,94580843,30,null,"NA","MTA_TR0200005014.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.89,4.87,4.9,4.23,4.35,4.48]
["TC0300001750.rn.1",4.31,4.69,-1.301,"down",0.000715666163853696,0.00308788796132701,"NONMMUG024737","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200006794.mm","Noncoding",124144284,124146181,80,null,"NA","MTA_TR0200006794.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",4.3,4.34,4.29,4.69,4.57,4.8]
["TC0700003429.rn.1",5.19,6.08,-1.853,"down",0.000719468432617308,0.00310044310171056,"LOC100911090","zinc finger protein 16-like","chr7","-","mRNARGD7567926_1","Pseudogene",118531301,118535733,30,null,"NA","mRNARGD7567926_1","Rat Genome Database","zinc finger protein 16-like","chr7",100,100,{"$nulls":24},"Pseudogene",5.22,4.91,5.45,5.99,6.22,6.03]
["TC0500001626.rn.1",4.79,4.42,1.292,"up",0.000720788759007023,0.00310330435655589,null,null,"chr5","+",null,"Pseudogene",151787854,151788211,30,null,"NA","ENSRNOT00000033332","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:155476901:155477258:1 gene:ENSRNOG00000026841 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",4.73,4.78,4.85,4.5,4.45,4.3]
["TC0100004506.rn.1",5.44,4.3,2.204,"up",0.000720846990887285,0.00310330435655589,"LOC102547769","uncharacterized LOC102547769","chr1","-","mRNARGD7670104_1","Noncoding",53092469,53094833,30,null,"NA","mRNARGD7670104_1","Rat Genome Database","uncharacterized LOC102547769","chr1",100,100,{"$nulls":24},"NonCoding",5.57,5.65,5.09,4.27,3.97,4.67]
["TC0100007458.rn.1",4.49,3.93,1.474,"up",0.000725599390512067,0.00311804601168032,"NONMMUG021056","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR1900004501.mm","Noncoding",243049791,243054429,30,null,"NA","MTA_TR1900004501.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",4.37,4.7,4.39,3.88,3.94,3.97]
["TC1000002541.rn.1",5.52,6.29,-1.705,"down",0.000727421964185905,0.00312232442299811,"LOC100912908","uncharacterized LOC100912908","chr10","-","mRNARGD7615471_1","Noncoding",19915565,19923921,30,null,"NA","mRNARGD7615471_1","Rat Genome Database","uncharacterized LOC100912908","chr10",100,100,{"$nulls":24},"NonCoding",5.44,5.57,5.55,6.41,6.43,6.02]
["TC1100000107.rn.1",6.67,5.28,2.621,"up",0.000727680377125574,0.0031226620135989,"NONMMUG016975","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003015.mm","Noncoding",16043740,16047175,30,null,"NA","MTA_TR1600003015.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",6.37,7.04,6.61,4.88,5.39,5.56]
["TC1200001587.rn.1",5.41,4.91,1.414,"up",0.000731602694266781,0.00313403416879533,null,null,"chr12","-",null,"Pseudogene",39496255,39496731,30,null,"NA","ENSRNOT00000026411","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:41377003:41377479:-1 gene:ENSRNOG00000019523 gene_biotype:pseudogene transcript_biotype:pseudogene","chr12",100,100,{"$nulls":24},"Pseudogene",5.46,5.51,5.26,4.86,4.91,4.95]
["TC0200000676.rn.1",7.07,5.68,2.621,"up",0.000734778591156986,0.0031423859085158,"NONMMUG014182","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR1500000503.mm","Noncoding",78229468,78229690,30,null,"NA","MTA_TR1500000503.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.81,6.83,7.56,5.46,5.5,6.09]
["TC0200002568.rn.1",13.56,12.17,2.621,"up",0.000736038975777106,0.00314454821648404,"LOC688411","similar to eukaryotic translation elongation factor 1 alpha 2","chr2","-","LOC688411.aSep08-unspliced","Pseudogene",18345409,18346833,30,null,"NA","LOC688411.aSep08-unspliced","Ace View","similar to eukaryotic translation elongation factor 1 alpha 2","chr2",100,100,{"$nulls":24},"Pseudogene",13.58,13.57,13.52,12.43,12.33,11.76]
["TC0900001377.rn.1",8.12,10.09,-3.918,"down",0.000737928592443679,0.0031518459747576,"LOC102555682","uncharacterized LOC102555682","chr9","-","mRNARGD7638186_1","Noncoding",1407877,1412700,30,null,"NA","mRNARGD7638186_1","Rat Genome Database","uncharacterized LOC102555682","chr9",100,100,{"$nulls":24},"NonCoding",7.98,8.4,7.98,9.32,10.35,10.61]
["TC0300002224.rn.1",6.07,6.64,-1.485,"down",0.00074326820309867,0.00316764277625785,"NCBI_Gene:100861963","PREDICTED:  uncharacterized LOC100861963, transcript variant 1 (LOC100861963), miscRNA.","chr3","+","MTA_TR0200008439.mm","Noncoding",156933240,156939247,30,null,"NA","MTA_TR0200008439.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861963, transcript variant 1 (LOC100861963), miscRNA.","chr3",100,100,{"$nulls":24},"NonCoding",6.31,5.99,5.91,6.62,6.73,6.58]
["TC0300002582.rn.1",5.26,5.91,-1.569,"down",0.0007439857588484,0.00316914581092584,"NCBI_Gene:100862056","PREDICTED:  uncharacterized LOC100862056, transcript variant 2 (LOC100862056), miscRNA.","chr3","+","MTA_TR0200009694.mm","Noncoding",176404559,176416626,30,null,"NA","MTA_TR0200009694.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862056, transcript variant 2 (LOC100862056), miscRNA.","chr3",100,100,{"$nulls":24},"NonCoding",5.31,5.2,5.27,5.78,6.15,5.81]
["TC0X00001869.rn.1",9.48,8.36,2.173,"up",0.000744830207257529,0.00317156402475283,null,null,"chrX","-",null,"Pseudogene",63360697,63361424,30,null,"NA","ENSRNOT00000038254","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:63955923:63956650:-1 gene:ENSRNOG00000022961 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",9.61,9.43,9.39,8.22,8.08,8.77]
["TC0200001919.rn.1",6.37,5.46,1.879,"up",0.000755309759649761,0.0031985536126668,"MGI:5012470","PREDICTED:  predicted gene, 20285, transcript variant 2 (Gm20285), miscRNA.","chr2","+","MTA_TR0300003673.mm","Noncoding",207302658,207306636,30,null,"NA","MTA_TR0300003673.mm","MTA2Rn6","PREDICTED:  predicted gene, 20285, transcript variant 2 (Gm20285), miscRNA.","chr2",100,100,{"$nulls":24},"NonCoding",6.51,6.15,6.46,5.44,5.36,5.59]
["TC0500000366.rn.1",3.49,4.1,-1.526,"down",0.000758592259876102,0.00320698616361834,"fleevo","Unannotated AceView Transcript","chr5","+","fleevo.aSep08","Noncoding",46868078,46894596,40,null,"NA","fleevo.aSep08","Ace View","Unannotated AceView Transcript","chr5",100,100,{"$nulls":24},"NonCoding",3.53,3.45,3.5,4.08,3.97,4.25]
["TC1400002400.rn.1",4.81,6.14,-2.514,"down",0.00076112349990681,0.00321299545975242,"LOC100909672","uncharacterized LOC100909672","chr14","-","mRNARGD7611812_1","Noncoding",109788281,110121911,70,null,"NA","mRNARGD7611812_1","Rat Genome Database","uncharacterized LOC100909672","chr14",100,100,{"$nulls":24},"NonCoding",4.75,4.76,4.92,6.06,6.13,6.24]
["TC0500000169.rn.1",6.55,5.35,2.297,"up",0.000761743508096748,0.00321483150610996,"NONMMUG028468","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","+","MTA_TR0400000184.mm","Noncoding",21775731,21778028,30,null,"NA","MTA_TR0400000184.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",6.03,6.65,6.98,5.53,5.2,5.31]
["TC1800001747.rn.1",6.23,9.11,-7.362,"down",0.000767181299050165,0.00323006943809912,null,null,"chr18","-",null,"Noncoding",73953599,73954183,30,null,"NA","NONRATT026919","NONCODE","Non-coding transcript identified by NONCODE","chr18",100,100,{"$nulls":24},"NonCoding",6.25,5.58,6.87,8.76,8.59,9.98]
["TC1500001441.rn.1",5.8,6.69,-1.853,"down",0.000782637158511149,0.00326964648400605,"MGI:5012451","PREDICTED:  predicted gene, 20266, transcript variant 2 (Gm20266), miscRNA.","chr15","-","MTA_TR1400005817.mm","Noncoding",19685690,19688134,30,null,"NA","MTA_TR1400005817.mm","MTA2Rn6","PREDICTED:  predicted gene, 20266, transcript variant 2 (Gm20266), miscRNA.","chr15",100,100,{"$nulls":24},"NonCoding",5.84,5.64,5.92,6.81,6.44,6.82]
["TC0500002167.rn.1",4.59,5.05,-1.376,"down",0.000787488423794024,0.00328436988564386,null,null,"chr5","-",null,"Pseudogene",6214719,6215479,30,null,"NA","ENSRNOT00000032209","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:11048847:11049607:-1 gene:ENSRNOG00000021774 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",4.41,4.68,4.67,5.14,5.03,4.98]
["TC1000000190.rn.1",5.44,6.26,-1.765,"down",0.00078781760982061,0.00328436988564386,"KnowTID_00003451","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1700000999.mm","Noncoding",13134109,13137061,30,null,"NA","MTA_TR1700000999.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",5.43,5.4,5.48,6.07,6.28,6.44]
["TC1300000778.rn.1",7.48,6.33,2.219,"up",0.000790035173569807,0.00328741615827776,"LOC102554978","uncharacterized LOC102554978","chr13","+","mRNARGD7663452_1","Noncoding",90479985,90484951,30,null,"NA","mRNARGD7663452_1","Rat Genome Database","uncharacterized LOC102554978","chr13",100,100,{"$nulls":24},"NonCoding",7.21,7.75,7.48,6.16,6.35,6.47]
["TC1_KL567895v1_random00000001.rn.1",4.13,4.54,-1.329,"down",0.000790146543982749,0.00328741615827776,null,null,"chr1_KL567895v1_random","-",null,"Pseudogene",21545,22050,30,null,"NA","ENSRNOT00000072453","ENSEMBL","ensembl:novel scaffold:Rnor_5.0:JH620271.1:16188:16693:-1 gene:ENSRNOG00000048002 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1_KL567895v1_random",100,100,{"$nulls":24},"Pseudogene",4.06,4.14,4.2,4.66,4.48,4.49]
["TC0300002294.rn.1",6,5.11,1.853,"up",0.00079603803893548,0.00330363437081672,"LOC685239","similar to 60S ribosomal protein L13","chr3","+","LOC685239.aSep08-unspliced","Pseudogene",161191786,161192506,30,null,"NA","LOC685239.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L13","chr3",100,100,{"$nulls":24},"Pseudogene",6.16,5.9,5.93,5.19,5.35,4.8]
["TC0200002142.rn.1",5.76,3.74,4.056,"up",0.000804239401684814,0.00332234070075313,"NONMMUG027858","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300004325.mm","Noncoding",230839029,230841940,30,null,"NA","MTA_TR0300004325.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.34,6.03,5.91,3.76,3.93,3.54]
["TC0800003088.rn.1",10.46,9.37,2.129,"up",0.000806959288050148,0.00332882683275211,"LOC100909889","uncharacterized LOC100909889","chr8","-","mRNARGD6501403_1","Noncoding",96301601,96305531,50,null,"NA","mRNARGD6501403_1","Rat Genome Database","uncharacterized LOC100909889","chr8",100,100,{"$nulls":24},"NonCoding",10.51,10.41,10.46,9.43,9.73,8.95]
["TC1500002026.rn.1",12.96,12.45,1.424,"up",0.000812860917755951,0.00334378529286323,null,null,"chr15","-",null,"Pseudogene",54225240,54225712,30,null,"NA","ENSRNOT00000040532","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:57947050:57947522:-1 gene:ENSRNOG00000031678 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",12.94,12.91,13.03,12.49,12.55,12.31]
["TC1200001364.rn.1",9.79,8.56,2.346,"up",0.000820861560314462,0.00336619125689861,"LOC686150","similar to actin related protein 2/3 complex subunit 5","chr12","-","mRNARGD2765397_1","Pseudogene",24744576,24745078,30,null,"NA","mRNARGD2765397_1","Rat Genome Database","similar to actin related protein 2/3 complex subunit 5","chr12",100,100,{"$nulls":24},"Pseudogene",9.92,9.91,9.53,8.78,8.69,8.22]
["TC1600001930.rn.1",4.16,5.96,-3.482,"down",0.000824834078815064,0.00337569205220205,"LOC102551183","uncharacterized LOC102551183","chr16","-","mRNARGD7666556_1","Noncoding",74985928,74987156,30,null,"NA","mRNARGD7666556_1","Rat Genome Database","uncharacterized LOC102551183","chr16",100,100,{"$nulls":24},"NonCoding",4.07,4.19,4.22,5.26,6.22,6.41]
["TC1700001730.rn.1",13.07,11.16,3.758,"up",0.000831017439242992,0.00339262137181904,"LOC689728","similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)","chr17","-","LOC689728.aSep08-unspliced","Pseudogene",36712712,36713750,30,null,"NA","LOC689728.aSep08-unspliced","Ace View","similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)","chr17",100,100,{"$nulls":24},"Pseudogene",12.98,12.74,13.49,11.65,11.36,10.48]
["TC0400002975.rn.1",13.75,12.58,2.25,"up",0.000832839136769083,0.00339613359873103,"A930015D03Rik","RIKEN cDNA A930015D03 gene","chr4","-","NR_015618","Noncoding",87890913,87891493,39,null,77810,"NR_015618","RefSeq","Mus musculus RIKEN cDNA A930015D03 gene (A930015D03Rik), long non-coding RNA.","chr4",100,100,null,null,"NR_015618","Mm.483143","bone marrow| brain| embryonic tissue| eye| intestine| lung| mammary gland| ovary| salivary gland| thyroid| uterus|oocyte| cleavage| morula| organogenesis| fetus| neonate| juvenile| adult",{"$nulls":19},"NonCoding",14.07,13.98,13.21,12.51,12.66,12.56]
["TC1000000363.rn.1",5.9,6.95,-2.071,"down",0.000836406737673965,0.0034066169847912,"KnowTID_00001133","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1100001271.mm","Noncoding",20518965,20521591,30,null,"NA","MTA_TR1100001271.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",5.82,5.88,5.99,6.89,7.13,6.83]
["TC0X00000888.rn.1",8.12,7.41,1.636,"up",0.000842107289590173,0.00342084491141568,null,null,"chrX","+",null,"Pseudogene",105821114,105821546,30,null,"NA","ENSRNOT00000014607","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:105710244:105710676:1 gene:ENSRNOG00000010982 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",8.11,8.09,8.16,7.42,7.63,7.18]
["TC0300000308.rn.1",11.15,10.04,2.158,"up",0.000846319325673244,0.00342930091118962,null,null,"chr3","+",null,"Pseudogene",14872980,14873478,30,null,"NA","ENSRNOT00000017653","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:20184654:20185152:1 gene:ENSRNOG00000013219 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",11.4,10.97,11.09,10.01,10.44,9.66]
["TC1700001863.rn.1",5.61,4.81,1.741,"up",0.00084682300658746,0.0034298813488312,"NONMMUG010400","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","-","MTA_TR1300000394.mm","Noncoding",46694041,46696790,30,null,"NA","MTA_TR1300000394.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",5.66,5.33,5.84,5.04,4.75,4.65]
["TC0500001631.rn.1",11.67,10.4,2.412,"up",0.000848358987876141,0.00343356103876898,"ENSMUSG00000094557","ribosomal protein L35A, pseudogene 7","chr5","+","MTA_TR0600007325.mm","Pseudogene",151870116,151870448,30,null,"NA","MTA_TR0600007325.mm","MTA2Rn6","ribosomal protein L35A, pseudogene 7","chr5",100,100,{"$nulls":24},"Pseudogene",11.73,11.98,11.3,10.5,10.71,10]
["TC1700001919.rn.1",4.43,5.03,-1.516,"down",0.000850942051574799,0.00344160986679996,"LOC102550924","uncharacterized LOC102550924","chr17","-","mRNARGD7690521_1","Noncoding",53202293,53230333,50,null,"NA","mRNARGD7690521_1","Rat Genome Database","uncharacterized LOC102550924","chr17",100,100,{"$nulls":24},"NonCoding",4.41,4.47,4.42,5.04,4.92,5.13]
["TC0100006548.rn.1",5.79,4.23,2.949,"up",0.000852407517377675,0.00344569538067063,"NONMMUG039213","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR0700014312.mm","Noncoding",191475282,191479479,30,null,"NA","MTA_TR0700014312.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.37,5.64,6.36,4.44,4.32,3.93]
["TC0100001331.rn.1",3.79,4.38,-1.505,"down",0.000853089709749265,0.00344628403443128,"LOC102546377","uncharacterized LOC102546377","chr1","+","mRNARGD7557795_1","Noncoding",92812595,92821727,30,null,"NA","mRNARGD7557795_1","Rat Genome Database","uncharacterized LOC102546377","chr1",100,100,{"$nulls":24},"NonCoding",3.82,3.79,3.76,4.22,4.36,4.56]
["TC1000001703.rn.1",11.19,12.3,-2.158,"down",0.000855408560050491,0.00345163811768573,"LOC102552660","uncharacterized LOC102552660","chr10","+","mRNARGD7670183_1","Noncoding",90830633,90830913,30,null,"NA","mRNARGD7670183_1","Rat Genome Database","uncharacterized LOC102552660","chr10",100,100,{"$nulls":24},"NonCoding",10.99,11.03,11.55,12.59,12.21,12.1]
["TC0100000423.rn.1",5.41,6.14,-1.659,"down",0.000859176706056246,0.00346037551439915,"NONMMUG002925","Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR1000000101.mm","Noncoding",41794292,41795077,30,null,"NA","MTA_TR1000000101.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.56,5.32,5.35,6.25,6.11,6.07]
["TC1900000666.rn.1",4.61,4.09,1.434,"up",0.00086843659495606,0.00348880945674878,"NONMMUG041697","Non-coding transcript identified by NONCODE: Linc","chr19","+","MTA_TR0800004571.mm","Noncoding",48614955,48617967,30,null,"NA","MTA_TR0800004571.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr19",100,100,{"$nulls":24},"NonCoding",4.56,4.53,4.74,4.01,4.06,4.19]
["TC0300005018.rn.1",6.96,7.39,-1.347,"down",0.000869816338574653,0.00349125875818348,"LOC100910895","null","chr3","-","mRNARGD6495848_t00","Pseudogene",175949015,175956176,40,null,"NA","mRNARGD6495848_t00","Rat Genome Database","null","chr3",100,100,{"$nulls":24},"Pseudogene",6.95,6.98,6.96,7.44,7.39,7.33]
["TC0300002896.rn.1",7.48,8.37,-1.853,"down",0.000871036921468894,0.00349440701220235,null,null,"chr3","-",null,"Noncoding",12448282,12450232,30,null,"NA","NONRATT036985","NONCODE","Non-coding transcript identified by NONCODE","chr3",100,100,{"$nulls":24},"NonCoding",7.53,7.41,7.49,8.13,8.22,8.77]
["TC1700001197.rn.1",10.9,9.64,2.395,"up",0.000889438129951344,0.00354470264785386,"LOC680333","similar to eukaryotic translation elongation factor 1 alpha 2","chr17","-","LOC680333.aSep08-unspliced","Pseudogene",2679135,2680410,30,null,"NA","LOC680333.aSep08-unspliced","Ace View","similar to eukaryotic translation elongation factor 1 alpha 2","chr17",100,100,{"$nulls":24},"Pseudogene",10.96,11.07,10.68,9.44,9.82,9.65]
["TC1500000516.rn.1",8.05,8.77,-1.647,"down",0.000890226176501831,0.00354470264785386,"NCBI_Gene:100861981","PREDICTED:  uncharacterized LOC100861981 (LOC100861981), miscRNA.","chr15","+","MTA_TR1400002679.mm","Noncoding",34319770,34340968,30,null,"NA","MTA_TR1400002679.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861981 (LOC100861981), miscRNA.","chr15",100,100,{"$nulls":24},"NonCoding",8.18,7.74,8.24,8.73,8.86,8.71]
["TC0300000591.rn.1",6.66,4.87,3.458,"up",0.000891673103523833,0.00354769891921954,"NONMMUG022998","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002842.mm","Noncoding",38408888,38414181,30,null,"NA","MTA_TR0200002842.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.99,6.81,7.19,4.6,4.69,5.31]
["TC1500001819.rn.1",4.94,6,-2.085,"down",0.000893816849605775,0.00355216025955203,"NCBI_Gene:100862065","PREDICTED:  uncharacterized LOC100862065 (LOC100862065), miscRNA.","chr15","-","MTA_TR1400006786.mm","Noncoding",40669709,40671289,30,null,"NA","MTA_TR1400006786.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862065 (LOC100862065), miscRNA.","chr15",100,100,{"$nulls":24},"NonCoding",5.04,4.74,5.03,6.04,5.9,6.07]
["TC1200001161.rn.1",6.55,4.77,3.434,"up",0.00090125456675324,0.00356977610219381,"NONMMUG034188","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","-","MTA_TR0500006119.mm","Noncoding",15392432,15393858,30,null,"NA","MTA_TR0500006119.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",6.3,6.54,6.82,4.64,4.28,5.39]
["TC1900001154.rn.1",5,4.26,1.67,"up",0.000904171072869353,0.00357911564853905,"LOC102553576","uncharacterized LOC102553576","chr19","-","mRNARGD7738562_1","Noncoding",23351027,23362790,60,null,"NA","mRNARGD7738562_1","Rat Genome Database","uncharacterized LOC102553576","chr19",100,100,{"$nulls":24},"NonCoding",4.85,4.85,5.31,4.2,4.25,4.34]
["TC2000000674.rn.1",6.08,4.37,3.272,"up",0.000904308248312584,0.00357911564853905,"NONMMUG003749","Non-coding transcript identified by NONCODE: Antisense","chr20","+","MTA_TR1000001635.mm","Noncoding",30699945,30702342,30,null,"NA","MTA_TR1000001635.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr20",100,100,{"$nulls":24},"NonCoding",6.47,5.7,6.07,4.45,4.49,4.18]
["TC1000002530.rn.1",5.47,4.32,2.219,"up",0.00090709226690156,0.00358441759971497,"NONMMUG005750","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1100009546.mm","Noncoding",19504000,19505391,30,null,"NA","MTA_TR1100009546.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",5.33,5.56,5.53,4.51,4.05,4.4]
["TC0200000188.rn.1",4.65,5.94,-2.445,"down",0.000909449005289816,0.00359209610524998,"NONMMUG011641","Non-coding transcript identified by NONCODE: Antisense","chr2","+","MTA_TR1300002938.mm","Noncoding",24717780,24720539,30,null,"NA","MTA_TR1300002938.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",4.98,4.41,4.57,5.69,5.73,6.39]
["TC1300000133.rn.1",6.72,5.57,2.219,"up",0.000910305075220949,0.00359318615894776,"MGI:5011480","PREDICTED:  predicted gene, 19295 (Gm19295), miscRNA.","chr13","+","MTA_TR0100003406.mm","Noncoding",35461134,35495415,30,null,"NA","MTA_TR0100003406.mm","MTA2Rn6","PREDICTED:  predicted gene, 19295 (Gm19295), miscRNA.","chr13",100,100,{"$nulls":24},"NonCoding",6.65,7,6.51,5.35,5.6,5.76]
["TC1700000629.rn.1",8.03,8.91,-1.84,"down",0.000915373267438293,0.00360413126232928,"LOC291138","similar to adaptor-related protein complex 2, beta 1 subunit","chr17","+","LOC291138.aSep08-unspliced","Pseudogene",43021505,43024351,30,null,"NA","LOC291138.aSep08-unspliced","Ace View","similar to adaptor-related protein complex 2, beta 1 subunit","chr17",100,100,{"$nulls":24},"Pseudogene",8.18,7.79,8.13,8.97,9.07,8.68]
["TC1500000552.rn.1",6.97,6.15,1.765,"up",0.000915400790363063,0.00360413126232928,null,null,"chr15","+",null,"Pseudogene",36061177,36061609,30,null,"NA","ENSRNOT00000038403","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:39925810:39926242:1 gene:ENSRNOG00000022328 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",7.01,6.96,6.94,6.43,6.26,5.76]
["TC0600000475.rn.1",4.51,5.95,-2.713,"down",0.000919833429663884,0.00361502862142338,"NONMMUG008579","Non-coding transcript identified by NONCODE: Antisense","chr6","+","MTA_TR1200000452.mm","Noncoding",42472578,42474928,30,null,"NA","MTA_TR1200000452.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",4.39,4.37,4.76,5.98,6.47,5.39]
["TC1000002029.rn.1",7.49,4.36,8.754,"up",0.000943597823785208,0.00368058151056795,"NCBI_Gene:100861706","PREDICTED:  uncharacterized LOC100861706 (LOC100861706), miscRNA.","chr10","+","MTA_TR1100007687.mm","Noncoding",107415334,107434248,30,null,"NA","MTA_TR1100007687.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861706 (LOC100861706), miscRNA.","chr10",100,100,{"$nulls":24},"NonCoding",7.8,6.71,7.96,4.29,4.64,4.14]
["TC1100000104.rn.1",9.57,7.93,3.117,"up",0.00094709002811246,0.00368959427637173,"LOC102546364","uncharacterized LOC102546364","chr11","+","mRNARGD7740490_1","Noncoding",15948025,16103123,90,null,"NA","mRNARGD7740490_1","Rat Genome Database","uncharacterized LOC102546364","chr11",100,100,{"$nulls":24},"NonCoding",9.4,9.79,9.53,8.1,7.89,7.81]
["TC1600001003.rn.1",4.28,5.12,-1.79,"down",0.000949309777722773,0.00369422511724349,"KnowTID_00007180","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16","+","MTA_TR0800005601.mm","Noncoding",83118023,83119411,30,null,"NA","MTA_TR0800005601.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",4.33,4.05,4.46,5.05,5,5.3]
["TC0300002531.rn.1",6.81,6.1,1.636,"up",0.000951942542466755,0.00369937223829754,"LOC366268","similar to 60S ribosomal protein L7","chr3","+","LOC366268.aSep08-unspliced","Pseudogene",173645056,173645867,30,null,"NA","LOC366268.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7","chr3",100,100,{"$nulls":24},"Pseudogene",6.89,6.91,6.62,6.04,6.31,5.94]
["TC0200004775.rn.1",10.63,10.21,1.338,"up",0.000954877661783731,0.00370746085445802,"LOC681022","similar to initiation factor 2 associated 67 kDa protein","chr2","-","LOC681022.aSep08-unspliced","Pseudogene",243492062,243493903,30,null,"NA","LOC681022.aSep08-unspliced","Ace View","similar to initiation factor 2 associated 67 kDa protein","chr2",100,100,{"$nulls":24},"Pseudogene",10.74,10.48,10.67,10.16,10.26,10.21]
["TC1400001471.rn.1",3.7,3.15,1.464,"up",0.000955383437579775,0.00370859568585436,"NONMMUG032992","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","-","MTA_TR0500003012.mm","Noncoding",16552385,16555319,30,null,"NA","MTA_TR0500003012.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",3.72,3.89,3.5,3.11,3.11,3.23]
["TC0100004434.rn.1",7.35,9.02,-3.182,"down",0.00095638441861981,0.00371045148216034,null,null,"chr1","-",null,"Noncoding",47912278,47913397,30,null,"NA","NONRATT000372","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",7.78,7.06,7.22,8.83,9.4,8.83]
["TC0500001248.rn.1",3.93,4.65,-1.647,"down",0.000956715916677,0.00371045148216034,"NONMMUG030299","Non-coding transcript identified by NONCODE: Linc","chr5","+","MTA_TR0400003819.mm","Noncoding",134669173,134671100,30,null,"NA","MTA_TR0400003819.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",3.68,3.98,4.12,4.6,4.82,4.54]
["TC1000004190.rn.1",5.24,5.72,-1.395,"down",0.000969118983248856,0.00373935270058105,"LOC100912319","uncharacterized LOC100912319","chr10","-","mRNARGD7688197_1","Noncoding",106583328,106616557,90,null,"NA","mRNARGD7688197_1","Rat Genome Database","uncharacterized LOC100912319","chr10",100,100,{"$nulls":24},"NonCoding",5.29,5.29,5.13,5.78,5.54,5.83]
["TC0800000091.rn.1",4.39,3.91,1.395,"up",0.00097370856682647,0.00375276161990893,"NONMMUG042122","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","+","MTA_TR0900000303.mm","Noncoding",12146943,12150871,30,null,"NA","MTA_TR0900000303.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",4.48,4.34,4.34,3.87,3.87,4]
["TC1300001147.rn.1",4.14,4.79,-1.569,"down",0.000980941914660463,0.00377156750765093,"LOC100911239","uncharacterized LOC100911239","chr13","-","mRNARGD7590927_1","Noncoding",13311836,13325083,40,null,"NA","mRNARGD7590927_1","Rat Genome Database","uncharacterized LOC100911239","chr13",100,100,{"$nulls":24},"NonCoding",4.19,3.97,4.26,4.69,5.05,4.63]
["TC1400001740.rn.1",15.19,15.86,-1.591,"down",0.000984112960831845,0.00377570751578332,"LOC681019","similar to glyceraldehyde-3-phosphate dehydrogenase","chr14","-","LOC681019.aSep08-unspliced","Pseudogene",42457498,42458707,30,null,"NA","LOC681019.aSep08-unspliced","Ace View","similar to glyceraldehyde-3-phosphate dehydrogenase","chr14",100,100,{"$nulls":24},"Pseudogene",15.18,15.16,15.23,15.89,16,15.7]
["TC1100001830.rn.1",5.19,4.47,1.647,"up",0.00098649985497032,0.00377935506567609,"LOC102549362","uncharacterized LOC102549362","chr11","-","mRNARGD7644983_1","Noncoding",76423778,76427890,30,null,"NA","mRNARGD7644983_1","Rat Genome Database","uncharacterized LOC102549362","chr11",100,100,{"$nulls":24},"NonCoding",5.24,5.32,5,4.47,4.29,4.66]
["TC0800002342.rn.1",6.47,5.37,2.144,"up",0.000987013622849949,0.00377985309579508,"LOC100912569","uncharacterized LOC100912569","chr8","-","mRNARGD7611643_1","Noncoding",44970692,44974021,40,null,"NA","mRNARGD7611643_1","Rat Genome Database","uncharacterized LOC100912569","chr8",100,100,{"$nulls":24},"NonCoding",6.52,6.59,6.29,5.43,5.56,5.13]
["TC0400000210.rn.1",8.91,8.06,1.803,"up",0.000991820866184193,0.0037921516735501,"LOC688906","similar to splicing factor, arginine/serine-rich 2, interacting protein","chr4","+","LOC688906.aSep08-unspliced","Pseudogene",17916267,17921313,50,null,"NA","LOC688906.aSep08-unspliced","Ace View","similar to splicing factor, arginine/serine-rich 2, interacting protein","chr4",100,100,{"$nulls":24},"Pseudogene",9.18,8.79,8.75,7.87,8.18,8.14]
["TC0600000426.rn.1",3.7,3.31,1.31,"up",0.000995968072256599,0.00380103460577377,"LOC102547889","uncharacterized LOC102547889","chr6","+","mRNARGD7635183_1","Noncoding",36923268,36924982,30,null,"NA","mRNARGD7635183_1","Rat Genome Database","uncharacterized LOC102547889","chr6",100,100,{"$nulls":24},"NonCoding",3.66,3.78,3.66,3.38,3.3,3.26]
["TC1000004017.rn.1",6.34,5.82,1.434,"up",0.000996055100374745,0.00380103460577377,"LOC689085","hypothetical protein LOC689085","chr10","-","LOC689085.aSep08-unspliced","Pseudogene",97487284,97487992,30,null,"NA","LOC689085.aSep08-unspliced","Ace View","hypothetical protein LOC689085","chr10",100,100,{"$nulls":24},"Pseudogene",6.29,6.27,6.47,5.87,5.72,5.86]
["TC0800000003.rn.1",5.42,4.35,2.099,"up",0.000996483310960437,0.00380103460577377,null,null,"chr8","+",null,"Noncoding",534011,534530,30,null,"NA","NONRATT052649","NONCODE","Non-coding transcript identified by NONCODE","chr8",100,100,{"$nulls":24},"NonCoding",5.18,5.55,5.54,4.17,4.28,4.6]
["TC0200001376.rn.1",11.59,12.17,-1.495,"down",0.000997389616633394,0.00380193539943865,"LOC100359468","PTX1 protein","chr2","+","mRNARGD2726570_1","Pseudogene",167589055,167589432,30,null,"NA","mRNARGD2726570_1","Rat Genome Database","PTX1 protein","chr2",100,100,{"$nulls":24},"Pseudogene",11.6,11.43,11.74,12.07,12.25,12.2]
["TC1200001796.rn.1",5.95,4.4,2.928,"up",0.00100115159946176,0.00381214476857743,"NONMMUG033448","Non-coding transcript identified by NONCODE: Antisense","chr12","-","MTA_TR0500004083.mm","Noncoding",48556719,48579860,53,null,"NA","MTA_TR0500004083.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr12",100,100,{"$nulls":24},"NonCoding",5.76,5.53,6.56,4.61,4.54,4.04]
["TC0100004140.rn.1",3.67,2.97,1.625,"up",0.00100408096903241,0.00381660623918206,"chufly","Unannotated AceView Transcript","chr1","-","chufly.aSep08","Noncoding",19068672,19140401,40,null,"NA","chufly.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"NonCoding",3.52,3.59,3.89,2.87,3.09,2.95]
["TC0400003484.rn.1",8.52,9.7,-2.266,"down",0.00100499988798305,0.00381842805208958,"RGD1563492","null","chr4","-","mRNARGD6710121_t00","Pseudogene",136226807,136229255,50,null,"NA","mRNARGD6710121_t00","Rat Genome Database","null","chr4",100,100,{"$nulls":24},"Pseudogene",8.56,8.4,8.61,9.59,9.87,9.64]
["TC1800000859.rn.1",6.73,9.69,-7.781,"down",0.00100724364822612,0.00382527971432793,"NONMMUG020388","Non-coding transcript identified by NONCODE: Linc","chr18","+","MTA_TR1800002484.mm","Noncoding",73630496,73631258,30,null,"NA","MTA_TR1800002484.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",6.88,6.47,6.83,9.45,9.71,9.9]
["TC0600000676.rn.1",5.46,4.53,1.905,"up",0.00101024798897167,0.00383166327869583,"NONMMUG008879","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001065.mm","Noncoding",60695532,60697995,30,null,"NA","MTA_TR1200001065.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",5.61,5.09,5.69,4.46,4.42,4.72]
["TC0700002968.rn.1",4.36,3.87,1.404,"up",0.00101293516025217,0.00383791515482635,"NONMMUG014294","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004112.mm","Noncoding",73637952,73639220,30,null,"NA","MTA_TR1500004112.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",4.34,4.39,4.34,3.76,3.8,4.06]
["TC1900000865.rn.1",4.11,4.75,-1.558,"down",0.00101774395722925,0.00384833049217007,"NONMMUG041950","Non-coding transcript identified by NONCODE: Antisense","chr19","+","MTA_TR0800005194.mm","Noncoding",58735006,58743805,30,null,"NA","MTA_TR0800005194.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr19",100,100,{"$nulls":24},"NonCoding",4.08,4.2,4.04,4.53,4.71,5.02]
["TC0700001459.rn.1",4.89,5.53,-1.558,"down",0.00101859614010284,0.00385023336517871,"NONMMUG014970","Non-coding transcript identified by NONCODE: Antisense","chr7","+","MTA_TR1500001998.mm","Noncoding",121010277,121018996,30,null,"NA","MTA_TR1500001998.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",4.89,4.89,4.89,5.77,5.41,5.41]
["TC0X00000823.rn.1",3.47,3.94,-1.385,"down",0.00102417232446821,0.00385939363305572,"NONMMUG045737","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00003292.mm","Noncoding",93023369,93024463,30,null,"NA","MTA_TR0X00003292.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",3.61,3.35,3.46,3.86,4.04,3.92]
["TC1500002293.rn.1",10.96,10.33,1.548,"up",0.00102422454944372,0.00385939363305572,"LOC692035","similar to 60S ribosomal protein L29 (P23)","chr15","-","LOC692035.aSep08-unspliced","Pseudogene",87837581,87838161,30,null,"NA","LOC692035.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L29 (P23)","chr15",100,100,{"$nulls":24},"Pseudogene",11.09,10.89,10.89,10.43,10.4,10.15]
["TC1400001243.rn.1",11.67,12.32,-1.569,"down",0.00103165286701186,0.00387645294243197,"RGD1564151","similar to glyceraldehyde-3-phosphate dehydrogenase","chr14","-","RGD1564151.aSep08-unspliced","Pseudogene",2407123,2408116,30,null,"NA","RGD1564151.aSep08-unspliced","Ace View","similar to glyceraldehyde-3-phosphate dehydrogenase","chr14",100,100,{"$nulls":24},"Pseudogene",11.68,11.83,11.49,12.22,12.48,12.25]
["TC0400001913.rn.1",5.45,4.85,1.516,"up",0.00103286695041963,0.00387909014920876,null,null,"chr4","+",null,"Pseudogene",167578167,167578516,30,null,"NA","ENSRNOT00000007826","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:230105498:230105847:1 gene:ENSRNOG00000005967 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",5.49,5.37,5.49,5.01,4.7,4.83]
["TC0800001315.rn.1",4.25,3.59,1.58,"up",0.00103802189794807,0.00388870244215858,"NONMMUG043621","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","+","MTA_TR0900003756.mm","Noncoding",103006993,103009335,30,null,"NA","MTA_TR0900003756.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",4.31,4.13,4.31,3.44,3.7,3.63]
["TC0300001286.rn.1",9.49,8.2,2.445,"up",0.00103941526917084,0.00389214973933319,null,null,"chr3","+",null,"Pseudogene",93408689,93409488,30,null,"NA","ENSRNOT00000022421","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:100050674:100051473:1 gene:ENSRNOG00000016713 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",9.54,9.57,9.36,7.96,7.93,8.7]
["TC0100002884.rn.1",18.05,16.77,2.428,"up",0.00105068993014329,0.00391747902479482,null,null,"chr1","+",null,"Noncoding",214052741,214052815,30,null,"NA","NONRATT002737","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",17.88,18.16,18.1,16.51,16.86,16.95]
["TC0400003094.rn.1",8.28,6.89,2.621,"up",0.00105273916436747,0.00392175252503267,"NONMMUG035685","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600008231.mm","Noncoding",100780061,100780896,30,null,"NA","MTA_TR0600008231.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",8.05,8.04,8.76,6.98,6.47,7.22]
["TC0200003910.rn.1",6.12,4.75,2.585,"up",0.0010589144700521,0.00393463171321391,"NONMMUG026915","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300007028.mm","Noncoding",178266091,178266977,30,null,"NA","MTA_TR0300007028.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.07,6.11,6.19,4.71,4.66,4.87]
["TC1200000803.rn.1",6.83,6.17,1.58,"up",0.00106046988887482,0.00393956852858094,"LOC102547088","uncharacterized LOC102547088","chr12","+","mRNARGD7614340_1","Noncoding",47652029,47654082,30,null,"NA","mRNARGD7614340_1","Rat Genome Database","uncharacterized LOC102547088","chr12",100,100,{"$nulls":24},"NonCoding",6.88,6.8,6.8,6.05,6.2,6.27]
["TC0800000217.rn.1",10.3,9.37,1.905,"up",0.0010614102036178,0.00394053427563021,null,null,"chr8","+",null,"Pseudogene",22063270,22063467,30,null,"NA","ENSRNOT00000040903","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:22120138:22120335:1 gene:ENSRNOG00000033655 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",10.18,10.57,10.15,9.18,9.42,9.52]
["TC0500003271.rn.1",14.85,14.19,1.58,"up",0.00106196424795695,0.00394174806650859,null,null,"chr5","-",null,"Pseudogene",125404974,125405346,30,null,"NA","ENSRNOT00000049755","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:129262367:129262739:-1 gene:ENSRNOG00000028921 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",14.8,14.69,15.06,14.36,14.25,13.97]
["TC0400001461.rn.1",2.87,3.4,-1.444,"down",0.00107462816828969,0.0039726252205491,"NONMMUG036093","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600003825.mm","Noncoding",128925168,128927276,30,null,"NA","MTA_TR0600003825.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",2.9,2.73,2.99,3.34,3.32,3.54]
["TC1700000730.rn.1",3.75,4.88,-2.189,"down",0.0010806757995465,0.00398940189039304,"KnowTID_00001990","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17","+","MTA_TR1300004126.mm","Noncoding",49472500,49473410,30,null,"NA","MTA_TR1300004126.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",3.52,3.98,3.74,4.8,4.55,5.28]
["TC0600000436.rn.1",9.04,7.31,3.317,"up",0.00108302672198058,0.00399347424910309,"LOC100912231","uncharacterized LOC100912231","chr6","+","mRNARGD6487894_1","Noncoding",37783111,37806189,30,null,"NA","mRNARGD6487894_1","Rat Genome Database","uncharacterized LOC100912231","chr6",100,100,{"$nulls":24},"NonCoding",8.78,8.69,9.65,7.4,7.47,7.05]
["TC0800001881.rn.1",9.95,10.56,-1.526,"down",0.00108834437415699,0.00400543011090701,"LOC100363022","hypothetical LOC100363022","chr8","-","mRNARGD6580803_1","Pseudogene",3900224,3901362,50,null,"NA","mRNARGD6580803_1","Rat Genome Database","hypothetical LOC100363022","chr8",100,100,{"$nulls":24},"Pseudogene",9.91,9.87,10.08,10.52,10.78,10.38]
["TC1200000760.rn.1",5.64,7.04,-2.639,"down",0.00110140539893075,0.00403214187246071,"NONMMUG033533","Non-coding transcript identified by NONCODE: Linc","chr12","+","MTA_TR0500010932.mm","Noncoding",46331994,46334702,30,null,"NA","MTA_TR0500010932.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr12",100,100,{"$nulls":24},"NonCoding",5.86,5.33,5.74,6.85,7.44,6.83]
["TC0500001733.rn.1",5.32,5.98,-1.58,"down",0.00110418537174401,0.00403636449759369,null,null,"chr5","+",null,"Pseudogene",156169082,156169352,30,null,"NA","ENSRNOT00000019020","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:159924728:159924998:1 gene:ENSRNOG00000014211 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",5.49,5.26,5.22,6.07,5.99,5.89]
["TC1000002521.rn.1",4.16,3.61,1.464,"up",0.0011103561868017,0.00405309021701196,"NONMMUG005736","Non-coding transcript identified by NONCODE: Antisense","chr10","-","MTA_TR1100009526.mm","Noncoding",19031124,19035985,30,null,"NA","MTA_TR1100009526.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",4.09,4.14,4.26,3.58,3.67,3.58]
["TC0300003332.rn.1",5.36,7.11,-3.364,"down",0.00111185508182116,0.00405309021701196,"LOC102552328","uncharacterized LOC102552328","chr3","-","mRNARGD7705591_1","Noncoding",60520594,60522520,30,null,"NA","mRNARGD7705591_1","Rat Genome Database","uncharacterized LOC102552328","chr3",100,100,{"$nulls":24},"NonCoding",5.58,5.07,5.44,6.74,6.83,7.76]
["TC0300003058.rn.1",8.77,6.68,4.257,"up",0.0011141601767529,0.00406000545320086,"NONMMUG022869","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200012494.mm","Noncoding",29928529,29932279,30,null,"NA","MTA_TR0200012494.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",8.6,8.62,9.08,6.32,6.17,7.55]
["TC1800001309.rn.1",6.32,7.65,-2.514,"down",0.00111679401539161,0.0040654287411822,null,null,"chr18","-",null,"Noncoding",31328395,31329024,30,null,"NA","NONRATT026612","NONCODE","Non-coding transcript identified by NONCODE","chr18",100,100,{"$nulls":24},"NonCoding",6.36,6.28,6.32,7.48,7.73,7.73]
["TC0400000891.rn.1",5.3,5.88,-1.495,"down",0.00111681687599571,0.0040654287411822,"NONMMUG035305","Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0600002062.mm","Noncoding",79930183,79933065,30,null,"NA","MTA_TR0600002062.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",5.28,5.31,5.3,5.79,5.81,6.03]
["TC1000002083.rn.1",6.62,7.31,-1.613,"down",0.00111949717772151,0.00407106699530577,"NONMMUG008321","Non-coding transcript identified by NONCODE: Linc,  cDNA, clone:Y0G0149K02, strand:unspecified.","chr10","+","MTA_TR1100007930.mm","Noncoding",109804043,109804280,30,null,"NA","MTA_TR1100007930.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc,  cDNA, clone:Y0G0149K02, strand:unspecified.","chr10",100,100,{"$nulls":24},"NonCoding",6.42,6.74,6.71,7.41,7.42,7.1]
["TC1300000693.rn.1",4.44,4.88,-1.357,"down",0.0011195375647099,0.00407106699530577,"NONMMUG002361","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","+","MTA_TR0100005069.mm","Noncoding",85234914,85237898,30,null,"NA","MTA_TR0100005069.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",4.51,4.34,4.46,4.93,4.76,4.96]
["TC1600001726.rn.1",14.18,15.06,-1.84,"down",0.00112308221981293,0.00407968658309712,"Gnb1","guanine nucleotide binding protein (G protein), beta polypeptide 1","chr16","-","Gnb1.aSep08-unspliced","Pseudogene",56827628,56829057,30,null,"NA","Gnb1.aSep08-unspliced","Ace View","guanine nucleotide binding protein (G protein), beta polypeptide 1","chr16",100,100,{"$nulls":24},"Pseudogene",14.18,14.08,14.28,15.06,15.29,14.83]
["TC0200004766.rn.1",6.72,5.12,3.031,"up",0.00112753185661398,0.00408986341224503,"LOC102555357","uncharacterized LOC102555357","chr2","-","mRNARGD7634632_1","Noncoding",243230297,243230987,30,null,"NA","mRNARGD7634632_1","Rat Genome Database","uncharacterized LOC102555357","chr2",100,100,{"$nulls":24},"NonCoding",6.72,6.31,7.12,4.71,5.15,5.5]
["TC0700003211.rn.1",3.67,4.33,-1.58,"down",0.00112918424645348,0.00409414726469284,"KnowTID_00002952","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1500004731.mm","Noncoding",99594661,99595770,30,null,"NA","MTA_TR1500004731.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",3.58,3.49,3.95,4.47,4.29,4.24]
["TC1100001526.rn.1",14.95,13.91,2.056,"up",0.00113532144629287,0.00410813950573295,"LOC100360368","hypothetical LOC100360368","chr11","-","mRNARGD7730914_1","Pseudogene",55304515,55305338,30,null,"NA","mRNARGD7730914_1","Rat Genome Database","hypothetical LOC100360368","chr11",100,100,{"$nulls":24},"Pseudogene",15.15,14.54,15.16,13.86,14.08,13.79]
["TC0600000698.rn.1",10.12,10.93,-1.753,"down",0.00113535426784654,0.00410813950573295,"LOC681138","similar to DnaJ (Hsp40) homolog subfamily B member 6","chr6","+","mRNARGD6707952_1","Pseudogene",64193073,64193548,30,null,"NA","mRNARGD6707952_1","Rat Genome Database","similar to DnaJ (Hsp40) homolog subfamily B member 6","chr6",100,100,{"$nulls":24},"Pseudogene",10.35,10.21,9.79,10.85,11,10.93]
["TC0200002711.rn.1",7.59,6.73,1.815,"up",0.00114460801591803,0.00412938439138361,"NONMMUG011721","Non-coding transcript identified by NONCODE: Exonic","chr2","-","MTA_TR1300007210.mm","Noncoding",29153058,29153849,30,null,"NA","MTA_TR1300007210.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Exonic","chr2",100,100,{"$nulls":24},"NonCoding",7.74,7.54,7.48,6.67,6.42,7.1]
["TC0600000672.rn.1",7.23,5.79,2.713,"up",0.00114598314609839,0.00412958944605054,"NONMMUG008874","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001059.mm","Noncoding",60484864,60488676,30,null,"NA","MTA_TR1200001059.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",7.02,7.22,7.44,5.64,5.33,6.41]
["TC0100003368.rn.1",3.62,4.33,-1.636,"down",0.00114902386246345,0.00413758157438901,"NONMMUG021015","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR1900001427.mm","Noncoding",240747167,240749046,30,null,"NA","MTA_TR1900001427.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",3.48,3.78,3.6,4.03,4.57,4.4]
["TC1400000990.rn.1",9.73,10.94,-2.313,"down",0.00114993073222183,0.00413998896361148,"LOC685655","similar to CG7638-PA","chr14","+","LOC685655.aSep08-unspliced","Pseudogene",89501594,89503282,40,null,"NA","LOC685655.aSep08-unspliced","Ace View","similar to CG7638-PA","chr14",100,100,{"$nulls":24},"Pseudogene",9.92,9.46,9.8,10.85,10.99,10.99]
["TC0100004471.rn.1",3.9,4.42,-1.434,"down",0.00115202954584747,0.00414347756231068,"NONMMUG017474","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR1700000418.mm","Noncoding",49387652,49390031,30,null,"NA","MTA_TR1700000418.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",3.88,3.83,4,4.46,4.37,4.42]
["TC0600001104.rn.1",7.59,5.68,3.758,"up",0.00115526416473242,0.00415017253292634,"NONMMUG009420","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200002056.mm","Noncoding",104483020,104483625,30,null,"NA","MTA_TR1200002056.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",7.04,7.79,7.94,5.39,5.41,6.25]
["TC0200004192.rn.1",5.73,6.37,-1.558,"down",0.00115682406217248,0.00415361529226915,"LOC102547114","uncharacterized LOC102547114","chr2","-","mRNARGD7724504_1","Noncoding",196138471,196141334,30,null,"NA","mRNARGD7724504_1","Rat Genome Database","uncharacterized LOC102547114","chr2",100,100,{"$nulls":24},"NonCoding",5.62,5.75,5.83,6.26,6.45,6.41]
["TC1200001220.rn.1",5.22,6.64,-2.676,"down",0.00116509843274397,0.00417395960104792,"NONMMUG034120","Non-coding transcript identified by NONCODE: Linc","chr12","-","MTA_TR0500005934.mm","Noncoding",18460782,18460970,30,null,"NA","MTA_TR0500005934.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr12",100,100,{"$nulls":24},"NonCoding",5.37,4.94,5.35,6.33,6.61,6.98]
["TC0X00002016.rn.1",9.6,8.63,1.959,"up",0.00116518011418586,0.00417395960104792,null,null,"chrX","-",null,"Pseudogene",74725510,74726217,30,null,"NA","ENSRNOT00000045025","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:75528527:75529234:-1 gene:ENSRNOG00000050755 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",9.76,9.46,9.59,8.41,8.62,8.86]
["TC1900001042.rn.1",4.34,4.94,-1.516,"down",0.001165833448036,0.00417445131055066,null,null,"chr19","-",null,"Noncoding",14662960,14664352,30,null,"NA","NONRATT027987","NONCODE","Non-coding transcript identified by NONCODE","chr19",100,100,{"$nulls":24},"NonCoding",4.48,4.07,4.48,5.05,4.89,4.89]
["TC1500000177.rn.1",6.75,7.32,-1.485,"down",0.0011766873649967,0.00420062396575374,"NONMMUG012181","Non-coding transcript identified by NONCODE: Antisense","chr15","+","MTA_TR1400004474.mm","Noncoding",18646213,18649222,30,null,"NA","MTA_TR1400004474.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr15",100,100,{"$nulls":24},"NonCoding",6.84,6.58,6.84,7.25,7.31,7.39]
["TC0200000227.rn.1",4.58,5.38,-1.741,"down",0.00117955841510997,0.00420914322696699,"LOC102554964","uncharacterized LOC102554964","chr2","+","mRNARGD7615540_1","Noncoding",27754804,27828815,30,null,"NA","mRNARGD7615540_1","Rat Genome Database","uncharacterized LOC102554964","chr2",100,100,{"$nulls":24},"NonCoding",4.8,4.61,4.33,5.13,5.63,5.39]
["TC0400004090.rn.1",4.68,3.5,2.266,"up",0.00118708479132753,0.0042307857837814,"NONMMUG036979","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600011444.mm","Noncoding",180573232,180575645,30,null,"NA","MTA_TR0600011444.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",4.15,4.76,5.14,3.63,3.34,3.54]
["TC1100000103.rn.1",6.48,5.42,2.085,"up",0.00120231970258204,0.00427227559189298,"NONMMUG016972","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003012.mm","Noncoding",15931591,15932054,30,null,"NA","MTA_TR1600003012.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",6.19,6.62,6.62,5.26,5.37,5.62]
["TC1700001895.rn.1",10.54,9.83,1.636,"up",0.00121818225001136,0.00430707679713433,null,null,"chr17","-",null,"Pseudogene",49848862,49849324,30,null,"NA","ENSRNOT00000047730","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:47905511:47905973:-1 gene:ENSRNOG00000031133 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",10.87,10.36,10.4,9.99,9.74,9.77]
["TC1100001072.rn.1",7.64,8.9,-2.395,"down",0.00121822115985045,0.00430707679713433,"LOC498037","similar to cell division cycle 10 homolog","chr11","-","LOC498037.aSep08-unspliced","Pseudogene",2785122,2786411,30,null,"NA","LOC498037.aSep08-unspliced","Ace View","similar to cell division cycle 10 homolog","chr11",100,100,{"$nulls":24},"Pseudogene",7.93,7.78,7.22,8.67,9.03,9]
["TC0700003260.rn.1",7.13,6.38,1.682,"up",0.00122436270107794,0.00432165052910269,null,null,"chr7","-",null,"Pseudogene",106559404,106559773,30,null,"NA","ENSRNOT00000034679","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:106507546:106507915:-1 gene:ENSRNOG00000025549 gene_biotype:pseudogene transcript_biotype:pseudogene","chr7",100,100,{"$nulls":24},"Pseudogene",7.41,6.86,7.13,6.26,6.54,6.34]
["TC1500000590.rn.1",5.75,6.8,-2.071,"down",0.00122868000383226,0.00433125733784457,"LOC100362563","hypothetical LOC100362563","chr15","+","mRNARGD2776155_1","Pseudogene",39955343,39962490,90,null,"NA","mRNARGD2776155_1","Rat Genome Database","hypothetical LOC100362563","chr15",100,100,{"$nulls":24},"Pseudogene",5.86,5.84,5.56,6.76,6.91,6.73]
["TC0X00000235.rn.1",6.71,8.1,-2.621,"down",0.00123462728317046,0.00434671879528862,null,null,"chrX","+",null,"Noncoding",22294116,22294403,30,null,"NA","NONRATT059715","NONCODE","Non-coding transcript identified by NONCODE","chrX",100,100,{"$nulls":24},"NonCoding",6.57,7.01,6.56,8.13,8.19,7.99]
["TC0700001583.rn.1",3.85,4.4,-1.464,"down",0.00123588804911233,0.00434675264246412,"LOC102554082","uncharacterized LOC102554082","chr7","+","mRNARGD7651252_1","Noncoding",126475387,126489345,118,null,"NA","mRNARGD7651252_1","Rat Genome Database","uncharacterized LOC102554082","chr7",100,100,{"$nulls":24},"NonCoding",3.83,3.9,3.83,4.17,4.46,4.57]
["TC0X00002443.rn.1",4.88,6.99,-4.317,"down",0.00123898601020581,0.00435316609013847,"NONMMUG044835","Non-coding transcript identified by NONCODE: Linc","chrX","-","MTA_TR0X00005981.mm","Noncoding",135003417,135005080,30,null,"NA","MTA_TR0X00005981.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",4.76,4.62,5.25,6.91,7.48,6.57]
["TC0200001292.rn.1",4.59,4.1,1.404,"up",0.00124016088660214,0.00435486479720945,"LOC102555139","uncharacterized LOC102555139","chr2","+","mRNARGD7531038_1","Noncoding",157764486,157765082,30,null,"NA","mRNARGD7531038_1","Rat Genome Database","uncharacterized LOC102555139","chr2",100,100,{"$nulls":24},"NonCoding",4.54,4.64,4.58,4.13,4.05,4.13]
["TC1700001942.rn.1",5.74,5.13,1.526,"up",0.0012414201132766,0.00435738710602704,"NONMMUG019256","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","-","MTA_TR1800000101.mm","Noncoding",54742955,54744586,30,null,"NA","MTA_TR1800000101.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",5.57,5.85,5.8,5.03,5.01,5.36]
["TC0800002069.rn.1",4.97,4.61,1.283,"up",0.00125610501697055,0.00439519746319092,"uc009oku.1","cDNA, clone:Y2G0101N09, strand:unspecified.","chr8","-","MTA_TR0900006057.mm","Noncoding",22291855,22291999,30,null,"NA","MTA_TR0900006057.mm","MTA2Rn6","cDNA, clone:Y2G0101N09, strand:unspecified.","chr8",100,100,{"$nulls":24},"NonCoding",4.97,5.06,4.87,4.64,4.63,4.56]
["TC0200001203.rn.1",4.49,5.3,-1.753,"down",0.00125995439553143,0.0044046423434849,"NONMMUG026686","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2","+","MTA_TR0300001339.mm","Noncoding",148385945,148390125,30,null,"NA","MTA_TR0300001339.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2",100,100,{"$nulls":24},"NonCoding",4.35,4.71,4.41,5.2,5.09,5.6]
["TC0600002412.rn.1",5.2,6.54,-2.532,"down",0.00126415990154922,0.00441464473063744,"LOC102546336","uncharacterized LOC102546336","chr6","-","mRNARGD7543648_1","Noncoding",69939770,69945212,30,null,"NA","mRNARGD7543648_1","Rat Genome Database","uncharacterized LOC102546336","chr6",100,100,{"$nulls":24},"NonCoding",4.8,5.6,5.21,6.64,6.63,6.36]
["TC0100001355.rn.1",6.08,6.57,-1.404,"down",0.00126911799548287,0.00442421206091369,"LOC102551537","uncharacterized LOC102551537","chr1","+","mRNARGD7732906_1","Noncoding",94791622,94803937,30,null,"NA","mRNARGD7732906_1","Rat Genome Database","uncharacterized LOC102551537","chr1",100,100,{"$nulls":24},"NonCoding",5.86,6.19,6.19,6.57,6.5,6.65]
["TC0200000100.rn.1",5.05,5.42,-1.292,"down",0.00127208456594778,0.00443099679067152,"LOC102554363","uncharacterized LOC102554363","chr2","+","mRNARGD7599592_1","Noncoding",13058142,13091568,133,null,"NA","mRNARGD7599592_1","Rat Genome Database","uncharacterized LOC102554363","chr2",100,100,{"$nulls":24},"NonCoding",5.1,5.02,5.02,5.4,5.41,5.44]
["TC0100000708.rn.1",8.35,6.93,2.676,"up",0.00127733870183289,0.00443684274935795,"NCBI_Gene:100861805","PREDICTED:  uncharacterized LOC100861805 (LOC100861805), miscRNA.","chr1","+","MTA_TR0700007802.mm","Noncoding",64086628,64087803,30,null,"NA","MTA_TR0700007802.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861805 (LOC100861805), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",8.56,7.95,8.55,6.75,7.45,6.58]
["TC0600001981.rn.1",4.31,4.77,-1.376,"down",0.00127814800145229,0.00443876628013349,"LOC100912066","uncharacterized LOC100912066","chr6","-","mRNARGD7529789_1","Noncoding",24342927,24377198,60,null,"NA","mRNARGD7529789_1","Rat Genome Database","uncharacterized LOC100912066","chr6",100,100,{"$nulls":24},"NonCoding",4.26,4.32,4.34,4.8,4.94,4.57]
["TC1200001385.rn.1",5.14,4.3,1.79,"up",0.00127893213562981,0.00443971425420172,"NONMMUG033992","Non-coding transcript identified by NONCODE: Antisense","chr12","-","MTA_TR0500005424.mm","Noncoding",25126653,25129527,30,null,"NA","MTA_TR0500005424.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr12",100,100,{"$nulls":24},"NonCoding",5.18,5.2,5.04,4.27,3.95,4.68]
["TC1500002409.rn.1",8.79,10,-2.313,"down",0.00127986810782056,0.00444118835416519,"MGI:5012094","PREDICTED:  predicted gene, 19909 (Gm19909), miscRNA.","chr15","-","MTA_TR1400008260.mm","Noncoding",105764245,105816566,30,null,"NA","MTA_TR1400008260.mm","MTA2Rn6","PREDICTED:  predicted gene, 19909 (Gm19909), miscRNA.","chr15",100,100,{"$nulls":24},"NonCoding",9.23,8.35,8.79,9.83,10.15,10.01]
["TC0600002408.rn.1",5.84,6.75,-1.879,"down",0.00128242099150265,0.00444678420536999,"NONMMUG008925","Non-coding transcript identified by NONCODE: Linc","chr6","-","MTA_TR1200004742.mm","Noncoding",66955698,66960106,30,null,"NA","MTA_TR1200004742.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",5.6,6.01,5.92,6.93,6.35,6.98]
["TC1800000185.rn.1",3.65,3.92,-1.206,"down",0.00129107920123105,0.0044640399690654,"LOC102555536","uncharacterized LOC102555536","chr18","+","mRNARGD7602390_1","Noncoding",18497920,18499163,30,null,"NA","mRNARGD7602390_1","Rat Genome Database","uncharacterized LOC102555536","chr18",100,100,{"$nulls":24},"NonCoding",3.6,3.68,3.66,3.89,3.88,3.99]
["TC0700003284.rn.1",4,4.71,-1.636,"down",0.00129211518561621,0.00446551163397069,"LOC102551574","uncharacterized LOC102551574","chr7","-","mRNARGD7751268_1","Noncoding",109252749,109258987,30,null,"NA","mRNARGD7751268_1","Rat Genome Database","uncharacterized LOC102551574","chr7",100,100,{"$nulls":24},"NonCoding",3.87,4.19,3.94,4.72,4.88,4.52]
["TC0800001176.rn.1",9.78,11.07,-2.445,"down",0.00129858875240603,0.00448286669674983,"NCBI_Gene:100862068","PREDICTED:  uncharacterized LOC100862068 (LOC100862068), miscRNA.","chr8","+","MTA_TR0900003383.mm","Noncoding",87222938,87231199,30,null,"NA","MTA_TR0900003383.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862068 (LOC100862068), miscRNA.","chr8",100,100,{"$nulls":24},"NonCoding",9.95,9.47,9.93,10.87,11.26,11.07]
["TC0900001003.rn.1",5.26,5.81,-1.464,"down",0.00129959293461902,0.00448544185719591,"NONMMUG001160","Non-coding transcript identified by NONCODE: Antisense","chr9","+","MTA_TR0100002345.mm","Noncoding",89070661,89076403,30,null,"NA","MTA_TR0100002345.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr9",100,100,{"$nulls":24},"NonCoding",5.14,5.43,5.2,5.77,5.95,5.72]
["TC1800000073.rn.1",5.4,6.69,-2.445,"down",0.00130079441845176,0.00448736650187059,"NONMMUG019392","Non-coding transcript identified by NONCODE: Antisense","chr18","+","MTA_TR1800000331.mm","Noncoding",6475448,6476761,30,null,"NA","MTA_TR1800000331.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr18",100,100,{"$nulls":24},"NonCoding",5.51,5.18,5.5,7.1,6.91,6.05]
["TC1700001987.rn.1",7.26,7.98,-1.647,"down",0.00130147446059198,0.00448836864303023,"LOC100912254","uncharacterized LOC100912254","chr17","-","mRNARGD6488037_1","Noncoding",59875345,59876722,30,null,"NA","mRNARGD6488037_1","Rat Genome Database","uncharacterized LOC100912254","chr17",100,100,{"$nulls":24},"NonCoding",7.35,7.1,7.33,7.86,8.16,7.91]
["TC0800001874.rn.1",4.82,5.54,-1.647,"down",0.00130812312826849,0.00450593037103945,"LOC300331","similar to phosphoglycerate kinase 1","chr8","-","LOC300331.aSep08-unspliced","Pseudogene",2089766,2091076,30,null,"NA","LOC300331.aSep08-unspliced","Ace View","similar to phosphoglycerate kinase 1","chr8",100,100,{"$nulls":24},"Pseudogene",4.51,4.98,4.97,5.49,5.64,5.48]
["TC0200004487.rn.1",6.21,4.51,3.249,"up",0.00131085635740605,0.00451355516045599,"NONMMUG027672","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300009194.mm","Noncoding",211808238,211808615,30,null,"NA","MTA_TR0300009194.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.34,6.51,6.79,4.37,4.38,4.77]
["TC1700001352.rn.1",5.62,6.49,-1.828,"down",0.00131931228526697,0.00453907183746733,"uc007qoh.1","cDNA, clone:Y1G0125F08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000053240, based on BLAT search.","chr17","-","MTA_TR1300001729.mm","Noncoding",10597927,10598151,30,null,"NA","MTA_TR1300001729.mm","MTA2Rn6","cDNA, clone:Y1G0125F08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000053240, based on BLAT search.","chr17",100,100,{"$nulls":24},"NonCoding",5.82,5.59,5.45,6.43,6.51,6.52]
["TC0100007985.rn.1",5.99,4.06,3.811,"up",0.00133107786466279,0.00457140244900303,"NONMMUG021757","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR1900005951.mm","Noncoding",281751376,281752925,30,null,"NA","MTA_TR1900005951.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.99,6.31,5.68,4.33,4.24,3.62]
["TC1900001164.rn.1",4.38,5.06,-1.602,"down",0.00133240591218611,0.00457415476296145,"NONMMUG041052","Non-coding transcript identified by NONCODE: Antisense","chr19","-","MTA_TR0800007816.mm","Noncoding",24263868,24271982,30,null,"NA","MTA_TR0800007816.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr19",100,100,{"$nulls":24},"NonCoding",4.15,4.53,4.46,5.25,5.1,4.84]
["TC1400001872.rn.1",6.63,8.18,-2.928,"down",0.00133877930942452,0.00459240430174039,"NONMMUG032495","Non-coding transcript identified by NONCODE: Linc","chr14","-","MTA_TR0500001900.mm","Noncoding",59398979,59402309,30,null,"NA","MTA_TR0500001900.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",6.48,6.39,7.02,8.33,8.32,7.9]
["TC0300003339.rn.1",3.69,3.31,1.301,"up",0.00134202957060246,0.00459901275812494,"4930441J16Rik","RIKEN cDNA 4930441J16 gene","chr3","-","NR_040501","Noncoding",61221949,61223295,30,"2|2",73962,"NR_040501","RefSeq","Mus musculus RIKEN cDNA 4930441J16 gene (4930441J16Rik), long non-coding RNA.","chr3",100,100,null,null,"NR_040501","Mm.50289","testis| adult",{"$nulls":19},"NonCoding",3.6,3.81,3.66,3.39,3.24,3.31]
["TC0300003060.rn.1",7.83,6.49,2.532,"up",0.0013434994260401,0.00460235765115886,"NONMMUG022871","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200012496.mm","Noncoding",29949786,29952410,30,null,"NA","MTA_TR0200012496.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",7.57,7.82,8.09,6.12,6.34,7.02]
["TC0700003122.rn.1",9.84,8.51,2.514,"up",0.00134841584187211,0.00461634442041002,"LOC100911340","40S ribosomal protein S3a-like","chr7","-","mRNARGD6493497_1","Pseudogene",91633090,91636151,17,null,"NA","mRNARGD6493497_1","Rat Genome Database","40S ribosomal protein S3a-like","chr7",100,100,{"$nulls":24},"Pseudogene",10.14,9.91,9.47,8.22,8.94,8.37]
["TC0100001043.rn.1",8.49,10.31,-3.531,"down",0.00135191560400033,0.00462468018060058,null,null,"chr1","+",null,"Noncoding",81370324,81370630,30,null,"NA","NONRATT000854","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",8.66,8.38,8.44,10.19,10.65,10.08]
["TC0100002371.rn.1",5.72,3.94,3.434,"up",0.00135352280542272,0.00462765443578822,"bargler","Unannotated AceView Transcript","chr1","+","bargler.aSep08-unspliced","Noncoding",175976474,175982486,115,null,"NA","bargler.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"NonCoding",5.64,5.64,5.89,3.93,3.94,3.96]
["TC0600000674.rn.1",7.28,5.76,2.868,"up",0.00135885368522661,0.00464042211493024,"NONMMUG008877","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001061.mm","Noncoding",60601658,60602652,30,null,"NA","MTA_TR1200001061.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",6.93,6.98,7.93,5.53,5.65,6.11]
["TC0200004745.rn.1",6.37,6.89,-1.434,"down",0.00135970687962673,0.00464219107822247,"LOC680687","hypothetical protein LOC680687","chr2","-","LOC680687.aSep08","Noncoding",240620153,240626613,60,null,"NA","LOC680687.aSep08","Ace View","hypothetical protein LOC680687","chr2",100,100,{"$nulls":24},"NonCoding",6.55,6.24,6.32,6.75,6.9,7.03]
["TC0100004230.rn.1",8.86,9.41,-1.464,"down",0.00136132528697961,0.0046468032148011,null,null,"chr1","-",null,"Pseudogene",25262797,25263797,30,null,"NA","ENSRNOT00000016803","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:26723013:26724013:-1 gene:ENSRNOG00000012588 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",8.96,8.96,8.67,9.35,9.47,9.4]
["TC0800001863.rn.1",5.4,5.88,-1.395,"down",0.0013621690448535,0.00464876983853637,"NONMMUG042029","Non-coding transcript identified by NONCODE: Antisense","chr8","-","MTA_TR0900005541.mm","Noncoding",1511472,1513489,30,null,"NA","MTA_TR0900005541.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr8",100,100,{"$nulls":24},"NonCoding",5.56,5.2,5.45,5.89,5.82,5.93]
["TC0200004485.rn.1",6.03,5.26,1.705,"up",0.00136305122432247,0.00464912228095699,"NONMMUG027670","Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300009190.mm","Noncoding",211760253,211761434,30,null,"NA","MTA_TR0300009190.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",5.85,5.95,6.28,5.41,5,5.37]
["TC0500002112.rn.1",3.77,4.54,-1.705,"down",0.00136326645865421,0.00464912228095699,"LOC102552084","uncharacterized LOC102552084","chr5","-","mRNARGD7635619_1","Noncoding",1414500,1417310,30,null,"NA","mRNARGD7635619_1","Rat Genome Database","uncharacterized LOC102552084","chr5",100,100,{"$nulls":24},"NonCoding",3.72,3.88,3.72,4.33,4.41,4.87]
["TC0200002764.rn.1",5.28,7.59,-4.959,"down",0.00136464696830444,0.00465265603266269,"LOC102546661","uncharacterized LOC102546661","chr2","-","mRNARGD7683940_1","Noncoding",32634600,32698131,30,null,"NA","mRNARGD7683940_1","Rat Genome Database","uncharacterized LOC102546661","chr2",100,100,{"$nulls":24},"NonCoding",5.37,5.06,5.41,7.27,7.19,8.31]
["TC0200000783.rn.1",8.99,6.76,4.691,"up",0.00136780274585201,0.00466158554015995,"NCBI_Gene:100862399","PREDICTED:  uncharacterized LOC100862399 (LOC100862399), miscRNA.","chr2","+","MTA_TR0300005415.mm","Noncoding",93982408,93985335,30,null,"NA","MTA_TR0300005415.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862399 (LOC100862399), miscRNA.","chr2",100,100,{"$nulls":24},"NonCoding",9.65,8.59,8.74,6.94,6.99,6.36]
["TC0800000089.rn.1",6.9,5.34,2.949,"up",0.00137262048418576,0.0046734203117975,"KnowTID_00007413","Non-coding transcript identified by Luo, et al.","chr8","+","MTA_TR0900000300.mm","Noncoding",12071144,12072494,30,null,"NA","MTA_TR0900000300.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",6.47,6.83,7.39,4.99,5.07,5.96]
["TC0800001101.rn.1",6.4,5.92,1.395,"up",0.00137927392345676,0.00468963932753325,"ENSMUSG00000098748","N/A, ribosomal protein L7A (Rpl7a) pseudogene","chr8","+","MTA_TR0900003162.mm","Pseudogene",81420888,81421079,30,null,"NA","MTA_TR0900003162.mm","MTA2Rn6","N/A, ribosomal protein L7A (Rpl7a) pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",6.28,6.4,6.53,6.09,5.85,5.82]
["TC1000001307.rn.1",18.01,16.77,2.362,"up",0.00138246839981547,0.00469444420220146,"LOC102554793","uncharacterized LOC102554793","chr10","+","mRNARGD7628675_1","Noncoding",73718932,73725004,30,null,"NA","mRNARGD7628675_1","Rat Genome Database","uncharacterized LOC102554793","chr10",100,100,{"$nulls":24},"NonCoding",17.85,18.27,17.9,16.43,16.82,17.06]
["TC1600001245.rn.1",6.06,4.8,2.395,"up",0.00138388823005709,0.00469444420220146,"KnowTID_00002446","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16","-","MTA_TR1400005510.mm","Noncoding",11027896,11029141,30,null,"NA","MTA_TR1400005510.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",5.61,6.47,6.11,4.71,5,4.7]
["TC1800000697.rn.1",12.17,10.97,2.297,"up",0.00139000482482975,0.00471019042783895,"LOC100363296","ribosomal protein L13a-like","chr18","+","mRNARGD2684917_1","Pseudogene",61222157,61223218,30,null,"NA","mRNARGD2684917_1","Rat Genome Database","ribosomal protein L13a-like","chr18",100,100,{"$nulls":24},"Pseudogene",12.21,11.87,12.42,11.15,11.1,10.66]
["TC0300000498.rn.1",4.66,3.62,2.056,"up",0.00139260444007094,0.00471179387496468,"NONMMUG022842","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002644.mm","Noncoding",28693061,28695135,30,null,"NA","MTA_TR0200002644.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.57,4.63,4.78,3.66,3.27,3.94]
["TC0300000481.rn.1",9.57,8.25,2.497,"up",0.00139315466538979,0.00471179387496468,null,null,"chr3","+",null,"Pseudogene",23582405,23583022,30,null,"NA","ENSRNOT00000021212","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:28804594:28805211:1 gene:ENSRNOG00000015828 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",9.51,9.4,9.81,8.21,8.44,8.1]
["TC0400003140.rn.1",6.97,5.41,2.949,"up",0.00139796460058858,0.0047236030104696,"LOC102556147","uncharacterized LOC102556147","chr4","-","mRNARGD7661504_1","Noncoding",109761247,109779695,4,null,"NA","mRNARGD7661504_1","Rat Genome Database","uncharacterized LOC102556147","chr4",100,100,{"$nulls":24},"NonCoding",6.68,7.62,6.61,4.92,5.56,5.74]
["TC1000003567.rn.1",2.94,3.69,-1.682,"down",0.00139929079067461,0.004727164590589,"NONMMUG007287","Non-coding transcript identified by NONCODE: Linc","chr10","-","MTA_TR1100013186.mm","Noncoding",80786732,80789022,30,null,"NA","MTA_TR1100013186.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",2.97,3.04,2.81,3.96,3.61,3.51]
["TC0100002429.rn.1",3.4,3.7,-1.231,"down",0.00139993489961361,0.00472782767215416,"LOC102548665","uncharacterized LOC102548665","chr1","+","mRNARGD7592937_1","Noncoding",183730986,183733835,30,null,"NA","mRNARGD7592937_1","Rat Genome Database","uncharacterized LOC102548665","chr1",100,100,{"$nulls":24},"NonCoding",3.44,3.4,3.37,3.71,3.61,3.77]
["TC0700003110.rn.1",8.71,7.11,3.031,"up",0.00140202414667449,0.00473257330153299,"NONMMUG014496","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004486.mm","Noncoding",90209867,90212569,30,null,"NA","MTA_TR1500004486.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",8.66,8.57,8.9,6.85,6.67,7.82]
["TC1700001523.rn.1",4.95,3.96,1.986,"up",0.00140753063093021,0.00474300961976502,"LOC102551541","uncharacterized LOC102551541","chr17","-","mRNARGD7587474_1","Noncoding",21287665,21295067,30,null,"NA","mRNARGD7587474_1","Rat Genome Database","uncharacterized LOC102551541","chr17",100,100,{"$nulls":24},"NonCoding",4.95,4.71,5.19,4.03,3.95,3.89]
["TC0600000350.rn.1",5.97,5.05,1.892,"up",0.00140922624284584,0.00474688172667735,null,null,"chr6","+",null,"Noncoding",29148316,29163075,30,null,"NA","NONRATT047898","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",5.84,5.81,6.27,5.16,4.86,5.14]
["TC0500004095.rn.1",5.44,4.28,2.235,"up",0.00141455605029378,0.00475929753043836,"NONMMUG031413","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400014057.mm","Noncoding",166959637,166961883,30,null,"NA","MTA_TR0400014057.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",5.35,5.35,5.63,4.12,4.36,4.37]
["TC1000002701.rn.1",3.98,4.55,-1.485,"down",0.00141785551091227,0.00476393966732244,"sumee","Unannotated AceView Transcript","chr10","-","sumee.aSep08","Noncoding",35371586,35382990,30,null,"NA","sumee.aSep08","Ace View","Unannotated AceView Transcript","chr10",100,100,{"$nulls":24},"NonCoding",4.09,4.06,3.78,4.49,4.55,4.6]
["TC0400002315.rn.1",5.89,4.93,1.945,"up",0.00141829427301256,0.00476449232575927,"LOC102555728","uncharacterized LOC102555728","chr4","-","mRNARGD7588768_1","Noncoding",21880315,21892500,30,null,"NA","mRNARGD7588768_1","Rat Genome Database","uncharacterized LOC102555728","chr4",100,100,{"$nulls":24},"NonCoding",5.81,6.08,5.79,4.87,4.57,5.35]
["TC0600001675.rn.1",10.68,11.12,-1.357,"down",0.00142144280007579,0.00477113015022473,"Nucks1","nuclear casein kinase and cyclin-dependent kinase substrate 1","chr6","+","Nucks1.aSep08-unspliced","Pseudogene",143661164,143662923,30,null,"NA","Nucks1.aSep08-unspliced","Ace View","nuclear casein kinase and cyclin-dependent kinase substrate 1","chr6",100,100,{"$nulls":24},"Pseudogene",10.53,10.66,10.85,11.13,11.1,11.14]
["TC0800003423.rn.1",4.93,4.3,1.548,"up",0.0014216435241243,0.00477113015022473,"LOC102550415","uncharacterized LOC102550415","chr8","-","mRNARGD7628654_1","Noncoding",118799287,118802479,30,null,"NA","mRNARGD7628654_1","Rat Genome Database","uncharacterized LOC102550415","chr8",100,100,{"$nulls":24},"NonCoding",5.05,4.89,4.84,4.46,4.32,4.12]
["TC0800000329.rn.1",5.44,4.75,1.613,"up",0.00142246047253998,0.00477202797769254,null,null,"chr8","+",null,"Pseudogene",33068849,33069269,30,null,"NA","ENSRNOT00000074066","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:33089947:33090367:1 gene:ENSRNOG00000048234 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",5.59,5.4,5.34,4.76,4.83,4.66]
["TC0200000776.rn.1",7.85,9.84,-3.972,"down",0.00142471825750886,0.00477683475220738,"NONMMUG026064","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2","+","MTA_TR0300005437.mm","Noncoding",93700086,93701803,30,null,"NA","MTA_TR0300005437.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2",100,100,{"$nulls":24},"NonCoding",7.83,7.73,7.98,9.75,10.03,9.73]
["TC1600000315.rn.1",4.69,5.18,-1.404,"down",0.00143130151356842,0.00479335619668344,"KnowTID_00007297","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16","+","MTA_TR0800007312.mm","Noncoding",21163387,21163846,30,null,"NA","MTA_TR0800007312.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",4.59,4.83,4.65,5.22,5.33,5]
["TC0500003500.rn.1",4.85,5.62,-1.705,"down",0.00143165736472387,0.00479362376303361,null,null,"chr5","-",null,"Noncoding",138462621,138462829,30,null,"NA","NONRATT045384","NONCODE","Non-coding transcript identified by NONCODE","chr5",100,100,{"$nulls":24},"NonCoding",4.98,4.64,4.93,5.6,5.53,5.73]
["TC1800000867.rn.1",8.95,10.34,-2.621,"down",0.00143259288982069,0.00479583177665739,null,null,"chr18","+",null,"Noncoding",74164722,74164960,30,null,"NA","NONRATT026280","NONCODE","Non-coding transcript identified by NONCODE","chr18",100,100,{"$nulls":24},"NonCoding",8.91,8.94,9,10.28,10.64,10.09]
["TC0200002093.rn.1",11.12,10.48,1.558,"up",0.00143579202055867,0.00480283905047654,null,null,"chr2","+",null,"Pseudogene",224925707,224926274,30,null,"NA","ENSRNOT00000015314","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:242965052:242965619:1 gene:ENSRNOG00000024306 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",11.23,11.32,10.81,10.45,10.41,10.57]
["TC0700002245.rn.1",13.16,13.77,-1.526,"down",0.00143921873350501,0.00481152205922162,"LOC691186","similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)","chr7","-","LOC691186.aSep08-unspliced","Pseudogene",14761849,14763056,50,null,"NA","LOC691186.aSep08-unspliced","Ace View","similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)","chr7",100,100,{"$nulls":24},"Pseudogene",13.26,12.99,13.23,13.86,13.84,13.6]
["TC0500002771.rn.1",18.02,18.48,-1.376,"down",0.00144006903508192,0.00481343836990726,"LOC685400","similar to glyceraldehyde-3-phosphate dehydrogenase","chr5","-","LOC685400.aSep08-unspliced","Pseudogene",71866900,71868184,40,null,"NA","LOC685400.aSep08-unspliced","Ace View","similar to glyceraldehyde-3-phosphate dehydrogenase","chr5",100,100,{"$nulls":24},"Pseudogene",18.02,18.02,18.01,18.49,18.55,18.39]
["TC0700002530.rn.1",4.52,3.96,1.474,"up",0.00144502876101632,0.004826301597311,"NONMMUG004456","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1000008769.mm","Noncoding",35914452,35918419,30,null,"NA","MTA_TR1000008769.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",4.42,4.42,4.73,3.92,3.92,4.03]
["TC0300000596.rn.1",6.1,4.79,2.479,"up",0.00145632668140975,0.00485097809832575,"NONMMUG023002","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002846.mm","Noncoding",38480327,38484036,30,null,"NA","MTA_TR0200002846.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.58,6.24,6.47,4.91,4.49,4.97]
["TC0800001894.rn.1",5.05,4.32,1.659,"up",0.0014625834555824,0.00486622049548398,"NONMMUG042058","Non-coding transcript identified by NONCODE: Linc","chr8","-","MTA_TR0900005593.mm","Noncoding",5433719,5435629,30,null,"NA","MTA_TR0900005593.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",5.01,5.03,5.11,3.95,4.47,4.54]
["TC0100007198.rn.1",6.5,7.24,-1.67,"down",0.00147377926133382,0.00489250542407904,"LOC102551693","uncharacterized LOC102551693","chr1","-","mRNARGD7610775_1","Noncoding",222740268,222746061,130,null,"NA","mRNARGD7610775_1","Rat Genome Database","uncharacterized LOC102551693","chr1",100,100,{"$nulls":24},"NonCoding",6.57,6.37,6.57,7.42,7.05,7.26]
["TC0200003140.rn.1",4.58,6.6,-4.056,"down",0.00147851923869816,0.00490421189525028,"LOC102555117","uncharacterized LOC102555117","chr2","-","mRNARGD7738491_1","Noncoding",76264998,76269736,30,null,"NA","mRNARGD7738491_1","Rat Genome Database","uncharacterized LOC102555117","chr2",100,100,{"$nulls":24},"NonCoding",4.81,4.36,4.56,6.13,6.85,6.82]
["TC0100001812.rn.1",5.58,6.79,-2.313,"down",0.00148475842462379,0.00491851799051443,"NONMMUG038417","Non-coding transcript identified by NONCODE: Antisense","chr1","+","MTA_TR0700003992.mm","Noncoding",139990317,139992306,30,null,"NA","MTA_TR0700003992.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",5.52,5.51,5.71,6.85,6.91,6.6]
["TC0X00001318.rn.1",9.16,7.08,4.228,"up",0.00148492312618282,0.00491851799051443,"MGI:5012437","PREDICTED:  predicted gene, 20252 (Gm20252), miscRNA.","chrX","+","MTA_TR0X00006638.mm","Noncoding",157323638,157331255,30,null,"NA","MTA_TR0X00006638.mm","MTA2Rn6","PREDICTED:  predicted gene, 20252 (Gm20252), miscRNA.","chrX",100,100,{"$nulls":24},"NonCoding",9.18,8.96,9.35,7.43,7.09,6.71]
["TC0700002528.rn.1",5.47,6.32,-1.803,"down",0.00148579417502334,0.00491895568079553,"LOC102556193","uncharacterized LOC102556193","chr7","-","mRNARGD7517291_1","Noncoding",35727302,35739442,50,null,"NA","mRNARGD7517291_1","Rat Genome Database","uncharacterized LOC102556193","chr7",100,100,{"$nulls":24},"NonCoding",5.29,5.63,5.5,6.36,6.62,5.98]
["TC0700002954.rn.1",8.53,7.21,2.497,"up",0.00149847043528205,0.00494207896929647,"ENSMUSG00000083944","predicted gene 14733, pseudogene similar to part of ribosomal protein L14 (Rpl14)","chr7","-","MTA_TR0X00007091.mm","Pseudogene",72783499,72783631,30,null,"NA","MTA_TR0X00007091.mm","MTA2Rn6","predicted gene 14733, pseudogene similar to part of ribosomal protein L14 (Rpl14)","chr7",100,100,{"$nulls":24},"Pseudogene",8.87,8.65,8.08,7.2,7.34,7.08]
["TC1300000311.rn.1",4.16,3.71,1.366,"up",0.00150199994571082,0.00495089963129842,"KnowTID_00000187","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr13","+","MTA_TR0100003911.mm","Noncoding",51263201,51265306,30,null,"NA","MTA_TR0100003911.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr13",100,100,{"$nulls":24},"NonCoding",4.13,4.31,4.04,3.86,3.64,3.62]
["TC0100007902.rn.1",4.3,4.81,-1.424,"down",0.00150354259659168,0.00495316488628752,"LOC102550834","uncharacterized LOC102550834","chr1","-","mRNARGD7570634_1","Noncoding",274040628,274047080,40,null,"NA","mRNARGD7570634_1","Rat Genome Database","uncharacterized LOC102550834","chr1",100,100,{"$nulls":24},"NonCoding",4.32,4.32,4.26,4.69,4.73,5]
["TC0200000160.rn.1",6.4,9.06,-6.32,"down",0.00150667963194127,0.00496067700652991,"NONMMUG011608","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR1300002877.mm","Noncoding",22922409,22923753,30,null,"NA","MTA_TR1300002877.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.46,6.57,6.18,8.15,8.58,10.46]
["TC0800001314.rn.1",4.44,3.89,1.464,"up",0.00151140896891759,0.00497247825739914,"NONMMUG043620","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","+","MTA_TR0900003755.mm","Noncoding",102993540,102997583,30,null,"NA","MTA_TR0900003755.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",4.38,4.48,4.47,3.77,3.8,4.1]
["TC0300004612.rn.1",4.63,5.21,-1.495,"down",0.00152081574066673,0.00499302404670606,"LOC102553067","uncharacterized LOC102553067","chr3","-","mRNARGD7735843_1","Noncoding",153543012,153547751,30,null,"NA","mRNARGD7735843_1","Rat Genome Database","uncharacterized LOC102553067","chr3",100,100,{"$nulls":24},"NonCoding",4.51,4.79,4.59,5.4,4.97,5.27]
["TC0400001584.rn.1",6.81,8.08,-2.412,"down",0.0015239375492217,0.00499916244734143,null,null,"chr4","+",null,"Noncoding",145682321,145682815,30,null,"NA","NONRATT040228","NONCODE","Non-coding transcript identified by NONCODE","chr4",100,100,{"$nulls":24},"NonCoding",6.54,7.06,6.83,8.04,8,8.2]
["TC2000000346.rn.1",6.9,7.66,-1.693,"down",0.00152436780341683,0.00499916244734143,"LOC102548069","uncharacterized LOC102548069","chr20","+","mRNARGD7570470_1","Noncoding",9254348,9257033,30,null,"NA","mRNARGD7570470_1","Rat Genome Database","uncharacterized LOC102548069","chr20",100,100,{"$nulls":24},"NonCoding",6.85,6.93,6.91,8.01,7.55,7.41]
["TC0200002424.rn.1",4.96,5.49,-1.444,"down",0.00152862566587935,0.00500636433672515,"NONMMUG028223","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2","+","MTA_TR0300005046.mm","Noncoding",258975969,258985339,80,null,"NA","MTA_TR0300005046.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2",100,100,{"$nulls":24},"NonCoding",5.06,5.06,4.76,5.55,5.34,5.58]
["TC0100000101.rn.1",10.79,9.29,2.828,"up",0.00153058161615654,0.00500899270050024,null,null,"chr1","+",null,"Noncoding",8463036,8463613,30,null,"NA","NONRATT000047","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",10.79,11.28,10.29,8.91,9.36,9.6]
["TC0600002108.rn.1",4.56,5.38,-1.765,"down",0.00153803781380204,0.00502204038788632,"LOC102550621","uncharacterized LOC102550621","chr6","-","mRNARGD7630014_1","Noncoding",33681079,33687377,80,null,"NA","mRNARGD7630014_1","Rat Genome Database","uncharacterized LOC102550621","chr6",100,100,{"$nulls":24},"NonCoding",4.63,4.66,4.38,5.32,5.42,5.4]
["TC0400002674.rn.1",6.61,5.26,2.549,"up",0.00153993578029592,0.00502313210763267,"NONMMUG034987","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600006858.mm","Noncoding",62410723,62411508,30,null,"NA","MTA_TR0600006858.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",7.08,6,6.75,5.29,5.53,4.97]
["TC0200002952.rn.1",6.5,8.49,-3.972,"down",0.00154259516188324,0.00502841444118479,"KnowTID_00002231","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR1300007892.mm","Noncoding",49082962,49084311,30,null,"NA","MTA_TR1300007892.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",6.29,6.44,6.76,8.22,8.75,8.5]
["TC0400003723.rn.1",3.15,3.54,-1.31,"down",0.00154413073227968,0.00503094521687457,"NONMMUG036537","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr4","-","MTA_TR0600010170.mm","Noncoding",157037438,157041191,30,null,"NA","MTA_TR0600010170.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr4",100,100,{"$nulls":24},"NonCoding",3.11,3.24,3.11,3.66,3.39,3.56]
["TC1200000855.rn.1",5.45,6.87,-2.676,"down",0.00154961553285727,0.00504372707912004,"Miat","myocardial infarction associated transcript (non-protein coding)","chr12","+","NR_111959","Noncoding",50446417,50461861,110,null,102552664,"NR_111959","RefSeq","Rattus norvegicus myocardial infarction associated transcript (non-protein coding) (Miat), long non-coding RNA.","chr12",100,100,{"$nulls":5},"NR_111959","GO:0010001","glial cell differentiation","not recorded","NR_111959","GO:0005634","nucleus","not recorded",{"$nulls":11},"NonCoding",5.6,5.41,5.34,6.54,6.83,7.23]
["TC0500002159.rn.1",6.51,7.05,-1.454,"down",0.00155211225977552,0.0050487660089461,"D030018L15Rik","nuclear receptor coactivator 2 pseudogene","chr5","-","NR_003627","Noncoding",5619800,5696196,210,"15 F1|15",402773,"NR_003627","RefSeq","Mus musculus RIKEN cDNA D030018L15 gene (D030018L15Rik), non-coding RNA.","chr5",100,100,null,null,"NR_003627","Mm.484216","fertilized ovum| ovary|oocyte| zygote",{"$nulls":19},"NonCoding",6.56,6.36,6.6,6.97,7.24,6.95]
["TC0200004596.rn.1",5.62,4.02,3.031,"up",0.00157621166395232,0.00510446920479414,"klashee","Unannotated AceView Transcript","chr2","-","klashee.aSep08","Noncoding",225960007,225984143,90,null,"NA","klashee.aSep08","Ace View","Unannotated AceView Transcript","chr2",100,100,{"$nulls":24},"NonCoding",5.2,5.43,6.22,3.97,4.09,4]
["TC0300001433.rn.1",5.46,7.19,-3.317,"down",0.00158567402571407,0.00511852919854739,"NCBI_Gene:100862246","PREDICTED:  uncharacterized LOC100862246 (LOC100862246), miscRNA.","chr3","+","MTA_TR0200005384.mm","Noncoding",105212095,105235542,30,null,"NA","MTA_TR0200005384.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862246 (LOC100862246), miscRNA.","chr3",100,100,{"$nulls":24},"NonCoding",5.56,5.5,5.32,6.97,7.36,7.25]
["TC0600002437.rn.1",9.78,8.41,2.585,"up",0.00159337886950787,0.00513377734179522,null,null,"chr6","-",null,"Noncoding",72641258,72641511,30,null,"NA","NONRATT048091","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",9.65,10.13,9.56,8.32,8.38,8.52]
["TC0600001934.rn.1",4.92,6.78,-3.63,"down",0.00159353678124229,0.00513377734179522,"LOC102551745","uncharacterized LOC102551745","chr6","-","mRNARGD7714550_1","Noncoding",15758232,15777939,30,null,"NA","mRNARGD7714550_1","Rat Genome Database","uncharacterized LOC102551745","chr6",100,100,{"$nulls":24},"NonCoding",4.92,4.54,5.29,6.72,7.26,6.37]
["TC0800001175.rn.1",6.85,8,-2.219,"down",0.00159979398779568,0.00514439492076986,"NCBI_Gene:100862063","PREDICTED:  uncharacterized LOC100862063 (LOC100862063), miscRNA.","chr8","+","MTA_TR0900003382.mm","Noncoding",87209534,87212522,30,null,"NA","MTA_TR0900003382.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862063 (LOC100862063), miscRNA.","chr8",100,100,{"$nulls":24},"NonCoding",7.09,6.37,7.08,7.92,8.26,7.81]
["TC0600001565.rn.1",7.77,8.9,-2.189,"down",0.00161060962860558,0.00516197414363608,"NCBI_Gene:100861856","PREDICTED:  uncharacterized LOC100861856 (LOC100861856), miscRNA.","chr6","+","MTA_TR1200003497.mm","Noncoding",135044835,135046060,30,null,"NA","MTA_TR1200003497.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861856 (LOC100861856), miscRNA.","chr6",100,100,{"$nulls":24},"NonCoding",7.87,7.6,7.84,8.72,9.06,8.92]
["TC0100004391.rn.1",6.57,7.03,-1.376,"down",0.00161559929331127,0.00517033443701365,"RGD1560234","arginine/serine-rich coiled-coil 1","chr1","-","ENSRNOT00000058849","Pseudogene",43933275,43934602,40,"2q31",361956,"ENSRNOT00000058849","ENSEMBL","ensembl:known chromosome:Rnor_5.0:1:45262968:45264205:-1 gene:ENSRNOG00000004144 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,"ENSRNOT00000058849","Q5PPJ2","ENSRNOT00000058849","Rn.73117","brain| connective tissue| eye| heart| kidney| placenta| testis| thymus| juvenile| adult","ENSRNOT00000058849","GO:0000380","alternative mRNA splicing, via spliceosome","inferred from electronic annotation","ENSRNOT00000058849","GO:0005634","nucleus","not recorded",{"$nulls":11},"Pseudogene",6.64,6.64,6.43,6.96,7.12,7.02]
["TC1700000542.rn.1",13.25,12.75,1.414,"up",0.00161971789303182,0.00517874461988878,null,null,"chr17","+",null,"Pseudogene",36327307,36327788,30,null,"NA","ENSRNOT00000049560","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:37635026:37635507:1 gene:ENSRNOG00000030989 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",13.32,13.22,13.22,12.6,12.96,12.7]
["TC1400000917.rn.1",4.72,5.63,-1.879,"down",0.00162097152603302,0.00518084569985641,"bloyjey","Unannotated AceView Transcript","chr14","+","bloyjey.aSep08","Noncoding",85217779,85228127,50,null,"NA","bloyjey.aSep08","Ace View","Unannotated AceView Transcript","chr14",100,100,{"$nulls":24},"NonCoding",4.71,4.84,4.61,5.35,5.46,6.09]
["TC1400000937.rn.1",4.79,4.14,1.569,"up",0.00162527771076363,0.00519079164269036,"KnowTID_00001104","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR1100000357.mm","Noncoding",86099346,86100671,30,null,"NA","MTA_TR1100000357.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",5,4.75,4.61,4.17,4,4.25]
["TC0500003626.rn.1",15.78,14.93,1.803,"up",0.00163032440826216,0.00520021397280976,"Rpl37a-ps1","ENCODES a protein that exhibits metal ion binding (inferred) AND  structural constituent of ribosome (inferred) AND  INVOLVED IN translation (inferred) AND  FOUND IN ribosome (inferred) AND  INTERACTS WITH 6-propyl-2-thiouracil AND  (-)-demecolcine (ortholog) AND  (-)-epigallocatechin 3-gallate (ortholog)","chr5","-","mRNARGD6717876_1","Pseudogene",145071367,145071453,30,null,"NA","mRNARGD6717876_1","Rat Genome Database","ENCODES a protein that exhibits metal ion binding (inferred) AND  structural constituent of ribosome (inferred) AND  INVOLVED IN translation (inferred) AND  FOUND IN ribosome (inferred) AND  INTERACTS WITH 6-propyl-2-thiouracil AND  (-)-demecolcine (ortholog) AND  (-)-epigallocatechin 3-gallate (ortholog)","chr5",100,100,{"$nulls":24},"Pseudogene",16.02,15.44,15.87,15.08,15.09,14.62]
["TC0600002749.rn.1",5.09,6.8,-3.272,"down",0.00163125786904887,0.00520223617463703,"LOC102547094","uncharacterized LOC102547094","chr6","-","mRNARGD7709105_1","Noncoding",103193271,103194523,30,null,"NA","mRNARGD7709105_1","Rat Genome Database","uncharacterized LOC102547094","chr6",100,100,{"$nulls":24},"NonCoding",4.9,4.59,5.79,7.13,6.95,6.33]
["TC1200001270.rn.1",7.05,4.97,4.228,"up",0.00163341832240974,0.00520721410875015,"LOC102554946","uncharacterized LOC102554946","chr12","-","mRNARGD7626940_1","Noncoding",20539531,20545975,40,null,"NA","mRNARGD7626940_1","Rat Genome Database","uncharacterized LOC102554946","chr12",100,100,{"$nulls":24},"NonCoding",6.94,8.04,6.17,5.27,4.74,4.89]
["TC0X00001776.rn.1",17.29,16.41,1.84,"up",0.00164041472710914,0.00522163683986622,null,null,"chrX","-",null,"Noncoding",50490727,50490918,30,null,"NA","NONRATT059665","NONCODE","Non-coding transcript identified by NONCODE","chrX",100,100,{"$nulls":24},"NonCoding",17.25,17.63,17,16.36,16.53,16.33]
["TC1600001387.rn.1",3.91,3.22,1.613,"up",0.00164355910942568,0.00522611482515715,"NONMMUG040854","Non-coding transcript identified by NONCODE: Antisense","chr16","-","MTA_TR0800002335.mm","Noncoding",20429683,20432596,30,null,"NA","MTA_TR0800002335.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr16",100,100,{"$nulls":24},"NonCoding",4.01,3.84,3.87,3.2,3.44,3.01]
["TC0200002784.rn.1",6.48,5.36,2.173,"up",0.0016564078215617,0.00525451563463784,"NONMMUG011827","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR1300007485.mm","Noncoding",33956091,33961418,30,null,"NA","MTA_TR1300007485.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.15,6.84,6.46,5.53,5.2,5.36]
["TC1700002308.rn.1",7.51,5.93,2.99,"up",0.00166767247866502,0.00527849585810997,"NONMMUG022135","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","-","MTA_TR0200010614.mm","Noncoding",85714059,85717308,30,null,"NA","MTA_TR0200010614.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",7.09,7.44,8.01,5.38,5.91,6.49]
["TC0600002963.rn.1",4.02,3.73,1.223,"up",0.00167375945350333,0.0052892260263428,"LOC102546459","uncharacterized LOC102546459","chr6","-","mRNARGD7581834_1","Noncoding",117482743,117515649,55,null,"NA","mRNARGD7581834_1","Rat Genome Database","uncharacterized LOC102546459","chr6",100,100,{"$nulls":24},"NonCoding",4.04,3.99,4.02,3.75,3.63,3.81]
["TC1400000834.rn.1",6.38,7.19,-1.753,"down",0.00168186305885438,0.00530711048053759,"NONMMUG032186","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500007953.mm","Noncoding",81859546,81861031,30,null,"NA","MTA_TR0500007953.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",6.35,6.55,6.24,7.15,7.22,7.21]
["TC2000001671.rn.1",4.09,3.57,1.434,"up",0.00168458356878693,0.00531279977730533,"LOC102551158","uncharacterized LOC102551158","chr20","-","mRNARGD7575369_1","Noncoding",44670707,44672044,30,null,"NA","mRNARGD7575369_1","Rat Genome Database","uncharacterized LOC102551158","chr20",100,100,{"$nulls":24},"NonCoding",4.24,4.17,3.87,3.57,3.49,3.65]
["TC0300004052.rn.1",12.4,11.51,1.853,"up",0.00168875618087117,0.005320948229877,"LOC688064","similar to splicing factor arginine/serine-rich 10 (transformer 2 homolog Drosophila)","chr3","-","mRNARGD6681992_1","Pseudogene",114687273,114688631,30,null,"NA","mRNARGD6681992_1","Rat Genome Database","similar to splicing factor arginine/serine-rich 10 (transformer 2 homolog Drosophila)","chr3",100,100,{"$nulls":24},"Pseudogene",12.31,12.44,12.46,11.38,11.62,11.53]
["TC0200000055.rn.1",10.15,12.46,-4.959,"down",0.00169307593263501,0.00533115628978598,"LOC102549789","uncharacterized LOC102549789","chr2","+","mRNARGD7645338_1","Noncoding",5635240,5825400,80,null,"NA","mRNARGD7645338_1","Rat Genome Database","uncharacterized LOC102549789","chr2",100,100,{"$nulls":24},"NonCoding",10.09,10.26,10.11,12.32,12.47,12.59]
["TC0200003215.rn.1",6.47,5.59,1.84,"up",0.00169316615340218,0.00533115628978598,null,null,"chr2","-",null,"Pseudogene",86140655,86140925,30,null,"NA","ENSRNOT00000067642","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:105812257:105812527:-1 gene:ENSRNOG00000043076 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",6.69,6.38,6.34,5.73,5.43,5.62]
["TC1000002216.rn.1",7.54,6.97,1.485,"up",0.00169378823073762,0.00533118234392883,null,null,"chr10","-",null,"Pseudogene",5444411,5445194,30,null,"NA","ENSRNOT00000003575","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:4265033:4265816:-1 gene:ENSRNOG00000002661 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",7.58,7.48,7.57,6.86,7.2,6.84]
["TC0200000159.rn.1",5.08,7.6,-5.736,"down",0.00170220643603043,0.00534508821407892,"NONMMUG011607","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR1300002876.mm","Noncoding",22917286,22919239,30,null,"NA","MTA_TR1300002876.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.39,5.09,4.76,6.79,7.02,8.98]
["TC0800000227.rn.1",4.54,4.81,-1.206,"down",0.00170740527822848,0.00535753921389215,"NONMMUG042243","Non-coding transcript identified by NONCODE: Antisense","chr8","+","MTA_TR0900000589.mm","Noncoding",22302657,22305380,30,null,"NA","MTA_TR0900000589.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr8",100,100,{"$nulls":24},"NonCoding",4.54,4.52,4.57,4.82,4.89,4.73]
["TC0400000461.rn.1",5.42,4.34,2.114,"up",0.00171157353557538,0.00536770967439609,"NONMMUG034748","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600000563.mm","Noncoding",49117232,49118302,30,null,"NA","MTA_TR0600000563.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",5.09,5.46,5.72,4.3,4.27,4.46]
["TC0100007512.rn.1",3.88,3.29,1.505,"up",0.00171411090841535,0.00536906652914112,"KnowTID_00004226","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR1900004617.mm","Noncoding",247179345,247180978,30,null,"NA","MTA_TR1900004617.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",3.95,4.06,3.63,3.17,3.29,3.42]
["TC1500002292.rn.1",6.04,4.57,2.77,"up",0.0017156801712622,0.00537179182707114,"LOC100909907","uncharacterized LOC100909907","chr15","-","mRNARGD6500879_1","Noncoding",87660123,87666689,30,null,"NA","mRNARGD6500879_1","Rat Genome Database","uncharacterized LOC100909907","chr15",100,100,{"$nulls":24},"NonCoding",6,5.67,6.45,4.64,4.4,4.68]
["TC0100005248.rn.1",4.38,5.27,-1.853,"down",0.00171627682000143,0.00537179182707114,"LOC102546536","uncharacterized LOC102546536","chr1","-","mRNARGD7507046_1","Noncoding",93119500,93126875,30,null,"NA","mRNARGD7507046_1","Rat Genome Database","uncharacterized LOC102546536","chr1",100,100,{"$nulls":24},"NonCoding",4.65,4.28,4.2,5.46,5.38,4.97]
["TC1000004277.rn.1",6.85,7.72,-1.828,"down",0.00171882132769439,0.00537684950177908,"NONMMUG008313","Non-coding transcript identified by NONCODE: Linc","chr10","-","MTA_TR1100016193.mm","Noncoding",109763647,109766733,50,null,"NA","MTA_TR1100016193.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",7.02,6.56,6.96,7.6,7.74,7.82]
["TC1400000245.rn.1",5.29,4.31,1.972,"up",0.00171939225207774,0.0053776670527264,"LOC680943","similar to 60S ribosomal protein L12","chr14","+","mRNARGD6766139_1","Noncoding",16739677,16750488,30,null,"NA","mRNARGD6766139_1","Rat Genome Database","similar to 60S ribosomal protein L12","chr14",100,100,{"$nulls":24},"NonCoding",5.42,4.98,5.48,4.26,4.54,4.13]
["TC0400000637.rn.1",10.55,11.65,-2.144,"down",0.0017279943315976,0.00539388850569307,"LOC100911473","uncharacterized LOC100911473","chr4","+","mRNARGD6492763_1","Noncoding",62993367,63011240,30,null,"NA","mRNARGD6492763_1","Rat Genome Database","uncharacterized LOC100911473","chr4",100,100,{"$nulls":24},"NonCoding",10.55,10.64,10.45,11.28,11.84,11.83]
["TC1900000636.rn.1",14.46,13.7,1.693,"up",0.00173071642347691,0.00539640514210125,"LOC100911903","uncharacterized LOC100911903","chr19","+","mRNARGD6490293_1","Noncoding",45912195,45926936,30,null,"NA","mRNARGD6490293_1","Rat Genome Database","uncharacterized LOC100911903","chr19",100,100,{"$nulls":24},"NonCoding",14.42,14.52,14.45,13.7,13.72,13.68]
["TC0300003788.rn.1",7.75,9.02,-2.412,"down",0.00173100497409849,0.00539640514210125,"NONMMUG024039","Non-coding transcript identified by NONCODE: Linc","chr3","-","MTA_TR0200015012.mm","Noncoding",94609351,94611107,30,null,"NA","MTA_TR0200015012.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",7.69,7.95,7.62,9.26,8.93,8.86]
["TC0200004291.rn.1",4.53,4.22,1.24,"up",0.00173128581296012,0.00539640514210125,"NONMMUG027383","Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300008486.mm","Noncoding",200586880,200587386,30,null,"NA","MTA_TR0300008486.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.59,4.52,4.48,4.23,4.15,4.29]
["TC0400002167.rn.1",12.65,11.14,2.848,"up",0.00173660599781008,0.0054061976322507,"NONMMUG031984","Non-coding transcript identified by NONCODE: Antisense","chr4","-","MTA_TR0500000635.mm","Noncoding",6735684,6736049,21,null,"NA","MTA_TR0500000635.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",12.34,13.31,12.29,11.09,10.95,11.38]
["TC0700003044.rn.1",4.95,5.64,-1.613,"down",0.00173740382510875,0.00540630315626064,"LOC100911656","uncharacterized LOC100911656","chr7","-","mRNARGD6491681_1","Noncoding",78090197,78105097,30,null,"NA","mRNARGD6491681_1","Rat Genome Database","uncharacterized LOC100911656","chr7",100,100,{"$nulls":24},"NonCoding",4.98,4.97,4.9,5.64,5.87,5.4]
["TC1600001546.rn.1",6.7,5.87,1.778,"up",0.00173757357212614,0.00540630315626064,"flerger","Unannotated AceView Transcript","chr16","-","flerger.aSep08-unspliced","Noncoding",35927852,35938562,60,null,"NA","flerger.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr16",100,100,{"$nulls":24},"NonCoding",6.45,6.5,7.14,5.77,5.96,5.89]
["TC1600001054.rn.1",10.01,10.65,-1.558,"down",0.00174457600013692,0.00541838542792391,null,null,"chr16","+",null,"Noncoding",86672539,86675075,30,null,"NA","NONRATT022820","NONCODE","Non-coding transcript identified by NONCODE","chr16",100,100,{"$nulls":24},"NonCoding",10.02,10.08,9.93,10.83,10.69,10.43]
["TC1000002549.rn.1",4.43,5,-1.485,"down",0.00174869150860534,0.00542534741846461,"NONMMUG005771","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1100009577.mm","Noncoding",20728850,20735960,30,null,"NA","MTA_TR1100009577.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",4.26,4.65,4.39,4.8,5.09,5.1]
["TC0200001336.rn.1",6.37,5.4,1.959,"up",0.00174955201608904,0.00542607892724205,"NONMMUG026788","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300001573.mm","Noncoding",164365490,164366398,30,null,"NA","MTA_TR0300001573.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.26,6.4,6.45,5.42,5.03,5.76]
["TC1000000339.rn.1",4.67,4.08,1.505,"up",0.00175283448170754,0.00543334899745569,"NONMMUG005737","Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1100001232.mm","Noncoding",19045825,19048113,30,null,"NA","MTA_TR1100001232.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",4.64,4.77,4.61,4.16,3.8,4.28]
["TC1700000967.rn.1",4.44,5.96,-2.868,"down",0.00176717311081435,0.00545637470813297,"ENSMUSG00000065824","predicted gene, 26315, Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","+","MTA_TR0200010220.mm","Noncoding",75067521,75067568,24,null,"NA","MTA_TR0200010220.mm","MTA2Rn6","predicted gene, 26315, Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",4.49,4.31,4.53,5.45,5.63,6.81]
["TC1900001402.rn.1",4.18,3.36,1.765,"up",0.00178131688789608,0.00548347610484544,"NONMMUG041543","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19","-","MTA_TR0800004250.mm","Noncoding",40415471,40420773,30,null,"NA","MTA_TR0800004250.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19",100,100,{"$nulls":24},"NonCoding",3.9,4.1,4.53,3.44,3.27,3.37]
["TC0400003242.rn.1",3.9,4.48,-1.495,"down",0.00178917452612307,0.00550164391416248,"NONMMUG035865","Non-coding transcript identified by NONCODE: Antisense","chr4","-","MTA_TR0600008665.mm","Noncoding",117846856,117851842,30,null,"NA","MTA_TR0600008665.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",4.15,3.81,3.75,4.41,4.42,4.6]
["TC0X00000748.rn.1",3.94,3.4,1.454,"up",0.00178958851192537,0.00550164391416248,"NONMMUG045667","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00003144.mm","Noncoding",80287004,80289432,30,null,"NA","MTA_TR0X00003144.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",3.85,3.93,4.04,3.41,3.3,3.49]
["TC0400000881.rn.1",5.56,4.8,1.693,"up",0.00179717306996582,0.00551396337221701,"LOC100910645","prothymosin alpha-like","chr4","+","mRNARGD6497302_1","Pseudogene",78977315,78978065,30,null,"NA","mRNARGD6497302_1","Rat Genome Database","prothymosin alpha-like","chr4",100,100,{"$nulls":24},"Pseudogene",5.66,5.48,5.55,4.64,5.03,4.73]
["TC0900002330.rn.1",6.66,5.38,2.428,"up",0.00179838833463553,0.00551550207643958,"NONMMUG001128","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR0100008551.mm","Noncoding",86560839,86562718,30,null,"NA","MTA_TR0100008551.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",6.41,6.77,6.81,5.03,5.14,5.98]
["TC0900002592.rn.1",12.54,10.87,3.182,"up",0.00180298962873448,0.00552422613675252,"LOC102552879","uncharacterized LOC102552879","chr9","-","mRNARGD7509464_1","Noncoding",113521701,113531121,30,null,"NA","mRNARGD7509464_1","Rat Genome Database","uncharacterized LOC102552879","chr9",100,100,{"$nulls":24},"NonCoding",12.22,12.68,12.73,10.29,10.85,11.48]
["TC0100000383.rn.1",4.22,4.55,-1.257,"down",0.0018044462837417,0.00552627581009821,"NONMMUG011331","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR1300006408.mm","Noncoding",37230005,37232597,30,null,"NA","MTA_TR1300006408.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.1,4.31,4.26,4.56,4.52,4.58]
["TC1900000420.rn.1",4.66,5.69,-2.042,"down",0.00180679189362498,0.00552882652805036,"KnowTID_00007305","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr19","+","MTA_TR0800007753.mm","Noncoding",31943089,31943880,30,null,"NA","MTA_TR0800007753.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr19",100,100,{"$nulls":24},"NonCoding",4.78,4.53,4.67,5.38,6.09,5.61]
["TC1000003452.rn.1",9.97,10.82,-1.803,"down",0.00180763886223978,0.00553012972097337,null,null,"chr10","-",null,"Pseudogene",72247207,72247448,30,null,"NA","ENSRNOT00000074522","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:72154276:72154517:-1 gene:ENSRNOG00000046186 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",10.24,9.87,9.81,10.75,11.08,10.64]
["TC1700001536.rn.1",5.04,4.35,1.613,"up",0.0018272672872833,0.00556965433363717,"LOC102547930","uncharacterized LOC102547930","chr17","-","mRNARGD7545622_1","Noncoding",22049476,22056910,30,null,"NA","mRNARGD7545622_1","Rat Genome Database","uncharacterized LOC102547930","chr17",100,100,{"$nulls":24},"NonCoding",4.96,5.26,4.89,4.37,4.31,4.37]
["TC0400001805.rn.1",4.14,5.28,-2.204,"down",0.00182781982011005,0.00557036106932135,"LOC100911133","null","chr4","+","mRNARGD6494605_t00","Noncoding",159263398,159288014,40,null,"NA","mRNARGD6494605_t00","Rat Genome Database","null","chr4",100,100,{"$nulls":24},"NonCoding",4.38,4.04,4,4.9,5.36,5.59]
["TC1200000155.rn.1",7.3,6.59,1.636,"up",0.00183041282688266,0.00557457708173969,"KnowTID_00006016","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr12","+","MTA_TR0500013118.mm","Noncoding",9332227,9333223,30,null,"NA","MTA_TR0500013118.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr12",100,100,{"$nulls":24},"NonCoding",7.43,7.34,7.12,6.66,6.51,6.59]
["TC1000000085.rn.1",5.68,5.08,1.516,"up",0.0018350563180222,0.00558555516039314,null,null,"chr10","+",null,"Pseudogene",6656967,6657550,30,null,"NA","ENSRNOT00000044585","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:5458409:5458992:1 gene:ENSRNOG00000032663 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",5.78,5.72,5.53,4.97,5.24,5.02]
["TC1300002144.rn.1",7.19,6.59,1.516,"up",0.00183991677500525,0.00559799851890704,null,null,"chr13","-",null,"Pseudogene",103543979,103544761,30,null,"NA","ENSRNOT00000003260","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:108210335:108211117:-1 gene:ENSRNOG00000002402 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",7.27,7.2,7.09,6.64,6.65,6.48]
["TC0400001172.rn.1",6.48,4.43,4.141,"up",0.00184133297982125,0.00560046030778433,"LOC500206","similar to src homology 2 domain-containing transforming protein C1","chr4","+","ENSRNOT00000051286","Pseudogene",104311003,104312271,30,"4q33",500206,"ENSRNOT00000051286","ENSEMBL","ensembl:known chromosome:Rnor_5.0:4:169035587:169036831:1 gene:ENSRNOG00000029080 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,null,null,"ENSRNOT00000051286","Rn.233520","liver",{"$nulls":19},"Pseudogene",6.26,6.21,6.98,4.21,5.09,3.98]
["TC1100001825.rn.1",7.54,8.14,-1.516,"down",0.00184257828441924,0.00560157987025667,null,null,"chr11","-",null,"Pseudogene",75309810,75310807,30,null,"NA","ENSRNOT00000002652","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:11:78352562:78353559:-1 gene:ENSRNOG00000001932 gene_biotype:pseudogene transcript_biotype:pseudogene","chr11",100,100,{"$nulls":24},"Pseudogene",7.61,7.63,7.39,8.17,8.18,8.06]
["TC2000000626.rn.1",5.79,6.49,-1.625,"down",0.00185428780249298,0.00562759470715374,"LOC102548545","uncharacterized LOC102548545","chr20","+","mRNARGD7738482_1","Noncoding",27552287,27577895,80,null,"NA","mRNARGD7738482_1","Rat Genome Database","uncharacterized LOC102548545","chr20",100,100,{"$nulls":24},"NonCoding",5.78,5.75,5.84,6.35,6.5,6.63]
["TC0500002932.rn.1",4.86,6.11,-2.378,"down",0.00186867714159698,0.00565839728496323,"NONMMUG029542","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400009744.mm","Noncoding",85078477,85080048,30,null,"NA","MTA_TR0400009744.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",4.69,4.79,5.09,5.6,6.02,6.7]
["TC1600000757.rn.1",8.89,10.17,-2.428,"down",0.00187438294616977,0.00567087979492774,"LOC102546960","uncharacterized LOC102546960","chr16","+","mRNARGD7623895_1","Noncoding",66307330,66308075,30,null,"NA","mRNARGD7623895_1","Rat Genome Database","uncharacterized LOC102546960","chr16",100,100,{"$nulls":24},"NonCoding",8.6,9.27,8.81,9.61,10.22,10.67]
["TC1400000859.rn.1",10.85,11.78,-1.905,"down",0.00187631019027609,0.00567433570948572,"MGI:5011935","PREDICTED:  predicted gene, 19750 (Gm19750), miscRNA.","chr14","+","MTA_TR0500007859.mm","Noncoding",83053731,83062460,30,null,"NA","MTA_TR0500007859.mm","MTA2Rn6","PREDICTED:  predicted gene, 19750 (Gm19750), miscRNA.","chr14",100,100,{"$nulls":24},"NonCoding",10.98,10.59,10.98,11.76,11.81,11.77]
["TC1500000572.rn.1",5.95,4.13,3.531,"up",0.00188031249922099,0.0056814938987594,"LOC691806","similar to Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa subunit) (p41-ARC)","chr15","+","ENSRNOT00000074760","Pseudogene",38028614,38030123,30,"15p12",691806,"ENSRNOT00000074760","ENSEMBL","ensembl:known chromosome:Rnor_5.0:15:41869599:41871108:1 gene:ENSRNOG00000050940 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,null,null,"ENSRNOT00000074760","Rn.232666","brain| colon| dorsal root ganglion| eye| heart| kidney| liver| lung| ovary| pancreas| placenta| prostate| spleen| testis| thymus| fetus| juvenile| adult",{"$nulls":19},"Pseudogene",5.91,5.73,6.22,4.08,3.89,4.41]
["TC1600000344.rn.1",6.58,5.03,2.928,"up",0.00188863955388922,0.0056999290063084,"NCBI_Gene:100861638","PREDICTED:  uncharacterized LOC100861638, transcript variant 3 (LOC100861638), miscRNA.","chr16","+","MTA_TR0800007204.mm","Noncoding",22538560,22548417,50,null,"NA","MTA_TR0800007204.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861638, transcript variant 3 (LOC100861638), miscRNA.","chr16",100,100,{"$nulls":24},"NonCoding",6.92,6.12,6.7,5.11,5.02,4.97]
["TC0500001657.rn.1",5.54,6.15,-1.526,"down",0.00189351749488072,0.00570947620266846,"LOC102546373","uncharacterized LOC102546373","chr5","+","mRNARGD7574875_1","Noncoding",152655820,152659509,30,null,"NA","mRNARGD7574875_1","Rat Genome Database","uncharacterized LOC102546373","chr5",100,100,{"$nulls":24},"NonCoding",5.7,5.63,5.28,6.29,6.15,6.01]
["TC0200001194.rn.1",5.39,6.47,-2.114,"down",0.00189409257670647,0.00571021904720029,"LOC102548098","uncharacterized LOC102548098","chr2","+","mRNARGD7538497_1","Noncoding",147779097,147788998,30,null,"NA","mRNARGD7538497_1","Rat Genome Database","uncharacterized LOC102548098","chr2",100,100,{"$nulls":24},"NonCoding",5.54,5.15,5.49,6.63,6.45,6.33]
["TC1500002172.rn.1",9.99,7.92,4.199,"up",0.00190364861159249,0.00572511773406737,"LOC102554834","uncharacterized LOC102554834","chr15","-","mRNARGD7744127_1","Noncoding",67569116,67587625,70,null,"NA","mRNARGD7744127_1","Rat Genome Database","uncharacterized LOC102554834","chr15",100,100,{"$nulls":24},"NonCoding",9.84,10.28,9.85,8.05,8.08,7.64]
["TC1600001535.rn.1",8.57,7.5,2.099,"up",0.00190417259781144,0.00572570230164143,"KnowTID_00007428","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16","-","MTA_TR0900000728.mm","Noncoding",33943093,33943778,30,null,"NA","MTA_TR0900000728.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",8.53,8.37,8.81,7.51,7.67,7.31]
["TC0100007092.rn.1",4.89,5.73,-1.79,"down",0.00190632187113552,0.00573117293587662,"NONMMUG020627","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR1900003232.mm","Noncoding",220191213,220192042,30,null,"NA","MTA_TR1900003232.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.09,4.98,4.6,5.57,5.71,5.91]
["TC0800000090.rn.1",5.3,4.47,1.778,"up",0.00191596230272148,0.00575020407058998,"KnowTID_00007414","Non-coding transcript identified by Luo, et al.","chr8","+","MTA_TR0900000301.mm","Noncoding",12081438,12085129,30,null,"NA","MTA_TR0900000301.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",5.31,5.21,5.38,4.09,4.47,4.85]
["TC1000001676.rn.1",6.65,7.56,-1.879,"down",0.00192556393545966,0.00577403264679264,"ENSMUSG00000093467","predicted gene 20659, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr10","+","MTA_TR1100006410.mm","Noncoding",89904581,89905329,30,null,"NA","MTA_TR1100006410.mm","MTA2Rn6","predicted gene 20659, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr10",100,100,{"$nulls":24},"NonCoding",6.63,6.63,6.69,7.23,7.96,7.48]
["TC0400000090.rn.1",5.72,6.44,-1.647,"down",0.00192800667986127,0.00577895413296011,"MGI:5011501","PREDICTED:  predicted gene, 19316 (Gm19316), miscRNA.","chr4","+","MTA_TR1600005193.mm","Noncoding",6475474,6477151,30,null,"NA","MTA_TR1600005193.mm","MTA2Rn6","PREDICTED:  predicted gene, 19316 (Gm19316), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",5.9,5.76,5.5,6.14,6.67,6.51]
["TC1500001995.rn.1",6.81,8.85,-4.112,"down",0.00192825454466345,0.00577895413296011,"NONMMUG013334","Non-coding transcript identified by NONCODE: Antisense","chr15","-","MTA_TR1400007316.mm","Noncoding",52153527,52160251,30,null,"NA","MTA_TR1400007316.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr15",100,100,{"$nulls":24},"NonCoding",6.96,6.67,6.81,8.86,8.99,8.71]
["TC0X00002241.rn.1",9.75,10.17,-1.338,"down",0.00192853589941683,0.00577895413296011,"LOC363500","similar to UBX domain containing 4","chrX","-","LOC363500.aSep08-unspliced","Pseudogene",110177759,110178536,30,null,"NA","LOC363500.aSep08-unspliced","Ace View","similar to UBX domain containing 4","chrX",100,100,{"$nulls":24},"Pseudogene",9.74,9.74,9.76,9.99,10.34,10.19]
["TC1700000393.rn.1",3.65,4.54,-1.853,"down",0.00193068735927146,0.00578240864101802,"NONMMUG010814","Non-coding transcript identified by NONCODE: Antisense","chr17","+","MTA_TR1300001299.mm","Noncoding",23923491,23926160,30,null,"NA","MTA_TR1300001299.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr17",100,100,{"$nulls":24},"NonCoding",3.46,3.88,3.62,4.5,4.67,4.44]
["TC0400000564.rn.1",4.8,5.29,-1.404,"down",0.00193728858275749,0.00579318987279745,"NONMMUG034877","Non-coding transcript identified by NONCODE: Antisense","chr4","+","MTA_TR0600000930.mm","Noncoding",58093496,58095462,30,null,"NA","MTA_TR0600000930.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",4.66,4.93,4.82,5.31,5.37,5.19]
["TC1000001368.rn.1",3.88,3.24,1.558,"up",0.00194820064381764,0.00581580913967283,"Scpep1os","serine carboxypeptidase 1, opposite strand","chr10","+","NR_045955","Noncoding",76219728,76245247,30,"11|11",73921,"NR_045955","RefSeq","Mus musculus serine carboxypeptidase 1, opposite strand (Scpep1os), long non-coding RNA.","chr10",100,100,null,null,"NR_045955","Mm.439148","testis| adult",{"$nulls":19},"NonCoding",3.89,3.75,4,3.2,3.31,3.2]
["TC0400000420.rn.1",3.47,2.95,1.434,"up",0.0019523269041367,0.00582612448922155,"KnowTID_00006047","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0600000354.mm","Noncoding",43997168,44010592,30,null,"NA","MTA_TR0600000354.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",3.33,3.37,3.7,3.04,2.8,3.01]
["TC1400000541.rn.1",7.35,4.86,5.618,"up",0.00195328105930648,0.00582797067695171,"LOC102550952","uncharacterized LOC102550952","chr14","+","mRNARGD7521190_1","Noncoding",45051728,45053631,30,null,"NA","mRNARGD7521190_1","Rat Genome Database","uncharacterized LOC102550952","chr14",100,100,{"$nulls":24},"NonCoding",6.97,6.97,8.1,5.41,5.12,4.04]
["TC0X00000849.rn.1",4.67,3.64,2.042,"up",0.00195417153244459,0.00582962625624162,"NONMMUG045804","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00003403.mm","Noncoding",99963079,99963665,30,null,"NA","MTA_TR0X00003403.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",4.44,4.44,5.12,3.92,3.37,3.63]
["TC1500002344.rn.1",5.41,6.47,-2.085,"down",0.00196766501134996,0.00585884968969531,"lajer","Unannotated AceView Transcript","chr15","-","lajer.aSep08-unspliced","Noncoding",96553294,96603276,50,null,"NA","lajer.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr15",100,100,{"$nulls":24},"NonCoding",5.47,5.37,5.4,6.27,6.53,6.6]
["TC0100002898.rn.1",5.47,7.06,-3.01,"down",0.00196767768635556,0.00585884968969531,"NCBI_Gene:100862193","PREDICTED:  uncharacterized LOC100862193 (LOC100862193), miscRNA.","chr1","+","MTA_TR0700007351.mm","Noncoding",214407069,214408027,30,null,"NA","MTA_TR0700007351.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862193 (LOC100862193), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",5.72,5.71,4.99,7.18,7.26,6.73]
["TC0700002517.rn.1",5.22,4.38,1.79,"up",0.0019697369088748,0.00586196673703343,"LOC102554269","uncharacterized LOC102554269","chr7","-","mRNARGD7570687_1","Noncoding",35395727,35400964,50,null,"NA","mRNARGD7570687_1","Rat Genome Database","uncharacterized LOC102554269","chr7",100,100,{"$nulls":24},"NonCoding",4.98,5.31,5.36,4.47,4.34,4.34]
["TC0300003273.rn.1",14.95,13.3,3.138,"up",0.00197602259848563,0.0058746113089477,null,null,"chr3","-",null,"Noncoding",57683205,57683781,30,null,"NA","NONRATT037298","NONCODE","Non-coding transcript identified by NONCODE","chr3",100,100,{"$nulls":24},"NonCoding",14.76,15.47,14.61,12.91,13.16,13.83]
["TC0500003545.rn.1",14.12,13.41,1.636,"up",0.00197973259547815,0.00587825781664081,null,null,"chr5","-",null,"Pseudogene",140836161,140836642,30,null,"NA","ENSRNOT00000048224","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:144626641:144627122:-1 gene:ENSRNOG00000034099 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",14.12,14.11,14.13,13.56,13.61,13.06]
["TC0200001798.rn.1",5.84,6.51,-1.591,"down",0.00198967443851433,0.00590007420133705,"MGI:5012328","PREDICTED:  predicted gene, 20143 (Gm20143), miscRNA.","chr2","+","MTA_TR0300003310.mm","Noncoding",200022376,200043973,30,null,"NA","MTA_TR0300003310.mm","MTA2Rn6","PREDICTED:  predicted gene, 20143 (Gm20143), miscRNA.","chr2",100,100,{"$nulls":24},"NonCoding",5.79,5.83,5.89,6.45,6.78,6.29]
["TC0900000681.rn.1",5.36,6.67,-2.479,"down",0.00199417736998997,0.00590536227311566,"LOC688585","hypothetical protein LOC688585","chr9","+","LOC688585.aSep08","Noncoding",63638010,63758192,80,null,"NA","LOC688585.aSep08","Ace View","hypothetical protein LOC688585","chr9",100,100,{"$nulls":24},"NonCoding",5.5,5.5,5.07,6.31,7.05,6.66]
["TC1800000968.rn.1",4.68,5.61,-1.905,"down",0.00200475061227025,0.00592858748480533,"KnowTID_00003902","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr18","+","MTA_TR1800002678.mm","Noncoding",83588275,83595976,30,null,"NA","MTA_TR1800002678.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",4.73,4.85,4.46,5.48,5.4,5.94]
["TC0200000716.rn.1",3.74,4.15,-1.329,"down",0.00200786614441751,0.00593577991740581,"KnowTID_00002694","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1500000566.mm","Noncoding",84437873,84439758,30,null,"NA","MTA_TR1500000566.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",3.77,3.7,3.76,4.3,4.11,4.05]
["TC1000000440.rn.1",10.48,9.46,2.028,"up",0.00201274207881252,0.00594816989640223,"KnowTID_00001139","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1100001434.mm","Noncoding",30464422,30467937,30,null,"NA","MTA_TR1100001434.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",10.2,10.88,10.36,9.56,9.26,9.55]
["TC0200004488.rn.1",13.31,12.73,1.495,"up",0.00201420188300452,0.00595147149339539,"ENSMUSG00000081136","predicted gene 12990, ribosomal protein L21 (Rpl21) pseudogene","chr2","-","MTA_TR0400012992.mm","Pseudogene",211868756,211869238,30,null,"NA","MTA_TR0400012992.mm","MTA2Rn6","predicted gene 12990, ribosomal protein L21 (Rpl21) pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",13.35,13.39,13.2,12.75,12.92,12.53]
["TC0800002766.rn.1",4.58,3.77,1.753,"up",0.00202014718177647,0.00596599399772851,"LOC102548661","uncharacterized LOC102548661","chr8","-","mRNARGD7531989_1","Noncoding",70282178,70291514,60,null,"NA","mRNARGD7531989_1","Rat Genome Database","uncharacterized LOC102548661","chr8",100,100,{"$nulls":24},"NonCoding",4.49,4.66,4.6,3.8,3.72,3.8]
["TC1600001325.rn.1",4.23,3.85,1.301,"up",0.00203148908256082,0.00599235810038445,"NONMMUG040941","Non-coding transcript identified by NONCODE: Linc","chr16","-","MTA_TR0800002623.mm","Noncoding",18816562,18816878,30,null,"NA","MTA_TR0800002623.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",4.21,4.37,4.1,3.86,3.77,3.93]
["TC1000001348.rn.1",6.52,7.57,-2.071,"down",0.00203217650671449,0.00599336809815576,"NONMMUG007196","Non-coding transcript identified by NONCODE: Antisense","chr10","+","MTA_TR1100005135.mm","Noncoding",75262538,75264513,30,null,"NA","MTA_TR1100005135.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",6.58,6.44,6.53,7.58,7.72,7.41]
["TC0700002380.rn.1",6.9,8.75,-3.605,"down",0.00203649120057692,0.0060030355752964,"uc029ran.1","non-coding RNA, oocyte_clustered_small_RNA1749, complete sequence.","chr7","-","MTA_TR1000003186.mm","Noncoding",26455326,26455392,30,null,"NA","MTA_TR1000003186.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA1749, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",6.68,6.29,7.74,8.51,9.11,8.62]
["TC0100004412.rn.1",5.72,6.48,-1.693,"down",0.00204479024729105,0.00602291670438896,"flofly","Unannotated AceView Transcript","chr1","-","flofly.aSep08","Noncoding",46366934,46377827,80,null,"NA","flofly.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"NonCoding",5.92,5.41,5.82,6.48,6.4,6.55]
["TC0300003772.rn.1",8.79,9.82,-2.042,"down",0.00204633484373953,0.00602489535094905,null,null,"chr3","-",null,"Noncoding",93699779,93701236,30,null,"NA","NONRATT037737","NONCODE","Non-coding transcript identified by NONCODE","chr3",100,100,{"$nulls":24},"NonCoding",8.52,8.82,9.03,9.73,10.04,9.68]
["TC0100003733.rn.1",4.21,5.04,-1.778,"down",0.00204993181430631,0.00603446289549482,"NONMMUG021508","Non-coding transcript identified by NONCODE: Antisense","chr1","+","MTA_TR1900002423.mm","Noncoding",266061687,266062962,30,null,"NA","MTA_TR1900002423.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",4.3,4.05,4.29,5.16,5.32,4.65]
["TC0400002113.rn.1",4.02,4.47,-1.366,"down",0.00205058920222214,0.0060353753018978,"LOC102549835","uncharacterized LOC102549835","chr4","-","mRNARGD7685092_1","Noncoding",1079403,1119177,50,null,"NA","mRNARGD7685092_1","Rat Genome Database","uncharacterized LOC102549835","chr4",100,100,{"$nulls":24},"NonCoding",4.06,3.99,4.02,4.38,4.48,4.56]
["TC1100001613.rn.1",7.18,5.86,2.497,"up",0.00205827858670871,0.00604980665477445,"NONMMUG016543","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","-","MTA_TR1600002381.mm","Noncoding",62167054,62169908,30,null,"NA","MTA_TR1600002381.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",7.11,7.2,7.24,5.48,5.7,6.4]
["TC0200003383.rn.1",5.6,6.14,-1.454,"down",0.00206027868330252,0.00605466097236476,"NCBI_Gene:100861946","PREDICTED:  uncharacterized LOC100861946 (LOC100861946), miscRNA.","chr2","-","MTA_TR0300005719.mm","Noncoding",112931577,112934955,30,null,"NA","MTA_TR0300005719.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861946 (LOC100861946), miscRNA.","chr2",100,100,{"$nulls":24},"NonCoding",5.62,5.59,5.59,6.02,6.38,6.01]
["TC0100000536.rn.1",8.69,7.12,2.969,"up",0.00206705856049196,0.00607047747325542,"NONMMUG017454","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR1700005056.mm","Noncoding",50844589,50847256,30,null,"NA","MTA_TR1700005056.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",8.14,8.81,9.12,7.13,7.02,7.2]
["TC1200000156.rn.1",6.87,6.1,1.705,"up",0.00207415178862874,0.0060845561438644,"KnowTID_00006015","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr12","+","MTA_TR0500013117.mm","Noncoding",9333324,9334104,30,null,"NA","MTA_TR0500013117.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr12",100,100,{"$nulls":24},"NonCoding",6.8,6.82,6.99,6.06,5.78,6.47]
["TC0600003203.rn.1",6.33,7.17,-1.79,"down",0.00207480412396539,0.00608499450234725,null,null,"chr6","-",null,"Noncoding",135406672,135407582,30,null,"NA","NONRATT047488","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",6.38,6.04,6.57,7.46,7.24,6.82]
["TC0500000808.rn.1",6.78,8.14,-2.567,"down",0.00207640027860493,0.0060860597382734,"NONMMUG029549","Non-coding transcript identified by NONCODE: Antisense","chr5","+","MTA_TR0400002260.mm","Noncoding",86586123,86589538,30,null,"NA","MTA_TR0400002260.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",6.86,6.79,6.69,7.89,8.49,8.05]
["TC0800001579.rn.1",7.43,8.97,-2.908,"down",0.00207810560004315,0.00608953650107111,"NONMMUG043997","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","+","MTA_TR0900004708.mm","Noncoding",118091855,118092711,30,null,"NA","MTA_TR0900004708.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",7.07,7.6,7.63,8.96,8.92,9.02]
["TC1800000348.rn.1",8.14,6.49,3.138,"up",0.00207845753337474,0.00608954053166683,null,null,"chr18","+",null,"Pseudogene",30769016,30769428,30,null,"NA","ENSRNOT00000017963","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:30464847:30465259:1 gene:ENSRNOG00000013427 gene_biotype:pseudogene transcript_biotype:pseudogene","chr18",100,100,{"$nulls":24},"Pseudogene",8.29,8.01,8.13,6.74,7.02,5.7]
["TC1000001117.rn.1",7.04,6.25,1.729,"up",0.00207927008417049,0.00609089386713753,"LOC363643","similar to 60S ribosomal protein L7a","chr10","+","LOC363643.aSep08-unspliced","Pseudogene",63875333,63876128,30,null,"NA","LOC363643.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7a","chr10",100,100,{"$nulls":24},"Pseudogene",7.07,7.16,6.89,5.95,6.27,6.54]
["TC1000001418.rn.1",3.08,4.53,-2.732,"down",0.00208097463398882,0.00609280471380748,"NONMMUG007293","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","+","MTA_TR1100005315.mm","Noncoding",81088693,81092440,30,null,"NA","MTA_TR1100005315.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",3.03,3.08,3.13,4.04,4.21,5.33]
["TC0400000590.rn.1",12.08,12.89,-1.753,"down",0.00208796840811756,0.0061039950965673,"LOC366309","similar to suppressor of initiator codon mutations, related sequence 1","chr4","+","LOC366309.aSep08-unspliced","Pseudogene",59203201,59203730,29,null,"NA","LOC366309.aSep08-unspliced","Ace View","similar to suppressor of initiator codon mutations, related sequence 1","chr4",100,100,{"$nulls":24},"Pseudogene",12.04,12.23,11.98,13.04,13.15,12.49]
["TC0600001700.rn.1",6.5,5.17,2.514,"up",0.00210231181295918,0.00612744322872223,"NONMMUG010144","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200003843.mm","Noncoding",145620016,145621125,30,null,"NA","MTA_TR1200003843.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",6.17,6.29,7.03,5.17,4.96,5.38]
["TC0300002218.rn.1",5.67,6.64,-1.959,"down",0.00210348492265942,0.00612875487948956,"NONMMUG025365","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200008425.mm","Noncoding",156762700,156763730,30,null,"NA","MTA_TR0200008425.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.37,5.66,5.98,6.33,6.73,6.86]
["TC0200001971.rn.1",3.94,3.66,1.214,"up",0.00211199434137234,0.00614530212796967,"LOC102550075","uncharacterized LOC102550075","chr2","+","mRNARGD7596327_1","Noncoding",210607292,210624459,30,null,"NA","mRNARGD7596327_1","Rat Genome Database","uncharacterized LOC102550075","chr2",100,100,{"$nulls":24},"NonCoding",3.88,4.04,3.91,3.6,3.66,3.71]
["TC1600000474.rn.1",3.57,3.23,1.266,"up",0.00211513577571362,0.00614948995710008,"KnowTID_00007272","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16","+","MTA_TR0800006933.mm","Noncoding",37246527,37287212,37,null,"NA","MTA_TR0800006933.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",3.54,3.69,3.48,3.13,3.3,3.25]
["TC0300002941.rn.1",5.62,6.32,-1.625,"down",0.00212194977627054,0.0061602198296975,"LOC102556489","uncharacterized LOC102556489","chr3","-","mRNARGD7544329_1","Noncoding",14880547,14889241,30,null,"NA","mRNARGD7544329_1","Rat Genome Database","uncharacterized LOC102556489","chr3",100,100,{"$nulls":24},"NonCoding",5.4,5.73,5.73,6.42,6.52,6.01]
["TC0100003118.rn.1",4.87,5.61,-1.67,"down",0.00212961446991084,0.00617650769499756,"NONMMUG020724","Non-coding transcript identified by NONCODE: Antisense","chr1","+","MTA_TR1900000655.mm","Noncoding",222179187,222180026,30,null,"NA","MTA_TR1900000655.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",4.88,4.71,5.03,5.82,5.37,5.65]
["TC0100001155.rn.1",6.19,7.64,-2.732,"down",0.00213211644931065,0.00618004252310617,"KnowTID_00006512","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR0700001678.mm","Noncoding",85129362,85130678,30,null,"NA","MTA_TR0700001678.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.68,6.28,6.6,7.92,7.78,7.21]
["TC0X00000781.rn.1",3.97,4.61,-1.558,"down",0.0021374911651227,0.00618831311773,"NONMMUG045690","Non-coding transcript identified by NONCODE: Linc","chrX","+","MTA_TR0X00003194.mm","Noncoding",84096257,84097929,30,null,"NA","MTA_TR0X00003194.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",3.84,4.13,3.94,4.41,4.78,4.65]
["TC1600001545.rn.1",5.42,4.22,2.297,"up",0.00213817600210785,0.00618831311773,"LOC102548619","uncharacterized LOC102548619","chr16","-","mRNARGD7627297_1","Noncoding",35920206,35925978,60,null,"NA","mRNARGD7627297_1","Rat Genome Database","uncharacterized LOC102548619","chr16",100,100,{"$nulls":24},"NonCoding",4.84,5.56,5.87,3.89,4.28,4.5]
["TC0500001449.rn.1",3.3,3.66,-1.283,"down",0.00213926487820941,0.00618901666171632,"LOC102546490","uncharacterized LOC102546490","chr5","+","mRNARGD7537778_1","Noncoding",143422656,143430660,30,null,"NA","mRNARGD7537778_1","Rat Genome Database","uncharacterized LOC102546490","chr5",100,100,{"$nulls":24},"NonCoding",3.42,3.17,3.31,3.75,3.62,3.6]
["TC1200001857.rn.1",7.73,6.64,2.129,"up",0.00216344654972363,0.00622170092465362,null,null,"chr12","-",null,"Pseudogene",51986812,51987604,30,null,"NA","ENSRNOT00000037000","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:53725163:53725955:-1 gene:ENSRNOG00000024864 gene_biotype:pseudogene transcript_biotype:pseudogene","chr12",100,100,{"$nulls":24},"Pseudogene",7.73,7.92,7.54,6.58,6.78,6.55]
["TC1500000757.rn.1",5.42,6.66,-2.362,"down",0.00216508220941473,0.00622470093673341,"NONMMUG013301","Non-coding transcript identified by NONCODE: Linc","chr15","+","MTA_TR1400003257.mm","Noncoding",51251697,51256458,30,null,"NA","MTA_TR1400003257.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",5.34,5.36,5.56,6.46,6.8,6.73]
["TC0600001062.rn.1",8.03,6.26,3.411,"up",0.00217067930740858,0.00623563258624019,"ENSMUSG00000097417","predicted gene, 26669, Non-coding transcript identified by NONCODE: Antisense","chr6","+","MTA_TR1200002008.mm","Noncoding",103308070,103313086,30,null,"NA","MTA_TR1200002008.mm","MTA2Rn6","predicted gene, 26669, Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",7.78,7.92,8.39,6.4,6.51,5.88]
["TC1500002080.rn.1",3.4,3.68,-1.214,"down",0.00217110988444127,0.00623583826101675,"LOC102549099","uncharacterized LOC102549099","chr15","-","mRNARGD7695027_1","Noncoding",57911189,57912952,30,null,"NA","mRNARGD7695027_1","Rat Genome Database","uncharacterized LOC102549099","chr15",100,100,{"$nulls":24},"NonCoding",3.32,3.49,3.39,3.69,3.63,3.73]
["TC0400000206.rn.1",6.1,7.52,-2.676,"down",0.00217416302723577,0.0062405497299741,"ENSMUSG00000097976","predicted gene, 26918, Non-coding transcript identified by NONCODE: Antisense, novel transcript, antisense to Pclo","chr4","+","MTA_TR0500007057.mm","Noncoding",17033129,17053654,30,null,"NA","MTA_TR0500007057.mm","MTA2Rn6","predicted gene, 26918, Non-coding transcript identified by NONCODE: Antisense, novel transcript, antisense to Pclo","chr4",100,100,{"$nulls":24},"NonCoding",6.19,5.89,6.22,7.31,7.81,7.44]
["TC0700000624.rn.1",3.91,4.79,-1.84,"down",0.00217986017129198,0.0062516676631192,"KnowTID_00000800","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","+","MTA_TR1000003913.mm","Noncoding",44044325,44046199,30,null,"NA","MTA_TR1000003913.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",3.7,3.85,4.18,4.63,4.78,4.95]
["TC1800000089.rn.1",4.37,5.14,-1.705,"down",0.00218932273856174,0.0062653583676369,"NONMMUG019419","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr18","+","MTA_TR1800000355.mm","Noncoding",8361477,8364440,30,null,"NA","MTA_TR1800000355.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr18",100,100,{"$nulls":24},"NonCoding",4.02,4.4,4.68,5.16,4.99,5.26]
["TC1400000699.rn.1",5.67,4.8,1.828,"up",0.00220239419032405,0.00628000483915283,"NONMMUG032380","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500008414.mm","Noncoding",69822650,69825644,30,null,"NA","MTA_TR0500008414.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",5.5,5.67,5.85,4.47,4.86,5.07]
["TC1400000110.rn.1",4.44,5.02,-1.495,"down",0.00220306152142991,0.00628087669272263,"loyjey","Unannotated AceView Transcript","chr14","+","loyjey.aSep08","Noncoding",6780724,6796747,100,null,"NA","loyjey.aSep08","Ace View","Unannotated AceView Transcript","chr14",100,100,{"$nulls":24},"NonCoding",4.54,4.34,4.43,5.16,4.99,4.91]
["TC1000003585.rn.1",7.1,7.71,-1.526,"down",0.00220682312934331,0.00628653738381205,"NONMMUG007323","Non-coding transcript identified by NONCODE: Antisense","chr10","-","MTA_TR1100013237.mm","Noncoding",82038722,82039192,30,null,"NA","MTA_TR1100013237.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",7.24,7,7.05,7.65,7.9,7.57]
["TC1500000146.rn.1",5.05,5.57,-1.434,"down",0.00222064098079606,0.00631761315178084,"LOC102552767","uncharacterized LOC102552767","chr15","+","mRNARGD7658033_1","Noncoding",14885918,14921873,70,null,"NA","mRNARGD7658033_1","Rat Genome Database","uncharacterized LOC102552767","chr15",100,100,{"$nulls":24},"NonCoding",4.98,5.09,5.09,5.61,5.53,5.58]
["TC0700003111.rn.1",7.99,6.88,2.158,"up",0.00223024095357317,0.00633341762375667,"NONMMUG014497","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004487.mm","Noncoding",90227376,90229441,30,null,"NA","MTA_TR1500004487.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",7.73,7.97,8.27,6.82,6.68,7.14]
["TC0200003613.rn.1",6.68,8.7,-4.056,"down",0.0022349533979659,0.00634235969847036,"mawshee","Unannotated AceView Transcript","chr2","-","mawshee.aSep08","Noncoding",136879930,136992207,110,null,"NA","mawshee.aSep08","Ace View","Unannotated AceView Transcript","chr2",100,100,{"$nulls":24},"NonCoding",6.8,6.69,6.55,9.12,9.01,7.98]
["TC1000001514.rn.1",3.38,2.93,1.366,"up",0.00223570569440875,0.00634235969847036,"bymer","Unannotated AceView Transcript","chr10","+","bymer.aSep08","Noncoding",84422329,84422907,30,null,"NA","bymer.aSep08","Ace View","Unannotated AceView Transcript","chr10",100,100,{"$nulls":24},"NonCoding",3.44,3.35,3.35,3.1,2.77,2.91]
["TC0100004800.rn.1",5.57,6.33,-1.693,"down",0.00223585196551734,0.00634235969847036,"NONMMUG037130","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR0700000194.mm","Noncoding",72862015,72865128,30,null,"NA","MTA_TR0700000194.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",5.61,5.5,5.61,6.72,6.05,6.22]
["TC0100003514.rn.1",5.18,4.26,1.892,"up",0.00223667987856943,0.00634340672173544,"ENSMUSG00000097558","predicted gene, 26902, Non-coding transcript identified by NONCODE: Antisense","chr1","+","MTA_TR1900001789.mm","Noncoding",252808057,252814565,41,null,"NA","MTA_TR1900001789.mm","MTA2Rn6","predicted gene, 26902, Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",4.92,4.92,5.69,4.39,4.14,4.24]
["TC1700001572.rn.1",10.63,9.44,2.282,"up",0.00223842185815634,0.00634517967057336,"LOC100362583","ribosomal protein L13a-like","chr17","-","mRNARGD6580916_1","Pseudogene",24610087,24611117,22,null,"NA","mRNARGD6580916_1","Rat Genome Database","ribosomal protein L13a-like","chr17",100,100,{"$nulls":24},"Pseudogene",10.54,10.32,11.04,9.67,9.63,9.03]
["TC1000003570.rn.1",7.07,7.57,-1.414,"down",0.00223876611599471,0.00634517967057336,null,null,"chr10","-",null,"Pseudogene",81366054,81366370,30,null,"NA","ENSRNOT00000035499","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:81201080:81201396:-1 gene:ENSRNOG00000027689 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",7.21,6.99,7.01,7.44,7.79,7.47]
["TC0300000271.rn.1",7.94,9.21,-2.412,"down",0.00226409844607155,0.00639714608111726,"LOC102549222","uncharacterized LOC102549222","chr3","+","mRNARGD7608279_1","Noncoding",11842971,11844925,30,null,"NA","mRNARGD7608279_1","Rat Genome Database","uncharacterized LOC102549222","chr3",100,100,{"$nulls":24},"NonCoding",7.81,7.78,8.24,9.46,9.23,8.93]
["TC0200003909.rn.1",6.13,4.93,2.297,"up",0.00226791792790055,0.00640273075338216,"NONMMUG026914","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300007027.mm","Noncoding",178238856,178239848,30,null,"NA","MTA_TR0300007027.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.11,6.02,6.26,4.69,4.79,5.3]
["TC0700000224.rn.1",4.95,4.34,1.526,"up",0.00226844149059842,0.00640316820493746,"ENSMUSG00000090860","predicted gene 17134, Non-coding transcript identified by NONCODE: Antisense,Sense No Exonic, putative novel transcript","chr7","+","MTA_TR1000007790.mm","Noncoding",12663966,12664459,38,null,"NA","MTA_TR1000007790.mm","MTA2Rn6","predicted gene 17134, Non-coding transcript identified by NONCODE: Antisense,Sense No Exonic, putative novel transcript","chr7",100,100,{"$nulls":24},"NonCoding",5.16,5,4.69,4.21,4.38,4.42]
["TC1400001134.rn.1",3.95,4.52,-1.485,"down",0.00226986593844177,0.00640614804495077,"NONMMUG005513","Non-coding transcript identified by NONCODE: Antisense","chr14","+","MTA_TR1100000775.mm","Noncoding",107754810,107758552,30,null,"NA","MTA_TR1100000775.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr14",100,100,{"$nulls":24},"NonCoding",4.17,3.77,3.91,4.5,4.35,4.72]
["TC2000000585.rn.1",4.99,4.23,1.693,"up",0.00227051373612365,0.0064069353655302,"LOC102551701","uncharacterized LOC102551701","chr20","+","mRNARGD7707484_1","Noncoding",23073502,23087869,90,null,"NA","mRNARGD7707484_1","Rat Genome Database","uncharacterized LOC102551701","chr20",100,100,{"$nulls":24},"NonCoding",4.81,5.32,4.85,4.18,4.08,4.44]
["TC0100001471.rn.1",4.05,4.37,-1.248,"down",0.00227518301257102,0.0064149008458645,"NONMMUG037941","Non-coding transcript identified by NONCODE: Antisense,  10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:6530437J22 product:unclassifiable, full insert sequence.","chr1","+","MTA_TR0700002924.mm","Noncoding",100964438,100969092,40,null,"NA","MTA_TR0700002924.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense,  10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:6530437J22 product:unclassifiable, full insert sequence.","chr1",100,100,{"$nulls":24},"NonCoding",4.1,3.96,4.09,4.34,4.47,4.3]
["TC0400003703.rn.1",7.54,8.36,-1.765,"down",0.00228060537851424,0.00642350306784934,"NCBI_Gene:100862403","PREDICTED:  uncharacterized LOC100862403, transcript variant 1 (LOC100862403), miscRNA.","chr4","-","MTA_TR0600010123.mm","Noncoding",155724282,155724802,30,null,"NA","MTA_TR0600010123.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862403, transcript variant 1 (LOC100862403), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",7.34,7.66,7.63,8.23,8.36,8.49]
["TC0100006076.rn.1",7.67,5.7,3.918,"up",0.00228082245826347,0.00642350306784934,"LOC102555737","uncharacterized LOC102555737","chr1","-","mRNARGD7514638_1","Noncoding",161990840,161993276,32,null,"NA","mRNARGD7514638_1","Rat Genome Database","uncharacterized LOC102555737","chr1",100,100,{"$nulls":24},"NonCoding",7.9,7.89,7.22,5.75,5.44,5.91]
["TC0200002150.rn.1",5.19,3.84,2.549,"up",0.00228856460610344,0.0064389975257451,"NONMMUG027864","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300004331.mm","Noncoding",231006857,231008358,30,null,"NA","MTA_TR0300004331.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.21,5.23,5.12,3.58,3.93,4.01]
["TC0300004447.rn.1",5.9,6.54,-1.558,"down",0.00228891887176766,0.0064389975257451,"LOC102548575","uncharacterized LOC102548575","chr3","-","mRNARGD7689511_1","Noncoding",147040553,147043174,30,null,"NA","mRNARGD7689511_1","Rat Genome Database","uncharacterized LOC102548575","chr3",100,100,{"$nulls":24},"NonCoding",6.09,5.59,6.01,6.63,6.52,6.47]
["TC0800002167.rn.1",5.29,4.57,1.647,"up",0.00229154990325655,0.00644253715352114,"NONMMUG042374","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","-","MTA_TR0900006351.mm","Noncoding",31794344,31862284,70,null,"NA","MTA_TR0900006351.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",5.16,5.16,5.55,4.48,4.73,4.51]
["TC0800000088.rn.1",6.52,5.06,2.751,"up",0.00230368636622446,0.00646642247933006,"LOC102556414","uncharacterized LOC102556414","chr8","+","mRNARGD7671166_1","Noncoding",12043057,12045080,30,null,"NA","mRNARGD7671166_1","Rat Genome Database","uncharacterized LOC102556414","chr8",100,100,{"$nulls":24},"NonCoding",6.32,6.18,7.06,5.53,4.57,5.09]
["TC0300003887.rn.1",3.2,3.57,-1.292,"down",0.00230473465292194,0.00646777797349063,"NONMMUG024161","Non-coding transcript identified by NONCODE: Antisense","chr3","-","MTA_TR0200015247.mm","Noncoding",103840258,103844080,30,null,"NA","MTA_TR0200015247.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",3.31,3.15,3.15,3.67,3.62,3.42]
["TC1400000062.rn.1",5.23,5.91,-1.602,"down",0.00232396144171095,0.00650282445295762,"LOC102548799","uncharacterized LOC102548799","chr14","+","mRNARGD7741633_1","Noncoding",3390133,3396642,50,null,"NA","mRNARGD7741633_1","Rat Genome Database","uncharacterized LOC102548799","chr14",100,100,{"$nulls":24},"NonCoding",5.25,5.35,5.1,5.86,5.72,6.16]
["TC2000000452.rn.1",5.73,6.31,-1.495,"down",0.00232559221251375,0.0065063395592811,"flabor","Unannotated AceView Transcript","chr20","+","flabor.aSep08","Noncoding",13738344,13746366,90,null,"NA","flabor.aSep08","Ace View","Unannotated AceView Transcript","chr20",100,100,{"$nulls":24},"NonCoding",5.72,5.77,5.71,6.23,6.61,6.1]
["TC0100007870.rn.1",8.84,9.15,-1.24,"down",0.00233198715805048,0.0065164406741464,"RGD1561154","INTERACTS WITH ammonium chloride","chr1","-","mRNARGD6600610_1","Pseudogene",269557690,269559633,30,null,"NA","mRNARGD6600610_1","Rat Genome Database","INTERACTS WITH ammonium chloride","chr1",100,100,{"$nulls":24},"Pseudogene",8.75,8.92,8.84,9.19,9.16,9.09]
["TC0400001418.rn.1",10.3,10.73,-1.347,"down",0.00233580019648767,0.00652439061154322,"ENSMUSG00000098130","predicted gene, 17797, Glyceraldehyde-3-phosphate dehydrogenase (Gapdh) pseudogene","chr4","+","MTA_TR0600003755.mm","Pseudogene",123573184,123574206,30,null,"NA","MTA_TR0600003755.mm","MTA2Rn6","predicted gene, 17797, Glyceraldehyde-3-phosphate dehydrogenase (Gapdh) pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",10.33,10.39,10.18,10.81,10.66,10.71]
["TC0X00001946.rn.1",8.72,10.71,-3.972,"down",0.00234090391521238,0.00653444350171208,"NONMMUG045483","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00007515.mm","Noncoding",71108022,71111155,30,null,"NA","MTA_TR0X00007515.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",8.68,8.58,8.89,10.75,10.75,10.62]
["TC0700003250.rn.1",16.33,15.97,1.283,"up",0.00234134411212259,0.00653462219982029,"LOC100910471","uncharacterized LOC100910471","chr7","-","mRNARGD6498293_1","Noncoding",104866092,104876450,30,null,"NA","mRNARGD6498293_1","Rat Genome Database","uncharacterized LOC100910471","chr7",100,100,{"$nulls":24},"NonCoding",16.33,16.45,16.21,15.95,16.02,15.95]
["TC0700003060.rn.1",15.13,14.55,1.495,"up",0.00234514484058286,0.00654207660603258,null,null,"chr7","-",null,"Pseudogene",80457440,80457816,30,null,"NA","ENSRNOT00000039430","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:80481851:80482227:-1 gene:ENSRNOG00000028486 gene_biotype:pseudogene transcript_biotype:pseudogene","chr7",100,100,{"$nulls":24},"Pseudogene",15.25,15.02,15.13,14.49,14.76,14.39]
["TC0700002369.rn.1",5.96,7.68,-3.294,"down",0.00234823479882615,0.00654964461952618,"uc029raw.1","non-coding RNA, oocyte_clustered_small_RNA1938, complete sequence.","chr7","-","MTA_TR1000003199.mm","Noncoding",26452749,26452789,17,null,"NA","MTA_TR1000003199.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA1938, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",6.16,5.58,6.13,8.22,7.3,7.53]
["TC1700001623.rn.1",3.59,3.03,1.474,"up",0.00235178444055333,0.00655428325314486,"NONMMUG010703","Non-coding transcript identified by NONCODE: Linc","chr17","-","MTA_TR1300001079.mm","Noncoding",28840332,28841187,30,null,"NA","MTA_TR1300001079.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",3.71,3.6,3.46,2.94,3.16,3]
["TC0800001847.rn.1",12.31,13.23,-1.892,"down",0.00235336590930634,0.00655763862857883,"KnowTID_00007220","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0800006445.mm","Noncoding",132857399,132857822,30,null,"NA","MTA_TR0800006445.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",12.15,12.61,12.17,13.16,13.45,13.07]
["TC0300001378.rn.1",6.49,4.93,2.949,"up",0.00235807136821632,0.0065633805058942,"NONMMUG024135","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr3","+","MTA_TR0200005227.mm","Noncoding",101591093,101595100,31,null,"NA","MTA_TR0200005227.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr3",100,100,{"$nulls":24},"NonCoding",6.4,6.72,6.34,4.98,4.78,5.04]
["TC1100000052.rn.1",3.81,4.91,-2.144,"down",0.00236398358744394,0.00657276485583527,"KnowTID_00003180","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600002915.mm","Noncoding",9423565,9424976,30,null,"NA","MTA_TR1600002915.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",3.63,3.89,3.91,4.43,4.85,5.45]
["TC0400003499.rn.1",11,11.57,-1.485,"down",0.00236409157902589,0.00657276485583527,"NCBI_Gene:100862120","PREDICTED:  uncharacterized LOC100862120 (LOC100862120), miscRNA.","chr4","-","MTA_TR0600009420.mm","Noncoding",140880120,140881876,30,null,"NA","MTA_TR0600009420.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862120 (LOC100862120), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",11.11,10.84,11.05,11.48,11.73,11.51]
["TC0300003131.rn.1",3.95,3.66,1.223,"up",0.00236730571595571,0.00657822684363106,null,null,"chr3","-",null,"Pseudogene",40148634,40149334,30,null,"NA","ENSRNOT00000006859","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:45240567:45241267:-1 gene:ENSRNOG00000005116 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",3.99,3.88,3.97,3.64,3.64,3.69]
["TC0200001958.rn.1",7.86,7.25,1.526,"up",0.00236757090705091,0.00657822684363106,null,null,"chr2","+",null,"Pseudogene",209979605,209980060,30,null,"NA","ENSRNOT00000037627","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:229448900:229449355:1 gene:ENSRNOG00000022535 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",7.84,7.84,7.89,7.1,7.41,7.24]
["TC0900000012.rn.1",6.74,5.45,2.445,"up",0.00237338600768877,0.00658714131449067,"NONMMUG018531","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","+","MTA_TR1700008423.mm","Noncoding",1241456,1244063,30,null,"NA","MTA_TR1700008423.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",6.58,6.68,6.97,4.99,5.41,5.94]
["TC0200000199.rn.1",8.55,6.96,3.01,"up",0.00237359618098183,0.00658714131449067,"LOC679528","similar to peroxiredoxin 1","chr2","+","mRNARGD6749434_1","Pseudogene",25055199,25055936,30,null,"NA","mRNARGD6749434_1","Rat Genome Database","similar to peroxiredoxin 1","chr2",100,100,{"$nulls":24},"Pseudogene",8.94,8.29,8.43,6.89,7.21,6.78]
["TC0600000205.rn.1",10.42,9.34,2.114,"up",0.00240622141717096,0.00664543026960444,"LOC102556503","uncharacterized LOC102556503","chr6","+","mRNARGD7702251_1","Noncoding",19166454,19172547,26,null,"NA","mRNARGD7702251_1","Rat Genome Database","uncharacterized LOC102556503","chr6",100,100,{"$nulls":24},"NonCoding",10.34,10.61,10.31,9.06,9.35,9.61]
["TC0X00001264.rn.1",14.48,13.67,1.753,"up",0.00240657688744281,0.00664543026960444,"NONMMUG020754","Non-coding transcript identified by NONCODE: Antisense","chrX","+","MTA_TR1900000733.mm","Noncoding",153490965,153491597,36,null,"NA","MTA_TR1900000733.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chrX",100,100,{"$nulls":24},"NonCoding",14.42,14.32,14.7,13.7,13.84,13.47]
["TC0600001280.rn.1",3.93,4.61,-1.602,"down",0.00241241596481866,0.00665809941608912,"NONMMUG009662","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200002651.mm","Noncoding",113950218,113952279,30,null,"NA","MTA_TR1200002651.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",3.84,3.9,4.06,4.5,4.51,4.81]
["TC0600000005.rn.1",13.17,11.91,2.395,"up",0.00241844898775231,0.00666602404228693,null,null,"chr6","+",null,"Noncoding",727102,728703,30,null,"NA","NONRATT046180","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",13.14,13.65,12.72,11.67,11.81,12.26]
["TC0900000090.rn.1",6.46,7.65,-2.282,"down",0.00242410276000596,0.00667550555549517,"KnowTID_00003702","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr9","+","MTA_TR1700008665.mm","Noncoding",10054786,10055979,30,null,"NA","MTA_TR1700008665.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",6.59,6.27,6.52,7.48,7.83,7.64]
["TC0600002222.rn.1",5.96,6.53,-1.485,"down",0.00242571587914998,0.00667608621395835,"NONMMUG008667","Non-coding transcript identified by NONCODE: Antisense","chr6","-","MTA_TR1200004339.mm","Noncoding",44319275,44326618,50,null,"NA","MTA_TR1200004339.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",6.03,5.87,5.99,6.32,6.62,6.65]
["TC0100005474.rn.1",4.7,5.16,-1.376,"down",0.00242738820605382,0.00667608621395835,"NONMMUG038069","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR0700011250.mm","Noncoding",104938234,104941514,50,null,"NA","MTA_TR0700011250.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",4.62,4.81,4.68,5.33,5.15,5]
["TC0800000650.rn.1",6.02,6.51,-1.404,"down",0.00243255847336698,0.00668612309325612,"fupor","Unannotated AceView Transcript","chr8","+","fupor.aSep08","Noncoding",52516118,52600654,30,null,"NA","fupor.aSep08","Ace View","Unannotated AceView Transcript","chr8",100,100,{"$nulls":24},"NonCoding",6.07,5.87,6.13,6.6,6.58,6.35]
["TC0700001855.rn.1",4.49,4.12,1.292,"up",0.00243267995705324,0.00668612309325612,"LOC100363120","ribosomal protein L23-like","chr7","+","mRNARGD2699282_1","Pseudogene",142486056,142487008,30,null,"NA","mRNARGD2699282_1","Rat Genome Database","ribosomal protein L23-like","chr7",100,100,{"$nulls":24},"Pseudogene",4.57,4.4,4.51,4.18,4.19,3.99]
["TC1700002348.rn.1",6.08,5.51,1.485,"up",0.00243333717608844,0.00668612309325612,null,null,"chr17","-",null,"Pseudogene",88087191,88087656,30,null,"NA","ENSRNOT00000057606","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:89774538:89775003:-1 gene:ENSRNOG00000037902 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",6.07,6.09,6.08,5.64,5.44,5.46]
["TC0800001494.rn.1",5.08,5.51,-1.347,"down",0.00243334696883111,0.00668612309325612,"NONMMUG043888","Non-coding transcript identified by NONCODE: Antisense","chr8","+","MTA_TR0900004238.mm","Noncoding",115625987,115642901,110,null,"NA","MTA_TR0900004238.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr8",100,100,{"$nulls":24},"NonCoding",5.09,5.06,5.09,5.71,5.47,5.34]
["TC0500001332.rn.1",5.12,6.07,-1.932,"down",0.00243553948885618,0.00668932335069713,"D4Ertd617e","DNA segment, Chr 4, ERATO Doi 617, expressed","chr5","+","NR_029469","Noncoding",137675131,137675682,30,"4 D2.1|4 54.97 cM",100041290,"NR_029469","RefSeq","Mus musculus DNA segment, Chr 4, ERATO Doi 617, expressed (D4Ertd617e), long non-coding RNA.","chr5",100,100,null,null,"NR_029469","Mm.472885","brain| embryonic tissue| mammary gland| pineal gland| cleavage| juvenile| adult",{"$nulls":19},"NonCoding",4.7,5.36,5.31,6.03,6.3,5.88]
["TC1400000873.rn.1",7.61,7.05,1.474,"up",0.00244862011892079,0.00671648412156532,null,null,"chr14","+",null,"Pseudogene",83608365,83608794,30,null,"NA","ENSRNOT00000052215","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:84296632:84297061:1 gene:ENSRNOG00000033455 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",7.78,7.71,7.35,6.9,7.1,7.14]
["TC0800000839.rn.1",3.65,4.01,-1.283,"down",0.00244954629858813,0.00671788265752674,"LOC102554785","uncharacterized LOC102554785","chr8","+","mRNARGD7518786_1","Noncoding",64268792,64284109,30,null,"NA","mRNARGD7518786_1","Rat Genome Database","uncharacterized LOC102554785","chr8",100,100,{"$nulls":24},"NonCoding",3.62,3.7,3.64,3.99,3.87,4.16]
["TC0300001949.rn.1",10.26,9.18,2.114,"up",0.0024619911715977,0.00674136958414622,"MGI:5011780","PREDICTED:  predicted gene, 19595 (Gm19595), miscRNA.","chr3","+","MTA_TR0200007400.mm","Noncoding",143219666,143220828,20,null,"NA","MTA_TR0200007400.mm","MTA2Rn6","PREDICTED:  predicted gene, 19595 (Gm19595), miscRNA.","chr3",100,100,{"$nulls":24},"NonCoding",10.5,9.94,10.35,9.3,9.45,8.78]
["TC1400002064.rn.1",3.51,3.91,-1.32,"down",0.00246891287132137,0.00675499850176779,"NONMMUG032230","Non-coding transcript identified by NONCODE: Linc","chr14","-","MTA_TR0500001496.mm","Noncoding",80042239,80043783,30,null,"NA","MTA_TR0500001496.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",3.32,3.57,3.63,3.88,3.98,3.86]
["TC1000001822.rn.1",11.49,10.75,1.67,"up",0.00248675388638167,0.00678758926214363,"LOC688936","similar to ribosomal protein S23","chr10","+","LOC688936.aSep08-unspliced","Pseudogene",95702808,95703297,30,null,"NA","LOC688936.aSep08-unspliced","Ace View","similar to ribosomal protein S23","chr10",100,100,{"$nulls":24},"Pseudogene",11.55,11.33,11.59,10.78,10.67,10.8]
["TC1700002223.rn.1",7.15,5.45,3.249,"up",0.00248760255696076,0.00678758926214363,"NONMMUG021830","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","-","MTA_TR0200000109.mm","Noncoding",77829216,77831212,30,null,"NA","MTA_TR0200000109.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",6.84,6.69,7.92,4.79,5.63,5.93]
["TC0200002836.rn.1",3.61,4.23,-1.537,"down",0.00249591920935113,0.00679997060627956,"LOC102546662","uncharacterized LOC102546662","chr2","-","mRNARGD7583637_1","Noncoding",38695963,38703487,30,null,"NA","mRNARGD7583637_1","Rat Genome Database","uncharacterized LOC102546662","chr2",100,100,{"$nulls":24},"NonCoding",3.61,3.53,3.7,4.54,4.18,3.97]
["TC0300001826.rn.1",4.45,5.33,-1.84,"down",0.0024993302633486,0.00680302522636136,"LOC102548146","uncharacterized LOC102548146","chr3","+","mRNARGD7550806_1","Noncoding",131470583,131475651,30,null,"NA","mRNARGD7550806_1","Rat Genome Database","uncharacterized LOC102548146","chr3",100,100,{"$nulls":24},"NonCoding",4.24,4.54,4.58,5.47,5.62,4.89]
["TC0600000340.rn.1",4.33,4.77,-1.357,"down",0.00249934216075172,0.00680302522636136,"NONMMUG008415","Non-coding transcript identified by NONCODE: Antisense","chr6","+","MTA_TR1200000149.mm","Noncoding",28672153,28678466,40,null,"NA","MTA_TR1200000149.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",4.47,4.18,4.34,4.79,4.63,4.89]
["TC2000001489.rn.1",6.2,6.83,-1.548,"down",0.00250155663187615,0.0068067888866417,"LOC100910945","uncharacterized LOC100910945","chr20","-","mRNARGD6495982_1","Noncoding",27362606,27380815,30,null,"NA","mRNARGD6495982_1","Rat Genome Database","uncharacterized LOC100910945","chr20",100,100,{"$nulls":24},"NonCoding",6.44,6.08,6.09,6.78,6.93,6.77]
["TC0200003377.rn.1",3.91,4.23,-1.248,"down",0.00250466514285359,0.00681097968010484,"NONMMUG026211","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300005695.mm","Noncoding",111865289,111870818,30,null,"NA","MTA_TR0300005695.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",3.88,3.84,4.01,4.23,4.25,4.2]
["TC1000000843.rn.1",16.97,16.27,1.625,"up",0.00251832754292102,0.00683849738128514,null,null,"chr10","+",null,"Noncoding",52208250,52208507,30,null,"NA","NONRATT008826","NONCODE","Non-coding transcript identified by NONCODE","chr10",100,100,{"$nulls":24},"NonCoding",16.82,17.32,16.78,16.38,16.25,16.18]
["TC1600001825.rn.1",10.84,10.5,1.266,"up",0.00252599091791085,0.00685601533703666,"LOC498647","similar to poly(rC)-binding protein 2 isoform a","chr16","-","LOC498647.aSep08-unspliced","Pseudogene",68390463,68391699,40,null,"NA","LOC498647.aSep08-unspliced","Ace View","similar to poly(rC)-binding protein 2 isoform a","chr16",100,100,{"$nulls":24},"Pseudogene",10.95,10.8,10.78,10.47,10.58,10.45]
["TC1800001824.rn.1",4.8,4.08,1.647,"up",0.00253187837441597,0.00686563522353728,"NONMMUG020497","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18","-","MTA_TR1800005076.mm","Noncoding",81115647,81119630,30,null,"NA","MTA_TR1800005076.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18",100,100,{"$nulls":24},"NonCoding",4.72,4.81,4.87,3.94,4.13,4.18]
["TC0800002390.rn.1",8.13,11.26,-8.754,"down",0.00253398686189222,0.0068672094984002,"NONMMUG042591","Non-coding transcript identified by NONCODE: Antisense","chr8","-","MTA_TR0900006852.mm","Noncoding",48386225,48386651,30,null,"NA","MTA_TR0900006852.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr8",100,100,{"$nulls":24},"NonCoding",8.17,7.94,8.27,11.19,11.59,11.01]
["TC0700003683.rn.1",9.99,9.26,1.659,"up",0.00253851899379697,0.00687273915344733,"LOC102549035","uncharacterized LOC102549035","chr7","-","mRNARGD7582724_1","Noncoding",130047007,130047936,29,null,"NA","mRNARGD7582724_1","Rat Genome Database","uncharacterized LOC102549035","chr7",100,100,{"$nulls":24},"NonCoding",9.81,10.14,10.02,9.17,9.38,9.22]
["TC0900001299.rn.1",5.72,6.36,-1.558,"down",0.00253948385860244,0.00687273915344733,"LOC102546818","uncharacterized LOC102546818","chr9","+","mRNARGD7730139_1","Noncoding",114620240,114627317,30,null,"NA","mRNARGD7730139_1","Rat Genome Database","uncharacterized LOC102546818","chr9",100,100,{"$nulls":24},"NonCoding",5.47,5.84,5.84,6.52,6.42,6.13]
["TC0400000327.rn.1",9.82,8.22,3.031,"up",0.00254677478813057,0.0068804958403186,"LOC500013","similar to sterile alpha motif domain containing 9-like","chr4","+","LOC500013.aSep08-unspliced","Pseudogene",31234306,31235711,30,null,"NA","LOC500013.aSep08-unspliced","Ace View","similar to sterile alpha motif domain containing 9-like","chr4",100,100,{"$nulls":24},"Pseudogene",9.49,9.9,10.08,7.84,8.5,8.31]
["TC0700003590.rn.1",18.14,18.52,-1.301,"down",0.00256345749103146,0.00690783816009299,"Gp_dh_N.0","Unannotated AceView Transcript","chr7","-","Gp_dh_N.0.aSep08-unspliced","Pseudogene",124076558,124077578,40,null,"NA","Gp_dh_N.0.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr7",100,100,{"$nulls":24},"Pseudogene",18.09,18.13,18.21,18.54,18.64,18.37]
["TC0X00001098.rn.1",4.71,5.61,-1.866,"down",0.00256357034694931,0.00690783816009299,"NONMMUG044753","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00001120.mm","Noncoding",127674802,127678335,30,null,"NA","MTA_TR0X00001120.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",4.99,4.73,4.4,5.57,5.4,5.85]
["TC0700001555.rn.1",5.69,6.66,-1.959,"down",0.00256516688605325,0.00690783816009299,"LOC102549820","uncharacterized LOC102549820","chr7","+","mRNARGD7633832_1","Noncoding",124500458,124502028,30,null,"NA","mRNARGD7633832_1","Rat Genome Database","uncharacterized LOC102549820","chr7",100,100,{"$nulls":24},"NonCoding",5.78,5.36,5.94,6.53,6.54,6.91]
["TC0900000010.rn.1",5.06,4.6,1.376,"up",0.00256535254946062,0.00690783816009299,"NONMMUG018534","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","+","MTA_TR1700008426.mm","Noncoding",1175932,1178889,30,null,"NA","MTA_TR1700008426.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",4.93,4.98,5.26,4.53,4.68,4.58]
["TC0600001278.rn.1",3.79,4.45,-1.58,"down",0.00256728208469482,0.00691093399864152,"NONMMUG009660","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200002649.mm","Noncoding",113850059,113851336,30,null,"NA","MTA_TR1200002649.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",3.76,3.96,3.65,4.44,4.2,4.72]
["TC1800000385.rn.1",13.44,11.21,4.691,"up",0.00257274146456359,0.00691826905893116,"LOC102555677","uncharacterized LOC102555677","chr18","+","mRNARGD7604300_1","Noncoding",32424376,32437180,14,null,"NA","mRNARGD7604300_1","Rat Genome Database","uncharacterized LOC102555677","chr18",100,100,{"$nulls":24},"NonCoding",13.26,12.82,14.23,11.86,11.33,10.44]
["TC0600002044.rn.1",16.4,15,2.639,"up",0.00258920105149252,0.00694732954363246,null,null,"chr6","-",null,"Noncoding",27595722,27596185,30,null,"NA","NONRATT047882","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",16.04,17.02,16.13,14.83,14.92,15.25]
["TC0100006289.rn.1",4.29,5.24,-1.932,"down",0.00259075604173231,0.00694920905055127,"LOC102554885","uncharacterized LOC102554885","chr1","-","mRNARGD7655762_1","Noncoding",170246957,170264553,30,null,"NA","mRNARGD7655762_1","Rat Genome Database","uncharacterized LOC102554885","chr1",100,100,{"$nulls":24},"NonCoding",4.07,4.45,4.36,5.37,4.75,5.59]
["TC1700000564.rn.1",4.07,3.58,1.404,"up",0.00259112385086916,0.00694920905055127,"NONMMUG010570","Non-coding transcript identified by NONCODE: Linc","chr17","+","MTA_TR1300004674.mm","Noncoding",37709062,37712335,30,null,"NA","MTA_TR1300004674.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",3.89,4.14,4.19,3.61,3.38,3.74]
["TC0400000309.rn.1",8.08,4.7,10.411,"up",0.0025915017114427,0.00694920905055127,"NONMMUG034495","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600000046.mm","Noncoding",29530109,29531885,30,null,"NA","MTA_TR0600000046.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",7.48,8.53,8.22,4.63,4.76,4.71]
["TC1700001434.rn.1",8.84,7.94,1.866,"up",0.00259909943922886,0.00696528175853819,"XLOC_019278","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr17","-","TCONS_00045088","Noncoding",15245346,15247505,30,null,"NA","TCONS_00045088","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr17",100,100,{"$nulls":24},"NonCoding",8.87,8.61,9.05,8.1,8.19,7.53]
["TC1900001500.rn.1",3.36,3.71,-1.275,"down",0.00261243013735978,0.00698699367453068,"LOC690181","similar to S-phase kinase-associated protein 1A (Cyclin A/CDK2-associated protein p19) (p19A) (p19skp1)","chr19","-","LOC690181.aSep08-unspliced","Pseudogene",46145665,46146247,30,null,"NA","LOC690181.aSep08-unspliced","Ace View","similar to S-phase kinase-associated protein 1A (Cyclin A/CDK2-associated protein p19) (p19A) (p19skp1)","chr19",100,100,{"$nulls":24},"Pseudogene",3.29,3.48,3.31,3.75,3.73,3.64]
["TC1700001445.rn.1",9.06,7.92,2.204,"up",0.00261398706892934,0.00698900559864115,"RGD1563503","INTERACTS WITH ammonium chloride","chr17","-","mRNARGD6741520_1","Pseudogene",15521251,15527238,22,null,"NA","mRNARGD6741520_1","Rat Genome Database","INTERACTS WITH ammonium chloride","chr17",100,100,{"$nulls":24},"Pseudogene",9.09,9.19,8.91,7.6,8.01,8.15]
["TC0100007272.rn.1",5.54,5.04,1.414,"up",0.00264654118617047,0.00704784101563195,"LOC690768","hypothetical protein LOC690768","chr1","-","LOC690768.aSep08","Noncoding",227093975,227108594,40,null,"NA","LOC690768.aSep08","Ace View","hypothetical protein LOC690768","chr1",100,100,{"$nulls":24},"NonCoding",5.4,5.49,5.73,5.14,5.02,4.95]
["TC1400001907.rn.1",8.34,8.7,-1.283,"down",0.00265377349394908,0.00706337065921627,"Vom2r-ps40","vomeronasal 2 receptor, pseudogene 40","chr14","-","LOC690856_mapped.aSep08-unspliced","Pseudogene",62388436,62391418,30,null,"NA","LOC690856_mapped.aSep08-unspliced","Ace View","vomeronasal 2 receptor, pseudogene 40","chr14",100,100,{"$nulls":24},"Pseudogene",8.3,8.32,8.41,8.64,8.79,8.67]
["TC0900000856.rn.1",7.49,7.85,-1.283,"down",0.0026618543351873,0.00707927934407721,"LOC102554284","nucleolar protein 56-like","chr9","+","mRNARGD7702952_1","Pseudogene",78987820,78989444,30,null,"NA","mRNARGD7702952_1","Rat Genome Database","nucleolar protein 56-like","chr9",100,100,{"$nulls":24},"Pseudogene",7.43,7.4,7.63,7.86,7.92,7.76]
["TC0200002149.rn.1",6.62,5.57,2.071,"up",0.00266676832383197,0.00708866603722803,"NONMMUG027863","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300004329.mm","Noncoding",230996767,231001461,30,null,"NA","MTA_TR0300004329.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.67,6.88,6.32,5.32,5.53,5.87]
["TC2000001323.rn.1",5.55,4.43,2.173,"up",0.00266843749637357,0.00709093280549262,"NCBI_Gene:100861980","PREDICTED:  uncharacterized LOC100861980 (LOC100861980), miscRNA.","chr20","-","MTA_TR1000002354.mm","Noncoding",12661898,12676366,30,null,"NA","MTA_TR1000002354.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861980 (LOC100861980), miscRNA.","chr20",100,100,{"$nulls":24},"NonCoding",5.54,5.54,5.58,4.31,4.47,4.52]
["TC0100002836.rn.1",8.79,9.43,-1.558,"down",0.00266993557938758,0.00709226984621176,"LOC100910988","type I inositol 145-trisphosphate 5-phosphatase-like","chr1","+","mRNARGD7587817_1","Noncoding",212469859,212482953,40,null,"NA","mRNARGD7587817_1","Rat Genome Database","type I inositol 145-trisphosphate 5-phosphatase-like","chr1",100,100,{"$nulls":24},"NonCoding",8.46,9,8.9,9.55,9.42,9.31]
["TC0500002418.rn.1",3.63,4.42,-1.729,"down",0.0026792224444941,0.00711088969951215,"KnowTID_00005379","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400007901.mm","Noncoding",38577699,38579342,30,null,"NA","MTA_TR0400007901.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",3.31,3.71,3.88,4.6,4.3,4.35]
["TC1800001688.rn.1",4.24,5.26,-2.028,"down",0.00270694737908219,0.00715903668386444,"LOC102551811","uncharacterized LOC102551811","chr18","-","mRNARGD7617734_1","Noncoding",69853777,69863491,30,null,"NA","mRNARGD7617734_1","Rat Genome Database","uncharacterized LOC102551811","chr18",100,100,{"$nulls":24},"NonCoding",4.27,3.84,4.61,5.63,5.19,4.97]
["TC1000004326.rn.1",7.04,5.71,2.514,"up",0.00270744083793549,0.00715903668386444,"LOC102553633","uncharacterized LOC102553633","chr10","-","mRNARGD7565308_1","Noncoding",112512256,112515704,30,null,"NA","mRNARGD7565308_1","Rat Genome Database","uncharacterized LOC102553633","chr10",100,100,{"$nulls":24},"NonCoding",6.86,7.4,6.85,5.55,5.83,5.76]
["TC1900000716.rn.1",5.54,3.79,3.364,"up",0.0027115268606122,0.00716597186911525,"uc009nqk.1","cDNA, clone:Y0G0116D08, strand:unspecified.","chr19","+","MTA_TR0800004690.mm","Noncoding",52465420,52465880,30,null,"NA","MTA_TR0800004690.mm","MTA2Rn6","cDNA, clone:Y0G0116D08, strand:unspecified.","chr19",100,100,{"$nulls":24},"NonCoding",5.99,5.05,5.59,3.92,3.76,3.7]
["TC1500002431.rn.1",8.41,7.5,1.879,"up",0.00272204245163833,0.00718829422733497,null,null,"chr15","-",null,"Pseudogene",108274979,108275793,30,null,"NA","ENSRNOT00000036001","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:111663471:111664285:-1 gene:ENSRNOG00000025918 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",8.34,8.35,8.53,7.39,7.48,7.62]
["TC0200002477.rn.1",16.5,15.8,1.625,"up",0.00272491413595678,0.00719369049478803,null,null,"chr2","-",null,"Noncoding",1791289,1791544,30,null,"NA","NONRATT030614","NONCODE","Non-coding transcript identified by NONCODE","chr2",100,100,{"$nulls":24},"NonCoding",16.3,16.91,16.3,15.75,15.88,15.78]
["TC1400001896.rn.1",5.34,6.05,-1.636,"down",0.00273780909495583,0.00721186092768526,"NONMMUG032466","Non-coding transcript identified by NONCODE: Antisense, Non-coding transcript identified by Luo, et al.","chr14","-","MTA_TR0500001828.mm","Noncoding",60926686,60929150,30,null,"NA","MTA_TR0500001828.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense, Non-coding transcript identified by Luo, et al.","chr14",100,100,{"$nulls":24},"NonCoding",5.14,5.69,5.18,6.17,6.05,5.93]
["TC0500002522.rn.1",4.96,6.21,-2.378,"down",0.00274151030883614,0.00721775925656147,"NONMMUG028892","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400008181.mm","Noncoding",52256160,52260170,30,null,"NA","MTA_TR0400008181.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",4.86,4.77,5.24,5.65,6.17,6.8]
["TC0900002379.rn.1",9.47,9.01,1.376,"up",0.00274313386439177,0.00722093928752075,null,null,"chr9","-",null,"Pseudogene",92792742,92793212,30,null,"NA","ENSRNOT00000023217","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:92523328:92523798:-1 gene:ENSRNOG00000017287 gene_biotype:pseudogene transcript_biotype:pseudogene","chr9",100,100,{"$nulls":24},"Pseudogene",9.66,9.35,9.39,9.09,9.03,8.91]
["TC1400001240.rn.1",5.99,7.89,-3.732,"down",0.00274691114264695,0.00722428959186395,"kujey","Unannotated AceView Transcript","chr14","-","kujey.aSep08","Noncoding",2382122,2391163,200,null,"NA","kujey.aSep08","Ace View","Unannotated AceView Transcript","chr14",100,100,{"$nulls":24},"NonCoding",6.09,5.82,6.07,7.76,7.9,8]
["TC0400001950.rn.1",5.09,6.28,-2.282,"down",0.0027580578529619,0.00724442454171935,"ENSMUSG00000097496","predicted gene, 26653, Non-coding transcript identified by NONCODE: Antisense","chr4","+","MTA_TR0600005460.mm","Noncoding",169999777,170002176,30,null,"NA","MTA_TR0600005460.mm","MTA2Rn6","predicted gene, 26653, Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",5.04,5.05,5.19,5.82,6.33,6.68]
["TC0700000354.rn.1",4.53,5.12,-1.505,"down",0.0027678775611469,0.00726312446638277,"LOC102554052","uncharacterized LOC102554052","chr7","+","mRNARGD7497910_1","Noncoding",20809550,20810933,30,null,"NA","mRNARGD7497910_1","Rat Genome Database","uncharacterized LOC102554052","chr7",100,100,{"$nulls":24},"NonCoding",4.37,4.54,4.67,5.01,5,5.36]
["TC0900002382.rn.1",8.58,9.15,-1.485,"down",0.00279144251382143,0.00730383309347674,"NONMMUG001212","Non-coding transcript identified by NONCODE: Antisense","chr9","-","MTA_TR0100008722.mm","Noncoding",92929154,92930225,30,null,"NA","MTA_TR0100008722.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr9",100,100,{"$nulls":24},"NonCoding",8.83,8.52,8.39,9.18,9.14,9.13]
["TC1700001964.rn.1",3.7,3.26,1.357,"up",0.00280702444918117,0.00733024980558119,"KnowTID_00003767","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17","-","MTA_TR1800000010.mm","Noncoding",57002281,57003185,30,null,"NA","MTA_TR1800000010.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",3.8,3.82,3.49,3.27,3.21,3.29]
["TC1100000181.rn.1",8.24,6.62,3.074,"up",0.00281574184955963,0.00734418193223729,null,null,"chr11","+",null,"Noncoding",27608801,27611005,30,null,"NA","NONRATT012849","NONCODE","Non-coding transcript identified by NONCODE","chr11",100,100,{"$nulls":24},"NonCoding",8.15,7.98,8.6,6.55,6.75,6.56]
["TC0600000072.rn.1",4.47,3.74,1.659,"up",0.00282600816973953,0.00736101183334014,"lutu","Unannotated AceView Transcript","chr6","+","lutu.aSep08","Noncoding",6498491,6509173,70,null,"NA","lutu.aSep08","Ace View","Unannotated AceView Transcript","chr6",100,100,{"$nulls":24},"NonCoding",4.2,4.35,4.85,3.67,3.85,3.69]
["TC1600000341.rn.1",10.22,11.19,-1.959,"down",0.0028578728653821,0.00742023471628111,"NCBI_Gene:100861650","PREDICTED:  uncharacterized LOC100861650, transcript variant 2 (LOC100861650), miscRNA.","chr16","+","MTA_TR0800007217.mm","Noncoding",22314072,22327289,30,null,"NA","MTA_TR0800007217.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861650, transcript variant 2 (LOC100861650), miscRNA.","chr16",100,100,{"$nulls":24},"NonCoding",10.32,10.3,10.05,11.24,11.18,11.14]
["TC0200004418.rn.1",5.07,4.26,1.753,"up",0.00286955034432329,0.00743651484876024,"flashee","Unannotated AceView Transcript","chr2","-","flashee.aSep08","Noncoding",209094966,209100493,70,null,"NA","flashee.aSep08","Ace View","Unannotated AceView Transcript","chr2",100,100,{"$nulls":24},"NonCoding",5.3,4.96,4.96,4.3,4.18,4.31]
["TC1200001044.rn.1",6.97,5.95,2.028,"up",0.00287265921331801,0.00744013168250293,"NONMMUG034349","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","-","MTA_TR0500006527.mm","Noncoding",9259221,9260987,30,null,"NA","MTA_TR0500006527.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",6.67,6.94,7.31,5.54,6.09,6.23]
["TC0100006380.rn.1",4.55,5.43,-1.84,"down",0.00288296103494088,0.00745581069116279,"NONMMUG039003","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR0700013811.mm","Noncoding",174426174,174427160,30,null,"NA","MTA_TR0700013811.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",4.3,4.83,4.53,5.37,5.83,5.08]
["TC0700001558.rn.1",4.51,4.92,-1.329,"down",0.00291735430357524,0.0075188963809207,"LOC102549885","uncharacterized LOC102549885","chr7","+","mRNARGD7664575_1","Noncoding",124791606,124795556,40,null,"NA","mRNARGD7664575_1","Rat Genome Database","uncharacterized LOC102549885","chr7",100,100,{"$nulls":24},"NonCoding",4.49,4.53,4.51,4.9,5.11,4.75]
["TC1100001502.rn.1",4.52,4.07,1.366,"up",0.00293225755062766,0.00754052493145123,"LOC102549087","uncharacterized LOC102549087","chr11","-","mRNARGD7749628_1","Noncoding",53395544,53410291,30,null,"NA","mRNARGD7749628_1","Rat Genome Database","uncharacterized LOC102549087","chr11",100,100,{"$nulls":24},"NonCoding",4.3,4.69,4.58,3.98,4.06,4.17]
["TC0700003106.rn.1",6.98,5.84,2.204,"up",0.00294777012300372,0.00756267227168871,"NONMMUG014492","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004482.mm","Noncoding",90160191,90162860,30,null,"NA","MTA_TR1500004482.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",6.68,7.19,7.06,5.61,5.84,6.07]
["TC1300001058.rn.1",5.97,5.24,1.659,"up",0.00296247470211777,0.00758902050589703,"NONMMUG002838","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","+","MTA_TR0100006050.mm","Noncoding",110278769,110279900,30,null,"NA","MTA_TR0100006050.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",5.91,6.07,5.93,4.93,5.25,5.53]
["TC0X00001992.rn.1",3.17,3.56,-1.31,"down",0.00297377156438572,0.00760599050377408,"KnowTID_00008049","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chrX","-","MTA_TR0X00007665.mm","Noncoding",73683984,73686719,30,null,"NA","MTA_TR0X00007665.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",3.28,3.12,3.1,3.61,3.39,3.69]
["TC1000000798.rn.1",5.27,6.11,-1.79,"down",0.0029802720563019,0.00761272349950304,"NONMMUG006362","Non-coding transcript identified by NONCODE: Antisense","chr10","+","MTA_TR1100002678.mm","Noncoding",48631549,48635171,30,null,"NA","MTA_TR1100002678.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",5.25,5.45,5.11,5.87,5.97,6.5]
["TC1700002222.rn.1",7.79,5.88,3.758,"up",0.00298447505708033,0.00761953501124962,"NONMMUG021830","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","-","MTA_TR0200000110.mm","Noncoding",77828028,77829212,30,null,"NA","MTA_TR0200000110.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",7.07,7.46,8.85,5.69,5.68,6.27]
["TC0300003059.rn.1",8.96,7.22,3.34,"up",0.00300202796087213,0.0076452466952514,"NONMMUG022870","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200012495.mm","Noncoding",29932441,29934706,30,null,"NA","MTA_TR0200012495.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",8.82,8.82,9.23,6.71,6.83,8.13]
["TC0600003064.rn.1",3.69,4.18,-1.404,"down",0.00304001054748514,0.00770555668492808,"NONMMUG009824","Non-coding transcript identified by NONCODE: Antisense","chr6","-","MTA_TR1200006388.mm","Noncoding",127297671,127301287,30,null,"NA","MTA_TR1200006388.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",3.68,3.54,3.84,4.2,4.04,4.3]
["TC0900000359.rn.1",3.33,3.72,-1.31,"down",0.00305023544991193,0.00772336670003083,"ENSMUSG00000097109","predicted gene, 26580, Non-coding transcript identified by NONCODE: Antisense","chr9","+","MTA_TR0100000434.mm","Noncoding",28139154,28141871,30,null,"NA","MTA_TR0100000434.mm","MTA2Rn6","predicted gene, 26580, Non-coding transcript identified by NONCODE: Antisense","chr9",100,100,{"$nulls":24},"NonCoding",3.42,3.2,3.38,3.63,3.82,3.7]
["TC0700002977.rn.1",8.49,9.55,-2.085,"down",0.00309231584518787,0.00779360047193061,"chasee","Unannotated AceView Transcript","chr7","-","chasee.aSep08-unspliced","Pseudogene",74323680,74328626,80,null,"NA","chasee.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr7",100,100,{"$nulls":24},"Pseudogene",8.52,8.52,8.44,9.38,9.62,9.64]
["TC1700002376.rn.1",5.32,4.77,1.464,"up",0.00309557043146346,0.00779646647819031,"NONMMUG010282","Non-coding transcript identified by NONCODE: Linc","chr17","-","MTA_TR1300000206.mm","Noncoding",90697777,90704821,50,null,"NA","MTA_TR1300000206.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",5.29,5.37,5.31,4.69,4.84,4.79]
["TC1400002328.rn.1",2.95,3.28,-1.257,"down",0.0031100086765012,0.00781936035888006,"ENSMUSG00000086749","predicted gene 12037, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr14","-","MTA_TR1100008987.mm","Noncoding",105055937,105056381,30,null,"NA","MTA_TR1100008987.mm","MTA2Rn6","predicted gene 12037, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr14",100,100,{"$nulls":24},"NonCoding",2.92,2.97,2.96,3.41,3.29,3.13]
["TC0300000892.rn.1",6.66,5.69,1.959,"up",0.00314049322587595,0.00786300199289293,"NONMMUG023495","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200003785.mm","Noncoding",62714850,62716910,30,null,"NA","MTA_TR0200003785.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",6.72,6.46,6.8,5.62,5.3,6.14]
["TC0X00002510.rn.1",3.41,3.84,-1.347,"down",0.00314293656616045,0.00786662431374321,"NONMMUG044971","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00006387.mm","Noncoding",142084439,142085624,30,null,"NA","MTA_TR0X00006387.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",3.47,3.32,3.45,3.87,3.75,3.9]
["TC0300000832.rn.1",5.4,4.53,1.828,"up",0.00316670946786793,0.00790471478176948,"LOC102546738","uncharacterized LOC102546738","chr3","+","mRNARGD7523109_1","Noncoding",59804200,59827943,30,null,"NA","mRNARGD7523109_1","Rat Genome Database","uncharacterized LOC102546738","chr3",100,100,{"$nulls":24},"NonCoding",5.42,5.31,5.48,4.66,4.56,4.36]
["TC0200003680.rn.1",6.22,5,2.329,"up",0.00317760044677607,0.00791597552860277,null,null,"chr2","-",null,"Pseudogene",142969708,142970307,30,null,"NA","ENSRNOT00000039100","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:162653532:162654131:-1 gene:ENSRNOG00000021595 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",6.48,6.18,6,5.23,5.33,4.43]
["TC0900000707.rn.1",6.15,7.36,-2.313,"down",0.00320680484607621,0.00796132728043302,"NONMMUG000698","Non-coding transcript identified by NONCODE: Antisense","chr9","+","MTA_TR0100001324.mm","Noncoding",65405886,65408924,30,null,"NA","MTA_TR0100001324.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr9",100,100,{"$nulls":24},"NonCoding",6.24,5.98,6.23,7.2,7.54,7.34]
["TC0X00001726.rn.1",9.82,10.36,-1.454,"down",0.00323156258735965,0.00799878508193566,null,null,"chrX","-",null,"Pseudogene",42745371,42746378,30,null,"NA","ENSRNOT00000049223","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:43052415:43053422:-1 gene:ENSRNOG00000049366 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",9.75,9.9,9.82,10.42,10.46,10.19]
["TC0500002408.rn.1",17.06,16.43,1.548,"up",0.00324668985219723,0.00802437294158419,null,null,"chr5","-",null,"Noncoding",36264365,36264640,30,null,"NA","NONRATT044532","NONCODE","Non-coding transcript identified by NONCODE","chr5",100,100,{"$nulls":24},"NonCoding",16.89,17.38,16.9,16.39,16.53,16.38]
["TC0700000440.rn.1",4.11,4.41,-1.231,"down",0.00325179638578894,0.00802941791294096,"LOC102551481","uncharacterized LOC102551481","chr7","+","mRNARGD7626893_1","Noncoding",27822514,27879020,90,null,"NA","mRNARGD7626893_1","Rat Genome Database","uncharacterized LOC102551481","chr7",100,100,{"$nulls":24},"NonCoding",4.11,4.11,4.11,4.34,4.34,4.54]
["TC0200003152.rn.1",4.28,3.78,1.414,"up",0.00326489399450487,0.00805260167237599,"LOC102556443","uncharacterized LOC102556443","chr2","-","mRNARGD7594671_1","Noncoding",78093604,78095366,30,null,"NA","mRNARGD7594671_1","Rat Genome Database","uncharacterized LOC102556443","chr2",100,100,{"$nulls":24},"NonCoding",4.09,4.34,4.4,3.6,3.93,3.81]
["TC0200003185.rn.1",7.98,7.4,1.495,"up",0.00328563782539767,0.00808081759379625,null,null,"chr2","-",null,"Pseudogene",82274669,82275166,30,null,"NA","ENSRNOT00000014009","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:101940478:101940975:-1 gene:ENSRNOG00000010548 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",7.92,7.96,8.05,7.15,7.62,7.42]
["TC0200004278.rn.1",16.91,15.63,2.428,"up",0.00331803128281841,0.00813399963503226,null,null,"chr2","-",null,"Noncoding",199683773,199684352,30,null,"NA","NONRATT031977","NONCODE","Non-coding transcript identified by NONCODE","chr2",100,100,{"$nulls":24},"NonCoding",16.7,17.41,16.62,15.5,15.4,15.98]
["TC1900001649.rn.1",6.95,6.2,1.682,"up",0.00333803237254719,0.00816337732202681,"NCBI_Gene:100861897","PREDICTED:  uncharacterized LOC100861897, transcript variant 2 (LOC100861897), miscRNA.","chr19","-","MTA_TR0800009564.mm","Noncoding",55917403,55920034,30,null,"NA","MTA_TR0800009564.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861897, transcript variant 2 (LOC100861897), miscRNA.","chr19",100,100,{"$nulls":24},"NonCoding",6.97,6.77,7.1,6.29,6.3,6]
["TC0200001569.rn.1",8,9.02,-2.028,"down",0.00335360314366848,0.00819204602335242,"NONMMUG027114","Non-coding transcript identified by NONCODE: Antisense,  RCB-0545 OHTA cDNA, RIKEN full-length enriched library, clone:G430028I15 product:unclassifiable, full insert sequence.","chr2","+","MTA_TR0300002349.mm","Noncoding",188523961,188526903,30,null,"NA","MTA_TR0300002349.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense,  RCB-0545 OHTA cDNA, RIKEN full-length enriched library, clone:G430028I15 product:unclassifiable, full insert sequence.","chr2",100,100,{"$nulls":24},"NonCoding",8.1,7.72,8.18,8.95,9.11,9]
["TC0600002479.rn.1",16.53,15.21,2.497,"up",0.00337967897904463,0.00822707448780609,null,null,"chr6","-",null,"Noncoding",76309910,76310489,30,null,"NA","NONRATT048133","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",16.35,16.98,16.25,14.94,15,15.68]
["TC0300004414.rn.1",14.84,15.54,-1.625,"down",0.00340156988987615,0.00826530571507044,null,null,"chr3","-",null,"Pseudogene",145509584,145510413,30,null,"NA","ENSRNOT00000074104","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:151875499:151876328:-1 gene:ENSRNOG00000049254 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",14.82,14.82,14.88,15.47,15.74,15.41]
["TC0300002332.rn.1",5.36,4.37,1.986,"up",0.00340919589155691,0.00827391615340413,"NONMMUG025509","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200008831.mm","Noncoding",162695212,162697542,30,null,"NA","MTA_TR0200008831.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.85,5.51,5.73,4.42,4.18,4.51]
["TC0300001829.rn.1",17.36,16.27,2.129,"up",0.00345654233355784,0.00834750408400295,null,null,"chr3","+",null,"Noncoding",132355949,132356271,30,null,"NA","NONRATT035858","NONCODE","Non-coding transcript identified by NONCODE","chr3",100,100,{"$nulls":24},"NonCoding",17.15,17.96,16.96,16.24,16.24,16.32]
["TC1100001617.rn.1",6.93,6.06,1.828,"up",0.00348518098186355,0.00839565647426872,"NONMMUG016538","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","-","MTA_TR1600002378.mm","Noncoding",62313417,62319832,30,null,"NA","MTA_TR1600002378.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",6.97,7.06,6.76,5.96,5.75,6.48]
["TC2000001592.rn.1",5.83,7.71,-3.681,"down",0.00353800952308602,0.00848175040374376,"NCBI_Gene:100862347","PREDICTED:  uncharacterized LOC100862347 (LOC100862347), miscRNA.","chr20","-","MTA_TR1000006595.mm","Noncoding",34396880,34419055,27,null,"NA","MTA_TR1000006595.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862347 (LOC100862347), miscRNA.","chr20",100,100,{"$nulls":24},"NonCoding",5.66,5.54,6.28,7.55,8.22,7.37]
["TC0200002540.rn.1",9.73,11.05,-2.497,"down",0.00355446056899521,0.00850016062213281,"MGI:5011548","PREDICTED:  predicted gene, 19363 (Gm19363), miscRNA.","chr2","-","MTA_TR1300006786.mm","Noncoding",11678687,11730076,30,null,"NA","MTA_TR1300006786.mm","MTA2Rn6","PREDICTED:  predicted gene, 19363 (Gm19363), miscRNA.","chr2",100,100,{"$nulls":24},"NonCoding",9.69,9.4,10.09,10.97,11.12,11.06]
["TC0800000234.rn.1",5.64,4.93,1.636,"up",0.00356658143565745,0.00851340078686084,"LOC100360348","hypothetical LOC100360348","chr8","+","mRNARGD6645233_1","Pseudogene",22543361,22548147,30,null,"NA","mRNARGD6645233_1","Rat Genome Database","hypothetical LOC100360348","chr8",100,100,{"$nulls":24},"Pseudogene",5.49,5.62,5.8,4.81,5.13,4.85]
["TC0300000276.rn.1",4.01,4.31,-1.231,"down",0.00357661515981539,0.00852839834470187,"NONMMUG022626","Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200002254.mm","Noncoding",12176417,12182088,30,null,"NA","MTA_TR0200002254.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",4.02,4.07,3.95,4.33,4.39,4.2]
["TC0800001823.rn.1",11.68,10.9,1.717,"up",0.0035790037773302,0.00853076091983579,null,null,"chr8","+",null,"Pseudogene",132012206,132012995,30,null,"NA","ENSRNOT00000044694","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:131167003:131167792:1 gene:ENSRNOG00000025482 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",11.76,11.77,11.51,10.82,11.03,10.84]
["TC0400000301.rn.1",6.9,5.81,2.129,"up",0.00359102609565098,0.00855102320871188,"NONMMUG034486","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600000023.mm","Noncoding",28533509,28534558,30,null,"NA","MTA_TR0600000023.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",6.86,6.84,7.01,5.69,5.66,6.07]
["TC0300001380.rn.1",3.82,4.51,-1.613,"down",0.0035994507323405,0.00856169501184264,"NONMMUG024139","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200005239.mm","Noncoding",101844331,101846922,30,null,"NA","MTA_TR0200005239.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",3.58,4.19,3.68,4.54,4.58,4.41]
["TC0400002094.rn.1",6.5,5.01,2.809,"up",0.00362842995550669,0.00859063060612058,"uc009eue.1","0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130016K14 product:unclassifiable, full insert sequence.","chr4","+","MTA_TR0600005957.mm","Noncoding",183881009,183885551,30,null,"NA","MTA_TR0600005957.mm","MTA2Rn6","0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130016K14 product:unclassifiable, full insert sequence.","chr4",100,100,{"$nulls":24},"NonCoding",6.57,6.11,6.83,4.56,5.06,5.41]
["TC0100007430.rn.1",4.47,5.87,-2.639,"down",0.00366732783232613,0.00864501991794507,"NONMMUG021029","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR1900004440.mm","Noncoding",241795630,241799438,30,null,"NA","MTA_TR1900004440.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",4.27,4.52,4.62,5.91,5.94,5.76]
["TC0200004231.rn.1",6.72,5.84,1.84,"up",0.00369530989778677,0.00868387827847051,"ENSMUSG00000083284","predicted gene 13688, ribosomal protein L15 (Rpl15) pseudogene","chr2","-","MTA_TR0200003943.mm","Pseudogene",198194661,198195272,30,null,"NA","MTA_TR0200003943.mm","MTA2Rn6","predicted gene 13688, ribosomal protein L15 (Rpl15) pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",6.94,6.42,6.8,6.02,6.08,5.41]
["TC0100002863.rn.1",12.58,13.19,-1.526,"down",0.00370526303637164,0.00869667939532654,"LOC681212","similar to transmembrane protein 49","chr1","+","LOC681212.aSep08-unspliced","Pseudogene",213545240,213546472,30,null,"NA","LOC681212.aSep08-unspliced","Ace View","similar to transmembrane protein 49","chr1",100,100,{"$nulls":24},"Pseudogene",12.8,12.3,12.65,13.08,13.37,13.13]
["TC0700000300.rn.1",5.68,6.42,-1.67,"down",0.003722809245974,0.00872413056200175,"NONMMUG018045","Non-coding transcript identified by NONCODE: Linc","chr7","+","MTA_TR1700006769.mm","Noncoding",15791557,15794713,30,null,"NA","MTA_TR1700006769.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",5.82,5.82,5.41,6.13,6.43,6.69]
["TC0200002567.rn.1",6.09,6.41,-1.248,"down",0.00373750664986294,0.00874753813187404,null,null,"chr2","-",null,"Pseudogene",18119525,18120514,30,null,"NA","ENSRNOT00000051938","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:17995429:17996418:-1 gene:ENSRNOG00000033408 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",6.18,6.13,5.97,6.44,6.36,6.42]
["TC0100007926.rn.1",10.47,11.56,-2.129,"down",0.00374640882358561,0.00876111132352399,null,null,"chr1","-",null,"Noncoding",275700128,275702173,30,null,"NA","NONRATT007896","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",10.24,10.26,10.92,11.9,11.73,11.06]
["TC0500002591.rn.1",3.63,4.06,-1.347,"down",0.00374813754580651,0.00876111132352399,"kleevo","Unannotated AceView Transcript","chr5","-","kleevo.aSep08","Pseudogene",58215929,58222509,80,null,"NA","kleevo.aSep08","Ace View","Unannotated AceView Transcript","chr5",100,100,{"$nulls":24},"Pseudogene",3.6,3.68,3.61,4.22,3.85,4.12]
["TC1800000698.rn.1",4.1,4.51,-1.329,"down",0.00375950529585853,0.00877537845933331,"KnowTID_00003865","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr18","+","MTA_TR1800002037.mm","Noncoding",61257948,61258892,30,null,"NA","MTA_TR1800002037.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",4.09,4.08,4.13,4.57,4.45,4.52]
["TC1300002258.rn.1",3.62,3.91,-1.223,"down",0.00377903229186252,0.00880675743787816,"NONMMUG002887","Non-coding transcript identified by NONCODE: Antisense","chr13","-","MTA_TR0100012332.mm","Noncoding",113375511,113403634,60,null,"NA","MTA_TR0100012332.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr13",100,100,{"$nulls":24},"NonCoding",3.53,3.71,3.62,3.81,3.93,4]
["TC0300002556.rn.1",6.64,7.46,-1.765,"down",0.00379001643033717,0.00882245635276706,"ENSMUSG00000090589","predicted gene 17180, novel transcript","chr3","+","MTA_TR0200009599.mm","Noncoding",175474769,175476413,40,null,"NA","MTA_TR0200009599.mm","MTA2Rn6","predicted gene 17180, novel transcript","chr3",100,100,{"$nulls":24},"NonCoding",6.67,6.67,6.59,7.56,7.53,7.29]
["TC0700001017.rn.1",6.38,6.72,-1.266,"down",0.00381720625617382,0.00885769301041884,"LOC686112","similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)","chr7","+","mRNARGD6681358_1","Pseudogene",78062308,78063477,30,null,"NA","mRNARGD6681358_1","Rat Genome Database","similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)","chr7",100,100,{"$nulls":24},"Pseudogene",6.44,6.45,6.26,6.76,6.67,6.73]
["TC0800001309.rn.1",4.8,4.2,1.516,"up",0.003825545017052,0.00886638325433093,"NONMMUG043616","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","+","MTA_TR0900003751.mm","Noncoding",102644413,102647659,30,null,"NA","MTA_TR0900003751.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",4.66,4.64,5.09,4.3,3.98,4.33]
["TC0400001127.rn.1",6.82,7.59,-1.705,"down",0.00387602465957617,0.00894184322229578,"ENSMUSG00000092386","predicted gene 20536, Non-coding transcript identified by NONCODE: Antisense, putative novel transcript","chr4","+","MTA_TR0600002906.mm","Noncoding",100476759,100482605,30,null,"NA","MTA_TR0600002906.mm","MTA2Rn6","predicted gene 20536, Non-coding transcript identified by NONCODE: Antisense, putative novel transcript","chr4",100,100,{"$nulls":24},"NonCoding",7.09,6.42,6.94,7.71,7.73,7.32]
["TC1500002114.rn.1",6.84,9.46,-6.148,"down",0.00388407327635861,0.0089518690305991,"KnowTID_00002531","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15","-","MTA_TR1400007586.mm","Noncoding",59984483,59986159,30,null,"NA","MTA_TR1400007586.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",7.14,6.57,6.8,9.62,9.65,9.12]
["TC1900001009.rn.1",5.19,7.1,-3.758,"down",0.00389733964760937,0.00897173164837296,"NONMMUG041321","Non-coding transcript identified by NONCODE: Linc","chr19","-","MTA_TR0800003535.mm","Noncoding",11146396,11148082,30,null,"NA","MTA_TR0800003535.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr19",100,100,{"$nulls":24},"NonCoding",5.31,5.14,5.13,6.66,7.02,7.62]
["TC0400000183.rn.1",4.82,6.24,-2.676,"down",0.00389989567893874,0.00897404793202343,"KnowTID_00005787","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0500007127.mm","Noncoding",12503960,12506668,30,null,"NA","MTA_TR0500007127.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",4.69,4.95,4.82,6.24,6.48,6.01]
["TC1500002348.rn.1",5.29,6.49,-2.297,"down",0.00391494565888002,0.00899358706148872,"NONMMUG013765","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr15","-","MTA_TR1400008128.mm","Noncoding",96626473,96818069,111,null,"NA","MTA_TR1400008128.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr15",100,100,{"$nulls":24},"NonCoding",5.34,5.16,5.37,6.4,6.23,6.85]
["TC0900002092.rn.1",5.38,4.78,1.516,"up",0.00392503066731953,0.00900326260689391,"NONMMUG000827","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR0100007864.mm","Noncoding",69843594,69846420,30,null,"NA","MTA_TR0100007864.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",5.15,5.35,5.64,4.88,4.68,4.79]
["TC1000001379.rn.1",9.26,8.53,1.659,"up",0.0039607096292193,0.00906529226284019,null,null,"chr10","+",null,"Pseudogene",76541088,76541556,30,null,"NA","ENSRNOT00000036617","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:76421551:76422019:1 gene:ENSRNOG00000046701 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",9.46,9.13,9.19,8.55,8.78,8.25]
["TC1000003264.rn.1",5.09,5.95,-1.815,"down",0.00396394278023608,0.00906941184056348,"NONMMUG006818","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1100004122.mm","Noncoding",62928398,62931923,30,null,"NA","MTA_TR1100004122.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",4.75,5.31,5.2,5.63,5.87,6.34]
["TC1300000422.rn.1",7.26,8.5,-2.362,"down",0.00398823714701925,0.00910141745797461,"LOC102549528","uncharacterized LOC102549528","chr13","+","mRNARGD7644304_1","Noncoding",60568311,60572099,30,null,"NA","mRNARGD7644304_1","Rat Genome Database","uncharacterized LOC102549528","chr13",100,100,{"$nulls":24},"NonCoding",7.07,7.24,7.48,8.44,8.53,8.54]
["TC0100006390.rn.1",7.04,7.51,-1.385,"down",0.00399402612424635,0.00910262763110514,null,null,"chr1","-",null,"Pseudogene",174825777,174826069,30,null,"NA","ENSRNOT00000047859","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:181825607:181825899:-1 gene:ENSRNOG00000043180 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",7.09,6.97,7.07,7.57,7.56,7.41]
["TC1000001804.rn.1",10.4,9.8,1.516,"up",0.00403791041493427,0.00916375593496957,"LOC100363406","hypothetical LOC100363406","chr10","+","mRNARGD6580456_1","Pseudogene",95130709,95133533,30,null,"NA","mRNARGD6580456_1","Rat Genome Database","hypothetical LOC100363406","chr10",100,100,{"$nulls":24},"Pseudogene",10.55,10.42,10.23,9.88,9.82,9.7]
["TC0400002144.rn.1",6.94,7.33,-1.31,"down",0.00405110523344096,0.00918509023589995,"NCBI_Gene:100504364","PREDICTED:  predicted gene, 20192 (Gm20192), miscRNA.","chr4","-","MTA_TR0500000723.mm","Noncoding",4005815,4008324,30,null,"NA","MTA_TR0500000723.mm","MTA2Rn6","PREDICTED:  predicted gene, 20192 (Gm20192), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",6.81,6.91,7.11,7.41,7.35,7.24]
["TC0700000864.rn.1",3.43,3.86,-1.347,"down",0.00407658935500951,0.00922183014531452,"NONMMUG004958","Non-coding transcript identified by NONCODE: Linc","chr7","+","MTA_TR1000004832.mm","Noncoding",68605330,68607801,30,null,"NA","MTA_TR1000004832.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",3.25,3.51,3.53,3.78,3.92,3.88]
["TC0100001928.rn.1",5.09,5.64,-1.464,"down",0.00408643728438646,0.00923929481544673,"klawglar","Unannotated AceView Transcript","chr1","+","klawglar.aSep08-unspliced","Noncoding",146659374,146706033,70,null,"NA","klawglar.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"NonCoding",5.19,5.03,5.06,5.8,5.57,5.54]
["TC0100005714.rn.1",8.54,6.82,3.294,"up",0.00409941249684422,0.00925311119766624,"NONMMUG038268","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR0700011954.mm","Noncoding",128329864,128330478,30,null,"NA","MTA_TR0700011954.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",7.67,8.79,9.15,6.67,6.74,7.04]
["TC0500000720.rn.1",8.62,9.58,-1.945,"down",0.00412720310938071,0.00929115266082777,"LOC685156","similar to NADH-ubiquinone oxidoreductase 13 kDa-B subunit (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13)","chr5","+","LOC685156.aSep08-unspliced","Pseudogene",75985980,75986421,30,null,"NA","LOC685156.aSep08-unspliced","Ace View","similar to NADH-ubiquinone oxidoreductase 13 kDa-B subunit (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13)","chr5",100,100,{"$nulls":24},"Pseudogene",8.75,8.75,8.36,9.73,9.51,9.51]
["TC0800003271.rn.1",5.92,8.78,-7.26,"down",0.00414832899008815,0.00932099636357797,"NCBI_Gene:100862137","PREDICTED:  uncharacterized LOC100862137 (LOC100862137), miscRNA.","chr8","-","MTA_TR0900009545.mm","Noncoding",111647361,111665794,22,null,"NA","MTA_TR0900009545.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862137 (LOC100862137), miscRNA.","chr8",100,100,{"$nulls":24},"NonCoding",6.03,5.93,5.79,8.77,9.35,8.21]
["TC0200001485.rn.1",5.55,5.01,1.454,"up",0.00419730230482466,0.0093934611558546,"NONMMUG026996","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300001865.mm","Noncoding",183872064,183875523,30,null,"NA","MTA_TR0300001865.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.53,5.36,5.75,4.78,5.03,5.22]
["TC1400000687.rn.1",4.36,5.76,-2.639,"down",0.00421503386683411,0.00942038242294294,"NONMMUG032403","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500008438.mm","Noncoding",66490499,66493053,30,null,"NA","MTA_TR0500008438.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",4.14,4.29,4.64,5.75,5.25,6.29]
["TC0300003632.rn.1",5.89,5.04,1.803,"up",0.00422041759527546,0.00942567164406403,"NONMMUG023719","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200014324.mm","Noncoding",79348366,79350622,30,null,"NA","MTA_TR0200014324.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.84,6,5.84,4.97,4.7,5.44]
["TC0500000231.rn.1",16.41,15.18,2.346,"up",0.00424935920702069,0.00946961113343892,null,null,"chr5","+",null,"Noncoding",26418678,26419255,30,null,"NA","NONRATT042656","NONCODE","Non-coding transcript identified by NONCODE","chr5",100,100,{"$nulls":24},"NonCoding",16.22,16.79,16.23,15.02,14.92,15.61]
["TC2000001789.rn.1",11.87,11.45,1.338,"up",0.00425792960862616,0.00948141202813037,null,null,"chr20","-",null,"Pseudogene",55412447,55412921,30,null,"NA","ENSRNOT00000045674","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:57014879:57015353:-1 gene:ENSRNOG00000037601 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",11.97,11.87,11.76,11.43,11.56,11.36]
["TC1800000147.rn.1",6.89,7.43,-1.454,"down",0.00429328720520929,0.00953460675562638,"NONMMUG019486","Non-coding transcript identified by NONCODE: Linc","chr18","+","MTA_TR1800000505.mm","Noncoding",15868984,15870028,30,null,"NA","MTA_TR1800000505.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",6.69,6.83,7.16,7.32,7.38,7.59]
["TC0100007787.rn.1",3.84,4.47,-1.548,"down",0.00431191579107823,0.00954860348139151,"LOC102549072","uncharacterized LOC102549072","chr1","-","mRNARGD7603055_1","Noncoding",265030898,265043053,60,null,"NA","mRNARGD7603055_1","Rat Genome Database","uncharacterized LOC102549072","chr1",100,100,{"$nulls":24},"NonCoding",3.91,3.88,3.74,4.15,4.46,4.81]
["TC0300003296.rn.1",4.04,4.63,-1.505,"down",0.00432956138494479,0.00954860348139151,"ENSMUSG00000085001","expressed sequence BB114351, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr3","-","MTA_TR0200013303.mm","Noncoding",58892274,58898779,30,null,"NA","MTA_TR0200013303.mm","MTA2Rn6","expressed sequence BB114351, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr3",100,100,{"$nulls":24},"NonCoding",4.19,4.21,3.71,4.71,4.61,4.57]
["TC0900001426.rn.1",16.14,14.79,2.549,"up",0.00436127869580164,0.00957287998796693,null,null,"chr9","-",null,"Noncoding",7996321,7996898,30,null,"NA","NONRATT057426","NONCODE","Non-coding transcript identified by NONCODE","chr9",100,100,{"$nulls":24},"NonCoding",15.92,16.71,15.8,14.51,14.61,15.25]
["TC1500001335.rn.1",6.21,6.84,-1.548,"down",0.00439602752083054,0.00963332837950641,"LOC100909559","uncharacterized LOC100909559","chr15","-","mRNARGD6502993_1","Noncoding",10460573,10462358,40,null,"NA","mRNARGD6502993_1","Rat Genome Database","uncharacterized LOC100909559","chr15",100,100,{"$nulls":24},"NonCoding",5.97,6.27,6.4,6.74,7.05,6.73]
["TC1400000073.rn.1",4.37,4.8,-1.347,"down",0.00441137117511354,0.00965927035739736,null,null,"chr14","+",null,"Pseudogene",4076762,4077753,30,null,"NA","ENSRNOT00000072731","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:4072176:4073167:1 gene:ENSRNOG00000050048 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",4.37,4.37,4.37,4.75,4.99,4.66]
["TC0300001844.rn.1",5.05,5.93,-1.84,"down",0.00442474938856995,0.00966912123511251,"NONMMUG024874","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200007081.mm","Noncoding",134514117,134515673,30,null,"NA","MTA_TR0200007081.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.83,5.01,5.31,6.14,5.51,6.14]
["TC0800002861.rn.1",8.93,9.46,-1.444,"down",0.0044256569639254,0.00966912123511251,null,null,"chr8","-",null,"Pseudogene",76479665,76479941,30,null,"NA","ENSRNOT00000014748","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:76596305:76596581:1 gene:ENSRNOG00000011098 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",8.98,8.92,8.88,9.61,9.61,9.17]
["TC1200001264.rn.1",7.36,4.98,5.205,"up",0.00443607068387922,0.00967712970609895,"LOC102553358","uncharacterized LOC102553358","chr12","-","mRNARGD7504678_1","Noncoding",20203418,20209318,40,null,"NA","mRNARGD7504678_1","Rat Genome Database","uncharacterized LOC102553358","chr12",100,100,{"$nulls":24},"NonCoding",7.12,8.67,6.3,5.02,4.5,5.41]
["TC0700001531.rn.1",4.86,5.32,-1.376,"down",0.00444614028946261,0.00969626101686769,"NCBI_Gene:100862061","PREDICTED:  uncharacterized LOC100862061 (LOC100862061), miscRNA.","chr7","+","MTA_TR1500002308.mm","Noncoding",123583069,123585270,30,null,"NA","MTA_TR1500002308.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862061 (LOC100862061), miscRNA.","chr7",100,100,{"$nulls":24},"NonCoding",4.9,4.74,4.94,5.33,5.47,5.16]
["TC0100001802.rn.1",7.84,6.97,1.828,"up",0.00446102897666244,0.00972058885519358,"LOC685193","similar to 60S ribosomal protein L7a","chr1","+","LOC685193.aSep08-unspliced","Pseudogene",137511639,137512456,30,null,"NA","LOC685193.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L7a","chr1",100,100,{"$nulls":24},"Pseudogene",7.97,7.96,7.59,7.18,6.67,7.07]
["TC2000001512.rn.1",4.66,4.16,1.414,"up",0.00446361405699718,0.00972500185427041,null,null,"chr20","-",null,"Pseudogene",29279992,29280386,30,null,"NA","ENSRNOT00000074647","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:31084864:31085258:-1 gene:ENSRNOG00000048535 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",4.78,4.61,4.6,4.2,4.07,4.22]
["TC0200002143.rn.1",6.33,4.39,3.837,"up",0.00452325175946695,0.00982413182216809,"NONMMUG027859","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300004326.mm","Noncoding",230860084,230861540,30,null,"NA","MTA_TR0300004326.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.82,6.91,6.27,4.43,4.06,4.67]
["TC0700001548.rn.1",3.72,3.08,1.558,"up",0.00453307183638137,0.00983440139555982,"NONMMUG015093","Non-coding transcript identified by NONCODE: Antisense","chr7","+","MTA_TR1500002366.mm","Noncoding",124247701,124248155,30,null,"NA","MTA_TR1500002366.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",3.97,3.74,3.44,2.89,3.13,3.22]
["TC0400003389.rn.1",5.65,4.83,1.765,"up",0.00455640962665314,0.00987023215171364,"NONMMUG036066","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600009103.mm","Noncoding",126049905,126052733,30,null,"NA","MTA_TR0600009103.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",5.59,5.65,5.7,4.53,4.71,5.25]
["TC1300002024.rn.1",3.99,4.76,-1.705,"down",0.00455805496171974,0.00987139737059001,"LOC102549669","uncharacterized LOC102549669","chr13","-","mRNARGD7604614_1","Noncoding",95493344,95521552,30,null,"NA","mRNARGD7604614_1","Rat Genome Database","uncharacterized LOC102549669","chr13",100,100,{"$nulls":24},"NonCoding",4.04,4.08,3.86,5.19,4.53,4.55]
["TC1000003254.rn.1",7.03,7.83,-1.741,"down",0.00461787462279034,0.00995249380551998,"NCBI_Gene:100861790","PREDICTED:  uncharacterized LOC100861790 (LOC100861790), miscRNA.","chr10","-","MTA_TR1100004158.mm","Noncoding",62637432,62638863,30,null,"NA","MTA_TR1100004158.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861790 (LOC100861790), miscRNA.","chr10",100,100,{"$nulls":24},"NonCoding",6.96,6.94,7.2,7.78,8.05,7.66]
["TC0300001791.rn.1",6.9,8.47,-2.969,"down",0.00463043030436436,0.00997191812945139,"NONMMUG024792","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200006915.mm","Noncoding",127530170,127532570,30,null,"NA","MTA_TR0200006915.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",7.03,6.41,7.26,7.88,8.76,8.78]
["TC1700001089.rn.1",4.37,4.05,1.248,"up",0.00465274360825476,0.0100033591847586,"ENSMUSG00000081181","predicted gene 13353, ribosomal protein S26 (Rps26) pseudogene","chr17","+","MTA_TR0200000672.mm","Pseudogene",85259879,85259965,30,null,"NA","MTA_TR0200000672.mm","MTA2Rn6","predicted gene 13353, ribosomal protein S26 (Rps26) pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",4.4,4.44,4.27,3.96,4.08,4.11]
["TC0700001785.rn.1",8.49,10.4,-3.758,"down",0.00465303156086773,0.0100033591847586,"LOC100909574","uncharacterized LOC100909574","chr7","+","mRNARGD6503070_1","Noncoding",140414227,140415104,30,null,"NA","mRNARGD6503070_1","Rat Genome Database","uncharacterized LOC100909574","chr7",100,100,{"$nulls":24},"NonCoding",8.54,8.6,8.32,10.29,10.69,10.22]
["TC1900001137.rn.1",7.28,8.04,-1.693,"down",0.00470961439396329,0.0100913669221088,"KnowTID_00007085","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr19","-","MTA_TR0800003213.mm","Noncoding",22028564,22029915,35,null,"NA","MTA_TR0800003213.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr19",100,100,{"$nulls":24},"NonCoding",7.37,6.87,7.59,8.21,8.07,7.85]
["TC1100000448.rn.1",4.22,4.55,-1.257,"down",0.00471246291780043,0.0100949800647566,"borloy","Unannotated AceView Transcript","chr11","+","borloy.aSep08","Noncoding",44293289,44306567,90,null,"NA","borloy.aSep08","Ace View","Unannotated AceView Transcript","chr11",100,100,{"$nulls":24},"NonCoding",4.17,4.25,4.24,4.49,4.67,4.49]
["TC1100001611.rn.1",6.48,5.59,1.853,"up",0.00473879644679753,0.0101289077245379,"NONMMUG016545","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","-","MTA_TR1600002384.mm","Noncoding",62139183,62141991,30,null,"NA","MTA_TR1600002384.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",6.34,6.36,6.74,5.24,5.64,5.9]
["TC1100000569.rn.1",4.88,4.21,1.591,"up",0.00476136114627336,0.0101646312488527,"NONMMUG016614","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","+","MTA_TR1600005744.mm","Noncoding",57443091,57445493,30,null,"NA","MTA_TR1600005744.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",4.76,5.17,4.7,4.05,4.15,4.42]
["TC1900000877.rn.1",4.75,5.68,-1.905,"down",0.00480201316318223,0.0102287885539716,"NONMMUG041956","Non-coding transcript identified by NONCODE: Linc","chr19","+","MTA_TR0800005215.mm","Noncoding",59306847,59308067,30,null,"NA","MTA_TR0800005215.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr19",100,100,{"$nulls":24},"NonCoding",4.73,4.71,4.81,5.64,5.29,6.11]
["TC0300000515.rn.1",4.41,3.82,1.505,"up",0.00480629190895517,0.0102328835335777,"deechy","Unannotated AceView Transcript","chr3","+","deechy.aSep08","Noncoding",30007804,30015429,60,null,"NA","deechy.aSep08","Ace View","Unannotated AceView Transcript","chr3",100,100,{"$nulls":24},"NonCoding",4.42,4.4,4.42,3.72,3.77,3.96]
["TC1400001589.rn.1",5.64,7.5,-3.63,"down",0.0048257240056701,0.0102579113683915,"NONMMUG032878","Non-coding transcript identified by NONCODE: Linc","chr14","-","MTA_TR0500002654.mm","Noncoding",28360672,28361667,30,null,"NA","MTA_TR0500002654.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",5.4,5.74,5.79,7.3,7.89,7.3]
["TC0900002054.rn.1",7.24,6.69,1.464,"up",0.0048276112921364,0.0102606675340391,null,null,"chr9","-",null,"Pseudogene",66712613,66712874,30,null,"NA","ENSRNOT00000025907","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:66515715:66515976:-1 gene:ENSRNOG00000019107 gene_biotype:pseudogene transcript_biotype:pseudogene","chr9",100,100,{"$nulls":24},"Pseudogene",7.26,7.3,7.17,6.7,6.81,6.57]
["TC1200000345.rn.1",3.97,3.53,1.357,"up",0.00484796655909418,0.0102877658426431,"LOC102553419","uncharacterized LOC102553419","chr12","+","mRNARGD7752668_1","Noncoding",20320585,20341449,57,null,"NA","mRNARGD7752668_1","Rat Genome Database","uncharacterized LOC102553419","chr12",100,100,{"$nulls":24},"NonCoding",4.16,4.02,3.72,3.54,3.47,3.59]
["TC0100003043.rn.1",4.43,4.01,1.338,"up",0.00485734860102128,0.010304958787047,null,null,"chr1","+",null,"Pseudogene",220610638,220611492,30,null,"NA","ENSRNOT00000027660","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:227541602:227542456:1 gene:ENSRNOG00000020409 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",4.39,4.43,4.47,4.02,4.1,3.91]
["TC0700001789.rn.1",5.68,6.12,-1.357,"down",0.00489499633453273,0.010343143331367,"jerty","Unannotated AceView Transcript","chr7","+","jerty.aSep08-unspliced","Noncoding",140483029,140485255,30,null,"NA","jerty.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr7",100,100,{"$nulls":24},"NonCoding",5.71,5.72,5.62,6.04,5.97,6.35]
["TC0700003107.rn.1",7.44,5.97,2.77,"up",0.0049161117426032,0.0103575229934215,"NONMMUG014493","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004483.mm","Noncoding",90174164,90176182,30,null,"NA","MTA_TR1500004483.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",7.02,7.51,7.78,5.56,5.79,6.55]
["TC1500001083.rn.1",3.82,3.44,1.301,"up",0.00494237510840392,0.0103977229027594,"LOC102547891","uncharacterized LOC102547891","chr15","+","mRNARGD7513819_1","Noncoding",99329700,99381572,29,null,"NA","mRNARGD7513819_1","Rat Genome Database","uncharacterized LOC102547891","chr15",100,100,{"$nulls":24},"NonCoding",3.73,3.92,3.82,3.63,3.3,3.4]
["TC1200001405.rn.1",16.18,15.64,1.454,"up",0.00499132996806955,0.0104538462279783,null,null,"chr12","-",null,"Pseudogene",25767630,25770912,30,null,"NA","ENSRNOT00000075096","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:27775138:27778420:-1 gene:ENSRNOG00000047163 gene_biotype:pseudogene transcript_biotype:pseudogene","chr12",100,100,{"$nulls":24},"Pseudogene",16.06,16.49,15.98,15.63,15.78,15.5]
["TC0300001435.rn.1",3.68,4.1,-1.338,"down",0.00500738921468466,0.0104761361012028,"LOC691608","hypothetical protein LOC691608","chr3","+","LOC691608.aSep08","Noncoding",105470970,105523875,203,null,"NA","LOC691608.aSep08","Ace View","hypothetical protein LOC691608","chr3",100,100,{"$nulls":24},"NonCoding",3.74,3.62,3.68,4.2,4.23,3.88]
["TC1300000250.rn.1",4.04,3.34,1.625,"up",0.00501121428065913,0.0104803519467048,"LOC102556153","uncharacterized LOC102556153","chr13","+","mRNARGD7736959_1","Noncoding",48774630,48789528,30,null,"NA","mRNARGD7736959_1","Rat Genome Database","uncharacterized LOC102556153","chr13",100,100,{"$nulls":24},"NonCoding",3.95,4.47,3.7,3.44,3.2,3.37]
["TC0600001691.rn.1",5.95,7.11,-2.235,"down",0.00506855255276243,0.0105697270581076,"NONMMUG010136","Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1200003829.mm","Noncoding",145133738,145136532,30,null,"NA","MTA_TR1200003829.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",5.87,5.97,6,7.48,7.25,6.6]
["TC0100000971.rn.1",13.42,12.17,2.378,"up",0.00507149869267215,0.0105724130707881,"NONMMUG037344","Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR0700000852.mm","Noncoding",79772714,79772920,30,null,"NA","MTA_TR0700000852.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",13.11,14.1,13.06,12.17,11.89,12.44]
["TC0500003756.rn.1",6.23,4.69,2.908,"up",0.00509247687956577,0.0105981637409979,"LOC102548282","uncharacterized LOC102548282","chr5","-","mRNARGD7539558_1","Noncoding",150796991,150803119,30,null,"NA","mRNARGD7539558_1","Rat Genome Database","uncharacterized LOC102548282","chr5",100,100,{"$nulls":24},"NonCoding",5.88,6.02,6.79,5.23,4.58,4.25]
["TC0200003714.rn.1",5.1,6.32,-2.329,"down",0.00509973266907926,0.0106080057711143,"NONMMUG026660","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300006519.mm","Noncoding",145547658,145550041,30,null,"NA","MTA_TR0300006519.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.09,5.15,5.07,6.01,5.97,6.98]
["TC0800000038.rn.1",4.57,5.09,-1.434,"down",0.00513683984500266,0.0106609372697182,"KnowTID_00007404","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900000125.mm","Noncoding",5463694,5469134,40,null,"NA","MTA_TR0900000125.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",4.78,4.39,4.53,5.09,5,5.17]
["TC1700001088.rn.1",3.34,3.02,1.248,"up",0.00517698769921143,0.0107186475951134,"NONMMUG022120","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr17","+","MTA_TR0200000671.mm","Noncoding",85252014,85252843,30,null,"NA","MTA_TR0200000671.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr17",100,100,{"$nulls":24},"NonCoding",3.23,3.37,3.42,3.06,2.92,3.08]
["TC0500001611.rn.1",11.44,10.56,1.84,"up",0.00518408688058563,0.0107245312804001,null,null,"chr5","+",null,"Pseudogene",151033729,151034105,30,null,"NA","ENSRNOT00000007699","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:154701066:154701442:1 gene:ENSRNOG00000005728 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",11.54,11.26,11.53,10.56,10.81,10.3]
["TC1200000897.rn.1",5.22,6.37,-2.219,"down",0.00519605979553688,0.0107414916944271,"NONMMUG034444","Non-coding transcript identified by NONCODE: Antisense","chr12","-","MTA_TR0500013279.mm","Noncoding",543809,545321,30,null,"NA","MTA_TR0500013279.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr12",100,100,{"$nulls":24},"NonCoding",5.63,5,5.04,6.27,6.26,6.59]
["TC0600001535.rn.1",3.88,4.39,-1.424,"down",0.00522428736473637,0.010773425789704,"NONMMUG009974","Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1200003399.mm","Noncoding",133870529,133872411,30,null,"NA","MTA_TR1200003399.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",3.69,3.98,3.98,4.18,4.48,4.5]
["TC0100007232.rn.1",6.57,4.69,3.681,"up",0.00522599756562634,0.010773425789704,"LOC499315","Chalmel, et. al. AceView Annotation LOC499315.aSep08 Testis-expressed Unannotated Transcripts (TUTs)","chr1","-","TCONS_00002938","Noncoding",225202604,225214883,30,null,"NA","TCONS_00002938","Chalmel","Chalmel, et. al. AceView Annotation LOC499315.aSep08 Testis-expressed Unannotated Transcripts (TUTs)","chr1",100,100,{"$nulls":24},"NonCoding",6.45,6.68,6.59,4.69,4.9,4.49]
["TC1900001197.rn.1",4.22,4.76,-1.454,"down",0.00527646977979627,0.0108509005025265,"NONMMUG041091","Non-coding transcript identified by NONCODE: Antisense","chr19","-","MTA_TR0800007955.mm","Noncoding",25693391,25699176,30,null,"NA","MTA_TR0800007955.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr19",100,100,{"$nulls":24},"NonCoding",4.31,4.34,4.02,4.82,4.53,4.92]
["TC0700001287.rn.1",9.28,8.62,1.58,"up",0.00529409425288851,0.0108755571507718,"LOC100910183","60S ribosomal protein L29-like","chr7","+","mRNARGD6499820_1","Pseudogene",115876297,115876765,30,null,"NA","mRNARGD6499820_1","Rat Genome Database","60S ribosomal protein L29-like","chr7",100,100,{"$nulls":24},"Pseudogene",9.25,9.17,9.41,8.76,8.76,8.33]
["TC1200001715.rn.1",16.9,16,1.866,"up",0.00532808319419872,0.0109293920106539,null,null,"chr12","-",null,"Noncoding",45372539,45372836,30,null,"NA","NONRATT016030","NONCODE","Non-coding transcript identified by NONCODE","chr12",100,100,{"$nulls":24},"NonCoding",16.64,17.5,16.56,16.01,15.98,16]
["TC2000001569.rn.1",12.13,11.5,1.548,"up",0.00532812501140691,0.0109293920106539,null,null,"chr20","-",null,"Pseudogene",32369024,32369499,30,null,"NA","ENSRNOT00000072145","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:34152930:34153405:-1 gene:ENSRNOG00000050644 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",12.35,12.15,11.88,11.5,11.76,11.25]
["TC1500000018.rn.1",10.64,12.68,-4.112,"down",0.00537453101763264,0.0109849368522528,"LOC100909586","calcium/calmodulin-dependent protein kinase type II subunit gamma-like","chr15","+","mRNARGD6503132_1","Noncoding",2548246,2549711,40,null,"NA","mRNARGD6503132_1","Rat Genome Database","calcium/calmodulin-dependent protein kinase type II subunit gamma-like","chr15",100,100,{"$nulls":24},"NonCoding",10.85,10.39,10.67,12.41,12.97,12.67]
["TC0600003010.rn.1",5.08,4.3,1.717,"up",0.00538808151964317,0.0110062619874557,"NONMMUG009744","Non-coding transcript identified by NONCODE: Linc","chr6","-","MTA_TR1200006197.mm","Noncoding",123562031,123566298,30,null,"NA","MTA_TR1200006197.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",4.85,5.23,5.16,3.98,4.2,4.73]
["TC1400000972.rn.1",3.5,4.36,-1.815,"down",0.00541436144544336,0.0110186164041052,"NONMMUG005278","Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR1100000461.mm","Noncoding",87431796,87432773,30,null,"NA","MTA_TR1100000461.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",3.73,3.71,3.07,4.63,4.39,4.05]
["TC1800001372.rn.1",3.34,3.76,-1.338,"down",0.0054177237541291,0.0110186164041052,"NONMMUG019841","Non-coding transcript identified by NONCODE: Linc","chr18","-","MTA_TR1800003981.mm","Noncoding",39333270,39334550,30,null,"NA","MTA_TR1800003981.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",3.4,3.23,3.39,3.73,3.98,3.57]
["TC0100006064.rn.1",15.45,14.28,2.25,"up",0.00544285900518363,0.0110362908578318,null,null,"chr1","-",null,"Pseudogene",160333768,160338731,40,null,"NA","ENSRNOT00000073704","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:166554856:166559819:-1 gene:ENSRNOG00000045564 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",15.25,16.1,15,14.06,14.13,14.64]
["TC0700002679.rn.1",5.87,7.17,-2.462,"down",0.00544856557531182,0.0110401297805601,"KnowTID_00001059","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1000009071.mm","Noncoding",52732182,52735644,30,null,"NA","MTA_TR1000009071.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",5.78,5.64,6.19,6.74,6.8,7.97]
["TC1100000886.rn.1",5.31,3.99,2.497,"up",0.00547593372964599,0.0110762045665674,"LOC102551949","uncharacterized LOC102551949","chr11","+","mRNARGD7527061_1","Noncoding",81554958,81558110,27,null,"NA","mRNARGD7527061_1","Rat Genome Database","uncharacterized LOC102551949","chr11",100,100,{"$nulls":24},"NonCoding",5.57,5.18,5.18,4.02,4.05,3.89]
["TC0X00000922.rn.1",4.67,5.74,-2.099,"down",0.00550341655809213,0.0111171286840569,"NONMMUG045901","Non-coding transcript identified by NONCODE: Linc","chrX","+","MTA_TR0X00003731.mm","Noncoding",107736114,107737784,30,null,"NA","MTA_TR0X00003731.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",4.25,4.93,4.84,5.72,5.72,5.79]
["TC0400003623.rn.1",7.15,6.16,1.986,"up",0.00550762792263273,0.0111208886021217,null,null,"chr4","-",null,"Pseudogene",150030148,150030534,30,null,"NA","ENSRNOT00000056335","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:215957948:215958334:-1 gene:ENSRNOG00000037266 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",6.95,6.94,7.55,6.13,6.21,6.15]
["TC0300002432.rn.1",8.2,7.36,1.79,"up",0.00551138612487536,0.0111245977661178,null,null,"chr3","+",null,"Pseudogene",167346080,167346629,30,null,"NA","ENSRNOT00000037563","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:173452899:173453448:1 gene:ENSRNOG00000050391 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",8.43,8.1,8.08,7.73,7.21,7.15]
["TC1000002527.rn.1",4.75,3.5,2.378,"up",0.005537819570986,0.0111546224220313,"NONMMUG005746","Non-coding transcript identified by NONCODE: Antisense,Sense No Exonic","chr10","-","MTA_TR1100009544.mm","Noncoding",19358619,19359511,30,null,"NA","MTA_TR1100009544.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense,Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",4.63,4.52,5.09,3.45,3.75,3.3]
["TC0100001854.rn.1",10.51,11.36,-1.803,"down",0.00555112574864527,0.0111710617909774,null,null,"chr1","+",null,"Pseudogene",141929038,141929410,30,null,"NA","ENSRNOT00000071156","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:142884062:142884434:1 gene:ENSRNOG00000048153 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",10.75,9.98,10.79,11.45,11.46,11.18]
["TC0300004493.rn.1",6.19,5.22,1.959,"up",0.00560099394944635,0.0112353494194892,"NONMMUG025129","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200017292.mm","Noncoding",148290830,148293620,30,null,"NA","MTA_TR0200017292.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.71,6.28,6.57,4.89,5.33,5.45]
["TC0100000457.rn.1",16.37,15.18,2.282,"up",0.00562427099901321,0.0112647540094383,null,null,"chr1","+",null,"Noncoding",44537309,44537883,30,null,"NA","NONRATT000308","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",16.08,16.98,16.06,14.95,15.06,15.54]
["TC1200001165.rn.1",5.34,4.49,1.803,"up",0.00563379073442218,0.0112786192056757,"LOC102547234","uncharacterized LOC102547234","chr12","-","mRNARGD7598304_1","Noncoding",15657839,15683417,100,null,"NA","mRNARGD7598304_1","Rat Genome Database","uncharacterized LOC102547234","chr12",100,100,{"$nulls":24},"NonCoding",5.37,5.07,5.57,4.36,4.64,4.47]
["TC0100005812.rn.1",13.85,13.25,1.516,"up",0.00563538586482043,0.011280512544111,"ENSMUSG00000062477","high mobility group box 1-like","chr1","-","MTA_TR0600010888.mm","Pseudogene",137912934,137913673,30,null,"NA","MTA_TR0600010888.mm","MTA2Rn6","high mobility group box 1-like","chr1",100,100,{"$nulls":24},"Pseudogene",14.01,13.97,13.56,13.14,13.18,13.43]
["TC0700001217.rn.1",7.42,8.1,-1.602,"down",0.0056829551517045,0.0113482715185951,"NCBI_Gene:100861767","PREDICTED:  uncharacterized LOC100861767 (LOC100861767), miscRNA.","chr7","+","MTA_TR1500001285.mm","Noncoding",104516391,104528628,30,null,"NA","MTA_TR1500001285.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861767 (LOC100861767), miscRNA.","chr7",100,100,{"$nulls":24},"NonCoding",7.47,7.18,7.62,7.89,8.29,8.11]
["TC0800000868.rn.1",14.28,13.09,2.282,"up",0.00568854764446563,0.0113568280809117,null,null,"chr8","+",null,"Noncoding",66082606,66083177,30,null,"NA","NONRATT053441","NONCODE","Non-coding transcript identified by NONCODE","chr8",100,100,{"$nulls":24},"NonCoding",14.04,14.85,13.95,12.92,12.92,13.43]
["TC0700001538.rn.1",3.99,4.45,-1.376,"down",0.00574973195871707,0.0114316806518112,"NONMMUG015075","Non-coding transcript identified by NONCODE: Antisense","chr7","+","MTA_TR1500002330.mm","Noncoding",123710687,123719281,30,null,"NA","MTA_TR1500002330.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",4.03,3.92,4.02,4.42,4.61,4.31]
["TC0100003577.rn.1",5.12,4.56,1.474,"up",0.00577585382863524,0.0114717993205148,"NONMMUG021317","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR1900001977.mm","Noncoding",257557458,257560529,30,null,"NA","MTA_TR1900001977.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",5.03,5.07,5.25,4.45,4.68,4.55]
["TC1000002551.rn.1",4.47,3.92,1.464,"up",0.00578670723917412,0.0114850337361536,"LOC102550605","uncharacterized LOC102550605","chr10","-","mRNARGD7529424_1","Noncoding",20810138,20813480,30,null,"NA","mRNARGD7529424_1","Rat Genome Database","uncharacterized LOC102550605","chr10",100,100,{"$nulls":24},"NonCoding",4.36,4.69,4.35,3.76,3.8,4.19]
["TC0100000490.rn.1",3.13,3.78,-1.569,"down",0.00579836424584845,0.0115020424020365,"KnowTID_00003412","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR1700000166.mm","Noncoding",47149552,47152788,30,null,"NA","MTA_TR1700000166.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",3.35,3.03,3,3.56,3.63,4.14]
["TC0800001052.rn.1",5.67,4.67,2,"up",0.00582715030792285,0.0115446427918485,"NONMMUG043256","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","+","MTA_TR0900002954.mm","Noncoding",77178325,77179796,30,null,"NA","MTA_TR0900002954.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",5.41,6.11,5.5,4.47,4.53,5.01]
["TC1100001214.rn.1",3.24,2.96,1.214,"up",0.00583545356834872,0.0115558212421096,"NONMMUG017058","Non-coding transcript identified by NONCODE: Linc","chr11","-","MTA_TR1600006522.mm","Noncoding",25700417,25702804,30,null,"NA","MTA_TR1600006522.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",3.28,3.3,3.15,3.03,3.01,2.85]
["TC1600001637.rn.1",8.47,7.49,1.972,"up",0.00586112895700819,0.0115894901664416,"NONMMUG027841","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr16","-","MTA_TR0300009653.mm","Noncoding",48450675,48451073,30,null,"NA","MTA_TR0300009653.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr16",100,100,{"$nulls":24},"NonCoding",8.52,8.42,8.48,7.41,7.76,7.3]
["TC0200003305.rn.1",5.23,3.66,2.969,"up",0.00587250166993638,0.0116053727540916,"KnowTID_00004634","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300000048.mm","Noncoding",97760762,97761882,30,null,"NA","MTA_TR0300000048.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",5.2,5.62,4.87,3.52,3.59,3.88]
["TC0500000818.rn.1",9.16,9.74,-1.495,"down",0.00588232408629867,0.0116168544455541,null,null,"chr5","+",null,"Pseudogene",88199783,88200263,30,null,"NA","ENSRNOT00000072126","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:92276448:92276928:1 gene:ENSRNOG00000048774 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",9.19,9.22,9.06,10.04,9.49,9.68]
["TC0900001831.rn.1",11.61,10.76,1.803,"up",0.00592482714141705,0.0116663083511172,"LOC102554557","uncharacterized LOC102554557","chr9","-","mRNARGD7677181_1","Noncoding",43500436,43502170,30,null,"NA","mRNARGD7677181_1","Rat Genome Database","uncharacterized LOC102554557","chr9",100,100,{"$nulls":24},"NonCoding",11.71,11.49,11.63,10.68,10.7,10.91]
["TC2000001647.rn.1",4.75,4.27,1.395,"up",0.00594812966495331,0.0116949587334356,"LOC102555751","uncharacterized LOC102555751","chr20","-","mRNARGD7511832_1","Noncoding",42750779,42769810,140,null,"NA","mRNARGD7511832_1","Rat Genome Database","uncharacterized LOC102555751","chr20",100,100,{"$nulls":24},"NonCoding",4.75,4.75,4.75,4.36,4.11,4.34]
["TC0800001670.rn.1",8.75,7.92,1.778,"up",0.00596329260535488,0.0117062217027483,"NCBI_Gene:100862039","PREDICTED:  uncharacterized LOC100862039 (LOC100862039), miscRNA.","chr8","+","MTA_TR0900004992.mm","Noncoding",123302534,123306434,30,null,"NA","MTA_TR0900004992.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862039 (LOC100862039), miscRNA.","chr8",100,100,{"$nulls":24},"NonCoding",8.92,8.32,9.01,7.97,8.05,7.74]
["TC0800002201.rn.1",7.81,8.39,-1.495,"down",0.00599165332792605,0.0117383587061947,null,null,"chr8","-",null,"Pseudogene",34326475,34327468,30,null,"NA","ENSRNOT00000034904","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:34367721:34368714:-1 gene:ENSRNOG00000022108 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",7.99,7.99,7.45,8.29,8.56,8.32]
["TC1300001473.rn.1",6.06,5.38,1.602,"up",0.00600093182825889,0.0117482460034583,"NONMMUG001856","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","-","MTA_TR0100009977.mm","Noncoding",52350295,52352814,30,null,"NA","MTA_TR0100009977.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",5.72,6.28,6.19,5.42,5.1,5.61]
["TC0300001309.rn.1",7.47,6.55,1.892,"up",0.00602883419268208,0.0117856041819807,"NONMMUG024033","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200005013.mm","Noncoding",94563236,94565243,30,null,"NA","MTA_TR0200005013.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",7.37,7.38,7.66,6.3,6.49,6.85]
["TC0300002333.rn.1",6.44,5.28,2.235,"up",0.00606908752058181,0.0118323366240209,"NONMMUG025510","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200008832.mm","Noncoding",162704337,162706401,30,null,"NA","MTA_TR0200008832.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.81,6.8,6.71,5.28,5.32,5.25]
["TC0X00002643.rn.1",4.28,4.58,-1.231,"down",0.00607662222705206,0.0118390539149986,"NONMMUG045127","Non-coding transcript identified by NONCODE: Antisense","chrX","-","MTA_TR0X00001982.mm","Noncoding",156989308,156993367,30,null,"NA","MTA_TR0X00001982.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chrX",100,100,{"$nulls":24},"NonCoding",4.34,4.36,4.15,4.54,4.53,4.67]
["TC0200003263.rn.1",11.14,10.12,2.028,"up",0.00610776549488462,0.0118810744021994,"NONMMUG026059","Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300000123.mm","Noncoding",93824467,93827002,30,null,"NA","MTA_TR0300000123.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",11.19,11.52,10.71,10.38,9.8,10.18]
["TC0100005653.rn.1",7.27,8.39,-2.173,"down",0.0061236737411512,0.0118973645629725,"LOC102546835","uncharacterized LOC102546835","chr1","-","mRNARGD7697900_1","Noncoding",123159072,123160055,30,null,"NA","mRNARGD7697900_1","Rat Genome Database","uncharacterized LOC102546835","chr1",100,100,{"$nulls":24},"NonCoding",7.06,7.28,7.46,8.11,8.35,8.7]
["TC0100005667.rn.1",4.22,4.66,-1.357,"down",0.00615707955505412,0.0119419279322687,"LOC102548323","uncharacterized LOC102548323","chr1","-","mRNARGD7508569_1","Noncoding",124281002,124311650,50,null,"NA","mRNARGD7508569_1","Rat Genome Database","uncharacterized LOC102548323","chr1",100,100,{"$nulls":24},"NonCoding",4.36,4.33,3.96,4.58,4.61,4.79]
["TC1800001060.rn.1",3.64,4.46,-1.765,"down",0.00617791494279073,0.0119652760030346,"NONMMUG019393","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18","-","MTA_TR1800003214.mm","Noncoding",6478280,6481880,30,null,"NA","MTA_TR1800003214.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18",100,100,{"$nulls":24},"NonCoding",3.53,3.77,3.61,4.73,4.7,3.94]
["TC1700002377.rn.1",7.26,8.06,-1.741,"down",0.0061968702201334,0.011993964634422,"loyfer","Unannotated AceView Transcript","chr17","-","loyfer.aSep08-unspliced","Noncoding",90709196,90711236,70,null,"NA","loyfer.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr17",100,100,{"$nulls":24},"NonCoding",7.17,7.18,7.44,7.84,8.24,8.09]
["TC0800001196.rn.1",5.04,6.93,-3.706,"down",0.00621556231138066,0.0120194292453516,"KnowTID_00007539","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900003471.mm","Noncoding",90361812,90364801,30,null,"NA","MTA_TR0900003471.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",4.98,4.97,5.17,6.02,7.54,7.22]
["TC0600002549.rn.1",17.17,15.88,2.445,"up",0.00625154686122859,0.0120594803471851,null,null,"chr6","-",null,"Noncoding",81209176,81209737,30,null,"NA","NONRATT048175","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",16.95,17.7,16.87,15.51,15.64,16.48]
["TC0400000483.rn.1",15.85,15.13,1.647,"up",0.00628359227381623,0.0121038236181483,null,null,"chr4","+",null,"Pseudogene",51743859,51747136,30,null,"NA","ENSRNOT00000075123","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:51522115:51525392:1 gene:ENSRNOG00000047729 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",15.64,16.26,15.64,15.09,15.25,15.05]
["TC2000001233.rn.1",7.81,7.16,1.569,"up",0.00632723179278099,0.012174384522862,"LOC288777","similar to 40S ribosomal protein S15 (RIG protein)","chr20","-","LOC288777.aSep08-unspliced","Pseudogene",8499988,8500498,30,null,"NA","LOC288777.aSep08-unspliced","Ace View","similar to 40S ribosomal protein S15 (RIG protein)","chr20",100,100,{"$nulls":24},"Pseudogene",8.18,7.77,7.49,7.26,7.25,6.96]
["TC1200000720.rn.1",3.12,3.78,-1.58,"down",0.00635871079428473,0.0122174471145297,"LOC102553129","uncharacterized LOC102553129","chr12","+","mRNARGD7564909_1","Noncoding",43753404,43756584,30,null,"NA","mRNARGD7564909_1","Rat Genome Database","uncharacterized LOC102553129","chr12",100,100,{"$nulls":24},"NonCoding",3.11,3.16,3.09,4.23,3.57,3.53]
["TC0100000095.rn.1",5.65,6.79,-2.204,"down",0.00638014394495641,0.0122463514329103,"NONMMUG003078","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR1000000383.mm","Noncoding",8141917,8144715,30,null,"NA","MTA_TR1000000383.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",5.23,5.94,5.78,6.29,6.64,7.45]
["TC1100000112.rn.1",7.54,6.36,2.266,"up",0.00644643289304931,0.012332614122108,"KnowTID_00003193","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003026.mm","Noncoding",16107589,16108487,30,null,"NA","MTA_TR1600003026.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",7.41,7.69,7.52,6.15,6.13,6.8]
["TC0500001420.rn.1",6.8,8.39,-3.01,"down",0.00644687456086327,0.012332614122108,"LOC102554352","uncharacterized LOC102554352","chr5","+","mRNARGD7598727_1","Noncoding",142153708,142206025,30,null,"NA","mRNARGD7598727_1","Rat Genome Database","uncharacterized LOC102554352","chr5",100,100,{"$nulls":24},"NonCoding",6.46,7.1,6.84,8.47,8.35,8.34]
["TC0800000535.rn.1",4.6,5.07,-1.385,"down",0.00648499305304988,0.0123747559860976,"byru","Unannotated AceView Transcript","chr8","+","byru.aSep08-unspliced","Noncoding",47251686,47258785,40,null,"NA","byru.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr8",100,100,{"$nulls":24},"NonCoding",4.71,4.37,4.71,4.91,5.28,5.02]
["TC1700002336.rn.1",8.98,9.5,-1.434,"down",0.00656105353431275,0.012456250240795,null,null,"chr17","-",null,"Pseudogene",87506499,87507503,30,null,"NA","ENSRNOT00000044986","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:89197447:89198451:-1 gene:ENSRNOG00000033951 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",9.02,9.08,8.83,9.55,9.64,9.3]
["TC1700001512.rn.1",13.94,13.13,1.753,"up",0.00660976515174988,0.0125211956588182,null,null,"chr17","-",null,"Pseudogene",20800634,20803878,30,null,"NA","ENSRNOT00000073619","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:22794503:22797747:-1 gene:ENSRNOG00000047451 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",13.83,14.44,13.55,13.09,13.26,13.04]
["TC0400003421.rn.1",5.64,4.9,1.67,"up",0.00662474256865598,0.0125357737647193,"NONMMUG036105","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600009210.mm","Noncoding",129836766,129837273,30,null,"NA","MTA_TR0600009210.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",5.53,5.54,5.85,4.95,4.6,5.14]
["TC0200000251.rn.1",3.83,3.53,1.231,"up",0.00666474428035684,0.0125922637474525,"KnowTID_00001921","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1300003094.mm","Noncoding",29334940,29340564,30,null,"NA","MTA_TR1300003094.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",3.73,3.88,3.89,3.48,3.46,3.64]
["TC2000001352.rn.1",4,4.29,-1.223,"down",0.00667195507400123,0.0126004056958551,"uc007fsl.2","piRNA piR-1551, complete sequence.","chr20","-","MTA_TR1000002277.mm","Noncoding",13735764,13735932,30,null,"NA","MTA_TR1000002277.mm","MTA2Rn6","piRNA piR-1551, complete sequence.","chr20",100,100,{"$nulls":24},"NonCoding",3.91,4.11,3.98,4.29,4.18,4.39]
["TC0300002899.rn.1",5.61,5.31,1.231,"up",0.00669377518362903,0.0126251431829338,"NONMMUG022635","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr3","-","MTA_TR0200011964.mm","Noncoding",12596470,12598483,30,null,"NA","MTA_TR0200011964.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr3",100,100,{"$nulls":24},"NonCoding",5.6,5.6,5.63,5.33,5.33,5.26]
["TC1700001985.rn.1",9.97,9.11,1.815,"up",0.00672074897504734,0.0126567791029431,null,null,"chr17","-",null,"Pseudogene",59803965,59804444,30,null,"NA","ENSRNOT00000025854","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:61593234:61593713:-1 gene:ENSRNOG00000019131 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",10.19,9.83,9.9,9.11,9.45,8.78]
["TC0600001567.rn.1",8.31,7.55,1.693,"up",0.00678916199496264,0.0127386620236008,null,null,"chr6","+",null,"Pseudogene",135058873,135059194,30,null,"NA","ENSRNOT00000072010","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:144196044:144196365:1 gene:ENSRNOG00000050633 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",8.59,8.14,8.19,7.44,7.97,7.24]
["TC0700001906.rn.1",4.47,4.1,1.292,"up",0.0068057228699581,0.0127544190194212,"NONMMUG015555","Non-coding transcript identified by NONCODE: Antisense","chr7","+","MTA_TR1500003466.mm","Noncoding",144163228,144164020,30,null,"NA","MTA_TR1500003466.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",4.53,4.32,4.55,3.95,4.08,4.26]
["TC1700001877.rn.1",3.62,3.27,1.275,"up",0.00684681086554163,0.0127874370008949,"LOC102553497","uncharacterized LOC102553497","chr17","-","mRNARGD7591905_1","Noncoding",47905510,47911438,30,null,"NA","mRNARGD7591905_1","Rat Genome Database","uncharacterized LOC102553497","chr17",100,100,{"$nulls":24},"NonCoding",3.6,3.83,3.44,3.33,3.24,3.23]
["TC0X00001699.rn.1",14.35,12.93,2.676,"up",0.00689635760423823,0.012850957728301,null,null,"chrX","-",null,"Noncoding",38569059,38569635,30,null,"NA","NONRATT059629","NONCODE","Non-coding transcript identified by NONCODE","chrX",100,100,{"$nulls":24},"NonCoding",14.06,15.08,13.9,12.76,12.75,13.28]
["TC0300001357.rn.1",6.19,7.73,-2.908,"down",0.00691839673857111,0.0128726938459425,"KnowTID_00004396","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200005145.mm","Noncoding",98328846,98329984,30,null,"NA","MTA_TR0200005145.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",5.86,6.32,6.38,7.93,7.61,7.64]
["TC0400000963.rn.1",4.08,3.7,1.301,"up",0.00693002405710581,0.0128901860901579,"KnowTID_00006099","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0600002286.mm","Noncoding",85104701,85107034,30,null,"NA","MTA_TR0600002286.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",4.1,4.19,3.94,3.73,3.52,3.85]
["TC1200001379.rn.1",3.94,4.35,-1.329,"down",0.0069576454507987,0.0129142599260754,"uc029rfy.1","non-coding RNA, oocyte_clustered_small_RNA6256, complete sequence.","chr12","-","MTA_TR1000004354.mm","Noncoding",25062135,25063247,30,null,"NA","MTA_TR1000004354.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA6256, complete sequence.","chr12",100,100,{"$nulls":24},"NonCoding",3.87,3.94,4.02,4.58,4.16,4.3]
["TC0600001083.rn.1",6.05,6.67,-1.537,"down",0.00700425021127353,0.0129603618534193,"uc011ymw.2","non-coding RNA, oocyte_clustered_small_RNA8071, complete sequence.","chr6","+","MTA_TR1200001493.mm","Noncoding",103520536,103520671,30,null,"NA","MTA_TR1200001493.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA8071, complete sequence.","chr6",100,100,{"$nulls":24},"NonCoding",6.21,5.74,6.21,6.39,6.82,6.81]
["TC1100000191.rn.1",3.46,3.83,-1.292,"down",0.00701274513734233,0.0129690616183087,"LOC363737","hypothetical LOC363737","chr11","+","mRNARGD6727658_1","Pseudogene",28490275,28491600,30,null,"NA","mRNARGD6727658_1","Rat Genome Database","hypothetical LOC363737","chr11",100,100,{"$nulls":24},"Pseudogene",3.53,3.37,3.47,3.63,3.96,3.9]
["TC0800001519.rn.1",5.87,5.11,1.693,"up",0.00704689262970815,0.0130072863532739,"LOC100360852","PCNA-associated factor-like","chr8","+","mRNARGD6644165_1","Pseudogene",116644049,116644397,30,null,"NA","mRNARGD6644165_1","Rat Genome Database","PCNA-associated factor-like","chr8",100,100,{"$nulls":24},"Pseudogene",6.04,5.81,5.77,5.02,5.34,4.96]
["TC0600000053.rn.1",4.19,4.75,-1.474,"down",0.00706987806188749,0.0130330947482805,"KnowTID_00003545","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1700004501.mm","Noncoding",3722477,3723219,30,null,"NA","MTA_TR1700004501.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",4.01,4.3,4.27,4.68,4.53,5.04]
["TC0100001623.rn.1",6.93,8.32,-2.621,"down",0.00707694648630143,0.0130379109741258,"LOC102552966","uncharacterized LOC102552966","chr1","+","mRNARGD7672749_1","Noncoding",118042957,118077708,49,null,"NA","mRNARGD7672749_1","Rat Genome Database","uncharacterized LOC102552966","chr1",100,100,{"$nulls":24},"NonCoding",7.02,7.13,6.63,8.2,8.4,8.36]
["TC1000001089.rn.1",15.49,14.78,1.636,"up",0.00707920489234776,0.0130392183421666,null,null,"chr10","+",null,"Pseudogene",63077483,63080763,30,null,"NA","ENSRNOT00000073578","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:62776648:62779928:1 gene:ENSRNOG00000050344 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",15.28,15.97,15.21,14.67,14.85,14.83]
["TC1800001277.rn.1",16.32,15.61,1.636,"up",0.00711399120981103,0.0130858064003534,null,null,"chr18","-",null,"Pseudogene",29850576,29853858,30,null,"NA","ENSRNOT00000072965","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:29549760:29553042:-1 gene:ENSRNOG00000045704 gene_biotype:pseudogene transcript_biotype:pseudogene","chr18",100,100,{"$nulls":24},"Pseudogene",16.08,16.78,16.09,15.59,15.66,15.59]
["TC1200001043.rn.1",5.49,4.68,1.753,"up",0.00716274791016257,0.0131457045903258,"NONMMUG034350","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","-","MTA_TR0500006528.mm","Noncoding",9252482,9254329,30,null,"NA","MTA_TR0500006528.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",5.38,5.38,5.71,4.56,4.62,4.85]
["TC0200003063.rn.1",19.09,18.33,1.693,"up",0.00721482964204588,0.0132165141595964,null,null,"chr2","-",null,"Pseudogene",59619213,59619592,30,null,"NA","ENSRNOT00000042354","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:78712198:78712577:-1 gene:ENSRNOG00000029296 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",19.03,19.12,19.11,18.15,18.26,18.57]
["TC0X00002113.rn.1",4.13,3.65,1.395,"up",0.0072562937875891,0.0132683241457063,null,null,"chrX","-",null,"Pseudogene",88282412,88282888,30,null,"NA","ENSRNOT00000072021","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:88205646:88206122:-1 gene:ENSRNOG00000051013 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",4.12,4.35,3.93,3.47,3.66,3.83]
["TC0500001218.rn.1",9.29,9.7,-1.329,"down",0.00728736434773746,0.0133078125914308,"Ank.18","Unannotated AceView Transcript","chr5","+","Ank.18.aSep08-unspliced","Pseudogene",132660521,132663730,90,null,"NA","Ank.18.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr5",100,100,{"$nulls":24},"Pseudogene",9.33,9.25,9.28,9.73,9.64,9.73]
["TC1000000642.rn.1",9.36,8.76,1.516,"up",0.00729569602678761,0.0133111268061527,null,null,"chr10","+",null,"Noncoding",42946487,42947790,30,null,"NA","NONRATT008620","NONCODE","Non-coding transcript identified by NONCODE","chr10",100,100,{"$nulls":24},"NonCoding",9.41,9.38,9.28,8.61,8.86,8.8]
["TC1400000199.rn.1",8.33,8.86,-1.444,"down",0.00729809289630985,0.0133111268061527,null,null,"chr14","+",null,"Pseudogene",12896799,12897798,30,null,"NA","ENSRNOT00000013655","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:12839620:12840619:1 gene:ENSRNOG00000010293 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",8.43,8.44,8.13,8.71,9.18,8.7]
["TC0400001546.rn.1",4.9,6.27,-2.585,"down",0.00732779910474884,0.0133428928981753,"NONMMUG036249","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600004031.mm","Noncoding",142537833,142542214,30,null,"NA","MTA_TR0600004031.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",5.07,4.89,4.74,5.99,5.82,7]
["TC0500002953.rn.1",16.14,15.24,1.866,"up",0.0073312703523821,0.013347814410568,null,null,"chr5","-",null,"Pseudogene",88656771,88662292,30,null,"NA","ENSRNOT00000072346","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:92727913:92733434:-1 gene:ENSRNOG00000050361 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",15.9,16.61,15.9,14.99,15.12,15.61]
["TC1100001560.rn.1",4.78,5.51,-1.659,"down",0.00735653723037284,0.0133657672455675,"NONMMUG016503","Non-coding transcript identified by NONCODE: Linc","chr11","-","MTA_TR1600002299.mm","Noncoding",59861478,59864125,30,null,"NA","MTA_TR1600002299.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",5.04,4.79,4.51,5.4,5.35,5.77]
["TC0400004034.rn.1",5.24,5.83,-1.505,"down",0.00739250081494228,0.0134059016240069,"NCBI_Gene:100862392","PREDICTED:  uncharacterized LOC100862392 (LOC100862392), miscRNA.","chr4","-","MTA_TR0600011269.mm","Noncoding",176994047,177001621,30,null,"NA","MTA_TR0600011269.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862392 (LOC100862392), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",5.36,4.99,5.37,6.02,5.95,5.52]
["TC0600002593.rn.1",13.15,11.45,3.249,"up",0.00741404274309329,0.013429544993772,null,null,"chr6","-",null,"Noncoding",91577095,91578260,30,null,"NA","NONRATT048203","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",12.71,13.81,12.93,11.1,11.24,12]
["TC2000000700.rn.1",8.44,7.87,1.485,"up",0.00742020573490164,0.0134365051413506,"NCBI_Gene:100862011","PREDICTED:  uncharacterized LOC100862011 (LOC100862011), miscRNA.","chr20","+","MTA_TR1000001714.mm","Noncoding",32214897,32215862,30,null,"NA","MTA_TR1000001714.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862011 (LOC100862011), miscRNA.","chr20",100,100,{"$nulls":24},"NonCoding",8.3,8.29,8.73,8,7.72,7.89]
["TC0600002177.rn.1",4.72,4.31,1.329,"up",0.00745098247183185,0.0134711715776635,null,null,"chr6","-",null,"Pseudogene",41729199,41729993,30,null,"NA","ENSRNOT00000036615","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:51465062:51465856:-1 gene:ENSRNOG00000024778 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",4.62,4.92,4.62,4.32,4.3,4.31]
["TC0500003690.rn.1",4.29,4.92,-1.548,"down",0.00746291433108056,0.0134843233664656,"NONMMUG030776","Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400012394.mm","Noncoding",148178091,148180554,30,null,"NA","MTA_TR0400012394.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",4.31,4.49,4.06,4.63,4.91,5.21]
["TC0500002204.rn.1",6.02,5.22,1.741,"up",0.00749432078955313,0.0135255944348392,"NONMMUG000053","Non-coding transcript identified by NONCODE: Exonic","chr5","-","MTA_TR0100000107.mm","Noncoding",12202295,12202925,30,null,"NA","MTA_TR0100000107.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Exonic","chr5",100,100,{"$nulls":24},"NonCoding",6.03,6.25,5.79,5.45,4.93,5.27]
["TC1900001622.rn.1",4.58,3.96,1.537,"up",0.00752376095151541,0.0135604120656541,null,null,"chr19","-",null,"Pseudogene",54872582,54872984,30,null,"NA","ENSRNOT00000030142","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:19:65591770:65592172:-1 gene:ENSRNOG00000028578 gene_biotype:pseudogene transcript_biotype:pseudogene","chr19",100,100,{"$nulls":24},"Pseudogene",4.62,4.72,4.4,3.99,4.28,3.6]
["TC0X00000821.rn.1",4.92,5.83,-1.879,"down",0.00758018763320011,0.0136274695007388,"KnowTID_00007954","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chrX","+","MTA_TR0X00003267.mm","Noncoding",92135423,92137487,30,null,"NA","MTA_TR0X00003267.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",4.86,4.91,5,5.32,6.13,6.03]
["TC1200001830.rn.1",4.39,5.32,-1.905,"down",0.00758633495197672,0.0136353949135944,"NONMMUG033402","Non-coding transcript identified by NONCODE: Linc","chr12","-","MTA_TR0500003974.mm","Noncoding",50456433,50459719,50,null,"NA","MTA_TR0500003974.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr12",100,100,{"$nulls":24},"NonCoding",4.44,4.51,4.22,4.89,5.15,5.93]
["TC1400002235.rn.1",14.75,14.05,1.625,"up",0.00761991366448307,0.0136737940282548,null,null,"chr14","-",null,"Pseudogene",89716091,89719371,30,null,"NA","ENSRNOT00000074568","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:89513317:89516597:-1 gene:ENSRNOG00000049896 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",14.56,15.22,14.46,14.11,14.15,13.88]
["TC1400001093.rn.1",3.47,3.75,-1.214,"down",0.00762679299170066,0.0136808158879422,"NONMMUG005447","Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR1100000704.mm","Noncoding",104976031,104979825,30,null,"NA","MTA_TR1100000704.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",3.54,3.51,3.35,3.7,3.72,3.83]
["TC0300004821.rn.1",4.97,4.48,1.404,"up",0.00764563464165723,0.0136951787778385,"NONMMUG025558","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200018451.mm","Noncoding",164065275,164066772,30,null,"NA","MTA_TR0200018451.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.94,4.93,5.05,4.58,4.17,4.69]
["TC0200003032.rn.1",13.18,12.69,1.404,"up",0.00765352206194345,0.0137061166740226,"ENSMUSG00000097897","ribosomal protein L31. pseudogene 25, ribosomal protein L31, pseudogene 25","chr2","-","MTA_TR1700009495.mm","Pseudogene",56764371,56764734,30,null,"NA","MTA_TR1700009495.mm","MTA2Rn6","ribosomal protein L31. pseudogene 25, ribosomal protein L31, pseudogene 25","chr2",100,100,{"$nulls":24},"Pseudogene",13.45,13.19,12.91,12.73,12.79,12.54]
["TC0200002029.rn.1",4.67,4.16,1.424,"up",0.00769498103715191,0.013753123358558,"NONMMUG027702","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300004030.mm","Noncoding",216972035,216973882,30,null,"NA","MTA_TR0300004030.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",4.45,4.82,4.74,4.01,4.06,4.42]
["TC0100002548.rn.1",7.17,7.57,-1.32,"down",0.00772731307774171,0.013797014644203,null,null,"chr1","+",null,"Pseudogene",193590866,193592436,30,null,"NA","ENSRNOT00000020314","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:200648796:200650366:1 gene:ENSRNOG00000015130 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",7.23,7.23,7.04,7.53,7.65,7.54]
["TC0800001034.rn.1",7.19,6.69,1.414,"up",0.00777893648756926,0.0138528828170164,null,null,"chr8","+",null,"Noncoding",76144750,76145104,30,null,"NA","NONRATT053636","NONCODE","Non-coding transcript identified by NONCODE","chr8",100,100,{"$nulls":24},"NonCoding",7.21,7.01,7.35,6.66,6.79,6.62]
["TC1000000055.rn.1",3.86,3.52,1.266,"up",0.0077793375096422,0.0138528828170164,"NONMMUG015775","Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1600004073.mm","Noncoding",4651216,4653778,40,null,"NA","MTA_TR1600004073.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",3.83,4.05,3.71,3.46,3.5,3.6]
["TC0200000636.rn.1",4.11,5.29,-2.266,"down",0.00779296889520287,0.0138664935621442,"KnowTID_00002681","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1500000426.mm","Noncoding",71412416,71415486,30,null,"NA","MTA_TR1500000426.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.38,3.92,4.02,5.01,4.83,6.02]
["TC0700002383.rn.1",2.73,3.52,-1.729,"down",0.00779371380562019,0.0138664935621442,"uc029ral.1","non-coding RNA, oocyte_clustered_small_RNA1700, complete sequence.","chr7","-","MTA_TR1000003183.mm","Noncoding",26463379,26463417,15,null,"NA","MTA_TR1000003183.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA1700, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",2.66,2.66,2.87,3.27,3.41,3.89]
["TC1200001158.rn.1",5.51,4.53,1.972,"up",0.00780381529906143,0.0138779766134312,"NONMMUG034192","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","-","MTA_TR0500006122.mm","Noncoding",15352552,15354617,30,null,"NA","MTA_TR0500006122.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",5.33,5.35,5.85,4.42,4.52,4.64]
["TC1900001025.rn.1",7.21,7.7,-1.404,"down",0.00783829699442401,0.0139122363431225,"NCBI_Gene:100861639","PREDICTED:  uncharacterized LOC100861639 (LOC100861639), miscRNA.","chr19","-","MTA_TR0800003494.mm","Noncoding",11508363,11509506,30,null,"NA","MTA_TR0800003494.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861639 (LOC100861639), miscRNA.","chr19",100,100,{"$nulls":24},"NonCoding",7.44,7.13,7.07,7.52,7.84,7.74]
["TC0700003710.rn.1",5.45,6.98,-2.888,"down",0.00786566726655434,0.0139406675405297,"KnowTID_00003016","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1500006488.mm","Noncoding",130763721,130765914,30,null,"NA","MTA_TR1500006488.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",5.31,5.51,5.53,6.39,7.38,7.16]
["TC0800000179.rn.1",11.36,12.68,-2.497,"down",0.00787633428511054,0.0139508401412098,"LOC300429","similar to Calcineurin subunit B isoform 1 (Protein phosphatase 2B regulatory subunit 1) (Protein phosphatase 3 regulatory subunit B alpha isoform 1)","chr8","+","mRNARGD6582030_1","Pseudogene",20619905,20620430,30,null,"NA","mRNARGD6582030_1","Rat Genome Database","similar to Calcineurin subunit B isoform 1 (Protein phosphatase 2B regulatory subunit 1) (Protein phosphatase 3 regulatory subunit B alpha isoform 1)","chr8",100,100,{"$nulls":24},"Pseudogene",11.7,11.34,11.03,12.36,12.86,12.81]
["TC1100000011.rn.1",6,5.7,1.231,"up",0.00788197574808983,0.0139555397737303,"NONMMUG016824","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600002853.mm","Noncoding",2802138,2808386,30,null,"NA","MTA_TR1600002853.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",6.13,5.89,5.97,5.64,5.76,5.69]
["TC0600001072.rn.1",7.3,8.16,-1.815,"down",0.00789158847356867,0.0139654424790507,"uc029rsx.1","non-coding RNA, oocyte_clustered_small_RNA7169, complete sequence.","chr6","+","MTA_TR1200001483.mm","Noncoding",103518280,103518306,3,null,"NA","MTA_TR1200001483.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA7169, complete sequence.","chr6",100,100,{"$nulls":24},"NonCoding",7.4,7.18,7.32,7.97,8.03,8.47]
["TC0600000148.rn.1",6.8,6.33,1.385,"up",0.00793032856080754,0.0140168638003447,null,null,"chr6","+",null,"Pseudogene",10529075,10529882,30,null,"NA","ENSRNOT00000020833","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:20517592:20518399:1 gene:ENSRNOG00000015559 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",6.65,6.85,6.91,6.18,6.39,6.41]
["TC0300001236.rn.1",3.86,4.5,-1.558,"down",0.00794085508989715,0.0140304152819144,"NONMMUG023913","Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200004791.mm","Noncoding",86307469,86309506,30,null,"NA","MTA_TR0200004791.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",3.98,3.77,3.82,4.26,4.29,4.94]
["TC1800000172.rn.1",3.89,4.57,-1.602,"down",0.00794364943282642,0.0140304152819144,"NONMMUG019509","Non-coding transcript identified by NONCODE: Antisense","chr18","+","MTA_TR1800000556.mm","Noncoding",17337648,17341613,30,null,"NA","MTA_TR1800000556.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr18",100,100,{"$nulls":24},"NonCoding",3.92,3.97,3.78,4.21,4.55,4.96]
["TC0100003184.rn.1",3.45,3,1.366,"up",0.00795866642792522,0.0140448642220068,"NONMMUG020800","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr1","+","MTA_TR1900000947.mm","Noncoding",226089191,226090453,30,null,"NA","MTA_TR1900000947.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr1",100,100,{"$nulls":24},"NonCoding",3.75,3.3,3.31,3.08,3.01,2.91]
["TC0200004004.rn.1",8.47,7.68,1.729,"up",0.00799687531213325,0.014085755531035,"LOC102556169","uncharacterized LOC102556169","chr2","-","mRNARGD7697828_1","Noncoding",186745280,186746495,30,null,"NA","mRNARGD7697828_1","Rat Genome Database","uncharacterized LOC102556169","chr2",100,100,{"$nulls":24},"NonCoding",8.42,8.84,8.15,7.77,7.35,7.93]
["TC0200003661.rn.1",4.58,3.98,1.516,"up",0.0080082076830061,0.0140945055518321,"NONMMUG026564","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300006405.mm","Noncoding",141159712,141161866,30,null,"NA","MTA_TR0300006405.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",4.56,4.42,4.76,3.72,3.96,4.27]
["TC1000002528.rn.1",5.19,3.98,2.313,"up",0.00807931023393106,0.0141877980260429,"NONMMUG005747","Non-coding transcript identified by NONCODE: Antisense,Sense No Exonic","chr10","-","MTA_TR1100009545.mm","Noncoding",19373243,19376656,30,null,"NA","MTA_TR1100009545.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense,Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",4.91,4.76,5.89,4.4,3.81,3.74]
["TC1300000463.rn.1",5.95,5.41,1.454,"up",0.00809149392893728,0.0142006295548519,"RGD1565977","Unannotated AceView Transcript","chr13","+","keykoy.aSep08-unspliced","Pseudogene",68865082,68866657,40,null,"NA","keykoy.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr13",100,100,{"$nulls":24},"Pseudogene",6,5.93,5.93,5.38,5.69,5.15]
["TC1800001242.rn.1",7.49,6.91,1.495,"up",0.00814631243526175,0.0142679565752099,"NCBI_Gene:100861752","PREDICTED:  uncharacterized LOC100861752 (LOC100861752), miscRNA.","chr18","-","MTA_TR1800003626.mm","Noncoding",28041047,28055970,30,null,"NA","MTA_TR1800003626.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861752 (LOC100861752), miscRNA.","chr18",100,100,{"$nulls":24},"NonCoding",7.37,7.5,7.59,7.03,6.81,6.9]
["TC0300001846.rn.1",3.7,4.19,-1.404,"down",0.00815236551412298,0.0142742406356043,"NONMMUG024876","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200007083.mm","Noncoding",134561102,134565507,30,null,"NA","MTA_TR0200007083.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",3.73,3.76,3.62,3.96,4.14,4.47]
["TC1800000212.rn.1",7.63,9.64,-4.028,"down",0.00816552723493192,0.0142886444643903,"ENSMUSG00000096934","predicted gene, 26658, Non-coding transcript identified by NONCODE: Antisense","chr18","+","MTA_TR1800000618.mm","Noncoding",24175076,24183672,30,null,"NA","MTA_TR1800000618.mm","MTA2Rn6","predicted gene, 26658, Non-coding transcript identified by NONCODE: Antisense","chr18",100,100,{"$nulls":24},"NonCoding",7.61,7.56,7.73,9.6,9.62,9.69]
["TC0800003525.rn.1",12.46,11.48,1.972,"up",0.00817034260302592,0.0142905502064416,"LOC102552576","uncharacterized LOC102552576","chr8","-","mRNARGD7537455_1","Noncoding",126881662,126885003,30,null,"NA","mRNARGD7537455_1","Rat Genome Database","uncharacterized LOC102552576","chr8",100,100,{"$nulls":24},"NonCoding",12.47,13,11.91,11.27,11.35,11.83]
["TC0100001027.rn.1",5.39,5.7,-1.24,"down",0.00817373279866773,0.0142929245465731,"LOC680714","hypothetical protein LOC680714","chr1","+","LOC680714.aSep08-unspliced","Pseudogene",80981924,80984233,30,null,"NA","LOC680714.aSep08-unspliced","Ace View","hypothetical protein LOC680714","chr1",100,100,{"$nulls":24},"Pseudogene",5.37,5.48,5.32,5.59,5.8,5.7]
["TC0300003525.rn.1",16.01,15.21,1.741,"up",0.00818078593067714,0.0143023784623382,null,null,"chr3","-",null,"Noncoding",75450044,75450960,30,null,"NA","NONRATT037510","NONCODE","Non-coding transcript identified by NONCODE","chr3",100,100,{"$nulls":24},"NonCoding",15.81,16.41,15.8,15.12,14.95,15.56]
["TC0100000215.rn.1",4.3,4.95,-1.569,"down",0.00820671144279857,0.0143231974754199,"LOC102550951","uncharacterized LOC102550951","chr1","+","mRNARGD7736179_1","Noncoding",20456130,20476236,30,null,"NA","mRNARGD7736179_1","Rat Genome Database","uncharacterized LOC102550951","chr1",100,100,{"$nulls":24},"NonCoding",4.58,4.3,4.01,5.03,5.1,4.73]
["TC1300001633.rn.1",8.21,7.06,2.219,"up",0.00822506862664115,0.0143434399895279,"uc007czl.1","cDNA, clone:Y0G0111C24, strand:unspecified.","chr13","-","MTA_TR0100010364.mm","Noncoding",70183261,70183862,30,null,"NA","MTA_TR0100010364.mm","MTA2Rn6","cDNA, clone:Y0G0111C24, strand:unspecified.","chr13",100,100,{"$nulls":24},"NonCoding",8.25,8.08,8.29,7.11,7.39,6.68]
["TC1400000415.rn.1",3.39,3.1,1.223,"up",0.00824915717880624,0.0143684056305067,"NONMMUG032784","Non-coding transcript identified by NONCODE: Antisense","chr14","+","MTA_TR0500009128.mm","Noncoding",35578046,35578507,30,null,"NA","MTA_TR0500009128.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr14",100,100,{"$nulls":24},"NonCoding",3.35,3.41,3.42,2.94,3.12,3.25]
["TC0300004623.rn.1",8.66,9.32,-1.58,"down",0.00826025638819597,0.0143805285347116,null,null,"chr3","-",null,"Pseudogene",154234684,154234974,30,null,"NA","ENSRNOT00000074770","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:161366789:161367079:1 gene:ENSRNOG00000049208 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",8.77,8.57,8.64,9.12,9.6,9.23]
["TC1800000590.rn.1",5.3,6.33,-2.042,"down",0.00833020504480417,0.0144684410189942,"NONMMUG020026","Non-coding transcript identified by NONCODE: Linc","chr18","+","MTA_TR1800001754.mm","Noncoding",54128125,54129858,30,null,"NA","MTA_TR1800001754.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",5.15,5.4,5.35,6.11,6.31,6.56]
["TC0700003745.rn.1",6.46,8.31,-3.605,"down",0.0083307435997916,0.0144684410189942,"KnowTID_00003021","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1500006567.mm","Noncoding",134499105,134501708,30,null,"NA","MTA_TR1500006567.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",6.37,6.99,6.03,8.2,8.48,8.26]
["TC1400001280.rn.1",3.26,2.8,1.376,"up",0.00841596415485885,0.014559676659103,"LOC102551529","uncharacterized LOC102551529","chr14","-","mRNARGD7530611_1","Noncoding",4371464,4375196,30,null,"NA","mRNARGD7530611_1","Rat Genome Database","uncharacterized LOC102551529","chr14",100,100,{"$nulls":24},"NonCoding",3.42,3.4,2.95,2.85,2.82,2.73]
["TC1800000631.rn.1",10.73,9.86,1.828,"up",0.00843269477182873,0.0145828114366786,"klawdoy","Unannotated AceView Transcript","chr18","+","klawdoy.aSep08","Noncoding",56914287,56917440,40,null,"NA","klawdoy.aSep08","Ace View","Unannotated AceView Transcript","chr18",100,100,{"$nulls":24},"NonCoding",10.63,10.69,10.87,9.47,9.74,10.36]
["TC0700001944.rn.1",8.79,9.95,-2.235,"down",0.00847255852285628,0.0146313564072509,"ENSMUSG00000091116","predicted gene 7991, Novel DUF622 domain containing protein pseudogene","chr7","-","MTA_TR1400001411.mm","Pseudogene",149041,152572,40,null,"NA","MTA_TR1400001411.mm","MTA2Rn6","predicted gene 7991, Novel DUF622 domain containing protein pseudogene","chr7",100,100,{"$nulls":24},"Pseudogene",8.86,9.05,8.45,9.25,10.05,10.55]
["TC1400001468.rn.1",3.6,4.09,-1.404,"down",0.00850286552901547,0.014670567849079,"LOC102549808","uncharacterized LOC102549808","chr14","-","mRNARGD7568510_1","Noncoding",16469862,16471286,30,null,"NA","mRNARGD7568510_1","Rat Genome Database","uncharacterized LOC102549808","chr14",100,100,{"$nulls":24},"NonCoding",3.67,3.69,3.45,4.13,4.26,3.87]
["TC1400000353.rn.1",4.96,5.45,-1.404,"down",0.00851031411659522,0.0146756768400043,"ENSMUSG00000087431","predicted gene 16054, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr14","+","MTA_TR0500009251.mm","Noncoding",28390153,28396731,40,null,"NA","MTA_TR0500009251.mm","MTA2Rn6","predicted gene 16054, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr14",100,100,{"$nulls":24},"NonCoding",4.97,4.86,5.04,5.21,5.69,5.45]
["TC0600001815.rn.1",4.79,4.32,1.385,"up",0.00853875316955011,0.0147091115934406,"NONMMUG019062","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","-","MTA_TR1700009590.mm","Noncoding",7534541,7536074,30,null,"NA","MTA_TR1700009590.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",4.55,4.86,4.96,4.12,4.36,4.47]
["TC1200001151.rn.1",4.38,3.73,1.569,"up",0.00857026912987638,0.0147443938848255,"NONMMUG034197","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","-","MTA_TR0500006126.mm","Noncoding",14858007,14860874,30,null,"NA","MTA_TR0500006126.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",4.01,4.41,4.71,3.91,3.69,3.58]
["TC1400000458.rn.1",10.74,9.77,1.959,"up",0.00860256554794824,0.0147780029799653,"LOC680083","similar to 40S ribosomal protein S2","chr14","+","LOC680083.aSep08-unspliced","Pseudogene",38498663,38499563,30,null,"NA","LOC680083.aSep08-unspliced","Ace View","similar to 40S ribosomal protein S2","chr14",100,100,{"$nulls":24},"Pseudogene",10.84,10.69,10.69,10.07,10.05,9.2]
["TC0300002830.rn.1",5.21,4.78,1.347,"up",0.00861774680192838,0.0147953033896321,"LOC102554154","uncharacterized LOC102554154","chr3","-","mRNARGD7508241_1","Noncoding",9333014,9336214,30,null,"NA","mRNARGD7508241_1","Rat Genome Database","uncharacterized LOC102554154","chr3",100,100,{"$nulls":24},"NonCoding",5.31,5.26,5.06,4.73,4.67,4.94]
["TC0300002848.rn.1",5.21,4.78,1.347,"up",0.00861774680192838,0.0147953033896321,"LOC102554760","uncharacterized LOC102554760","chr3","-","mRNARGD7621682_1","Noncoding",9965643,9968843,30,null,"NA","mRNARGD7621682_1","Rat Genome Database","uncharacterized LOC102554760","chr3",100,100,{"$nulls":24},"NonCoding",5.31,5.26,5.06,4.73,4.67,4.94]
["TC1100001185.rn.1",5.81,6.2,-1.31,"down",0.00864020163007149,0.0148192083842784,null,null,"chr11","-",null,"Pseudogene",22817604,22818494,30,null,"NA","ENSRNOT00000047250","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:11:26453609:26454499:-1 gene:ENSRNOG00000031122 gene_biotype:pseudogene transcript_biotype:pseudogene","chr11",100,100,{"$nulls":24},"Pseudogene",5.67,5.83,5.94,6.21,6.35,6.05]
["TC1800000409.rn.1",9.79,10.37,-1.495,"down",0.00864955908465744,0.0148297145538964,null,null,"chr18","+",null,"Pseudogene",35381901,35382908,30,null,"NA","ENSRNOT00000017311","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:35047524:35048531:1 gene:ENSRNOG00000012408 gene_biotype:pseudogene transcript_biotype:pseudogene","chr18",100,100,{"$nulls":24},"Pseudogene",9.73,9.82,9.82,10.53,10.51,10.07]
["TC1000000724.rn.1",3.85,4.16,-1.24,"down",0.00873623184317221,0.0149409214934865,"NONMMUG006251","Non-coding transcript identified by NONCODE: Antisense","chr10","+","MTA_TR1100002425.mm","Noncoding",45808857,45810284,30,null,"NA","MTA_TR1100002425.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",3.87,3.78,3.91,4.03,4.23,4.23]
["TC0600000325.rn.1",6.05,4.93,2.173,"up",0.00876029506935878,0.0149690227867235,"NONMMUG008393","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200000050.mm","Noncoding",27894757,27897239,30,null,"NA","MTA_TR1200000050.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",5.93,6.02,6.2,4.47,4.66,5.65]
["TC0500003418.rn.1",4.14,3.31,1.778,"up",0.00882022327682294,0.0150477409685417,"NONMMUG030343","Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400011253.mm","Noncoding",135505912,135507886,30,null,"NA","MTA_TR0400011253.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",4.09,4,4.33,3.44,3.18,3.32]
["TC0500002525.rn.1",4.84,6.17,-2.514,"down",0.00884716915040622,0.0150746954308704,"NONMMUG028894","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400008183.mm","Noncoding",52474801,52475582,30,null,"NA","MTA_TR0400008183.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",4.74,4.6,5.17,5.71,5.73,7.06]
["TC0200000067.rn.1",4.47,4.17,1.231,"up",0.00890585942052996,0.0151373204711866,"LOC102551390","uncharacterized LOC102551390","chr2","+","mRNARGD7629602_1","Noncoding",8841634,8883955,40,null,"NA","mRNARGD7629602_1","Rat Genome Database","uncharacterized LOC102551390","chr2",100,100,{"$nulls":24},"NonCoding",4.41,4.64,4.36,4.27,4.13,4.12]
["TC1600000974.rn.1",7.74,7.29,1.366,"up",0.00892056791169318,0.0151549325373127,null,null,"chr16","+",null,"Pseudogene",81538476,81538874,30,null,"NA","ENSRNOT00000075497","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:81026568:81026966:1 gene:ENSRNOG00000050993 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",7.85,7.74,7.63,7.08,7.54,7.24]
["TC1000001221.rn.1",6.85,6.06,1.729,"up",0.00893549759765446,0.0151713936828126,null,null,"chr10","+",null,"Pseudogene",68676194,68677040,30,null,"NA","ENSRNOT00000051237","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:68339640:68340486:1 gene:ENSRNOG00000029282 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",6.95,6.95,6.66,5.88,6,6.31]
["TC2000000559.rn.1",13.86,12.81,2.071,"up",0.00895024145108996,0.0151890039318956,null,null,"chr20","+",null,"Pseudogene",21386231,21387837,30,null,"NA","ENSRNOT00000074355","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:23487091:23488697:1 gene:ENSRNOG00000045870 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",13.6,14.54,13.43,12.72,12.49,13.21]
["TC1900000968.rn.1",6.14,6.74,-1.516,"down",0.00895797811368803,0.015194711240394,"uc009mzj.1","cDNA, clone:Y1G0121M19, strand:unspecified.","chr19","-","MTA_TR0800003736.mm","Noncoding",9612959,9613174,30,null,"NA","MTA_TR0800003736.mm","MTA2Rn6","cDNA, clone:Y1G0121M19, strand:unspecified.","chr19",100,100,{"$nulls":24},"NonCoding",6.29,5.96,6.17,6.35,6.85,7.03]
["TC1500001383.rn.1",8.75,7.31,2.713,"up",0.00897450716480562,0.0152153195354127,"LOC102552857","uncharacterized LOC102552857","chr15","-","mRNARGD7560030_1","Noncoding",15237431,15240514,30,null,"NA","mRNARGD7560030_1","Rat Genome Database","uncharacterized LOC102552857","chr15",100,100,{"$nulls":24},"NonCoding",8.79,8.68,8.78,7.48,7.85,6.6]
["TC1600001319.rn.1",16.38,15.46,1.892,"up",0.00901111284783227,0.0152504122649474,null,null,"chr16","-",null,"Pseudogene",17691339,17693752,50,null,"NA","ENSRNOT00000072156","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:17571377:17573790:-1 gene:ENSRNOG00000046054 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",16.15,16.95,16.03,15.16,15.41,15.81]
["TC0600001629.rn.1",3.12,3.4,-1.214,"down",0.00907605857345751,0.0153245289331943,"LOC102552314","uncharacterized LOC102552314","chr6","+","mRNARGD7595554_1","Noncoding",137084842,137092386,30,null,"NA","mRNARGD7595554_1","Rat Genome Database","uncharacterized LOC102552314","chr6",100,100,{"$nulls":24},"NonCoding",3.15,3.07,3.15,3.43,3.32,3.44]
["TC0100005502.rn.1",4.27,5.28,-2.014,"down",0.00909967696468507,0.0153511205742978,"NONMMUG038119","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR0700011318.mm","Noncoding",112644736,112648208,30,null,"NA","MTA_TR0700011318.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",3.94,4.42,4.46,5.33,5.05,5.46]
["TC1500001013.rn.1",7.39,6.52,1.828,"up",0.0091158813866749,0.015369501656598,"ENSMUSG00000097142","predicted gene, 26778, Non-coding transcript identified by NONCODE: Antisense","chr15","+","MTA_TR1400003819.mm","Noncoding",87386202,87390465,30,null,"NA","MTA_TR1400003819.mm","MTA2Rn6","predicted gene, 26778, Non-coding transcript identified by NONCODE: Antisense","chr15",100,100,{"$nulls":24},"NonCoding",7.46,7.17,7.53,6.62,6.87,6.06]
["TC1300000542.rn.1",4.27,4.9,-1.548,"down",0.00911893221582661,0.015371661477062,"NONMMUG002124","Non-coding transcript identified by NONCODE: Antisense","chr13","+","MTA_TR0100004610.mm","Noncoding",73742344,73743241,30,null,"NA","MTA_TR0100004610.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr13",100,100,{"$nulls":24},"NonCoding",4.3,4.16,4.36,4.81,5.14,4.75]
["TC0100000286.rn.1",16.15,15.46,1.613,"up",0.00913925751188357,0.0153894961456892,null,null,"chr1","+",null,"Pseudogene",25967079,25970359,30,null,"NA","ENSRNOT00000075302","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:27427128:27430408:1 gene:ENSRNOG00000050281 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",15.9,16.66,15.88,15.49,15.45,15.43]
["TC0600000752.rn.1",4.65,4.05,1.516,"up",0.00916945247405963,0.015423894541192,"ENSMUSG00000097159","predicted gene, 26517, Non-coding transcript identified by NONCODE: Antisense","chr6","+","MTA_TR1200001185.mm","Noncoding",72661005,72662423,30,null,"NA","MTA_TR1200001185.mm","MTA2Rn6","predicted gene, 26517, Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",4.39,4.58,4.97,4.08,4.15,3.91]
["TC0100000375.rn.1",4.5,4.12,1.301,"up",0.00921934693990564,0.0154762941506237,"NONMMUG011342","Non-coding transcript identified by NONCODE: Antisense","chr1","+","MTA_TR1300006425.mm","Noncoding",36304092,36304563,30,null,"NA","MTA_TR1300006425.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",4.75,4.42,4.34,4.09,4.2,4.06]
["TC1100000918.rn.1",7.2,7.84,-1.558,"down",0.00926712046252802,0.0155273855418981,"KnowTID_00003264","Non-coding transcript identified by Luo, et al.","chr11","+","MTA_TR1600004753.mm","Noncoding",83412728,83414207,30,null,"NA","MTA_TR1600004753.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al.","chr11",100,100,{"$nulls":24},"NonCoding",7.48,6.83,7.29,7.97,7.83,7.72]
["TC0800001946.rn.1",3.79,4.34,-1.464,"down",0.00931320325090798,0.0155724241732063,"LOC102546430","uncharacterized LOC102546430","chr8","-","mRNARGD7685302_1","Noncoding",12688011,12703348,30,null,"NA","mRNARGD7685302_1","Rat Genome Database","uncharacterized LOC102546430","chr8",100,100,{"$nulls":24},"NonCoding",3.87,3.76,3.73,4.02,4.64,4.36]
["TC0X00002266.rn.1",17.3,16.46,1.79,"up",0.00935918491282397,0.0156175217214856,null,null,"chrX","-",null,"Noncoding",112738346,112738670,30,null,"NA","NONRATT059962","NONCODE","Non-coding transcript identified by NONCODE","chrX",100,100,{"$nulls":24},"NonCoding",17.03,17.83,17.03,16.41,16.4,16.57]
["TC0X00002413.rn.1",4.12,4.41,-1.223,"down",0.00936247836902162,0.0156200164952242,"NONMMUG044793","Non-coding transcript identified by NONCODE: Linc","chrX","-","MTA_TR0X00005922.mm","Noncoding",129779045,129780980,30,null,"NA","MTA_TR0X00005922.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",4.2,3.97,4.2,4.38,4.39,4.46]
["TC0400003355.rn.1",6.31,6.94,-1.548,"down",0.00938771368362575,0.0156410871281664,"NONMMUG036029","Non-coding transcript identified by NONCODE: Antisense","chr4","-","MTA_TR0600009003.mm","Noncoding",124029984,124031230,30,null,"NA","MTA_TR0600009003.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",6.13,6.48,6.31,6.81,7.15,6.86]
["TC0200000637.rn.1",4.42,5.99,-2.969,"down",0.00947188127933016,0.0156820481989367,"KnowTID_00002682","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1500000427.mm","Noncoding",71416058,71419333,30,null,"NA","MTA_TR1500000427.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.7,4.07,4.5,5.44,5.4,7.13]
["TC1000000807.rn.1",6.64,6.15,1.404,"up",0.00950089460010405,0.0157106178104148,"LOC102552369","uncharacterized LOC102552369","chr10","+","mRNARGD7503947_1","Noncoding",48926897,48929450,124,null,"NA","mRNARGD7503947_1","Rat Genome Database","uncharacterized LOC102552369","chr10",100,100,{"$nulls":24},"NonCoding",6.59,6.73,6.59,6.16,6.42,5.86]
["TC0500003529.rn.1",5.8,5.15,1.569,"up",0.00953148405359799,0.0157447137214769,"NONMMUG030490","Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400011739.mm","Noncoding",139882452,139883788,30,null,"NA","MTA_TR0400011739.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",5.51,5.99,5.91,5.08,4.85,5.52]
["TC0100003455.rn.1",3.25,3.55,-1.231,"down",0.00956198450805729,0.0157774865155627,"NONMMUG021151","Non-coding transcript identified by NONCODE: Antisense","chr1","+","MTA_TR1900001653.mm","Noncoding",247979002,247986027,30,null,"NA","MTA_TR1900001653.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",3.35,3.22,3.17,3.67,3.53,3.46]
["TC0200001357.rn.1",6.37,5.58,1.729,"up",0.00959195472418065,0.0158085242422905,"NONMMUG026813","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR0300001637.mm","Noncoding",165424672,165428941,30,null,"NA","MTA_TR0300001637.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",6.18,6.57,6.37,5.55,5.6,5.58]
["TC1000002757.rn.1",3.67,3.39,1.214,"up",0.00966504497077132,0.0159004511220971,"NovelTID_00001269","Non-coding transcript identified by Luo, et al.","chr10","-","MTA_TR1100010133.mm","Noncoding",37346871,37348862,30,null,"NA","MTA_TR1100010133.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al.","chr10",100,100,{"$nulls":24},"NonCoding",3.73,3.64,3.64,3.42,3.24,3.52]
["TC0400001250.rn.1",7.04,7.88,-1.79,"down",0.00968663427501158,0.0159251616443504,"XLOC_033897","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4","+","TCONS_00082708","Noncoding",115208409,115209496,30,null,"NA","TCONS_00082708","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4",100,100,{"$nulls":24},"NonCoding",7.25,6.63,7.25,7.67,8.12,7.84]
["TC0100000562.rn.1",4.47,3.95,1.434,"up",0.00969227167366363,0.0159283311928459,"NONMMUG017403","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR1700000235.mm","Noncoding",53450189,53454267,30,null,"NA","MTA_TR1700000235.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.38,4.26,4.77,4.16,3.8,3.9]
["TC1100001498.rn.1",5.96,5.23,1.659,"up",0.00972244601184562,0.0159569737029261,"4930542D17Rik","RIKEN cDNA 4930542D17 gene","chr11","-","NR_040566","Noncoding",52632169,52828514,30,"16|16",75211,"NR_040566","RefSeq","Mus musculus RIKEN cDNA 4930542D17 gene (4930542D17Rik), long non-coding RNA.","chr11",100,100,null,null,"NR_040566","Mm.399337","testis| adult",{"$nulls":19},"NonCoding",5.75,5.73,6.39,5.43,5.08,5.19]
["TC0200001334.rn.1",7.33,6.07,2.395,"up",0.00977049733843873,0.0160040838534672,"LOC102547006","uncharacterized LOC102547006","chr2","+","mRNARGD7586474_1","Noncoding",164184672,164186665,30,null,"NA","mRNARGD7586474_1","Rat Genome Database","uncharacterized LOC102547006","chr2",100,100,{"$nulls":24},"NonCoding",7.29,7.5,7.19,5.75,5.77,6.68]
["TC1900001275.rn.1",4.8,4,1.741,"up",0.00981524110625361,0.016050722737572,"NONMMUG041032","Non-coding transcript identified by NONCODE: Linc","chr19","-","MTA_TR0800002831.mm","Noncoding",30162789,30163365,30,null,"NA","MTA_TR0800002831.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr19",100,100,{"$nulls":24},"NonCoding",4.45,4.86,5.1,3.9,3.78,4.32]
["TC0800002798.rn.1",5.38,4.67,1.636,"up",0.00982632566750587,0.0160603612681791,"NONMMUG043151","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","-","MTA_TR0900008193.mm","Noncoding",72248179,72250004,30,null,"NA","MTA_TR0900008193.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",5.2,5.5,5.43,4.85,4.25,4.9]
["TC0600001638.rn.1",3.53,4.03,-1.414,"down",0.00983766440448182,0.0160712004578339,"NONMMUG010082","Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1200003706.mm","Noncoding",137311720,137313056,30,null,"NA","MTA_TR1200003706.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",3.65,3.61,3.34,4.32,3.96,3.81]
["TC1600001734.rn.1",4.4,5,-1.516,"down",0.00988284848783901,0.0161182012094875,"LOC102554239","uncharacterized LOC102554239","chr16","-","mRNARGD7653332_1","Noncoding",58742121,58752354,71,null,"NA","mRNARGD7653332_1","Rat Genome Database","uncharacterized LOC102554239","chr16",100,100,{"$nulls":24},"NonCoding",4.29,4.43,4.47,5.26,5.06,4.67]
["TC0300000328.rn.1",8.33,8.7,-1.292,"down",0.00992185001317729,0.0161666313271647,"zf-C2H2.80","Unannotated AceView Transcript","chr3","+","zf-C2H2.80.aSep08-unspliced","Pseudogene",15772108,15773541,30,null,"NA","zf-C2H2.80.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr3",100,100,{"$nulls":24},"Pseudogene",8.35,8.28,8.35,8.77,8.73,8.6]
["TC0100002374.rn.1",5.08,4.29,1.729,"up",0.00993826560889959,0.0161870988846044,"LOC102552863","uncharacterized LOC102552863","chr1","+","mRNARGD7678481_1","Noncoding",176084483,176093327,30,null,"NA","mRNARGD7678481_1","Rat Genome Database","uncharacterized LOC102552863","chr1",100,100,{"$nulls":24},"NonCoding",4.95,5.52,4.78,4.21,4.27,4.38]
["TC0200002622.rn.1",5.45,4.98,1.385,"up",0.0100047001851351,0.0162604460063606,"uc007rln.1","6 days neonate skin cDNA, RIKEN full-length enriched library, clone:A030001P10 product:unclassifiable, full insert sequence.","chr2","-","MTA_TR1300006975.mm","Noncoding",23384340,23385663,30,null,"NA","MTA_TR1300006975.mm","MTA2Rn6","6 days neonate skin cDNA, RIKEN full-length enriched library, clone:A030001P10 product:unclassifiable, full insert sequence.","chr2",100,100,{"$nulls":24},"NonCoding",5.63,5.17,5.54,4.81,5.11,5.03]
["TC0600002451.rn.1",4.53,3.9,1.548,"up",0.0100521008747003,0.0163163421238923,"NONMMUG009003","Non-coding transcript identified by NONCODE: Antisense","chr6","-","MTA_TR1200004829.mm","Noncoding",74905387,74922239,40,null,"NA","MTA_TR1200004829.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",4.43,4.43,4.73,3.99,3.94,3.78]
["TC1500001370.rn.1",5.83,6.45,-1.537,"down",0.0100701605413184,0.0163271195410903,null,null,"chr15","-",null,"Pseudogene",12912237,12912617,30,null,"NA","ENSRNOT00000033248","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:16939456:16939836:-1 gene:ENSRNOG00000027237 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",5.83,6.15,5.51,6.54,6.38,6.43]
["TC1500001533.rn.1",5.39,6.73,-2.532,"down",0.0101101328246054,0.0163781700360179,"KnowTID_00002472","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15","-","MTA_TR1400006006.mm","Noncoding",26581110,26582642,30,null,"NA","MTA_TR1400006006.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",5.71,5.22,5.23,6.11,7.02,7.06]
["TC0300001855.rn.1",4.11,4.69,-1.495,"down",0.0101277644429307,0.016402143962162,"NONMMUG024885","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200007093.mm","Noncoding",135191330,135192649,30,null,"NA","MTA_TR0200007093.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.06,4.24,4.02,4.64,4.52,4.92]
["TC0400000777.rn.1",4.1,4.6,-1.414,"down",0.0101364785038855,0.016411666333395,null,null,"chr4","+",null,"Pseudogene",72638388,72639387,30,null,"NA","ENSRNOT00000030730","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:137340374:137341373:1 gene:ENSRNOG00000026045 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",4.19,4.06,4.05,4.59,4.38,4.83]
["TC0200001646.rn.1",3.86,3.29,1.485,"up",0.0101773461786205,0.016456719959465,"MGI:5012046","PREDICTED:  predicted gene, 19861 (Gm19861), miscRNA.","chr2","+","MTA_TR0300002697.mm","Noncoding",193334212,193335003,27,null,"NA","MTA_TR0300002697.mm","MTA2Rn6","PREDICTED:  predicted gene, 19861 (Gm19861), miscRNA.","chr2",100,100,{"$nulls":24},"NonCoding",4.1,3.98,3.5,3.45,3.1,3.33]
["TC0300004282.rn.1",5.08,5.75,-1.591,"down",0.01024060907532,0.0165463324572025,"LOC102548359","uncharacterized LOC102548359","chr3","-","mRNARGD7625943_1","Noncoding",132727892,132730610,30,null,"NA","mRNARGD7625943_1","Rat Genome Database","uncharacterized LOC102548359","chr3",100,100,{"$nulls":24},"NonCoding",4.71,5.2,5.34,5.69,5.84,5.73]
["TC2000001212.rn.1",4.94,5.45,-1.424,"down",0.0102574340636041,0.0165596549366977,"MGI:2442581","PREDICTED:  RIKEN cDNA C230013L11 gene (C230013L11Rik), miscRNA.","chr20","-","MTA_TR1700006304.mm","Noncoding",7749346,7753042,30,null,"NA","MTA_TR1700006304.mm","MTA2Rn6","PREDICTED:  RIKEN cDNA C230013L11 gene (C230013L11Rik), miscRNA.","chr20",100,100,{"$nulls":24},"NonCoding",4.71,4.94,5.17,5.34,5.39,5.62]
["TC1900000956.rn.1",16.94,16.12,1.765,"up",0.0102941315212989,0.016588066665722,null,null,"chr19","-",null,"Noncoding",6857437,6857791,30,null,"NA","NONRATT027882","NONCODE","Non-coding transcript identified by NONCODE","chr19",100,100,{"$nulls":24},"NonCoding",16.65,17.5,16.68,16.15,16.16,16.05]
["TC0200004709.rn.1",6.8,7.64,-1.79,"down",0.010348734689386,0.0166613167480409,"NCBI_Gene:100862309","PREDICTED:  uncharacterized LOC100862309 (LOC100862309), miscRNA.","chr2","-","MTA_TR0300009887.mm","Noncoding",236680248,236717278,15,null,"NA","MTA_TR0300009887.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862309 (LOC100862309), miscRNA.","chr2",100,100,{"$nulls":24},"NonCoding",7.16,6.53,6.72,7.72,7.65,7.54]
["TC1200000195.rn.1",3.85,3.26,1.505,"up",0.0103532422817581,0.0166613167480409,null,"similar to developmental pluripotency associated 4 isoform 1","chr12","+","ENSRNOT00000074158","Pseudogene",11734257,11735141,30,"11q21",685378,"ENSRNOT00000074158","ENSEMBL","ensembl:known chromosome:Rnor_5.0:12:13797182:13798066:1 gene:ENSRNOG00000048886 gene_biotype:pseudogene transcript_biotype:pseudogene","chr12",100,100,null,null,"ENSRNOT00000074158","Rn.220900",null,"ENSRNOT00000074158","GO:0006351","transcription, DNA-templated","inferred from electronic annotation","ENSRNOT00000074158","GO:0005634","nucleus","inferred from electronic annotation",{"$nulls":11},"Pseudogene",4.18,3.91,3.46,3.2,3.18,3.4]
["TC0X00002440.rn.1",3.71,4.08,-1.292,"down",0.0103998877119166,0.0167119749716654,"NONMMUG044824","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00005976.mm","Noncoding",134712144,134713500,30,null,"NA","MTA_TR0X00005976.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",3.73,3.68,3.72,4.33,3.89,4.01]
["TC1100001385.rn.1",15.98,14.88,2.144,"up",0.0104393977869937,0.016763119322648,null,null,"chr11","-",null,"Pseudogene",36597079,36598695,30,null,"NA","ENSRNOT00000074702","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:11:40126933:40128549:-1 gene:ENSRNOG00000046321 gene_biotype:pseudogene transcript_biotype:pseudogene","chr11",100,100,{"$nulls":24},"Pseudogene",15.77,16.59,15.57,14.64,14.54,15.45]
["TC0100001971.rn.1",15.55,14.87,1.602,"up",0.0104564407090365,0.0167764691564305,null,null,"chr1","+",null,"Pseudogene",151496423,151499705,30,null,"NA","ENSRNOT00000071080","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:157806800:157810082:1 gene:ENSRNOG00000049246 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",15.29,16.08,15.29,14.89,14.85,14.88]
["TC0200002426.rn.1",3.39,3.71,-1.248,"down",0.0104948628856367,0.0168148185931005,"NONMMUG028225","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR0300005053.mm","Noncoding",258997192,259001545,30,null,"NA","MTA_TR0300005053.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",3.46,3.3,3.4,3.55,3.71,3.86]
["TC0400003095.rn.1",6.01,5.05,1.945,"up",0.0105114525673743,0.016834934052749,"NONMMUG035686","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600008232.mm","Noncoding",100805650,100807039,30,null,"NA","MTA_TR0600008232.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",6.06,5.72,6.25,4.91,4.84,5.4]
["TC0600001277.rn.1",3.89,4.95,-2.085,"down",0.0105160509003426,0.0168378947543415,"NONMMUG009659","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200002647.mm","Noncoding",113808503,113809744,30,null,"NA","MTA_TR1200002647.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",3.71,3.91,4.05,4.78,4.49,5.59]
["TC1300001570.rn.1",3.64,3.93,-1.223,"down",0.0105273407277118,0.0168513118117473,"NONMMUG001975","Non-coding transcript identified by NONCODE: Linc","chr13","-","MTA_TR0100010224.mm","Noncoding",63516723,63526149,30,null,"NA","MTA_TR0100010224.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr13",100,100,{"$nulls":24},"NonCoding",3.64,3.6,3.67,4.1,3.8,3.89]
["TC0100001549.rn.1",4.99,6.17,-2.266,"down",0.0105584997947258,0.0168871834945384,"NONMMUG038061","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR0700003348.mm","Noncoding",104580833,104583209,30,null,"NA","MTA_TR0700003348.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.88,4.71,5.38,5.57,5.98,6.96]
["TC0200003274.rn.1",4.3,4.02,1.214,"up",0.010593665299944,0.0169262840255084,"ENSMUSG00000088229","predicted gene, 22604, Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300000099.mm","Noncoding",94589509,94589840,30,null,"NA","MTA_TR0300000099.mm","MTA2Rn6","predicted gene, 22604, Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.35,4.18,4.37,4.01,4.09,3.97]
["TC0300003283.rn.1",4.16,3.87,1.223,"up",0.0106104654098164,0.0169468917464068,"NCBI_Gene:100861681","PREDICTED:  uncharacterized LOC100861681 (LOC100861681), miscRNA.","chr3","-","MTA_TR0200013280.mm","Noncoding",58066922,58070066,30,null,"NA","MTA_TR0200013280.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861681 (LOC100861681), miscRNA.","chr3",100,100,{"$nulls":24},"NonCoding",4.01,4.34,4.12,3.91,3.85,3.85]
["TC0300001874.rn.1",4.36,5.47,-2.158,"down",0.0106420637054838,0.0169838337058157,"NONMMUG024907","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200007133.mm","Noncoding",137778380,137780855,30,null,"NA","MTA_TR0200007133.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.45,4.42,4.21,5,5.28,6.12]
["TC0100001659.rn.1",7.22,8.51,-2.445,"down",0.0106766085931496,0.0170181104672051,"LOC102555499","uncharacterized LOC102555499","chr1","+","mRNARGD7641297_1","Noncoding",124621690,124624541,30,null,"NA","mRNARGD7641297_1","Rat Genome Database","uncharacterized LOC102555499","chr1",100,100,{"$nulls":24},"NonCoding",7.35,7.12,7.18,8.45,8.25,8.82]
["TC0700000171.rn.1",8.09,7.45,1.558,"up",0.0107476913464372,0.0170984656451104,"Mir5615-1","microRNA mir-5615-1 (Mir5615-1), microRNA.","chr7","+","MTA_TR1000008046.mm","Noncoding",11480033,11480059,3,null,"NA","MTA_TR1000008046.mm","MTA2Rn6","microRNA mir-5615-1 (Mir5615-1), microRNA.","chr7",100,100,{"$nulls":24},"NonCoding",8.19,8.1,7.99,7.59,7.58,7.18]
["TC0200001190.rn.1",5.71,5.01,1.625,"up",0.0107844366537114,0.0171387444931521,"RGD1563943","similar to mcdc21 protein","chr2","+","mRNARGD2448859_1","Pseudogene",147477431,147480013,30,null,"NA","mRNARGD2448859_1","Rat Genome Database","similar to mcdc21 protein","chr2",100,100,{"$nulls":24},"Pseudogene",5.76,5.77,5.61,4.71,5.32,5]
["TC0200000265.rn.1",9.76,9.18,1.495,"up",0.0107848514641253,0.0171387444931521,null,null,"chr2","+",null,"Pseudogene",30762943,30763339,30,null,"NA","ENSRNOT00000048881","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:49920739:49921135:1 gene:ENSRNOG00000028763 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",9.71,9.58,9.99,9.22,9.25,9.07]
["TC0800000548.rn.1",3.37,3.65,-1.214,"down",0.010800480356183,0.0171442551778416,"NONMMUG042584","Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900001416.mm","Noncoding",48190430,48198916,30,null,"NA","MTA_TR0900001416.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",3.38,3.35,3.37,3.85,3.57,3.54]
["TC1400001354.rn.1",4.63,4.17,1.376,"up",0.0108011472377122,0.0171442551778416,"NONMMUG033146","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","-","MTA_TR0500003344.mm","Noncoding",8685704,8686445,30,null,"NA","MTA_TR0500003344.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",4.57,4.72,4.61,4.15,4.21,4.16]
["TC1300000683.rn.1",5.05,6.15,-2.144,"down",0.0108296138659003,0.0171690446714022,"NONMMUG002344","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","+","MTA_TR0100005042.mm","Noncoding",84516267,84519390,30,null,"NA","MTA_TR0100005042.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",4.89,5.17,5.1,5.49,6.26,6.69]
["TC1500000718.rn.1",3.84,4.74,-1.866,"down",0.0108763970144552,0.0172212097838029,"KnowTID_00002323","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15","+","MTA_TR1400003039.mm","Noncoding",47946836,47949320,30,null,"NA","MTA_TR1400003039.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",4.06,3.73,3.74,4.28,4.56,5.37]
["TC1400000123.rn.1",7.65,5.84,3.506,"up",0.0109433209917335,0.0173003666679471,"LOC100910270","uncharacterized LOC100910270","chr14","+","mRNARGD6499132_1","Noncoding",7505895,7514158,30,null,"NA","mRNARGD6499132_1","Rat Genome Database","uncharacterized LOC100910270","chr14",100,100,{"$nulls":24},"NonCoding",7.69,7.37,7.89,5.68,6.29,5.55]
["TC0X00001942.rn.1",3.88,3.35,1.444,"up",0.0109752935743762,0.0173398658190531,"NONMMUG045480","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00007512.mm","Noncoding",71063059,71065110,30,null,"NA","MTA_TR0X00007512.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",3.67,4.04,3.92,3.38,3.06,3.61]
["TC1900001228.rn.1",8.36,7.68,1.602,"up",0.0110004049085818,0.0173605917749591,"LOC100359748","zinc finger CCCH type antiviral 1","chr19","-","mRNARGD6617675_1","Pseudogene",26270530,26274929,30,null,"NA","mRNARGD6617675_1","Rat Genome Database","zinc finger CCCH type antiviral 1","chr19",100,100,{"$nulls":24},"Pseudogene",8.32,8.79,7.97,7.69,7.48,7.88]
["TC0300000712.rn.1",7,8.63,-3.095,"down",0.011004499530014,0.0173629041645766,"LOC102553813","uncharacterized LOC102553813","chr3","+","mRNARGD7743686_1","Noncoding",52533372,52642383,30,null,"NA","mRNARGD7743686_1","Rat Genome Database","uncharacterized LOC102553813","chr3",100,100,{"$nulls":24},"NonCoding",7.18,6.9,6.92,8.07,8.53,9.29]
["TC1300000205.rn.1",8.75,7.8,1.932,"up",0.0110341476757116,0.0173871977637983,"NONMMUG041522","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","+","MTA_TR0800004229.mm","Noncoding",45079812,45080260,30,null,"NA","MTA_TR0800004229.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",8.81,8.53,8.91,7.62,8.15,7.64]
["TC0500000181.rn.1",3.87,4.32,-1.366,"down",0.0110555626561103,0.0174081017856501,"LOC102552785","uncharacterized LOC102552785","chr5","+","mRNARGD7718065_1","Noncoding",22749281,22755496,30,null,"NA","mRNARGD7718065_1","Rat Genome Database","uncharacterized LOC102552785","chr5",100,100,{"$nulls":24},"NonCoding",3.86,3.85,3.91,4.4,4.01,4.55]
["TC2000000645.rn.1",3.82,3.27,1.464,"up",0.0110596067267819,0.0174081577066807,"NONMMUG003707","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr20","+","MTA_TR1000001518.mm","Noncoding",28861233,28913465,30,null,"NA","MTA_TR1000001518.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr20",100,100,{"$nulls":24},"NonCoding",3.58,3.86,4.03,3.08,3.12,3.6]
["TC0200004952.rn.1",16.1,15.28,1.765,"up",0.0110726055629453,0.0174207255895229,null,null,"chr2","-",null,"Pseudogene",263628021,263633542,30,null,"NA","ENSRNOT00000073219","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:282297229:282302750:-1 gene:ENSRNOG00000048305 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",15.86,16.65,15.78,15.13,15.21,15.5]
["TC0100001865.rn.1",3.95,3.62,1.257,"up",0.0111081407230822,0.0174537962004284,"LOC102553801","uncharacterized LOC102553801","chr1","+","mRNARGD7565711_1","Noncoding",142184012,142185731,30,null,"NA","mRNARGD7565711_1","Rat Genome Database","uncharacterized LOC102553801","chr1",100,100,{"$nulls":24},"NonCoding",3.99,3.94,3.92,3.56,3.57,3.74]
["TC0100007285.rn.1",4.88,3.73,2.219,"up",0.0111492719074472,0.0174985545992289,"NONMMUG020844","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR1900004115.mm","Noncoding",227606597,227606937,30,null,"NA","MTA_TR1900004115.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.29,4.81,4.53,4,3.78,3.42]
["TC0200004391.rn.1",4.25,3.68,1.485,"up",0.0112026919907005,0.0175522650464921,"LOC102548235","uncharacterized LOC102548235","chr2","-","mRNARGD7594117_1","Noncoding",207564837,207565855,30,null,"NA","mRNARGD7594117_1","Rat Genome Database","uncharacterized LOC102548235","chr2",100,100,{"$nulls":24},"NonCoding",4.12,4.4,4.22,3.47,3.61,3.97]
["TC0700000763.rn.1",8.19,6.95,2.362,"up",0.0112090904548533,0.017558498929896,"NCBI_Gene:100862040","PREDICTED:  uncharacterized LOC100862040, transcript variant 2 (LOC100862040), miscRNA.","chr7","+","MTA_TR1000004310.mm","Noncoding",60829454,60854015,40,null,"NA","MTA_TR1000004310.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862040, transcript variant 2 (LOC100862040), miscRNA.","chr7",100,100,{"$nulls":24},"NonCoding",8.29,7.62,8.66,6.92,7.22,6.71]
["TC1000000005.rn.1",15.56,14.95,1.526,"up",0.0112437617614002,0.0175928108050156,null,null,"chr10","+",null,"Pseudogene",209113,210112,30,null,"NA","ENSRNOT00000073489","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:10900788:10901787:1 gene:ENSRNOG00000049195 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",15.42,15.98,15.27,14.95,14.99,14.91]
["TC0X00000181.rn.1",8.45,9,-1.464,"down",0.0112519682663059,0.0176026284456524,null,null,"chrX","+",null,"Pseudogene",18140981,18141905,30,null,"NA","ENSRNOT00000043633","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:18907559:18908483:1 gene:ENSRNOG00000042694 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",8.67,8.12,8.55,8.96,9.23,8.8]
["TC0300000151.rn.1",3.2,2.93,1.206,"up",0.0113144057149226,0.0176603955138755,"NONMMUG022409","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr3","+","MTA_TR0200001438.mm","Noncoding",6173355,6178738,30,null,"NA","MTA_TR0200001438.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr3",100,100,{"$nulls":24},"NonCoding",3.28,3.1,3.21,2.91,2.86,3.02]
["TC1600000822.rn.1",9.8,9.36,1.357,"up",0.0113304686647253,0.0176711407167285,"H2afz","H2A histone family, member Z-like","chr16","+","ENSRNOT00000058436","Pseudogene",71438519,71439701,31,null,100360145,"ENSRNOT00000058436","ENSEMBL","ensembl:known chromosome:Rnor_5.0:16:71095553:71096359:1 gene:ENSRNOG00000038375 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,"ENSRNOT00000058436","P0C0S7","ENSRNOT00000058436","Rn.3636","adrenal gland| brain| connective tissue| dorsal root ganglion| kidney| liver| ovary| pancreas| pituitary gland| placenta| small intestine| vibrissa| metamorphosing embryo| juvenile| adult","ENSRNOT00000058436","GO:0006334","nucleosome assembly","inferred from electronic annotation","ENSRNOT00000058436","GO:0000786","nucleosome","inferred from electronic annotation","ENSRNOT00000058436","GO:0000978","RNA polymerase II core promoter proximal region sequence-specific DNA binding","not recorded",{"$nulls":7},"Pseudogene",9.96,9.59,9.86,9.26,9.59,9.22]
["TC1900001048.rn.1",4.18,3.73,1.366,"up",0.011431191098923,0.0177979045065332,"koydar","Unannotated AceView Transcript","chr19","-","koydar.aSep08","Noncoding",15351708,15355301,60,null,"NA","koydar.aSep08","Ace View","Unannotated AceView Transcript","chr19",100,100,{"$nulls":24},"NonCoding",4.12,3.92,4.51,3.73,3.73,3.72]
["TC1900000064.rn.1",4.31,5,-1.613,"down",0.0114604214824651,0.017829032918852,"NONMMUG041389","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19","+","MTA_TR0800008567.mm","Noncoding",6405811,6407728,30,null,"NA","MTA_TR0800008567.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19",100,100,{"$nulls":24},"NonCoding",4.37,4.2,4.35,4.77,4.99,5.23]
["TC1800000671.rn.1",3.76,4.16,-1.32,"down",0.0114772009566365,0.0178423534828828,"KnowTID_00003864","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr18","+","MTA_TR1800002002.mm","Noncoding",59940061,59941965,30,null,"NA","MTA_TR1800002002.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",3.7,3.7,3.88,4,4.42,4.06]
["TC0100007708.rn.1",4.46,4.12,1.266,"up",0.011509329896535,0.0178649906307826,"NONMMUG021378","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR1900005189.mm","Noncoding",261217133,261219212,30,null,"NA","MTA_TR1900005189.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.38,4.39,4.62,4.11,4,4.26]
["TC2000000480.rn.1",16.94,16.4,1.454,"up",0.0115768183324316,0.0179442233650994,null,null,"chr20","+",null,"Pseudogene",15342681,15343684,30,null,"NA","ENSRNOT00000071250","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:17529533:17530536:1 gene:ENSRNOG00000046774 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",16.8,17.31,16.7,16.5,16.38,16.31]
["TC0400003562.rn.1",5.3,4.61,1.613,"up",0.0115997058670758,0.0179700785353584,"MGI:5434908","PREDICTED:  uncharacterized LOC100862196 (LOC100862196), miscRNA.","chr4","-","MTA_TR0600009603.mm","Noncoding",146692309,146776749,40,null,"NA","MTA_TR0600009603.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862196 (LOC100862196), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",5.61,5.12,5.17,4.24,4.74,4.85]
["TC0200004571.rn.1",5.2,6.29,-2.129,"down",0.0116916904482379,0.0180626427229047,"LOC102553943","uncharacterized LOC102553943","chr2","-","mRNARGD7689135_1","Noncoding",224338612,224360175,40,null,"NA","mRNARGD7689135_1","Rat Genome Database","uncharacterized LOC102553943","chr2",100,100,{"$nulls":24},"NonCoding",4.75,5.51,5.35,6.74,6.16,5.96]
["TC0200002553.rn.1",7.22,7.64,-1.338,"down",0.0116965131590132,0.0180684864459954,"NONMMUG011519","Non-coding transcript identified by NONCODE: Antisense","chr2","-","MTA_TR1300006804.mm","Noncoding",13613831,13614935,30,null,"NA","MTA_TR1300006804.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",7.09,7.3,7.26,7.38,7.69,7.84]
["TC0200001340.rn.1",5.13,4.46,1.591,"up",0.0117370537813908,0.0181069592572415,"NONMMUG026790","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300001575.mm","Noncoding",164486575,164487880,30,null,"NA","MTA_TR0300001575.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.1,5.1,5.2,4.26,4.27,4.85]
["TC0200001396.rn.1",14.13,13.38,1.682,"up",0.0117618317614243,0.0181323020525117,null,null,"chr2","+",null,"Pseudogene",172891043,172896496,30,null,"NA","ENSRNOT00000074961","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:192228050:192233503:1 gene:ENSRNOG00000045839 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",13.92,14.63,13.85,13.26,13.31,13.58]
["TC0X00002634.rn.1",6.76,8.44,-3.204,"down",0.0117874858319695,0.0181541285918204,"NONMMUG045148","Non-coding transcript identified by NONCODE: Linc","chrX","-","MTA_TR0X00002074.mm","Noncoding",156416610,156420244,30,null,"NA","MTA_TR0X00002074.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",6.85,6.64,6.79,8.17,8.38,8.78]
["TC0X00001652.rn.1",6.87,7.28,-1.329,"down",0.0118123095053386,0.0181794656168368,"ENSMUSG00000084022","predicted gene 16459, pyruvate kinase, muscle (Pkm2) pseudogene","chrX","-","MTA_TR0X00004566.mm","Pseudogene",33583640,33584250,30,null,"NA","MTA_TR0X00004566.mm","MTA2Rn6","predicted gene 16459, pyruvate kinase, muscle (Pkm2) pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",6.98,7.05,6.59,7.24,7.4,7.21]
["TC0600002847.rn.1",3.9,3.62,1.214,"up",0.0118251408700749,0.0181888801679962,"MGI:5011512","PREDICTED:  predicted gene, 19327 (Gm19327), miscRNA.","chr6","-","MTA_TR1200005778.mm","Noncoding",107668372,107671923,30,null,"NA","MTA_TR1200005778.mm","MTA2Rn6","PREDICTED:  predicted gene, 19327 (Gm19327), miscRNA.","chr6",100,100,{"$nulls":24},"NonCoding",3.98,3.87,3.85,3.62,3.67,3.56]
["TC1400001198.rn.1",10.64,11.1,-1.376,"down",0.0118257562959731,0.0181888801679962,null,null,"chr14","+",null,"Pseudogene",114614412,114615398,30,null,"NA","ENSRNOT00000007186","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:114282648:114283634:1 gene:ENSRNOG00000005414 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",10.77,10.83,10.31,11.04,11.22,11.03]
["TC0900000618.rn.1",6.53,7,-1.385,"down",0.0119045543003925,0.0182838692700815,"NONMMUG000606","Non-coding transcript identified by NONCODE: Linc","chr9","+","MTA_TR0100007452.mm","Noncoding",53574999,53575824,30,null,"NA","MTA_TR0100007452.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",6.63,6.55,6.42,6.78,7.15,7.07]
["TC0800003574.rn.1",3.67,4.07,-1.32,"down",0.0119054081695868,0.0182838692700815,"MGI:5011570","PREDICTED:  predicted gene, 19385 (Gm19385), miscRNA.","chr8","-","MTA_TR0900010661.mm","Noncoding",129525386,129532276,30,null,"NA","MTA_TR0900010661.mm","MTA2Rn6","PREDICTED:  predicted gene, 19385 (Gm19385), miscRNA.","chr8",100,100,{"$nulls":24},"NonCoding",3.5,3.75,3.75,3.93,4.22,4.05]
["TC1500002050.rn.1",4.18,4.59,-1.329,"down",0.0119889724275762,0.0183788881608056,"NONMMUG013424","Non-coding transcript identified by NONCODE: Antisense","chr15","-","MTA_TR1400007474.mm","Noncoding",56668485,56669476,30,null,"NA","MTA_TR1400007474.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr15",100,100,{"$nulls":24},"NonCoding",4.2,4.33,4.02,4.65,4.75,4.37]
["TC1600000068.rn.1",7.39,6.81,1.495,"up",0.0119926806765121,0.0183805237366942,null,null,"chr16","+",null,"Pseudogene",5998592,5999070,30,null,"NA","ENSRNOT00000048438","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:5930388:5930866:1 gene:ENSRNOG00000031826 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",7.27,7.79,7.11,6.71,6.73,6.99]
["TC0400001367.rn.1",6.45,7.07,-1.537,"down",0.0120197514623619,0.0184063168314512,"KnowTID_00006147","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0600003519.mm","Noncoding",120468149,120469106,30,null,"NA","MTA_TR0600003519.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",6.65,6.05,6.65,7.12,7.21,6.89]
["TC1300000440.rn.1",14.47,13.44,2.042,"up",0.0120220522171412,0.0184063168314512,null,null,"chr13","+",null,"Pseudogene",66246820,66248453,30,null,"NA","ENSRNOT00000073364","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:71219989:71221622:1 gene:ENSRNOG00000050813 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",14.29,15.11,14.02,13.12,13.25,13.94]
["TC1600001481.rn.1",3.68,4.01,-1.257,"down",0.0120673482581894,0.0184483928371577,"NONMMUG040729","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","-","MTA_TR0800001965.mm","Noncoding",25825563,25828309,30,null,"NA","MTA_TR0800001965.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",3.71,3.69,3.64,3.85,3.98,4.19]
["TC0100004551.rn.1",6.12,4.83,2.445,"up",0.0120806090792992,0.0184566631764737,null,null,"chr1","-",null,"Noncoding",55708681,55709225,30,null,"NA","NONRATT004334","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",5.99,6.7,5.66,4.71,4.83,4.96]
["TC0900002673.rn.1",6.79,8.79,-4,"down",0.0121654689071744,0.0185552824278042,"NONMMUG018807","Non-coding transcript identified by NONCODE: Antisense","chr9","-","MTA_TR1700008999.mm","Noncoding",119157832,119161927,30,null,"NA","MTA_TR1700008999.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr9",100,100,{"$nulls":24},"NonCoding",6.82,6.71,6.83,8.9,8.62,8.85]
["TC0600001253.rn.1",5.19,6.56,-2.585,"down",0.0121833664529194,0.0185728177844373,"NONMMUG009638","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200002618.mm","Noncoding",112800754,112804471,30,null,"NA","MTA_TR1200002618.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",5.24,4.82,5.52,6.09,6.24,7.35]
["TC0700001133.rn.1",5.49,4.91,1.495,"up",0.0122569357425126,0.0186620414394939,"LOC102552118","uncharacterized LOC102552118","chr7","+","mRNARGD7726106_1","Noncoding",95673589,95674924,30,null,"NA","mRNARGD7726106_1","Rat Genome Database","uncharacterized LOC102552118","chr7",100,100,{"$nulls":24},"NonCoding",5.49,5.65,5.32,4.98,4.81,4.94]
["TC0200003029.rn.1",4.98,5.65,-1.591,"down",0.0122734159387431,0.01867567521653,"KnowTID_00002884","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR1500003660.mm","Noncoding",56423694,56426237,30,null,"NA","MTA_TR1500003660.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",5.07,4.89,4.97,5.82,5.67,5.45]
["TC0300000125.rn.1",5.55,6.01,-1.376,"down",0.0123144804157925,0.0187184843632072,"LOC502613","endosulfine alpha","chr3","+","ENSRNOT00000074467","Pseudogene",5431329,5434479,49,"2q34",60334,"ENSRNOT00000074467","ENSEMBL","ensembl:known chromosome:Rnor_5.0:3:10794216:10796389:1 gene:ENSRNOG00000047465 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,"ENSRNOT00000074467","P60841","ENSRNOT00000074467","Rn.27154","adipose tissue| adrenal gland| brain| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| muscle| ovary| pituitary gland| placenta| prostate| spleen| metamorphosing embryo| juvenile| adult","ENSRNOT00000074467","GO:0000086","G2/M transition of mitotic cell cycle","inferred from sequence or structural similarity","ENSRNOT00000074467","GO:0005737","cytoplasm","inferred from direct assay","ENSRNOT00000074467","GO:0004864","protein phosphatase inhibitor activity","inferred from electronic annotation",{"$nulls":7},"Pseudogene",5.59,5.59,5.46,5.95,6.2,5.88]
["TC1900000685.rn.1",5.58,4.9,1.602,"up",0.0123487867602877,0.0187591407794454,"NONMMUG041719","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19","+","MTA_TR0800004621.mm","Noncoding",49793253,49795892,30,null,"NA","MTA_TR0800004621.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19",100,100,{"$nulls":24},"NonCoding",5.26,5.57,5.9,4.75,4.73,5.21]
["TC1500001341.rn.1",3.06,3.42,-1.283,"down",0.0123886094431715,0.0188031921919906,"KnowTID_00002249","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15","-","MTA_TR1400000401.mm","Noncoding",11207781,11210419,30,null,"NA","MTA_TR1400000401.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",2.87,3.27,3.04,3.34,3.39,3.52]
["TC0800001338.rn.1",3.54,3.87,-1.257,"down",0.0123978698380126,0.0188123162959571,"chapor","Unannotated AceView Transcript","chr8","+","chapor.aSep08","Noncoding",104600999,104611870,60,null,"NA","chapor.aSep08","Ace View","Unannotated AceView Transcript","chr8",100,100,{"$nulls":24},"NonCoding",3.43,3.6,3.6,3.73,4.01,3.86]
["TC0900002432.rn.1",4.07,3.71,1.283,"up",0.0124217126366988,0.0188336885931828,"LOC102554285","uncharacterized LOC102554285","chr9","-","mRNARGD7559355_1","Noncoding",95794604,95798538,50,null,"NA","mRNARGD7559355_1","Rat Genome Database","uncharacterized LOC102554285","chr9",100,100,{"$nulls":24},"NonCoding",4.15,4.23,3.84,3.76,3.76,3.62]
["TC2000000487.rn.1",16.52,15.45,2.099,"up",0.0124367319249731,0.0188465907937458,null,null,"chr20","+",null,"Pseudogene",16441171,16443413,30,null,"NA","ENSRNOT00000071438","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:18623008:18625250:1 gene:ENSRNOG00000048683 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",16.2,17.2,16.17,15.12,15.28,15.94]
["TC1500001411.rn.1",6.55,8.19,-3.117,"down",0.0124794670051153,0.0188866371620368,"MGI:5012534","PREDICTED:  predicted gene, 20349 (Gm20349), miscRNA.","chr15","-","MTA_TR1400000277.mm","Noncoding",18399641,18411260,30,null,"NA","MTA_TR1400000277.mm","MTA2Rn6","PREDICTED:  predicted gene, 20349 (Gm20349), miscRNA.","chr15",100,100,{"$nulls":24},"NonCoding",6.35,6.35,6.95,8.63,8.46,7.49]
["TC1100000098.rn.1",4.75,4.24,1.424,"up",0.0125272191885134,0.0189280522905306,"NONMMUG016968","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003006.mm","Noncoding",15850255,15852036,30,null,"NA","MTA_TR1600003006.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",4.7,4.7,4.86,4.09,4.17,4.45]
["TC0900001183.rn.1",5.97,5.63,1.266,"up",0.0125512392534723,0.0189473865535819,"NONMMUG001410","Non-coding transcript identified by NONCODE: Linc","chr9","+","MTA_TR0100003094.mm","Noncoding",100794951,100795124,30,null,"NA","MTA_TR0100003094.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",6.09,5.99,5.84,5.67,5.65,5.58]
["TC1700000931.rn.1",4.27,3.81,1.376,"up",0.0125715037567952,0.0189684484162455,"LOC102552738","uncharacterized LOC102552738","chr17","+","mRNARGD7497437_1","Noncoding",70979003,70982830,30,null,"NA","mRNARGD7497437_1","Rat Genome Database","uncharacterized LOC102552738","chr17",100,100,{"$nulls":24},"NonCoding",4.23,4.41,4.18,3.63,3.77,4.02]
["TC1100001697.rn.1",16.15,15.32,1.778,"up",0.0125745352287025,0.0189693661708894,"pubar","Unannotated AceView Transcript","chr11","-","pubar.aSep08-unspliced","Pseudogene",68060379,68065900,50,null,"NA","pubar.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr11",100,100,{"$nulls":24},"Pseudogene",15.9,16.71,15.84,15.18,15.29,15.5]
["TC0200000646.rn.1",5.42,7,-2.99,"down",0.0125762077217642,0.0189702417796775,"NONMMUG014146","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR1500000447.mm","Noncoding",74194219,74195874,30,null,"NA","MTA_TR1500000447.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.3,5.38,5.59,6.78,6.63,7.59]
["TC0500002381.rn.1",6.52,5.17,2.549,"up",0.0126422584195208,0.0190405309862676,null,null,"chr5","-",null,"Pseudogene",33560921,33561164,30,null,"NA","ENSRNOT00000042468","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:38215325:38215568:-1 gene:ENSRNOG00000045881 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",6.11,6.92,6.52,4.61,4.97,5.92]
["TC0300002391.rn.1",4.02,4.59,-1.485,"down",0.0126580397223938,0.0190523185181269,"NONMMUG025601","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200009017.mm","Noncoding",165026941,165027787,30,null,"NA","MTA_TR0200009017.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",4.15,3.94,3.97,4.97,4.21,4.58]
["TC1300001001.rn.1",2.99,3.27,-1.214,"down",0.0127083673465717,0.0191079063357964,"NONMMUG002753","Non-coding transcript identified by NONCODE: Antisense","chr13","+","MTA_TR0100005898.mm","Noncoding",105562145,105564067,30,null,"NA","MTA_TR0100005898.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr13",100,100,{"$nulls":24},"NonCoding",2.92,2.94,3.12,3.36,3.15,3.3]
["TC0800001266.rn.1",4.77,4.14,1.548,"up",0.012718639652641,0.0191153737156971,"KnowTID_00007552","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900003624.mm","Noncoding",96618926,96619917,30,null,"NA","MTA_TR0900003624.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",5.24,4.64,4.44,3.99,4.15,4.27]
["TC0500001390.rn.1",10.24,9.75,1.404,"up",0.0127607236062162,0.0191521107450822,"LOC680775","similar to protein tyrosine kinase 9","chr5","+","ENSRNOT00000016814","Pseudogene",140479907,140487171,36,"5q36",680775,"ENSRNOT00000016814","ENSEMBL","ensembl:known chromosome:Rnor_5.0:5:144276852:144277908:1 gene:ENSRNOG00000012595 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,null,null,"ENSRNOT00000016814","Rn.232355","brain| kidney| liver| vibrissa| metamorphosing embryo| juvenile",{"$nulls":19},"Pseudogene",10.27,10.33,10.12,9.48,9.75,10.01]
["TC0700000424.rn.1",3.46,3.17,1.223,"up",0.0127867882549025,0.0191778772529655,"NONMMUG004231","Non-coding transcript identified by NONCODE: Antisense","chr7","+","MTA_TR1000008253.mm","Noncoding",26975235,26982637,22,null,"NA","MTA_TR1000008253.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",3.49,3.54,3.36,3.12,3.21,3.19]
["TC0600001158.rn.1",4.54,5.27,-1.659,"down",0.0128280401941346,0.0192160283389551,"NONMMUG009521","Non-coding transcript identified by NONCODE: Antisense","chr6","+","MTA_TR1200002246.mm","Noncoding",107678362,107680949,41,null,"NA","MTA_TR1200002246.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",4.23,4.63,4.76,5.69,5.3,4.81]
["TC0100000525.rn.1",6.24,6.71,-1.385,"down",0.0128374234115788,0.0192240415588393,null,null,"chr1","+",null,"Pseudogene",49961375,49962375,30,null,"NA","ENSRNOT00000040308","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:49791728:49792728:-1 gene:ENSRNOG00000030165 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",6.36,6.24,6.13,6.59,6.94,6.61]
["TC2000001772.rn.1",5.8,6.09,-1.223,"down",0.0128593545393533,0.0192424448654236,null,null,"chr20","-",null,"Pseudogene",50598198,50598679,30,null,"NA","ENSRNOT00000044230","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:52206877:52207358:-1 gene:ENSRNOG00000030678 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",5.85,5.81,5.75,6.25,6.02,5.99]
["TC0700002899.rn.1",3.53,3.24,1.223,"up",0.012860790103481,0.0192424448654236,null,null,"chr7","-",null,"Noncoding",70222998,70232731,30,null,"NA","NONRATT051487","NONCODE","Non-coding transcript identified by NONCODE","chr7",100,100,{"$nulls":24},"NonCoding",3.56,3.67,3.37,3.27,3.17,3.27]
["TC1800000054.rn.1",16.77,16.11,1.58,"up",0.0129572882224942,0.019348495978075,null,null,"chr18","+",null,"Pseudogene",4532554,4535833,30,null,"NA","ENSRNOT00000072613","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:4515250:4518529:1 gene:ENSRNOG00000046916 gene_biotype:pseudogene transcript_biotype:pseudogene","chr18",100,100,{"$nulls":24},"Pseudogene",16.55,17.28,16.48,16.1,16.14,16.09]
["TC1700001472.rn.1",3.93,3.58,1.275,"up",0.0129876992516282,0.0193821296705258,"NONMMUG010900","Non-coding transcript identified by NONCODE: Linc","chr17","-","MTA_TR1300001468.mm","Noncoding",17594909,17595504,17,null,"NA","MTA_TR1300001468.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",4.09,3.92,3.79,3.7,3.38,3.67]
["TC0100001814.rn.1",3.15,2.87,1.214,"up",0.0130000124855007,0.0193929521448886,"KnowTID_00006581","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR0700003996.mm","Noncoding",140351186,140353565,30,null,"NA","MTA_TR0700003996.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",3.26,3.19,3,2.99,2.85,2.76]
["TC0600002413.rn.1",3.64,3.92,-1.214,"down",0.0130296964989106,0.0194182273406465,"NONMMUG008933","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr6","-","MTA_TR1200004755.mm","Noncoding",69955856,69969537,30,null,"NA","MTA_TR1200004755.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr6",100,100,{"$nulls":24},"NonCoding",3.59,3.54,3.78,3.99,3.78,3.98]
["TC0600003184.rn.1",9.42,8.7,1.647,"up",0.0130380409025555,0.0194256633088851,"LOC102547175","uncharacterized LOC102547175","chr6","-","mRNARGD7496781_1","Noncoding",134838357,134839708,30,null,"NA","mRNARGD7496781_1","Rat Genome Database","uncharacterized LOC102547175","chr6",100,100,{"$nulls":24},"NonCoding",9.12,9.65,9.49,8.65,8.83,8.61]
["TC0100005223.rn.1",3.85,3.46,1.31,"up",0.0130574178786106,0.019442860103664,"NONMMUG037741","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR0700010236.mm","Noncoding",91299548,91310741,30,null,"NA","MTA_TR0700010236.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",3.9,3.71,3.93,3.64,3.33,3.4]
["TC0700001513.rn.1",4.1,4.63,-1.444,"down",0.0130784271343536,0.0194596332515228,"LOC102556137","uncharacterized LOC102556137","chr7","+","mRNARGD7534162_1","Noncoding",123229873,123232229,30,null,"NA","mRNARGD7534162_1","Rat Genome Database","uncharacterized LOC102556137","chr7",100,100,{"$nulls":24},"NonCoding",3.81,4.27,4.22,4.6,4.43,4.87]
["TC0100002077.rn.1",5.51,6.01,-1.414,"down",0.0131383277778704,0.0195290977010066,"RGD1562118","INTERACTS WITH ammonium chloride","chr1","+","mRNARGD6666545_1","Pseudogene",162393854,162401440,30,null,"NA","mRNARGD6666545_1","Rat Genome Database","INTERACTS WITH ammonium chloride","chr1",100,100,{"$nulls":24},"Pseudogene",5.39,5.46,5.68,6.29,5.85,5.9]
["TC1800000211.rn.1",7.78,9.9,-4.347,"down",0.0131473745878724,0.0195366162502935,"NCBI_Gene:100861703","PREDICTED:  uncharacterized LOC100861703 (LOC100861703), miscRNA.","chr18","+","MTA_TR1800000617.mm","Noncoding",24172592,24181136,30,null,"NA","MTA_TR1800000617.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861703 (LOC100861703), miscRNA.","chr18",100,100,{"$nulls":24},"NonCoding",7.73,7.58,8.02,9.77,10.27,9.67]
["TC0500002775.rn.1",15.09,14.71,1.301,"up",0.0131650198527585,0.0195518930255328,null,null,"chr5","-",null,"Noncoding",72107199,72107313,30,null,"NA","NONRATT044823","NONCODE","Non-coding transcript identified by NONCODE","chr5",100,100,{"$nulls":24},"NonCoding",15.02,15.34,14.9,14.63,14.68,14.81]
["TC0300004222.rn.1",9.43,8.39,2.056,"up",0.0131866377504205,0.0195765391302072,"NONMMUG024768","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200016624.mm","Noncoding",125195383,125198153,30,null,"NA","MTA_TR0200016624.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",8.91,9.82,9.56,7.91,8.23,9.02]
["TC0X00000905.rn.1",15.14,13.92,2.329,"up",0.0132308715297772,0.0196284692697123,null,null,"chrX","+",null,"Noncoding",106530842,106531914,30,null,"NA","NONRATT059929","NONCODE","Non-coding transcript identified by NONCODE","chrX",100,100,{"$nulls":24},"NonCoding",14.82,15.87,14.73,13.89,13.54,14.33]
["TC0X00002485.rn.1",6.3,6.9,-1.516,"down",0.0132718221511917,0.0196727385091178,"NONMMUG044889","Non-coding transcript identified by NONCODE: Linc","chrX","-","MTA_TR0X00006176.mm","Noncoding",139352263,139354011,60,null,"NA","MTA_TR0X00006176.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",6.12,6.36,6.41,7.27,6.63,6.81]
["TC0300002360.rn.1",4.59,4.93,-1.266,"down",0.0132832429829237,0.0196814903362514,"LOC102552303","uncharacterized LOC102552303","chr3","+","mRNARGD7657555_1","Noncoding",163936098,163950016,50,null,"NA","mRNARGD7657555_1","Rat Genome Database","uncharacterized LOC102552303","chr3",100,100,{"$nulls":24},"NonCoding",4.38,4.69,4.69,4.96,5.02,4.81]
["TC1600000877.rn.1",4.05,4.34,-1.223,"down",0.0133339757272205,0.0197361783923371,"KnowTID_00007189","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16","+","MTA_TR0800005972.mm","Noncoding",74496662,74497525,30,null,"NA","MTA_TR0800005972.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",4.15,4.05,3.95,4.38,4.28,4.37]
["TC0100003985.rn.1",4.52,5.06,-1.454,"down",0.0133781004139736,0.0197791951687182,"LOC100911063","cytochrome c-like","chr1","-","mRNARGD6495463_1","Pseudogene",3674526,3678941,30,null,"NA","mRNARGD6495463_1","Rat Genome Database","cytochrome c-like","chr1",100,100,{"$nulls":24},"Pseudogene",4.34,4.6,4.62,5.29,4.69,5.19]
["TC1300001820.rn.1",4.35,3.67,1.602,"up",0.0134090841379792,0.019798487085494,"LOC102546907","uncharacterized LOC102546907","chr13","-","mRNARGD7683186_1","Noncoding",83335166,83346286,30,null,"NA","mRNARGD7683186_1","Rat Genome Database","uncharacterized LOC102546907","chr13",100,100,{"$nulls":24},"NonCoding",3.84,4.79,4.43,3.75,3.67,3.6]
["TC1500001864.rn.1",3.26,3.55,-1.223,"down",0.013462276993636,0.0198550869125871,"NONMMUG013255","Non-coding transcript identified by NONCODE: Antisense","chr15","-","MTA_TR1400007085.mm","Noncoding",43298790,43300271,30,null,"NA","MTA_TR1400007085.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr15",100,100,{"$nulls":24},"NonCoding",3.28,3.36,3.15,3.5,3.46,3.7]
["TC0700000976.rn.1",12.21,12.92,-1.636,"down",0.0134964033930075,0.0198897238730101,"NCBI_Gene:100505062","PREDICTED:  uncharacterized LOC100505062 (LOC100505062), miscRNA.","chr7","+","MTA_TR1500000752.mm","Noncoding",75574828,75578450,30,null,"NA","MTA_TR1500000752.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100505062 (LOC100505062), miscRNA.","chr7",100,100,{"$nulls":24},"NonCoding",12.28,12.09,12.25,13.04,12.92,12.81]
["TC0500003710.rn.1",13.76,13.27,1.404,"up",0.0135370219298288,0.0199260406213656,"LOC102556006","uncharacterized LOC102556006","chr5","-","mRNARGD7657275_1","Noncoding",148795042,148800647,30,null,"NA","mRNARGD7657275_1","Rat Genome Database","uncharacterized LOC102556006","chr5",100,100,{"$nulls":24},"NonCoding",13.78,13.75,13.75,13.21,13.42,13.18]
["TC0100005278.rn.1",3.5,3.88,-1.301,"down",0.0135614146142231,0.0199454181071602,"LOC102548065","uncharacterized LOC102548065","chr1","-","mRNARGD7588671_1","Noncoding",94799415,94801134,30,null,"NA","mRNARGD7588671_1","Rat Genome Database","uncharacterized LOC102548065","chr1",100,100,{"$nulls":24},"NonCoding",3.58,3.52,3.39,3.75,3.76,4.12]
["TC0X00002448.rn.1",4.82,3.99,1.778,"up",0.0135791429651038,0.0199572676046758,"NONMMUG044843","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00006001.mm","Noncoding",135272624,135274250,30,null,"NA","MTA_TR0X00006001.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",4.52,4.85,5.1,4.34,3.93,3.69]
["TC0700002662.rn.1",8.78,9.09,-1.24,"down",0.0136365402123334,0.0200152378562267,"LOC102552184","uncharacterized LOC102552184","chr7","-","mRNARGD7612147_1","Noncoding",51315536,51315888,30,null,"NA","mRNARGD7612147_1","Rat Genome Database","uncharacterized LOC102552184","chr7",100,100,{"$nulls":24},"NonCoding",8.69,8.82,8.82,9.09,9.28,8.9]
["TC1700000821.rn.1",5.95,5.39,1.474,"up",0.013697711446936,0.0200812680854693,null,null,"chr17","+",null,"Pseudogene",57848800,57849375,30,null,"NA","ENSRNOT00000072161","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:59656900:59657477:1 gene:ENSRNOG00000049169 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",6.02,5.83,6.01,5.46,5.7,5.01]
["TC1800001838.rn.1",4.06,4.51,-1.366,"down",0.0137174433523466,0.0200983222396772,"NONMMUG020525","Non-coding transcript identified by NONCODE: Antisense","chr18","-","MTA_TR1800005111.mm","Noncoding",83554466,83556872,30,null,"NA","MTA_TR1800005111.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr18",100,100,{"$nulls":24},"NonCoding",4.2,4.04,3.95,4.52,4.29,4.73]
["TC1100000658.rn.1",3.32,2.94,1.301,"up",0.0137485320392949,0.0201252093297399,"LOC102552331","uncharacterized LOC102552331","chr11","+","mRNARGD7723712_1","Noncoding",65713108,65714765,30,null,"NA","mRNARGD7723712_1","Rat Genome Database","uncharacterized LOC102552331","chr11",100,100,{"$nulls":24},"NonCoding",3.32,3.53,3.12,2.79,3.04,2.99]
["TC0200002034.rn.1",3.87,4.29,-1.338,"down",0.0137804579179203,0.0201609103970402,"NONMMUG027705","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300004041.mm","Noncoding",217904650,217906332,30,null,"NA","MTA_TR0300004041.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",3.93,3.8,3.89,4.36,4.12,4.38]
["TC0800001578.rn.1",4.84,4.3,1.454,"up",0.0137922003420966,0.0201721236122388,"NONMMUG043993","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","+","MTA_TR0900004707.mm","Noncoding",118042268,118046156,30,null,"NA","MTA_TR0900004707.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",4.74,4.74,5.05,4.4,4.28,4.21]
["TC0500000812.rn.1",14.75,14.2,1.464,"up",0.0138245587920208,0.0202143443414304,null,null,"chr5","+",null,"Noncoding",86862678,86862991,30,null,"NA","NONRATT043086","NONCODE","Non-coding transcript identified by NONCODE","chr5",100,100,{"$nulls":24},"NonCoding",14.66,15,14.58,14.2,14.27,14.13]
["TC1100001269.rn.1",3.72,3.42,1.231,"up",0.0138746671907366,0.020265437128587,"LOC102552519","uncharacterized LOC102552519","chr11","-","mRNARGD7513905_1","Noncoding",29817693,29833925,50,null,"NA","mRNARGD7513905_1","Rat Genome Database","uncharacterized LOC102552519","chr11",100,100,{"$nulls":24},"NonCoding",3.68,3.81,3.68,3.37,3.41,3.48]
["TC1800001862.rn.1",7.74,6.58,2.235,"up",0.0139484164774738,0.0203406600596203,null,null,"chr18","-",null,"Pseudogene",87844861,87845927,30,null,"NA","ENSRNOT00000072085","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:18:86874476:86875542:-1 gene:ENSRNOG00000050449 gene_biotype:pseudogene transcript_biotype:pseudogene","chr18",100,100,{"$nulls":24},"Pseudogene",7.49,8.49,7.25,6.47,6.81,6.47]
["TC0500000237.rn.1",11.48,12.01,-1.444,"down",0.0139533324238545,0.0203427056260828,null,null,"chr5","+",null,"Pseudogene",27104008,27105014,30,null,"NA","ENSRNOT00000007460","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:31796955:31797961:1 gene:ENSRNOG00000005638 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",11.64,11.56,11.25,11.96,12.3,11.78]
["TC1400000041.rn.1",4.12,4.61,-1.404,"down",0.0140128852461425,0.0204072627104914,"KnowTID_00005928","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR0500010257.mm","Noncoding",2394110,2395026,30,null,"NA","MTA_TR0500010257.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",4.25,3.85,4.27,4.46,4.51,4.86]
["TC0500000881.rn.1",5.08,4.61,1.385,"up",0.0140229460152508,0.0204116469943792,"NONMMUG029699","Non-coding transcript identified by NONCODE: Antisense","chr5","+","MTA_TR0400002442.mm","Noncoding",101579613,101581078,30,null,"NA","MTA_TR0400002442.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",4.97,5.23,5.05,4.82,4.38,4.64]
["TC1400002274.rn.1",15.49,14.12,2.585,"up",0.0140389567340925,0.0204246832016684,null,null,"chr14","-",null,"Pseudogene",99787729,99788111,30,null,"NA","ENSRNOT00000071355","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:99060562:99060944:1 gene:ENSRNOG00000051014 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",15.24,15.89,15.33,13.63,13.94,14.79]
["TC1300001813.rn.1",3.76,4.13,-1.292,"down",0.0140432325265267,0.0204275444876642,"NONMMUG002299","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr13","-","MTA_TR0100010948.mm","Noncoding",83134685,83136786,30,null,"NA","MTA_TR0100010948.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr13",100,100,{"$nulls":24},"NonCoding",3.85,3.6,3.82,3.95,4.36,4.09]
["TC1000002996.rn.1",3.18,3.6,-1.338,"down",0.014063518655262,0.0204503030526915,"NONMMUG006408","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr10","-","MTA_TR1100011051.mm","Noncoding",50112587,50114144,21,null,"NA","MTA_TR1100011051.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr10",100,100,{"$nulls":24},"NonCoding",3.07,3.08,3.39,3.84,3.39,3.56]
["TC0800001918.rn.1",5.43,6.21,-1.717,"down",0.0140924742333519,0.0204784463284588,"NONMMUG042103","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","-","MTA_TR0900005676.mm","Noncoding",8739625,8740747,30,null,"NA","MTA_TR0900005676.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",5.57,5.47,5.25,6.25,6.24,6.13]
["TC0700003342.rn.1",5.68,8.34,-6.32,"down",0.0141570457337762,0.0205444792367559,"NONMMUG014782","Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1500005089.mm","Noncoding",116066483,116068535,30,null,"NA","MTA_TR1500005089.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",5.49,5.72,5.82,7.32,7.9,9.8]
["TC0200000008.rn.1",8.03,7.06,1.959,"up",0.0141579621750737,0.0205444792367559,"NONMMUG011418","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1300002508.mm","Noncoding",1451979,1453258,30,null,"NA","MTA_TR1300002508.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",7.97,8.2,7.91,7.24,7.06,6.88]
["TC0700000387.rn.1",4.56,4.86,-1.231,"down",0.0142274410593716,0.0206266649577862,"NONMMUG004282","Non-coding transcript identified by NONCODE: Antisense","chr7","+","MTA_TR1000008340.mm","Noncoding",24312951,24316245,30,null,"NA","MTA_TR1000008340.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",4.64,4.53,4.5,4.93,4.93,4.71]
["TC1700000530.rn.1",5.16,4.52,1.558,"up",0.0142523091652626,0.0206503346826071,"NONMMUG010609","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","+","MTA_TR1300004734.mm","Noncoding",35413108,35417640,30,null,"NA","MTA_TR1300004734.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",5.21,5.19,5.08,4.56,4.29,4.71]
["TC1500000870.rn.1",3.81,4.15,-1.266,"down",0.0142864356781575,0.0206911517563177,"KnowTID_00002361","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15","+","MTA_TR1400003566.mm","Noncoding",58919083,58921348,30,null,"NA","MTA_TR1400003566.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",3.59,3.82,4.01,4.18,4.22,4.04]
["TC1300000662.rn.1",2.98,3.3,-1.248,"down",0.0143048375729375,0.0207126226122778,"NONMMUG002302","Non-coding transcript identified by NONCODE: Linc","chr13","+","MTA_TR0100004961.mm","Noncoding",83228365,83230375,40,null,"NA","MTA_TR0100004961.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr13",100,100,{"$nulls":24},"NonCoding",2.92,3,3.02,3.43,3.32,3.14]
["TC0700000479.rn.1",4.01,4.48,-1.385,"down",0.0143238147104213,0.0207331876789208,"NONMMUG004361","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","+","MTA_TR1000003561.mm","Noncoding",31052690,31054798,30,null,"NA","MTA_TR1000003561.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",4.11,3.86,4.05,4.25,4.56,4.62]
["TC1700000794.rn.1",5.21,4.79,1.338,"up",0.014377331069375,0.020783334707222,"KnowTID_00003908","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17","+","MTA_TR1800002920.mm","Noncoding",55178908,55191872,30,null,"NA","MTA_TR1800002920.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",5.26,5.36,5.01,4.69,4.95,4.72]
["TC1200000918.rn.1",11.77,7.1,25.457,"up",0.0144028491637358,0.0208042485301226,null,null,"chr12","-",null,"Noncoding",1510527,1511000,30,null,"NA","NONRATT015286","NONCODE","Non-coding transcript identified by NONCODE","chr12",100,100,{"$nulls":24},"NonCoding",11.11,13.35,10.84,6.09,7.37,7.84]
["TC0500000324.rn.1",3.63,4.4,-1.705,"down",0.0144167270031547,0.0208178595087413,"NONMMUG028696","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr5","+","MTA_TR0400007897.mm","Noncoding",38127500,38130396,30,null,"NA","MTA_TR0400007897.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr5",100,100,{"$nulls":24},"NonCoding",3.78,3.71,3.4,3.9,4.39,4.9]
["TC1000003145.rn.1",17.08,16.07,2.014,"up",0.0144785960899761,0.0208824055694931,null,null,"chr10","-",null,"Noncoding",57576185,57576502,30,null,"NA","NONRATT011383","NONCODE","Non-coding transcript identified by NONCODE","chr10",100,100,{"$nulls":24},"NonCoding",17.12,17.07,17.04,15.5,16.13,16.58]
["TC1800000286.rn.1",7.75,8.53,-1.717,"down",0.0144831282630019,0.0208852107575412,"Snhg4","small nucleolar RNA host gene 4 (non-protein coding)","chr18","+","NR_038078","Noncoding",28354900,28356304,32,null,100568448,"NR_038078","RefSeq","Rattus norvegicus small nucleolar RNA host gene 4 (non-protein coding) (Snhg4), long non-coding RNA.","chr18",100,100,null,null,"NR_038078","Rn.229541","embryonic tissue| metamorphosing embryo",{"$nulls":19},"NonCoding",7.8,7.59,7.87,8.61,8.65,8.32]
["TC1300000900.rn.1",4.3,3.98,1.248,"up",0.0145816915901026,0.0209774742358847,"XLOC_011906","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr13","+","TCONS_00031383","Noncoding",98597579,98600948,30,null,"NA","TCONS_00031383","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr13",100,100,{"$nulls":24},"NonCoding",4.21,4.51,4.18,4.04,4,3.9]
["TC0100001628.rn.1",12.32,11.17,2.219,"up",0.0146399018755961,0.0210338807761929,null,null,"chr1","+",null,"Noncoding",118334847,118335373,30,null,"NA","NONRATT001467","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",12.27,12.68,12.02,10.82,10.97,11.72]
["TC0400002035.rn.1",4.92,4.57,1.275,"up",0.0147096737031576,0.0211140094114651,"NONMMUG036923","Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0600005714.mm","Noncoding",178755068,178755536,30,null,"NA","MTA_TR0600005714.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",4.93,5.15,4.69,4.65,4.49,4.56]
["TC0700002374.rn.1",5.82,7.3,-2.789,"down",0.0147853436610475,0.0211946034606417,"uc011xjx.1","non-coding RNA, oocyte_clustered_small_RNA1877, complete sequence.","chr7","-","MTA_TR1000003194.mm","Noncoding",26453682,26453709,4,null,"NA","MTA_TR1000003194.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA1877, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",4.97,6.09,6.39,7,8.19,6.7]
["TC1300001667.rn.1",15.83,14.94,1.853,"up",0.014820516377904,0.0212327579381914,null,null,"chr13","-",null,"Pseudogene",71664374,71665271,30,null,"NA","ENSRNOT00000004464","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:76614331:76615228:-1 gene:ENSRNOG00000003355 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",15.67,16.45,15.36,14.72,14.78,15.33]
["TC1000000341.rn.1",4.8,4.38,1.338,"up",0.0148403007692771,0.0212558430625917,"NONMMUG005739","Non-coding transcript identified by NONCODE: Antisense","chr10","+","MTA_TR1100001242.mm","Noncoding",19182864,19208463,30,null,"NA","MTA_TR1100001242.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",4.83,4.95,4.62,4.33,4.35,4.46]
["TC1500001840.rn.1",6.24,5.64,1.516,"up",0.0150162445392125,0.0214522315287537,"LOC100911441","40S ribosomal protein S20-like","chr15","-","mRNARGD6492605_1","Pseudogene",41730429,41731263,30,null,"NA","mRNARGD6492605_1","Rat Genome Database","40S ribosomal protein S20-like","chr15",100,100,{"$nulls":24},"Pseudogene",6.16,6.03,6.53,5.69,5.82,5.41]
["TC1000004189.rn.1",4.07,4.41,-1.266,"down",0.0150174675507113,0.0214522315287537,"NONMMUG008200","Non-coding transcript identified by NONCODE: Linc","chr10","-","MTA_TR1100015809.mm","Noncoding",106578142,106581796,30,null,"NA","MTA_TR1100015809.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",3.99,4.17,4.06,4.6,4.23,4.4]
["TC0400003478.rn.1",4.74,4.31,1.347,"up",0.0150788791834631,0.0215136291216134,"XLOC_034573","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4","-","TCONS_00084533","Noncoding",134158789,134183327,30,null,"NA","TCONS_00084533","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4",100,100,{"$nulls":24},"NonCoding",4.6,4.84,4.79,4.41,4.3,4.23]
["TC0900000431.rn.1",8.45,6.93,2.868,"up",0.0150805672826641,0.0215136291216134,"NONMMUG005185","Non-coding transcript identified by NONCODE: Linc","chr9","+","MTA_TR1100000302.mm","Noncoding",37980583,37982170,23,null,"NA","MTA_TR1100000302.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",8.14,8.49,8.73,6.17,6.41,8.2]
["TC1000003896.rn.1",5.21,5.73,-1.434,"down",0.0151987681856456,0.0216337104353367,"ENSMUSG00000092371","predicted gene 20511, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr10","-","MTA_TR1100014622.mm","Noncoding",91273509,91275635,30,null,"NA","MTA_TR1100014622.mm","MTA2Rn6","predicted gene 20511, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr10",100,100,{"$nulls":24},"NonCoding",5.37,4.96,5.3,5.58,5.62,6]
["TC1800000075.rn.1",4.73,4,1.659,"up",0.0152002202771309,0.021634004623846,"LOC102551724","uncharacterized LOC102551724","chr18","+","mRNARGD7583407_1","Noncoding",6625596,6692819,50,null,"NA","mRNARGD7583407_1","Rat Genome Database","uncharacterized LOC102551724","chr18",100,100,{"$nulls":24},"NonCoding",4.8,4.81,4.59,4.2,3.89,3.91]
["TC1900001233.rn.1",7.22,5.66,2.949,"up",0.0152677660127071,0.0217105732978663,"LOC102550390","uncharacterized LOC102550390","chr19","-","mRNARGD7698761_1","Noncoding",26978050,26980838,30,null,"NA","mRNARGD7698761_1","Rat Genome Database","uncharacterized LOC102550390","chr19",100,100,{"$nulls":24},"NonCoding",6.94,8.16,6.55,5.65,5.23,6.11]
["TC0400003030.rn.1",16.14,15.09,2.071,"up",0.0152864936715819,0.0217283104139636,null,null,"chr4","-",null,"Pseudogene",97655098,97656727,30,null,"NA","ENSRNOT00000073168","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:162440351:162441980:-1 gene:ENSRNOG00000048007 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",15.93,16.89,15.6,14.79,14.99,15.49]
["TC1600001504.rn.1",17.23,16.87,1.283,"up",0.0153056377193437,0.0217424380829811,null,null,"chr16","-",null,"Noncoding",30414672,30414774,30,null,"NA","NONRATT023245","NONCODE","Non-coding transcript identified by NONCODE","chr16",100,100,{"$nulls":24},"NonCoding",17.12,17.44,17.12,16.8,16.92,16.9]
["TC1000003243.rn.1",8.47,7.68,1.729,"up",0.015306446106544,0.0217424380829811,"ENSMUSG00000085359","predicted gene 12336, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr10","-","MTA_TR1100012099.mm","Noncoding",62254345,62255083,30,null,"NA","MTA_TR1100012099.mm","MTA2Rn6","predicted gene 12336, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr10",100,100,{"$nulls":24},"NonCoding",8.38,8.63,8.41,7.46,7.72,7.85]
["TC0600000722.rn.1",10.49,9.65,1.79,"up",0.0153471469905699,0.0217895619430478,null,null,"chr6","+",null,"Noncoding",66656547,66656917,30,null,"NA","NONRATT046731","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",10.4,10.61,10.47,9.36,9.45,10.14]
["TC0800002543.rn.1",6.03,6.42,-1.31,"down",0.0153742190139803,0.0218172991170535,"NONMMUG042791","Non-coding transcript identified by NONCODE: Linc","chr8","-","MTA_TR0900007378.mm","Noncoding",56635791,56638045,30,null,"NA","MTA_TR0900007378.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",6.1,5.8,6.18,6.21,6.58,6.48]
["TC0X00002086.rn.1",6.62,5.75,1.828,"up",0.0154430422244282,0.0218804090420586,"LOC681406","similar to 40S ribosomal protein S2","chrX","-","ENSRNOT00000003730","Pseudogene",81816355,81836726,40,"Xq31",681406,"ENSRNOT00000003730","ENSEMBL","ensembl:known chromosome:Rnor_5.0:X:81982713:81983416:-1 gene:ENSRNOG00000002789 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,null,null,"ENSRNOT00000003730","Rn.129777","adrenal gland| heart| pancreas",{"$nulls":19},"Pseudogene",6.98,6.44,6.44,6.24,5.58,5.44]
["TC1300001708.rn.1",6.42,5.65,1.705,"up",0.0154698192636202,0.0219082203186325,"XLOC_012138","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr13","-","TCONS_00032255","Noncoding",74972498,74974686,30,null,"NA","TCONS_00032255","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr13",100,100,{"$nulls":24},"NonCoding",6.2,6.22,6.83,5.57,5.25,6.13]
["TC0500002868.rn.1",4.74,4.28,1.376,"up",0.0155808102890197,0.0220294852295752,"NONMMUG029458","Non-coding transcript identified by NONCODE: Antisense","chr5","-","MTA_TR0400009557.mm","Noncoding",78131066,78132619,30,null,"NA","MTA_TR0400009557.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",4.73,4.64,4.84,4.27,3.98,4.6]
["TC1800000599.rn.1",4.34,4.86,-1.434,"down",0.0156092806977043,0.0220482041795269,"NONMMUG020031","Non-coding transcript identified by NONCODE: Linc","chr18","+","MTA_TR1800001766.mm","Noncoding",54503801,54505662,30,null,"NA","MTA_TR1800001766.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",4.46,4.1,4.46,4.77,4.62,5.19]
["TC0500003558.rn.1",6.93,7.84,-1.879,"down",0.0156494858603564,0.0220920846345401,"NONMMUG030546","Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400011869.mm","Noncoding",141529101,141529441,30,null,"NA","MTA_TR0400011869.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",7.37,6.96,6.46,7.86,8.23,7.43]
["TC0500001888.rn.1",9.04,7.99,2.071,"up",0.0156703987258468,0.022104637790308,"LOC100910223","zinc finger protein 761-like","chr5","+","mRNARGD6499451_1","Pseudogene",163865263,163902605,30,null,"NA","mRNARGD6499451_1","Rat Genome Database","zinc finger protein 761-like","chr5",100,100,{"$nulls":24},"Pseudogene",9.02,9.1,9.01,7.85,7.95,8.18]
["TC0400003840.rn.1",4.44,3.94,1.414,"up",0.0156759560726961,0.022104637790308,"LOC100911058","null","chr4","-","mRNARGD6495441_t00","Noncoding",162422447,162439616,50,null,"NA","mRNARGD6495441_t00","Rat Genome Database","null","chr4",100,100,{"$nulls":24},"NonCoding",4.26,4.4,4.66,3.98,3.97,3.86]
["TC0600002871.rn.1",4.02,3.49,1.444,"up",0.0156779500820062,0.0221056551034521,"NONMMUG009557","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","-","MTA_TR1200005900.mm","Noncoding",109188816,109193989,30,null,"NA","MTA_TR1200005900.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",3.8,4.3,3.96,3.74,3.33,3.41]
["TC0X00001770.rn.1",3.66,3.99,-1.257,"down",0.0157481913435266,0.0221651135819479,"ENSMUSG00000096919","predicted gene, 26775, Non-coding transcript identified by NONCODE: Antisense","chrX","-","MTA_TR0X00007092.mm","Noncoding",48779100,48781320,30,null,"NA","MTA_TR0X00007092.mm","MTA2Rn6","predicted gene, 26775, Non-coding transcript identified by NONCODE: Antisense","chrX",100,100,{"$nulls":24},"NonCoding",3.63,3.81,3.53,4.12,3.93,3.93]
["TC0200000455.rn.1",7.03,9.63,-6.063,"down",0.0157896349265781,0.0222126456356971,"NONMMUG012080","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1300003639.mm","Noncoding",50509021,50511302,30,null,"NA","MTA_TR1300003639.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",7.21,6.48,7.39,9.16,10.01,9.71]
["TC1300001925.rn.1",4.62,4,1.537,"up",0.0158639848524328,0.0222617170739914,"LOC100910361","60S ribosomal protein L31-like","chr13","-","mRNARGD6498909_1","Pseudogene",89987317,89988053,30,null,"NA","mRNARGD6498909_1","Rat Genome Database","60S ribosomal protein L31-like","chr13",100,100,{"$nulls":24},"Pseudogene",4.72,4.69,4.46,4.06,4,3.94]
["TC0300003429.rn.1",5.97,5.29,1.602,"up",0.0158655263010773,0.0222617170739914,"LOC680546","similar to 40S ribosomal protein S7 (S8)","chr3","-","LOC680546.aSep08-unspliced","Pseudogene",71837168,71837830,30,null,"NA","LOC680546.aSep08-unspliced","Ace View","similar to 40S ribosomal protein S7 (S8)","chr3",100,100,{"$nulls":24},"Pseudogene",6.1,6.03,5.79,5.29,5.47,5.12]
["TC0100000759.rn.1",3.71,3.27,1.357,"up",0.0159354692955706,0.0222878451798194,"Vom1r-ps55",null,"chr1","+",null,"Pseudogene",66748965,66749917,30,null,"NA","ENSRNOT00000038706","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:67549135:67550087:1 gene:ENSRNOG00000049720 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",3.49,4.03,3.62,3.25,3.41,3.15]
["TC0300001652.rn.1",7.61,7.02,1.505,"up",0.0159443134120224,0.0222931970128664,"Mtfr1-ps1","mitochondrial fission regulator 1, pseudogene 1","chr3","+","LOC679959.aSep08-unspliced","Pseudogene",119498679,119499805,30,null,"NA","LOC679959.aSep08-unspliced","Ace View","mitochondrial fission regulator 1, pseudogene 1","chr3",100,100,{"$nulls":24},"Pseudogene",7.51,7.52,7.81,6.99,6.99,7.08]
["TC1700001827.rn.1",5.02,4.29,1.659,"up",0.0159606878737115,0.0223051576069383,"uc007prp.1","non-coding RNA, oocyte_clustered_small_RNA8594, complete sequence.","chr17","-","MTA_TR1300000466.mm","Noncoding",44748482,44748862,30,null,"NA","MTA_TR1300000466.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA8594, complete sequence.","chr17",100,100,{"$nulls":24},"NonCoding",5.08,4.79,5.18,4.3,4.67,3.91]
["TC0600000820.rn.1",5.77,5,1.705,"up",0.0159689887006655,0.0223095787935709,"NONMMUG009073","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001351.mm","Noncoding",78175871,78178258,30,null,"NA","MTA_TR1200001351.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",5.64,6.03,5.64,5.48,4.48,5.05]
["TC0600001135.rn.1",3.79,4.18,-1.31,"down",0.015987287768447,0.0223249980603915,"Rgs6","uncharacterized LOC102553534","chr6","+","mRNARGD7696992_1","Noncoding",106557785,106564920,50,null,"NA","mRNARGD7696992_1","Rat Genome Database","uncharacterized LOC102553534","chr6",100,100,{"$nulls":24},"NonCoding",3.79,3.92,3.65,4.34,3.92,4.27]
["TC0200001385.rn.1",5.62,4.9,1.647,"up",0.0159926144533057,0.0223249980603915,"ENSMUSG00000098869","Metastasis associated lung adenocarcinoma transcript 1","chr2","+","MTA_TR0300001699.mm","Noncoding",169550892,169550982,30,null,"NA","MTA_TR0300001699.mm","MTA2Rn6","Metastasis associated lung adenocarcinoma transcript 1","chr2",100,100,{"$nulls":24},"NonCoding",5.81,5.69,5.36,4.9,4.65,5.16]
["TC0300002014.rn.1",2.97,3.33,-1.283,"down",0.0160407820865861,0.022357859460823,"uc008neo.1","predicted gene 14155","chr3","+","MTA_TR0200007542.mm","Noncoding",147344466,147347451,30,null,"NA","MTA_TR0200007542.mm","MTA2Rn6","predicted gene 14155","chr3",100,100,{"$nulls":24},"NonCoding",3.04,3.12,2.74,3.2,3.41,3.37]
["TC1800000273.rn.1",4.85,4.46,1.31,"up",0.0160642942304105,0.0223830844644205,"LOC102550732","uncharacterized LOC102550732","chr18","+","mRNARGD7615036_1","Noncoding",27677606,27680438,30,null,"NA","mRNARGD7615036_1","Rat Genome Database","uncharacterized LOC102550732","chr18",100,100,{"$nulls":24},"NonCoding",4.72,5.15,4.68,4.45,4.44,4.5]
["TC0900002414.rn.1",3.63,4.18,-1.464,"down",0.0160975002768901,0.0224170015480085,"MGI:2443097","PREDICTED:  RIKEN cDNA A530079E22 gene (A530079E22Rik), miscRNA.","chr9","-","MTA_TR0100008796.mm","Noncoding",94633390,94634744,30,null,"NA","MTA_TR0100008796.mm","MTA2Rn6","PREDICTED:  RIKEN cDNA A530079E22 gene (A530079E22Rik), miscRNA.","chr9",100,100,{"$nulls":24},"NonCoding",3.77,3.63,3.5,4.06,3.87,4.6]
["TC0300004445.rn.1",3.96,3.6,1.283,"up",0.0161518622559785,0.0224748407139126,"ENSMUSG00000067352","predicted gene 14149","chr3","-","MTA_TR0200007485.mm","Noncoding",146941652,146942121,30,null,"NA","MTA_TR0200007485.mm","MTA2Rn6","predicted gene 14149","chr3",100,100,{"$nulls":24},"NonCoding",4.12,4.05,3.71,3.48,3.58,3.74]
["TC1100001337.rn.1",4.7,4.33,1.292,"up",0.0161941966925746,0.0225083525961525,"NONMMUG017198","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","-","MTA_TR1600006883.mm","Noncoding",32890771,32892828,30,null,"NA","MTA_TR1600006883.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",4.69,4.63,4.78,4.27,4.27,4.45]
["TC0400000885.rn.1",11.13,11.69,-1.474,"down",0.0162086772370577,0.0225248745827943,"KnowTID_00001735","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR1300000224.mm","Noncoding",79228549,79228761,30,null,"NA","MTA_TR1300000224.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",10.99,11,11.39,11.85,11.84,11.39]
["TC0500002706.rn.1",4.35,3.73,1.537,"up",0.0162851391782096,0.0226094271630977,"LOC102551711","uncharacterized LOC102551711","chr5","-","mRNARGD7706452_1","Noncoding",64113989,64118735,30,null,"NA","mRNARGD7706452_1","Rat Genome Database","uncharacterized LOC102551711","chr5",100,100,{"$nulls":24},"NonCoding",4.25,4.56,4.25,3.94,3.55,3.71]
["TC2000001417.rn.1",17.29,16.77,1.434,"up",0.0163156144632283,0.0226390717182474,null,null,"chr20","-",null,"Pseudogene",20456483,20457488,30,null,"NA","ENSRNOT00000073977","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:22585794:22586799:-1 gene:ENSRNOG00000049023 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",17.07,17.67,17.13,16.83,16.88,16.59]
["TC1600000934.rn.1",6.25,7.55,-2.462,"down",0.0164123128895924,0.0227386491551879,"NONMMUG039980","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","+","MTA_TR0800005771.mm","Noncoding",77933467,77934164,30,null,"NA","MTA_TR0800005771.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",6.13,6.06,6.57,7.13,7.45,8.07]
["TC1400000121.rn.1",4.91,4.38,1.444,"up",0.0164138626929724,0.0227386491551879,"LOC102550753","uncharacterized LOC102550753","chr14","+","mRNARGD7727990_1","Noncoding",7220843,7225564,30,null,"NA","mRNARGD7727990_1","Rat Genome Database","uncharacterized LOC102550753","chr14",100,100,{"$nulls":24},"NonCoding",4.83,5.17,4.72,4.12,4.35,4.68]
["TC1500000650.rn.1",3.78,4.2,-1.338,"down",0.0165100601113299,0.022835914817574,"Adra1a","uncharacterized LOC102555616","chr15","+","mRNARGD7577458_1","Noncoding",43364060,43364856,30,null,"NA","mRNARGD7577458_1","Rat Genome Database","uncharacterized LOC102555616","chr15",100,100,{"$nulls":24},"NonCoding",3.78,3.89,3.67,3.97,4.52,4.12]
["TC0200001372.rn.1",4.88,5.48,-1.516,"down",0.0165363832820705,0.0228650413112192,"KnowTID_00004735","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR0300001688.mm","Noncoding",166432434,166435387,30,null,"NA","MTA_TR0300001688.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.93,4.8,4.9,5.33,5.71,5.4]
["TC1900001454.rn.1",3.85,3.34,1.424,"up",0.0165854258086074,0.0229146131966372,"NONMMUG041546","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19","-","MTA_TR0800004253.mm","Noncoding",42843293,42844980,30,null,"NA","MTA_TR0800004253.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19",100,100,{"$nulls":24},"NonCoding",3.91,3.86,3.78,3.59,2.92,3.5]
["TC0X00000591.rn.1",4.11,3.62,1.404,"up",0.0165898192944584,0.0229153873789244,"NONMMUG045456","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00002666.mm","Noncoding",69751495,69753521,30,null,"NA","MTA_TR0X00002666.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",3.9,4.3,4.14,3.7,3.43,3.73]
["TC0100006998.rn.1",3.77,4.57,-1.741,"down",0.0166357462708764,0.0229494558824169,"LOC102550317","uncharacterized LOC102550317","chr1","-","mRNARGD7738109_1","Noncoding",216375693,216379910,30,null,"NA","mRNARGD7738109_1","Rat Genome Database","uncharacterized LOC102550317","chr1",100,100,{"$nulls":24},"NonCoding",4.04,3.77,3.49,4.49,4.41,4.8]
["TC0700002011.rn.1",4.47,4.06,1.329,"up",0.0166624490209747,0.0229753454471624,"cherroy","Unannotated AceView Transcript","chr7","-","cherroy.aSep08","Noncoding",3316377,3332837,100,null,"NA","cherroy.aSep08","Ace View","Unannotated AceView Transcript","chr7",100,100,{"$nulls":24},"NonCoding",4.5,4.52,4.39,4.07,3.95,4.15]
["TC2000000755.rn.1",5.15,5.57,-1.338,"down",0.01677265374637,0.0230906457622597,null,null,"chr20","+",null,"Pseudogene",38045179,38046182,30,null,"NA","ENSRNOT00000045365","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:39781721:39782724:1 gene:ENSRNOG00000029603 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",5.14,5.36,4.94,5.61,5.72,5.37]
["TC1100001614.rn.1",5.91,5.21,1.625,"up",0.0167921398540248,0.0231083150918375,"NONMMUG016541","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","-","MTA_TR1600002380.mm","Noncoding",62223316,62226844,30,null,"NA","MTA_TR1600002380.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",5.86,5.75,6.13,5.09,4.85,5.68]
["TC0600002832.rn.1",4.82,4.15,1.591,"up",0.0168381494826714,0.0231496236377907,"NONMMUG009499","Non-coding transcript identified by NONCODE: Antisense","chr6","-","MTA_TR1200005722.mm","Noncoding",107121428,107122353,30,null,"NA","MTA_TR1200005722.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",5.04,4.71,4.71,3.93,3.93,4.59]
["TC1200000674.rn.1",3.45,3.86,-1.329,"down",0.0168458375954689,0.0231533488167723,"LOC102546702","uncharacterized LOC102546702","chr12","+","mRNARGD7719549_1","Noncoding",40970917,40980701,30,null,"NA","mRNARGD7719549_1","Rat Genome Database","uncharacterized LOC102546702","chr12",100,100,{"$nulls":24},"NonCoding",3.51,3.46,3.38,4.05,3.57,3.97]
["TC0300001797.rn.1",4.42,5.51,-2.129,"down",0.016870043623097,0.0231769636014567,"NONMMUG024803","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200006933.mm","Noncoding",128178132,128180905,30,null,"NA","MTA_TR0200006933.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.42,4.21,4.62,4.86,5.41,6.27]
["TC0100002050.rn.1",15.76,14.95,1.753,"up",0.0168734937318172,0.023178037293642,null,null,"chr1","+",null,"Pseudogene",158864346,158864722,30,null,"NA","ENSRNOT00000074995","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:165102932:165103308:1 gene:ENSRNOG00000046332 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",15.72,15.87,15.7,14.69,14.99,15.17]
["TC0800001779.rn.1",4.27,4.71,-1.357,"down",0.0169269583215679,0.023228541148654,"LOC102550574","uncharacterized LOC102550574","chr8","+","mRNARGD7609198_1","Noncoding",129930139,129936107,30,null,"NA","mRNARGD7609198_1","Rat Genome Database","uncharacterized LOC102550574","chr8",100,100,{"$nulls":24},"NonCoding",4.33,4.17,4.32,4.74,4.65,4.74]
["TC1400001361.rn.1",4.25,3.87,1.301,"up",0.0169303183169137,0.023228541148654,null,null,"chr14","-",null,"Pseudogene",9023611,9024338,30,null,"NA","ENSRNOT00000050301","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:8992549:8993276:-1 gene:ENSRNOG00000033876 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",4.44,4.3,4.02,4.03,3.73,3.86]
["TC0100007616.rn.1",6.63,5.75,1.84,"up",0.0169915880981853,0.0232886915617466,"jeyflo","Unannotated AceView Transcript","chr1","-","jeyflo.aSep08","Noncoding",254509226,254510889,40,null,"NA","jeyflo.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"NonCoding",6.58,6.79,6.52,5.69,5.65,5.9]
["TC0300000597.rn.1",4.66,3.96,1.625,"up",0.0170439429569201,0.023345229596971,"NONMMUG023003","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200002847.mm","Noncoding",38519575,38520770,30,null,"NA","MTA_TR0200002847.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.63,4.43,4.92,3.77,3.76,4.35]
["TC0900001998.rn.1",3.69,4,-1.24,"down",0.0171071275206233,0.0234045768418325,"NONMMUG000650","Non-coding transcript identified by NONCODE: Linc","chr9","-","MTA_TR0100007582.mm","Noncoding",62014402,62015543,30,null,"NA","MTA_TR0100007582.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",3.72,3.83,3.53,3.88,4,4.11]
["TC0200002120.rn.1",5.28,5.77,-1.404,"down",0.0171735678898153,0.0234732904094722,null,null,"chr2","+",null,"Pseudogene",226825635,226826642,30,null,"NA","ENSRNOT00000042173","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:246187424:246188431:1 gene:ENSRNOG00000030491 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",5.33,5.36,5.15,5.77,6.1,5.43]
["TC1000000129.rn.1",5.47,5.77,-1.231,"down",0.0171938667052057,0.0234862513592929,"uc007yav.1","cDNA, clone:Y0G0112D24, strand:unspecified.","chr10","+","MTA_TR1600003896.mm","Noncoding",10832573,10833056,30,null,"NA","MTA_TR1600003896.mm","MTA2Rn6","cDNA, clone:Y0G0112D24, strand:unspecified.","chr10",100,100,{"$nulls":24},"NonCoding",5.51,5.48,5.42,5.91,5.58,5.81]
["TC0800003157.rn.1",3.56,3.14,1.338,"up",0.0172370772214078,0.0235304729597701,"KnowTID_00007784","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","-","MTA_TR0900009241.mm","Noncoding",103400523,103401686,30,null,"NA","MTA_TR0900009241.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",3.52,3.49,3.68,2.98,3.19,3.26]
["TC0800000068.rn.1",4.46,5.35,-1.853,"down",0.0172681967726239,0.0235581438888911,"KnowTID_00007412","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900000206.mm","Noncoding",7200733,7202151,30,null,"NA","MTA_TR0900000206.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",4.66,4.56,4.15,5.44,5.83,4.77]
["TC0800003608.rn.1",3.62,3.31,1.24,"up",0.0172798952385661,0.0235722522529552,"KnowTID_00007853","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","-","MTA_TR0900010761.mm","Noncoding",131595557,131599036,30,null,"NA","MTA_TR0900010761.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",3.79,3.61,3.47,3.32,3.17,3.44]
["TC0300001238.rn.1",4.4,5.2,-1.741,"down",0.0173052046927945,0.0235993649488564,"NONMMUG023921","Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200004801.mm","Noncoding",86499802,86502434,30,null,"NA","MTA_TR0200004801.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",4.36,4.66,4.19,4.78,5,5.82]
["TC0500002979.rn.1",6.22,8.46,-4.724,"down",0.0173562821250824,0.023646743278024,"NONMMUG029607","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400009905.mm","Noncoding",93471837,93475578,30,null,"NA","MTA_TR0400009905.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",6.57,5.97,6.12,8.03,8.06,9.29]
["TC0500000515.rn.1",8.1,8.37,-1.206,"down",0.0174176405397715,0.023711742462098,"NCBI_Gene:100862318","PREDICTED:  uncharacterized LOC100862318, transcript variant 1 (LOC100862318), miscRNA.","chr5","+","MTA_TR0400001191.mm","Noncoding",58426549,58441595,30,null,"NA","MTA_TR0400001191.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862318, transcript variant 1 (LOC100862318), miscRNA.","chr5",100,100,{"$nulls":24},"NonCoding",8.04,8.2,8.07,8.44,8.2,8.47]
["TC1300001353.rn.1",3.73,3.22,1.424,"up",0.0174465372511203,0.0237324822701026,"gykee","Unannotated AceView Transcript","chr13","-","gykee.aSep08","Noncoding",45412107,45417555,30,null,"NA","gykee.aSep08","Ace View","Unannotated AceView Transcript","chr13",100,100,{"$nulls":24},"NonCoding",3.97,3.73,3.49,3.32,2.95,3.38]
["TC0500001845.rn.1",4.5,4.14,1.283,"up",0.017487953617276,0.0237702067516198,"NONMMUG031218","Non-coding transcript identified by NONCODE: Linc","chr5","+","MTA_TR0400006293.mm","Noncoding",160770516,160771765,50,null,"NA","MTA_TR0400006293.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",4.67,4.56,4.28,4.1,4.16,4.16]
["TC0200000215.rn.1",3.11,3.57,-1.376,"down",0.0175740628276993,0.0238573808518259,"LOC102552795","uncharacterized LOC102552795","chr2","+","mRNARGD7612540_1","Noncoding",26580534,26690935,30,null,"NA","mRNARGD7612540_1","Rat Genome Database","uncharacterized LOC102552795","chr2",100,100,{"$nulls":24},"NonCoding",3.11,3.14,3.09,3.7,3.56,3.44]
["TC1500000705.rn.1",6.36,7.28,-1.892,"down",0.0175831383189517,0.0238648290066797,"LOC102549028","uncharacterized LOC102549028","chr15","+","mRNARGD7626882_1","Noncoding",47190883,47193612,30,null,"NA","mRNARGD7626882_1","Rat Genome Database","uncharacterized LOC102549028","chr15",100,100,{"$nulls":24},"NonCoding",6.26,6.59,6.22,6.86,7.21,7.78]
["TC0600002765.rn.1",4.06,3.59,1.385,"up",0.01763512830366,0.0239159820253632,"LOC102555771","uncharacterized LOC102555771","chr6","-","mRNARGD7608907_1","Noncoding",103793019,103797150,30,null,"NA","mRNARGD7608907_1","Rat Genome Database","uncharacterized LOC102555771","chr6",100,100,{"$nulls":24},"NonCoding",3.89,4.39,3.91,3.79,3.39,3.59]
["TC0700002378.rn.1",4.86,6.9,-4.112,"down",0.0177148775196171,0.0239904215633639,"uc029rao.1","non-coding RNA, oocyte_clustered_small_RNA1764, complete sequence.","chr7","-","MTA_TR1000003188.mm","Noncoding",26455229,26455255,3,null,"NA","MTA_TR1000003188.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA1764, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",4.58,4.18,5.81,5.9,7.72,7.08]
["TC1000001183.rn.1",5.98,5.59,1.31,"up",0.0177631506986855,0.0240370562270675,"NONMMUG006913","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","+","MTA_TR1100004431.mm","Noncoding",66710592,66712387,30,null,"NA","MTA_TR1100004431.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",5.89,6.07,5.97,5.53,5.52,5.71]
["TC0800000771.rn.1",3.86,3.56,1.231,"up",0.0178056253803199,0.0240832763747985,"NONMMUG042884","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","+","MTA_TR0900002101.mm","Noncoding",61511410,61512085,30,null,"NA","MTA_TR0900002101.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",3.81,4.04,3.72,3.6,3.47,3.62]
["TC0600002456.rn.1",4.67,4.29,1.301,"up",0.0178461259941709,0.024116291535125,"LOC102547890","uncharacterized LOC102547890","chr6","-","mRNARGD7578759_1","Noncoding",75224239,75228553,40,null,"NA","mRNARGD7578759_1","Rat Genome Database","uncharacterized LOC102547890","chr6",100,100,{"$nulls":24},"NonCoding",4.64,4.94,4.44,4.27,4.17,4.42]
["TC0300003004.rn.1",5.67,4.99,1.602,"up",0.0178815174084963,0.024149861546279,"NONMMUG022763","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200012313.mm","Noncoding",22493688,22495846,30,null,"NA","MTA_TR0200012313.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.44,5.7,5.88,4.71,4.72,5.53]
["TC0700001306.rn.1",15.34,14.38,1.945,"up",0.0179215655090947,0.0241809409502877,null,null,"chr7","+",null,"Pseudogene",116213894,116216786,30,null,"NA","ENSRNOT00000070974","ENSEMBL","ensembl:known chromosome:Rnor_5.0:7:116116708:116119600:1 gene:ENSRNOG00000047892 gene_biotype:pseudogene transcript_biotype:pseudogene","chr7",100,100,"ENSRNOT00000070974","Q6QI58","ENSRNOT00000070974","Rn.124070",null,"ENSRNOT00000070974","GO:0006278","RNA-dependent DNA replication","inferred from electronic annotation","ENSRNOT00000070974","GO:0005575","cellular_component","no biological data available","ENSRNOT00000070974","GO:0003674","molecular_function","no biological data available",{"$nulls":7},"Pseudogene",15.08,16.15,14.8,14.32,14.39,14.44]
["TC0700000493.rn.1",4.05,3.42,1.548,"up",0.0180035193679432,0.0242640340554381,"ENSMUSG00000097664","predicted gene, 26765, Non-coding transcript identified by NONCODE: Antisense","chr7","+","MTA_TR1000003588.mm","Noncoding",31849344,31850630,30,null,"NA","MTA_TR1000003588.mm","MTA2Rn6","predicted gene, 26765, Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",3.82,3.82,4.51,3.65,3.43,3.17]
["TC0X00000550.rn.1",4.44,5.01,-1.485,"down",0.0180426371496092,0.0242979029324646,"NONMMUG045415","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00002555.mm","Noncoding",64980090,64980404,30,null,"NA","MTA_TR0X00002555.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",4.57,4.67,4.07,4.98,4.83,5.22]
["TC0400001760.rn.1",3.73,3.22,1.424,"up",0.0180786841073535,0.0243313567543843,"ENSMUSG00000092482","predicted gene 20531, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr4","+","MTA_TR0600004850.mm","Noncoding",157251176,157263287,30,null,"NA","MTA_TR0600004850.mm","MTA2Rn6","predicted gene 20531, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr4",100,100,{"$nulls":24},"NonCoding",3.73,3.45,4.01,3.18,3.41,3.06]
["TC1100000096.rn.1",5.93,5.2,1.659,"up",0.0181009190320899,0.0243434700672976,"NONMMUG016965","Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003004.mm","Noncoding",15803696,15803863,30,null,"NA","MTA_TR1600003004.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",5.47,6.33,5.98,5.27,5.12,5.21]
["TC1000002136.rn.1",9.87,8.85,2.028,"up",0.0181374257954383,0.0243723928501249,"NONMMUG033328","Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR0500003798.mm","Noncoding",112500118,112501522,30,null,"NA","MTA_TR0500003798.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",9.54,10.62,9.44,8.53,8.95,9.06]
["TC0100004615.rn.1",7.94,6.76,2.266,"up",0.0181867688004658,0.0244219512084796,"LOC100910106","zinc finger protein 845-like","chr1","-","mRNARGD6500089_1","Pseudogene",61856797,61876944,36,null,"NA","mRNARGD6500089_1","Rat Genome Database","zinc finger protein 845-like","chr1",100,100,{"$nulls":24},"Pseudogene",7.85,8.03,7.93,7.08,5.94,7.25]
["TC0X00002396.rn.1",5.6,5.08,1.434,"up",0.0183080647878281,0.0245379364250337,"ENSMUSG00000082966","predicted gene 14614, ribosomal protein L27 (Rpl27) pseudogene","chrX","-","MTA_TR0X00005870.mm","Pseudogene",127837077,127837459,30,null,"NA","MTA_TR0X00005870.mm","MTA2Rn6","predicted gene 14614, ribosomal protein L27 (Rpl27) pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",5.89,5.43,5.48,4.77,5.18,5.29]
["TC0700002309.rn.1",9.06,10.28,-2.329,"down",0.0183084562779841,0.0245379364250337,"LOC102552467","uncharacterized LOC102552467","chr7","-","mRNARGD7598388_1","Noncoding",20382307,20386892,40,null,"NA","mRNARGD7598388_1","Rat Genome Database","uncharacterized LOC102552467","chr7",100,100,{"$nulls":24},"NonCoding",8.63,9.47,9.08,9.96,9.88,11.01]
["TC0700002659.rn.1",4.09,3.73,1.283,"up",0.0183344269880737,0.0245594795812637,"KnowTID_00000805","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1000004027.mm","Noncoding",51239916,51242414,30,null,"NA","MTA_TR1000004027.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",4.28,3.99,4.01,3.97,3.59,3.64]
["TC0700002376.rn.1",4.4,6.59,-4.563,"down",0.0183644608854029,0.0245902297109638,"uc029ras.1","non-coding RNA, oocyte_clustered_small_RNA1829, complete sequence.","chr7","-","MTA_TR1000003192.mm","Noncoding",26454422,26454459,14,null,"NA","MTA_TR1000003192.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA1829, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",3.7,3.4,6.11,6.31,7.52,5.95]
["TC1400001330.rn.1",6.42,5.46,1.945,"up",0.018449913592027,0.0246704217540683,"NCBI_Gene:100861848","PREDICTED:  uncharacterized LOC100861848 (LOC100861848), miscRNA.","chr14","-","MTA_TR0500003379.mm","Noncoding",7073349,7076790,30,null,"NA","MTA_TR0500003379.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861848 (LOC100861848), miscRNA.","chr14",100,100,{"$nulls":24},"NonCoding",6.71,6.1,6.45,5.65,5.75,4.98]
["TC0200003239.rn.1",5.29,6.92,-3.095,"down",0.0185176605356246,0.0247361428618319,"NONMMUG026088","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300000159.mm","Noncoding",89432769,89438271,30,null,"NA","MTA_TR0300000159.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.22,5.16,5.5,6.16,6.45,8.15]
["TC0700003934.rn.1",6.31,5.77,1.454,"up",0.018546897158532,0.0247662660917116,null,null,"chr7","-",null,"Pseudogene",143051939,143052293,30,null,"NA","ENSRNOT00000074411","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:7:140853558:140853912:-1 gene:ENSRNOG00000046625 gene_biotype:pseudogene transcript_biotype:pseudogene","chr7",100,100,{"$nulls":24},"Pseudogene",6.66,6.24,6.04,5.61,6.08,5.63]
["TC0500001510.rn.1",3.69,4.21,-1.434,"down",0.0185682217366058,0.0247828336370787,"NONMMUG030693","Non-coding transcript identified by NONCODE: Linc","chr5","+","MTA_TR0400004957.mm","Noncoding",146644113,146646717,30,null,"NA","MTA_TR0400004957.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",3.48,3.73,3.85,3.85,4.28,4.5]
["TC0200002627.rn.1",5.1,4.57,1.444,"up",0.0186201161513659,0.0248253924065835,"NONMMUG011624","Non-coding transcript identified by NONCODE: Antisense","chr2","-","MTA_TR1300006980.mm","Noncoding",23826620,23828243,30,null,"NA","MTA_TR1300006980.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",5.02,4.99,5.28,4.48,4.53,4.69]
["TC0600002234.rn.1",6.3,7.23,-1.905,"down",0.0186256984309623,0.0248294605562564,"chutee","Unannotated AceView Transcript","chr6","-","chutee.aSep08-unspliced","Noncoding",46433302,46452314,47,null,"NA","chutee.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr6",100,100,{"$nulls":24},"NonCoding",6.19,6.36,6.36,7.37,7.16,7.17]
["TC0500002988.rn.1",5.05,7.07,-4.056,"down",0.0186805675166613,0.0248825409998643,"NONMMUG029624","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400009919.mm","Noncoding",94726457,94728108,30,null,"NA","MTA_TR0400009919.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",5.28,4.94,4.93,5.8,6.83,8.58]
["TC1300001443.rn.1",5.87,6.22,-1.275,"down",0.0187005958813045,0.0248925709620031,"jorkee","Unannotated AceView Transcript","chr13","-","jorkee.aSep08","Noncoding",51275947,51281798,55,null,"NA","jorkee.aSep08","Ace View","Unannotated AceView Transcript","chr13",100,100,{"$nulls":24},"NonCoding",5.9,5.8,5.9,6.25,6.37,6.04]
["TC1200001159.rn.1",6.26,5.17,2.129,"up",0.018751670973748,0.0249452654682935,"NONMMUG034191","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","-","MTA_TR0500006121.mm","Noncoding",15367666,15369947,30,null,"NA","MTA_TR0500006121.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",5.68,6.15,6.96,5,4.86,5.66]
["TC0700000787.rn.1",5.76,4.98,1.717,"up",0.0187695265266468,0.0249594614785563,"KnowTID_00000837","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc, RIKEN cDNA 1700064J06 gene (1700064J06Rik), long non-coding RNA.,  RIKEN cDNA 1700064J06 gene (1700064J06Rik), non-coding RNA.","chr7","+","MTA_TR1000004435.mm","Noncoding",62021438,62033522,40,null,"NA","MTA_TR1000004435.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc, RIKEN cDNA 1700064J06 gene (1700064J06Rik), long non-coding RNA.,  RIKEN cDNA 1700064J06 gene (1700064J06Rik), non-coding RNA.","chr7",100,100,{"$nulls":24},"NonCoding",5.69,6.29,5.31,4.98,4.74,5.21]
["TC1300001740.rn.1",5.54,4.87,1.591,"up",0.0188248263497791,0.0250119365551486,"NONMMUG002201","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","-","MTA_TR0100010688.mm","Noncoding",78359858,78361966,30,null,"NA","MTA_TR0100010688.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",5.46,5.54,5.63,4.53,4.79,5.29]
["TC1000004057.rn.1",3.62,3.95,-1.257,"down",0.018868488028562,0.025056532799033,"NONMMUG007998","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr10","-","MTA_TR1100015185.mm","Noncoding",100934772,100935866,24,null,"NA","MTA_TR1100015185.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr10",100,100,{"$nulls":24},"NonCoding",3.62,3.72,3.51,4.14,3.76,3.95]
["TC0500003691.rn.1",3.86,4.16,-1.231,"down",0.018877425108737,0.0250645686435734,"KnowTID_00005475","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400012395.mm","Noncoding",148184214,148186572,30,null,"NA","MTA_TR0400012395.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",3.92,3.82,3.84,3.96,4.24,4.27]
["TC0200002147.rn.1",6.44,5.08,2.567,"up",0.0189732714896813,0.0251532415611486,"NONMMUG027857","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300004323.mm","Noncoding",230903909,230908056,30,null,"NA","MTA_TR0300004323.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.07,6.36,6.89,5.17,4.52,5.54]
["TC0300002151.rn.1",5.57,5.08,1.404,"up",0.0190395050292029,0.0252142442526708,null,null,"chr3","+",null,"Pseudogene",152478587,152479128,30,null,"NA","ENSRNOT00000027090","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:159212190:159212731:-1 gene:ENSRNOG00000020003 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",5.7,5.53,5.48,4.96,5.01,5.26]
["TC0X00001704.rn.1",5.39,4.98,1.329,"up",0.0191436072337371,0.0253115848117862,null,null,"chrX","-",null,"Pseudogene",38854077,38854723,30,null,"NA","ENSRNOT00000065686","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:39161450:39162096:-1 gene:ENSRNOG00000038485 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",5.57,5.3,5.3,4.78,5.07,5.08]
["TC0100004450.rn.1",5.85,4.48,2.585,"up",0.0192162463065424,0.0253767230189257,"ENSMUSG00000089525","predicted gene, 23833, Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR1700000465.mm","Noncoding",48174544,48174766,30,null,"NA","MTA_TR1700000465.mm","MTA2Rn6","predicted gene, 23833, Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.83,6,5.71,4.1,4.66,4.68]
["TC1400000436.rn.1",8.03,7.2,1.778,"up",0.0192450723083793,0.0254032029687581,"LOC102555161","uncharacterized LOC102555161","chr14","+","mRNARGD7629819_1","Noncoding",37081766,37096364,30,null,"NA","mRNARGD7629819_1","Rat Genome Database","uncharacterized LOC102555161","chr14",100,100,{"$nulls":24},"NonCoding",7.98,8.06,8.06,6.72,7.21,7.67]
["TC0100005279.rn.1",4.82,5.23,-1.329,"down",0.01925559502737,0.0254074395154154,"forflu","Unannotated AceView Transcript","chr1","-","forflu.aSep08","Noncoding",94828226,95424141,30,null,"NA","forflu.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"NonCoding",4.58,5.05,4.84,5.1,5.28,5.31]
["TC1300001524.rn.1",4.89,5.3,-1.329,"down",0.0192822124877635,0.0254277901615198,"LOC102552456","uncharacterized LOC102552456","chr13","-","mRNARGD7675891_1","Noncoding",56003971,56015052,30,null,"NA","mRNARGD7675891_1","Rat Genome Database","uncharacterized LOC102552456","chr13",100,100,{"$nulls":24},"NonCoding",4.96,4.68,5.04,5.35,5.5,5.05]
["TC0500002143.rn.1",6.48,6.88,-1.32,"down",0.0193167999449488,0.0254544570506202,null,null,"chr5","-",null,"Pseudogene",4209551,4209950,30,null,"NA","ENSRNOT00000009926","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:4186433:4186832:-1 gene:ENSRNOG00000007554 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",6.47,6.52,6.46,6.75,6.9,6.98]
["TC1700001221.rn.1",4.69,4.29,1.32,"up",0.0193657529903498,0.0254946945960869,"LOC102553430","uncharacterized LOC102553430","chr17","-","mRNARGD7514339_1","Noncoding",5003850,5009197,30,null,"NA","mRNARGD7514339_1","Rat Genome Database","uncharacterized LOC102553430","chr17",100,100,{"$nulls":24},"NonCoding",4.49,4.61,4.98,4.4,4.24,4.24]
["TC1100001960.rn.1",16.29,15.65,1.558,"up",0.0193876768013929,0.0255158219347675,"wawmaw","Unannotated AceView Transcript","chr11","-","wawmaw.aSep08-unspliced","Pseudogene",85305924,85311442,50,null,"NA","wawmaw.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr11",100,100,{"$nulls":24},"Pseudogene",16.04,16.8,16.04,15.47,15.73,15.74]
["TC1700000507.rn.1",5.85,6.19,-1.266,"down",0.0194229114275192,0.0255409079793668,null,null,"chr17","+",null,"Pseudogene",32952847,32953237,30,null,"NA","ENSRNOT00000059839","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:34845053:34845443:1 gene:ENSRNOG00000039120 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",5.77,5.82,5.96,6.25,6.35,5.96]
["TC0700000385.rn.1",4.21,4.62,-1.329,"down",0.0195223695364256,0.0256386997215732,"LOC102551604","uncharacterized LOC102551604","chr7","+","mRNARGD7680437_1","Noncoding",24019159,24035254,30,null,"NA","mRNARGD7680437_1","Rat Genome Database","uncharacterized LOC102551604","chr7",100,100,{"$nulls":24},"NonCoding",4.45,3.96,4.23,4.83,4.48,4.55]
["TC1000002305.rn.1",4.23,4.51,-1.214,"down",0.0195624865852533,0.0256739161734992,"NONMMUG015631","Non-coding transcript identified by NONCODE: Antisense","chr10","-","MTA_TR1600000093.mm","Noncoding",11215911,11216517,30,null,"NA","MTA_TR1600000093.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",4.15,4.31,4.22,4.32,4.68,4.52]
["TC0500003898.rn.1",4.39,4.71,-1.248,"down",0.0195949948630308,0.0257049279388089,"LOC102553954","uncharacterized LOC102553954","chr5","-","mRNARGD7558329_1","Noncoding",156612510,156615877,30,null,"NA","mRNARGD7558329_1","Rat Genome Database","uncharacterized LOC102553954","chr5",100,100,{"$nulls":24},"NonCoding",4.41,4.43,4.34,4.94,4.63,4.55]
["TC1100000252.rn.1",7.23,6.75,1.395,"up",0.0196208863171403,0.0257350057546847,"LOC363746","similar to 40S ribosomal protein S7 (S8)","chr11","+","mRNARGD2355551_1","Pseudogene",31673054,31673671,30,null,"NA","mRNARGD2355551_1","Rat Genome Database","similar to 40S ribosomal protein S7 (S8)","chr11",100,100,{"$nulls":24},"Pseudogene",7.41,7.36,6.93,6.63,6.98,6.63]
["TC1500002079.rn.1",7.96,7.42,1.454,"up",0.0196527808598846,0.0257651665144947,"NONMMUG013460","Non-coding transcript identified by NONCODE: Linc","chr15","-","MTA_TR1400007526.mm","Noncoding",57890258,57894504,100,null,"NA","MTA_TR1400007526.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",7.86,7.83,8.19,7.43,7.66,7.17]
["TC0800000266.rn.1",3.79,4.14,-1.275,"down",0.0197041493304085,0.02580719128542,"NONMMUG042290","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","+","MTA_TR0900000761.mm","Noncoding",24467927,24470058,30,null,"NA","MTA_TR0900000761.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",3.64,3.92,3.8,3.99,4.08,4.35]
["TC0300002107.rn.1",3.54,3.17,1.292,"up",0.0197310581071961,0.0258288025908141,"NONMMUG025195","Non-coding transcript identified by NONCODE: Antisense,Exonic","chr3","+","MTA_TR0200007919.mm","Noncoding",150388704,150390292,30,null,"NA","MTA_TR0200007919.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense,Exonic","chr3",100,100,{"$nulls":24},"NonCoding",3.46,3.55,3.61,3.27,3.09,3.14]
["TC0900002328.rn.1",4.53,3.98,1.464,"up",0.0197414418147779,0.0258354819580955,"NONMMUG001124","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR0100008547.mm","Noncoding",86450426,86452595,30,null,"NA","MTA_TR0100008547.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",4.41,4.41,4.76,3.92,4.25,3.77]
["TC0200001872.rn.1",4.17,4.54,-1.292,"down",0.019779570979625,0.0258728108047489,null,null,"chr2","+",null,"Pseudogene",205472404,205473394,30,null,"NA","ENSRNOT00000023508","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:224903013:224904003:1 gene:ENSRNOG00000017475 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",4.29,4.33,3.88,4.51,4.45,4.65]
["TC0800001706.rn.1",3.47,3.17,1.231,"up",0.0197820970500735,0.0258741666935341,"LOC102547874","uncharacterized LOC102547874","chr8","+","mRNARGD7630483_1","Noncoding",126538424,126556028,38,null,"NA","mRNARGD7630483_1","Rat Genome Database","uncharacterized LOC102547874","chr8",100,100,{"$nulls":24},"NonCoding",3.35,3.7,3.35,3.18,3.19,3.15]
["TC0900001110.rn.1",5.57,5.01,1.474,"up",0.0198357531301829,0.0259248263956367,"LOC102554560","uncharacterized LOC102554560","chr9","+","mRNARGD7727221_1","Noncoding",97012514,97014374,30,null,"NA","mRNARGD7727221_1","Rat Genome Database","uncharacterized LOC102554560","chr9",100,100,{"$nulls":24},"NonCoding",5.56,5.32,5.84,4.76,5,5.26]
["TC0X00000042.rn.1",9.56,9,1.474,"up",0.019849607724163,0.0259390307512552,null,null,"chrX","+",null,"Pseudogene",5622909,5623536,30,null,"NA","ENSRNOT00000039003","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:6401975:6402602:1 gene:ENSRNOG00000024098 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",9.6,9.54,9.55,8.93,9.1,8.96]
["TC0300000467.rn.1",5.31,4.17,2.204,"up",0.0199526864538176,0.0260271910843112,"NONMMUG022780","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200002571.mm","Noncoding",23127411,23129598,30,null,"NA","MTA_TR0200002571.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",4.85,5.41,5.66,4.63,3.69,4.2]
["TC0400002696.rn.1",7.91,9.59,-3.204,"down",0.0200169169384849,0.0260948490910635,"KnowTID_00006279","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","-","MTA_TR0600006925.mm","Noncoding",64365114,64366680,30,null,"NA","MTA_TR0600006925.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",8.13,7.76,7.84,9.5,9.73,9.53]
["TC1400001928.rn.1",4.02,4.72,-1.625,"down",0.0200766082170894,0.0261504288953576,"NONMMUG032420","Non-coding transcript identified by NONCODE: Antisense","chr14","-","MTA_TR0500001798.mm","Noncoding",66050515,66054400,30,null,"NA","MTA_TR0500001798.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr14",100,100,{"$nulls":24},"NonCoding",3.93,4.29,3.85,4.26,4.69,5.22]
["TC1200000266.rn.1",3.59,3.29,1.231,"up",0.0200870033124263,0.0261528507375324,"NONMMUG034190","Non-coding transcript identified by NONCODE: Antisense","chr12","+","MTA_TR0500012732.mm","Noncoding",15377910,15378538,30,null,"NA","MTA_TR0500012732.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr12",100,100,{"$nulls":24},"NonCoding",3.75,3.4,3.63,3.35,3.35,3.16]
["TC0900001301.rn.1",3.4,3.12,1.214,"up",0.0201103179347665,0.0261714363833405,"NONMMUG018743","Non-coding transcript identified by NONCODE: Antisense,  adult male testis cDNA, RIKEN full-length enriched library, clone:1700016K05 product:unclassifiable, full insert sequence.","chr9","+","MTA_TR1700004093.mm","Noncoding",114890538,114896834,40,null,"NA","MTA_TR1700004093.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense,  adult male testis cDNA, RIKEN full-length enriched library, clone:1700016K05 product:unclassifiable, full insert sequence.","chr9",100,100,{"$nulls":24},"NonCoding",3.42,3.57,3.22,3.07,3.15,3.14]
["TC1000003071.rn.1",3.39,3.66,-1.206,"down",0.020114958086531,0.0261740016040647,"NONMMUG006536","Non-coding transcript identified by NONCODE: Antisense","chr10","-","MTA_TR1100011293.mm","Noncoding",55930795,55933994,30,null,"NA","MTA_TR1100011293.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",3.39,3.4,3.39,3.55,3.65,3.79]
["TC1500001390.rn.1",3.51,3.21,1.231,"up",0.020133219918952,0.0261855468113294,"LOC102547590","uncharacterized LOC102547590","chr15","-","mRNARGD7716553_1","Noncoding",16966232,16979031,17,null,"NA","mRNARGD7716553_1","Rat Genome Database","uncharacterized LOC102547590","chr15",100,100,{"$nulls":24},"NonCoding",3.5,3.65,3.38,3.08,3.28,3.28]
["TC1600001869.rn.1",5.38,5.83,-1.366,"down",0.0201428970243804,0.0261942105263147,null,null,"chr16","-",null,"Pseudogene",71075095,71075427,30,null,"NA","ENSRNOT00000073351","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:70737056:70737388:-1 gene:ENSRNOG00000050771 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",5.41,5.13,5.59,5.93,5.78,5.77]
["TC0100007935.rn.1",5.7,5.08,1.537,"up",0.0202384041482497,0.0262810285160533,"uc029tsw.1","2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330029F14 product:unclassifiable, full insert sequence.","chr1","-","MTA_TR1900005749.mm","Noncoding",276288411,276290767,30,null,"NA","MTA_TR1900005749.mm","MTA2Rn6","2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330029F14 product:unclassifiable, full insert sequence.","chr1",100,100,{"$nulls":24},"NonCoding",5.68,5.66,5.75,5,5.39,4.86]
["TC0X00001918.rn.1",5.22,4.72,1.414,"up",0.0202650085259115,0.0263101733200173,"NONMMUG045438","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00007442.mm","Noncoding",68434630,68437351,30,null,"NA","MTA_TR0X00007442.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",5.18,5.39,5.1,4.91,4.68,4.56]
["TC0600001423.rn.1",4.14,4.44,-1.231,"down",0.020311343604225,0.0263521061878402,"LOC100909917","uncharacterized LOC100909917","chr6","+","mRNARGD7704803_1","Noncoding",129148250,129195340,30,null,"NA","mRNARGD7704803_1","Rat Genome Database","uncharacterized LOC100909917","chr6",100,100,{"$nulls":24},"NonCoding",4.25,4.12,4.06,4.57,4.49,4.26]
["TC2000001636.rn.1",5.95,3.98,3.918,"up",0.0203682779789864,0.026408221881846,null,null,"chr20","-",null,"Noncoding",40882157,40882848,30,null,"NA","NONRATT034136","NONCODE","Non-coding transcript identified by NONCODE","chr20",100,100,{"$nulls":24},"NonCoding",5.6,6.93,5.32,3.73,4.09,4.11]
["TC0900000026.rn.1",16.58,15.77,1.753,"up",0.0204347207304719,0.0264756285390818,null,null,"chr9","+",null,"Pseudogene",2902922,2904555,30,null,"NA","ENSRNOT00000075106","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:2835642:2837275:1 gene:ENSRNOG00000048948 gene_biotype:pseudogene transcript_biotype:pseudogene","chr9",100,100,{"$nulls":24},"Pseudogene",16.29,17.26,16.18,15.71,15.57,16.04]
["TC0800002072.rn.1",15.23,14.67,1.474,"up",0.0204426927691745,0.0264790109681105,null,null,"chr8","-",null,"Noncoding",22391999,22392395,30,null,"NA","NONRATT054576","NONCODE","Non-coding transcript identified by NONCODE","chr8",100,100,{"$nulls":24},"NonCoding",14.99,15.66,15.04,14.61,14.82,14.57]
["TC0400001430.rn.1",4.55,4.12,1.347,"up",0.020508566483623,0.0265386105771018,"Prickle2","prickle homolog 2 (Drosophila) (Prickle2), mRNA. Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4","+","TCONS_00084082","Noncoding",124376641,124377348,30,null,"NA","TCONS_00084082","Chalmel","prickle homolog 2 (Drosophila) (Prickle2), mRNA. Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4",100,100,{"$nulls":24},"NonCoding",4.51,4.51,4.64,4.41,3.84,4.12]
["TC0700002365.rn.1",3.27,4.17,-1.866,"down",0.020513877570642,0.0265435059426162,"uc029rbq.1","non-coding RNA, oocyte_clustered_small_RNA2970, complete sequence.","chr7","-","MTA_TR1000003229.mm","Noncoding",26452073,26452126,30,null,"NA","MTA_TR1000003229.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA2970, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",3.28,2.94,3.59,3.74,4.86,3.92]
["TC1600001290.rn.1",16.06,15.39,1.591,"up",0.0205684600291442,0.0265963018584386,null,null,"chr16","-",null,"Pseudogene",14864108,14869629,30,null,"NA","ENSRNOT00000072221","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:14763756:14769277:-1 gene:ENSRNOG00000050966 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",15.83,16.53,15.83,15.15,15.47,15.56]
["TC0900000013.rn.1",4.87,4.1,1.705,"up",0.0205838373900191,0.0266082630824544,"NONMMUG018530","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","+","MTA_TR1700008422.mm","Noncoding",1247026,1248648,30,null,"NA","MTA_TR1700008422.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",4.82,4.82,4.96,4.15,3.85,4.29]
["TC1700000973.rn.1",4.82,5.81,-1.986,"down",0.0206389817129675,0.0266517805037138,"NONMMUG021908","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","+","MTA_TR0200010210.mm","Noncoding",75221207,75222217,30,null,"NA","MTA_TR0200010210.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",4.85,4.69,4.93,5.07,5.81,6.56]
["TC0500003629.rn.1",4.66,5.08,-1.338,"down",0.0206615247935056,0.0266743889449448,"NONMMUG030676","Non-coding transcript identified by NONCODE: Antisense","chr5","-","MTA_TR0400012133.mm","Noncoding",145298741,145302151,30,null,"NA","MTA_TR0400012133.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",4.69,4.74,4.55,5.16,5.35,4.74]
["TC1400000138.rn.1",4.58,5.49,-1.879,"down",0.0207326065697443,0.0267471587494072,"NONMMUG033155","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500009999.mm","Noncoding",8171962,8173723,30,null,"NA","MTA_TR0500009999.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",4.64,4.39,4.7,4.94,5.26,6.28]
["TC0900001873.rn.1",3.48,3.96,-1.395,"down",0.0207328589350508,0.0267471587494072,"KnowTID_00000425","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr9","-","MTA_TR0100007148.mm","Noncoding",45669986,45672180,30,null,"NA","MTA_TR0100007148.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",3.42,3.43,3.6,4.04,4.24,3.61]
["TC0500003153.rn.1",15.45,14.64,1.753,"up",0.0208000469091706,0.0268159132298651,null,null,"chr5","-",null,"Pseudogene",113813919,113819440,30,null,"NA","ENSRNOT00000075137","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:117760465:117765986:-1 gene:ENSRNOG00000050296 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",15.2,15.98,15.16,14.36,14.65,14.9]
["TC1700000909.rn.1",16.2,15.53,1.591,"up",0.0208149147677334,0.0268291076968388,null,null,"chr17","+",null,"Pseudogene",69891617,69893298,30,null,"NA","ENSRNOT00000048694","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:71592703:71594384:1 gene:ENSRNOG00000029346 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",15.99,16.73,15.88,15.46,15.34,15.79]
["TC1300000030.rn.1",3.61,3.92,-1.24,"down",0.0208325131854813,0.0268367541563073,"LOC681197","similar to FERM domain containing 3","chr13","+","mRNARGD6708839_1","Pseudogene",10653891,10655643,30,null,"NA","mRNARGD6708839_1","Rat Genome Database","similar to FERM domain containing 3","chr13",100,100,{"$nulls":24},"Pseudogene",3.52,3.76,3.54,3.9,3.74,4.11]
["TC1700000963.rn.1",5.47,7,-2.888,"down",0.0209222706848323,0.0269167461631562,"NONMMUG021919","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","+","MTA_TR0200010224.mm","Noncoding",74770598,74772234,30,null,"NA","MTA_TR0200010224.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",5.52,5.23,5.66,6.54,6.57,7.88]
["TC0300001568.rn.1",3.08,3.45,-1.292,"down",0.0209587677198457,0.0269405619403167,"NONMMUG024426","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200006016.mm","Noncoding",113558755,113563888,30,null,"NA","MTA_TR0200006016.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",3.06,3.27,2.92,3.33,3.32,3.7]
["TC1000002338.rn.1",14.19,12.82,2.585,"up",0.0209781787710109,0.0269615228936986,null,null,"chr10","-",null,"Pseudogene",12562458,12565136,30,null,"NA","ENSRNOT00000073887","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:12386990:12389668:-1 gene:ENSRNOG00000048460 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",13.86,14.63,14.08,12.44,12.63,13.4]
["TC0600001919.rn.1",5.58,6.6,-2.028,"down",0.0210341059547124,0.0270094215360223,"NONMMUG019167","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","-","MTA_TR1700009870.mm","Noncoding",14376375,14376828,30,null,"NA","MTA_TR1700009870.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",5.76,5.53,5.45,6.4,6.01,7.39]
["TC1200001138.rn.1",3.37,3.05,1.248,"up",0.0210819932156992,0.027056533653232,"LOC102556180","uncharacterized LOC102556180","chr12","-","mRNARGD7624582_1","Noncoding",13875828,13879029,30,null,"NA","mRNARGD7624582_1","Rat Genome Database","uncharacterized LOC102556180","chr12",100,100,{"$nulls":24},"NonCoding",3.51,3.41,3.19,3.09,2.88,3.19]
["TC0500002439.rn.1",3.33,2.99,1.266,"up",0.0211308648453159,0.0271016134988174,"KnowTID_00005381","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400007960.mm","Noncoding",40823171,40824649,30,null,"NA","MTA_TR0400007960.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",3.52,3.38,3.1,3.1,2.84,3.03]
["TC0500003552.rn.1",6.27,5.52,1.682,"up",0.0211409084728698,0.02711249325081,"NONMMUG030538","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400011849.mm","Noncoding",141168001,141169213,30,null,"NA","MTA_TR0400011849.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",6.28,6.26,6.26,5.36,5.16,6.03]
["TC0400000803.rn.1",3.85,4.27,-1.338,"down",0.0212092161133515,0.0271680033260843,"NONMMUG035200","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600001756.mm","Noncoding",75447769,75450021,30,null,"NA","MTA_TR0600001756.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",3.83,3.71,4.01,4.04,4.28,4.49]
["TC1400000588.rn.1",14.4,13.78,1.537,"up",0.0212132152480143,0.0271691190793524,null,null,"chr14","+",null,"Pseudogene",50323869,50327149,30,null,"NA","ENSRNOT00000075093","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:50483655:50486935:1 gene:ENSRNOG00000050526 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",14.14,14.96,14.1,13.73,13.85,13.75]
["TC0X00001244.rn.1",11.42,12.91,-2.809,"down",0.021236344361273,0.0271885902325327,null,null,"chrX","+",null,"Pseudogene",151819444,151820752,30,null,"NA","ENSRNOT00000074646","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:151809495:151810803:1 gene:ENSRNOG00000048610 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",11.48,11.33,11.45,12.8,12.98,12.96]
["TC0600001281.rn.1",5.86,7.22,-2.567,"down",0.0212403399972214,0.0271898265358683,"NONMMUG009664","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200002653.mm","Noncoding",114025492,114027846,30,null,"NA","MTA_TR1200002653.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",5.59,5.95,6.03,6.65,7.03,7.98]
["TC2000001456.rn.1",4.04,3.5,1.454,"up",0.021319064182164,0.0272564557229978,"NONMMUG003845","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr20","-","MTA_TR1000001825.mm","Noncoding",23056562,23060832,30,null,"NA","MTA_TR1000001825.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr20",100,100,{"$nulls":24},"NonCoding",3.81,4.35,3.95,3.71,3.36,3.42]
["TC1700001735.rn.1",5.93,7.52,-3.01,"down",0.021338011785601,0.0272726512197539,"deyfer","Unannotated AceView Transcript","chr17","-","deyfer.aSep08","Noncoding",37500686,37542025,80,null,"NA","deyfer.aSep08","Ace View","Unannotated AceView Transcript","chr17",100,100,{"$nulls":24},"NonCoding",5.87,5.89,6.02,7.03,7.39,8.13]
["TC1300000008.rn.1",5.6,5.98,-1.301,"down",0.0214117294616932,0.0273369756387871,null,null,"chr13","+",null,"Pseudogene",3995550,3996550,30,null,"NA","ENSRNOT00000045152","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:3973027:3974027:1 gene:ENSRNOG00000031274 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",5.73,5.77,5.31,6.02,5.94,5.99]
["TC1300001196.rn.1",5.62,4.94,1.602,"up",0.0214128239760844,0.0273369756387871,"LOC102550458","uncharacterized LOC102550458","chr13","-","mRNARGD7514958_1","Noncoding",25927265,25958763,40,null,"NA","mRNARGD7514958_1","Rat Genome Database","uncharacterized LOC102550458","chr13",100,100,{"$nulls":24},"NonCoding",5.71,5.19,5.96,4.81,4.81,5.19]
["TC0600002573.rn.1",7.43,6.72,1.636,"up",0.0215654164859302,0.0274824187350226,"LOC102551380","uncharacterized LOC102551380","chr6","-","mRNARGD7557079_1","Noncoding",88236006,88237608,30,null,"NA","mRNARGD7557079_1","Rat Genome Database","uncharacterized LOC102551380","chr6",100,100,{"$nulls":24},"NonCoding",7.25,7.77,7.27,6.56,6.6,7]
["TC1000003991.rn.1",5.71,5.01,1.625,"up",0.0215772922461405,0.0274919267673827,"NONMMUG007892","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1100015020.mm","Noncoding",95596582,95598009,30,null,"NA","MTA_TR1100015020.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",5.61,5.64,5.88,5.01,4.7,5.33]
["TC2000000500.rn.1",3.33,2.88,1.366,"up",0.02159655880381,0.027506889494047,"LOC102547483","uncharacterized LOC102547483","chr20","+","mRNARGD7681305_1","Noncoding",18287210,18302235,30,null,"NA","mRNARGD7681305_1","Rat Genome Database","uncharacterized LOC102547483","chr20",100,100,{"$nulls":24},"NonCoding",3.14,3.66,3.18,3.02,2.8,2.81]
["TC0300002194.rn.1",5.32,5.79,-1.385,"down",0.0215972866161595,0.027506889494047,null,null,"chr3","+",null,"Noncoding",154894116,154894356,30,null,"NA","NONRATT038481","NONCODE","Non-coding transcript identified by NONCODE","chr3",100,100,{"$nulls":24},"NonCoding",5.44,5.09,5.44,5.59,6.06,5.71]
["TC2000001545.rn.1",6.46,6.13,1.257,"up",0.02164729431956,0.0275402921946006,null,null,"chr20","-",null,"Pseudogene",31084726,31085305,30,null,"NA","ENSRNOT00000000670","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:32870174:32870753:-1 gene:ENSRNOG00000000554 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",6.6,6.36,6.43,6.09,6.25,6.04]
["TC0400002944.rn.1",4.11,4.53,-1.338,"down",0.0216497572315123,0.0275414084854339,"NONMMUG035418","Non-coding transcript identified by NONCODE: Antisense","chr4","-","MTA_TR0600007668.mm","Noncoding",84869941,84871063,30,null,"NA","MTA_TR0600007668.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",4.28,4.07,3.99,4.69,4.28,4.63]
["TC1300000852.rn.1",5.57,4.61,1.945,"up",0.0217132508259142,0.0276100490518231,"ENSMUSG00000084749","predicted gene, 25288, Non-coding transcript identified by NONCODE: Antisense","chr13","+","MTA_TR0100005492.mm","Noncoding",94868954,94869010,30,null,"NA","MTA_TR0100005492.mm","MTA2Rn6","predicted gene, 25288, Non-coding transcript identified by NONCODE: Antisense","chr13",100,100,{"$nulls":24},"NonCoding",5.42,5.46,5.83,4.54,4.98,4.3]
["TC0400002759.rn.1",15.34,14.62,1.647,"up",0.0217442964760263,0.0276414324248118,null,null,"chr4","-",null,"Pseudogene",69243145,69244996,30,null,"NA","ENSRNOT00000041677","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:134029320:134031171:-1 gene:ENSRNOG00000033831 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",15.21,15.82,14.98,14.6,14.71,14.55]
["TC1400000133.rn.1",4.14,3.78,1.283,"up",0.0218667916547927,0.0277423340516655,"LOC102546909","uncharacterized LOC102546909","chr14","+","mRNARGD7716653_1","Noncoding",7969572,7998993,56,null,"NA","mRNARGD7716653_1","Rat Genome Database","uncharacterized LOC102546909","chr14",100,100,{"$nulls":24},"NonCoding",4.1,4.37,3.95,3.78,3.62,3.93]
["TC1800001076.rn.1",7.16,6.58,1.495,"up",0.0219022631246616,0.0277751651875089,"LOC102552679","uncharacterized LOC102552679","chr18","-","mRNARGD7638940_1","Noncoding",8254688,8268130,30,null,"NA","mRNARGD7638940_1","Rat Genome Database","uncharacterized LOC102552679","chr18",100,100,{"$nulls":24},"NonCoding",7.16,7.05,7.28,6.35,6.33,7.05]
["TC0400000252.rn.1",11.59,10.56,2.042,"up",0.0219563815245974,0.0278275429347571,null,null,"chr4","+",null,"Pseudogene",23644942,23645318,30,null,"NA","ENSRNOT00000071219","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:23573783:23574159:1 gene:ENSRNOG00000049791 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",11.43,11.92,11.41,10.19,10.35,11.15]
["TC0400000410.rn.1",5.56,4.3,2.395,"up",0.0220146449872294,0.0278830767825856,"KnowTID_00006044","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0600000350.mm","Noncoding",42290739,42292481,30,null,"NA","MTA_TR0600000350.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",5.53,5.98,5.16,4.48,4.29,4.13]
["TC0600002058.rn.1",4.61,5.29,-1.602,"down",0.0220658314406168,0.0279209801429092,"NONMMUG008409","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","-","MTA_TR1200003900.mm","Noncoding",28455603,28459202,30,null,"NA","MTA_TR1200003900.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",4.41,4.67,4.76,5.15,4.86,5.85]
["TC1100000078.rn.1",4.52,4.94,-1.338,"down",0.0220672302170685,0.0279209801429092,null,null,"chr11","+",null,"Pseudogene",13338651,13339308,30,null,"NA","ENSRNOT00000050840","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:11:16992377:16993034:1 gene:ENSRNOG00000031600 gene_biotype:pseudogene transcript_biotype:pseudogene","chr11",100,100,{"$nulls":24},"Pseudogene",4.71,4.4,4.45,4.84,4.72,5.26]
["TC0200001408.rn.1",16.42,15.61,1.753,"up",0.0220880766818187,0.0279312790303467,null,null,"chr2","+",null,"Noncoding",174530823,174531101,30,null,"NA","NONRATT029547","NONCODE","Non-coding transcript identified by NONCODE","chr2",100,100,{"$nulls":24},"NonCoding",16.1,17.1,16.07,15.54,15.65,15.63]
["TC0100000602.rn.1",5.15,4.53,1.537,"up",0.0220903832831571,0.0279313420419878,"NONMMUG017544","Non-coding transcript identified by NONCODE: Antisense","chr1","+","MTA_TR1700000606.mm","Noncoding",56979223,56979571,30,null,"NA","MTA_TR1700000606.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",5.03,5.28,5.15,4.61,4.64,4.35]
["TC1100000053.rn.1",4.28,5.2,-1.892,"down",0.0221251392886397,0.0279547941919704,"KnowTID_00003181","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600002916.mm","Noncoding",9471814,9473984,30,null,"NA","MTA_TR1600002916.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",4.3,4,4.55,4.84,4.9,5.86]
["TC0700002377.rn.1",4.44,6.5,-4.17,"down",0.0221278869239368,0.0279551653640514,"uc029rap.1","non-coding RNA, oocyte_clustered_small_RNA1782, complete sequence.","chr7","-","MTA_TR1000003189.mm","Noncoding",26454978,26455003,2,null,"NA","MTA_TR1000003189.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA1782, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",4.29,2.94,6.09,6.05,6.95,6.51]
["TC0500001044.rn.1",4.07,4.44,-1.292,"down",0.0221689276469243,0.0279907284601484,"ENSMUSG00000087332","predicted gene 12690, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr5","+","MTA_TR0400002889.mm","Noncoding",118259793,118263326,30,null,"NA","MTA_TR0400002889.mm","MTA2Rn6","predicted gene 12690, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr5",100,100,{"$nulls":24},"NonCoding",4.03,3.95,4.22,4.72,4.24,4.37]
["TC1700000966.rn.1",3.32,3.84,-1.434,"down",0.0221845325463919,0.0280022899915255,"NONMMUG021917","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","+","MTA_TR0200010221.mm","Noncoding",74940963,74942713,30,null,"NA","MTA_TR0200010221.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",3.29,3.5,3.16,3.75,3.52,4.26]
["TC0900000136.rn.1",4.59,3.57,2.028,"up",0.0222433228808949,0.0280561110778409,"NONMMUG018516","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","+","MTA_TR1700008391.mm","Noncoding",12788715,12791485,30,null,"NA","MTA_TR1700008391.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",4.36,4.88,4.54,3.36,3.71,3.63]
["TC0200001313.rn.1",6.23,4.3,3.811,"up",0.0223365026674414,0.0281470720229325,null,null,"chr2","+",null,"Pseudogene",160798331,160798922,30,null,"NA","ENSRNOT00000074581","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:180151077:180151668:1 gene:ENSRNOG00000048530 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",5.78,7.09,5.82,4.37,4.04,4.49]
["TC1100001612.rn.1",5.76,4.99,1.705,"up",0.0223673663021075,0.028169616474582,"NONMMUG016544","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","-","MTA_TR1600002382.mm","Noncoding",62152871,62157079,30,null,"NA","MTA_TR1600002382.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",5.48,5.99,5.82,4.54,5.12,5.31]
["TC0500002757.rn.1",6.98,6.39,1.505,"up",0.0223754831018384,0.0281777959230125,"NCBI_Gene:100861652","PREDICTED:  uncharacterized LOC100861652 (LOC100861652), miscRNA.","chr5","-","MTA_TR0400009102.mm","Noncoding",70373403,70411863,30,null,"NA","MTA_TR0400009102.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861652 (LOC100861652), miscRNA.","chr5",100,100,{"$nulls":24},"NonCoding",7.1,6.93,6.91,6.03,6.86,6.28]
["TC0500003090.rn.1",7.95,6.95,2,"up",0.0224729827387126,0.0282678911192113,"LOC102549336","uncharacterized LOC102549336","chr5","-","mRNARGD7715318_1","Noncoding",106633678,106634140,21,null,"NA","mRNARGD7715318_1","Rat Genome Database","uncharacterized LOC102549336","chr5",100,100,{"$nulls":24},"NonCoding",7.83,8.29,7.72,6.51,6.54,7.81]
["TC0200004790.rn.1",5.68,5.16,1.434,"up",0.0224856863474832,0.0282769117499107,"NONMMUG028084","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300010100.mm","Noncoding",244317060,244319575,30,null,"NA","MTA_TR0300010100.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.61,5.41,6.02,5.01,5.05,5.41]
["TC0X00001812.rn.1",5.29,6.01,-1.647,"down",0.0225039437989303,0.0282923939879292,"NONMMUG045313","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00007161.mm","Noncoding",55731268,55732028,30,null,"NA","MTA_TR0X00007161.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",5.45,5.06,5.35,5.97,5.84,6.23]
["TC1700000148.rn.1",5.99,6.42,-1.347,"down",0.0225235647995937,0.0283102910359198,"NONMMUG011083","Non-coding transcript identified by NONCODE: Antisense","chr17","+","MTA_TR1300005694.mm","Noncoding",9455214,9456269,30,null,"NA","MTA_TR1300005694.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr17",100,100,{"$nulls":24},"NonCoding",6.15,5.87,5.96,6.3,6.63,6.33]
["TC0300004332.rn.1",5.48,4.69,1.729,"up",0.0225813080677817,0.0283650229550536,"LOC102550813","uncharacterized LOC102550813","chr3","-","mRNARGD7552780_1","Noncoding",138838288,138841320,29,null,"NA","mRNARGD7552780_1","Rat Genome Database","uncharacterized LOC102550813","chr3",100,100,{"$nulls":24},"NonCoding",5.34,5.76,5.34,4.65,4.59,4.84]
["TC0300001649.rn.1",8.1,7.56,1.454,"up",0.0226192477047798,0.0283937935503052,"NONMMUG024541","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200006301.mm","Noncoding",119362791,119363864,25,null,"NA","MTA_TR0200006301.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",8.02,8.12,8.16,7.47,7.66,7.54]
["TC0200000666.rn.1",3.45,3.99,-1.454,"down",0.0226536398805537,0.0284229959093607,"KnowTID_00002688","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1500000463.mm","Noncoding",77680618,77683122,30,null,"NA","MTA_TR1500000463.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",3.46,3.5,3.4,3.63,3.93,4.4]
["TC1100000971.rn.1",16.17,15.48,1.613,"up",0.0226614910623279,0.0284287398890516,"weymaw","Unannotated AceView Transcript","chr11","+","weymaw.aSep08-unspliced","Pseudogene",85470091,85475608,50,null,"NA","weymaw.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr11",100,100,{"$nulls":24},"Pseudogene",15.95,16.76,15.8,15.4,15.48,15.57]
["TC0100003037.rn.1",4,3.73,1.206,"up",0.0226826575852944,0.0284417616276728,"LOC102554466","uncharacterized LOC102554466","chr1","+","mRNARGD7694109_1","Noncoding",220450586,220454395,30,null,"NA","mRNARGD7694109_1","Rat Genome Database","uncharacterized LOC102554466","chr1",100,100,{"$nulls":24},"NonCoding",4,4.17,3.83,3.71,3.81,3.68]
["TC0800000350.rn.1",3.7,3.41,1.223,"up",0.0226988443957884,0.0284529965362419,"NONMMUG042422","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","+","MTA_TR0900000966.mm","Noncoding",34379905,34391437,30,null,"NA","MTA_TR0900000966.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",3.93,3.53,3.64,3.38,3.48,3.37]
["TC1500001934.rn.1",4.37,3.93,1.357,"up",0.0227761578906425,0.0285186722468005,"NONMMUG013222","Non-coding transcript identified by NONCODE: Linc","chr15","-","MTA_TR1400007001.mm","Noncoding",48412462,48414015,30,null,"NA","MTA_TR1400007001.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",4.55,4.33,4.22,4.14,3.97,3.67]
["TC0300001229.rn.1",4.76,6,-2.362,"down",0.0227880941908138,0.0285298727343154,"NONMMUG023919","Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200004798.mm","Noncoding",85944141,85945733,30,null,"NA","MTA_TR0200004798.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",4.95,4.57,4.75,5.6,5.62,6.78]
["TC0600000836.rn.1",12.33,11.79,1.454,"up",0.0228153590928893,0.0285483355827462,null,null,"chr6","+",null,"Pseudogene",80089132,80089763,30,null,"NA","ENSRNOT00000073797","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:89615004:89615635:1 gene:ENSRNOG00000048503 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",12.41,12.64,11.94,11.77,11.56,12.04]
["TC1300000514.rn.1",14.98,14.34,1.558,"up",0.0228604054674434,0.0285874381523979,null,null,"chr13","+",null,"Pseudogene",71753574,71755275,30,null,"NA","ENSRNOT00000073408","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:76702392:76704093:1 gene:ENSRNOG00000048752 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",14.75,15.51,14.69,14.23,14.17,14.61]
["TC0900002639.rn.1",4.05,3.68,1.292,"up",0.0228735330217703,0.028595620159854,"NONMMUG018755","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR1700008950.mm","Noncoding",115531535,115533637,30,null,"NA","MTA_TR1700008950.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",3.86,4.24,4.06,3.62,3.51,3.9]
["TC0400003145.rn.1",3.93,4.48,-1.464,"down",0.0228834248325527,0.0286059278041359,"LOC100911370","uncharacterized LOC100911370","chr4","-","NR_102358","Noncoding",112641827,112645315,30,null,100911370,"NR_102358","RefSeq","Rattus norvegicus uncharacterized LOC100911370 (LOC100911370), long non-coding RNA.","chr4",100,100,null,null,"NR_102358","Rn.233507",{"$nulls":20},"NonCoding",3.9,4.22,3.66,4.52,4.71,4.21]
["TC0600002976.rn.1",15.09,14.3,1.729,"up",0.0229432592939714,0.0286604578641303,null,null,"chr6","-",null,"Pseudogene",121286492,121289774,30,null,"NA","ENSRNOT00000071899","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:130510977:130514259:-1 gene:ENSRNOG00000050310 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",14.82,15.77,14.68,14.19,14.45,14.27]
["TC0500003984.rn.1",4.54,4.23,1.24,"up",0.0229684113235618,0.0286770842450652,"ENSRNOG00000037048","Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D4ADI0] Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr5","-","TCONS_00092885","Noncoding",161615757,161619577,30,null,"NA","TCONS_00092885","Chalmel","Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D4ADI0] Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr5",100,100,{"$nulls":24},"NonCoding",4.56,4.5,4.57,4.35,4.04,4.29]
["TC1000003398.rn.1",4.24,4.69,-1.366,"down",0.023030762474843,0.0287384077976078,"LOC102552240","uncharacterized LOC102552240","chr10","-","mRNARGD7530169_1","Noncoding",68835842,68841701,30,null,"NA","mRNARGD7530169_1","Rat Genome Database","uncharacterized LOC102552240","chr10",100,100,{"$nulls":24},"NonCoding",4.06,4.25,4.4,4.67,4.4,5]
["TC0500000907.rn.1",14.26,13.67,1.505,"up",0.0230991036835062,0.0288050409647396,null,null,"chr5","+",null,"Pseudogene",103960909,103961912,30,null,"NA","ENSRNOT00000073288","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:107956032:107957035:1 gene:ENSRNOG00000049381 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",14.05,14.77,13.96,13.73,13.74,13.54]
["TC1800000735.rn.1",5.22,5.75,-1.444,"down",0.0231046324768998,0.0288078216161518,"LOC102552125","uncharacterized LOC102552125","chr18","+","mRNARGD7591124_1","Noncoding",63225422,63229264,30,null,"NA","mRNARGD7591124_1","Rat Genome Database","uncharacterized LOC102552125","chr18",100,100,{"$nulls":24},"NonCoding",4.88,5.44,5.33,5.95,5.69,5.6]
["TC1700001380.rn.1",5.15,5.58,-1.347,"down",0.0231068203590877,0.0288084817668637,"NONMMUG011001","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr17","-","MTA_TR1300001676.mm","Noncoding",12407077,12409544,30,null,"NA","MTA_TR1300001676.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr17",100,100,{"$nulls":24},"NonCoding",4.92,5.3,5.24,5.66,5.74,5.35]
["TC0300001242.rn.1",5.2,6.45,-2.378,"down",0.02324713563344,0.0289294357109024,"NONMMUG023927","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200004805.mm","Noncoding",86707762,86710809,30,null,"NA","MTA_TR0200004805.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.21,5.01,5.39,6.15,6.01,7.18]
["TC0100000136.rn.1",6.87,7.74,-1.828,"down",0.0232615094759373,0.0289431760695156,"LOC365050","hypothetical gene supported by NM_175761","chr1","+","LOC365050.aSep08-unspliced","Pseudogene",13006922,13008597,40,null,"NA","LOC365050.aSep08-unspliced","Ace View","hypothetical gene supported by NM_175761","chr1",100,100,{"$nulls":24},"Pseudogene",7.04,7.04,6.54,7.6,7.89,7.73]
["TC1300000577.rn.1",15.01,14.17,1.79,"up",0.023327309241773,0.0290063485210336,null,null,"chr13","+",null,"Pseudogene",76672646,76674279,30,null,"NA","ENSRNOT00000072704","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:81586738:81588371:1 gene:ENSRNOG00000046994 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",14.75,15.7,14.59,13.98,14.05,14.49]
["TC0100004782.rn.1",4.78,5.52,-1.67,"down",0.0234776711419791,0.0291366947089601,null,null,"chr1","-",null,"Pseudogene",72360757,72361101,30,null,"NA","ENSRNOT00000073243","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:76174976:76175320:1 gene:ENSRNOG00000046037 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",5.02,4.27,5.06,5.62,5.66,5.28]
["TC1400002380.rn.1",13.77,12.81,1.945,"up",0.0235443157867009,0.0291851697992405,null,null,"chr14","-",null,"Pseudogene",108438143,108438526,30,null,"NA","ENSRNOT00000071171","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:105273068:105273451:-1 gene:ENSRNOG00000046389 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",13.61,13.98,13.71,12.43,12.75,13.24]
["TC1000002468.rn.1",3.67,3.34,1.257,"up",0.0235677080552915,0.0292028430436171,"KnowTID_00001131","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10","-","MTA_TR1100001123.mm","Noncoding",15816200,15817604,30,null,"NA","MTA_TR1100001123.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",3.8,3.69,3.53,3.53,3.17,3.33]
["TC0100000108.rn.1",4.5,5.01,-1.424,"down",0.0236017732219219,0.0292340577015787,"LOC102552144","uncharacterized LOC102552144","chr1","+","mRNARGD7687372_1","Noncoding",9543164,9568047,30,null,"NA","mRNARGD7687372_1","Rat Genome Database","uncharacterized LOC102552144","chr1",100,100,{"$nulls":24},"NonCoding",4.38,4.41,4.72,4.63,5.32,5.08]
["TC1300000158.rn.1",13.11,12.05,2.085,"up",0.0236250973781118,0.0292468334204091,null,null,"chr13","+",null,"Pseudogene",37507604,37513125,30,null,"NA","ENSRNOT00000073444","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:42665440:42670961:1 gene:ENSRNOG00000046711 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",12.75,13.98,12.6,11.91,11.77,12.47]
["TC0300004365.rn.1",3.52,3.86,-1.266,"down",0.0236818898310535,0.0293004350609138,"ENSMUSG00000084774","predicted gene 14110, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr3","-","MTA_TR0200016947.mm","Noncoding",141538129,141539250,30,null,"NA","MTA_TR0200016947.mm","MTA2Rn6","predicted gene 14110, Non-coding transcript identified by NONCODE: Linc, novel transcript","chr3",100,100,{"$nulls":24},"NonCoding",3.58,3.56,3.42,3.86,3.61,4.1]
["TC1700001158.rn.1",5.82,6.61,-1.729,"down",0.0236920109595319,0.0293025220632274,"KnowTID_00002077","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17","-","MTA_TR1300006009.mm","Noncoding",294046,295538,30,null,"NA","MTA_TR1300006009.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",5.6,5.7,6.17,6.03,6.69,7.11]
["TC0400004062.rn.1",3.06,2.78,1.214,"up",0.0237121411137634,0.0293136190484963,"NONMMUG036935","Non-coding transcript identified by NONCODE: Linc","chr4","-","MTA_TR0600011346.mm","Noncoding",179146616,179160287,30,null,"NA","MTA_TR0600011346.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",2.98,3.22,2.98,2.9,2.62,2.82]
["TC0100006852.rn.1",5.27,4.96,1.24,"up",0.0237270728383496,0.029325007632513,"LOC102552489","uncharacterized LOC102552489","chr1","-","mRNARGD7593055_1","Noncoding",209048055,209051596,30,null,"NA","mRNARGD7593055_1","Rat Genome Database","uncharacterized LOC102552489","chr1",100,100,{"$nulls":24},"NonCoding",5.29,5.37,5.16,4.74,5,5.14]
["TC0100000657.rn.1",6.02,5.21,1.753,"up",0.0237493509317675,0.0293400167154351,"NONMMUG017639","Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR1700000845.mm","Noncoding",61379108,61381536,30,null,"NA","MTA_TR1700000845.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.68,6.09,6.29,5.3,5.02,5.32]
["TC1600001125.rn.1",3.46,3.76,-1.231,"down",0.0237962729157751,0.0293812678100739,"NONMMUG012488","Non-coding transcript identified by NONCODE: Antisense","chr16","-","MTA_TR1400005125.mm","Noncoding",3259852,3294380,38,null,"NA","MTA_TR1400005125.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr16",100,100,{"$nulls":24},"NonCoding",3.55,3.41,3.43,3.67,3.61,4.01]
["TC1200001465.rn.1",4.5,4.06,1.357,"up",0.0238173853150621,0.0293927110193197,"NONMMUG033874","Non-coding transcript identified by NONCODE: Antisense","chr12","-","MTA_TR0500005204.mm","Noncoding",31359022,31360195,30,null,"NA","MTA_TR0500005204.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr12",100,100,{"$nulls":24},"NonCoding",4.43,4.46,4.61,4.27,4.03,3.87]
["TC1800001376.rn.1",3.74,4.23,-1.404,"down",0.0238360218631184,0.0294024101770294,"LOC102555679","uncharacterized LOC102555679","chr18","-","mRNARGD7552406_1","Noncoding",39752635,39757337,30,null,"NA","mRNARGD7552406_1","Rat Genome Database","uncharacterized LOC102555679","chr18",100,100,{"$nulls":24},"NonCoding",3.71,3.8,3.71,3.94,4.38,4.37]
["TC0100001879.rn.1",4.6,4.23,1.292,"up",0.0238689672278369,0.0294024101770294,"ENSMUSG00000085194","predicted gene 16012, Non-coding transcript identified by NONCODE: Sense No Exonic, putative novel transcript","chr1","+","MTA_TR0700004192.mm","Noncoding",142884700,142891667,30,null,"NA","MTA_TR0700004192.mm","MTA2Rn6","predicted gene 16012, Non-coding transcript identified by NONCODE: Sense No Exonic, putative novel transcript","chr1",100,100,{"$nulls":24},"NonCoding",4.44,4.43,4.94,4.27,4.17,4.24]
["TC1000001367.rn.1",4.37,3.94,1.347,"up",0.0239104022999833,0.0294197193903534,"Akap1","Chalmel, et. al. AceView Annotation Akap1.dSep08 Testis-expressed Unannotated Transcripts (TUTs)","chr10","+","TCONS_00018814","Noncoding",76171117,76172352,30,null,"NA","TCONS_00018814","Chalmel","Chalmel, et. al. AceView Annotation Akap1.dSep08 Testis-expressed Unannotated Transcripts (TUTs)","chr10",100,100,{"$nulls":24},"NonCoding",4.63,4.2,4.27,3.87,4.18,3.76]
["TC0200003471.rn.1",7.49,6.11,2.603,"up",0.0239808773297152,0.029477202101223,null,null,"chr2","-",null,"Pseudogene",119989499,119989746,30,null,"NA","ENSRNOT00000074098","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:139640470:139640717:-1 gene:ENSRNOG00000049933 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",7.63,8.25,6.59,5.74,6.07,6.53]
["TC0300002580.rn.1",4.6,4.25,1.275,"up",0.0240718144275182,0.029554153726277,"ENSMUSG00000088334","predicted gene, 22842","chr3","+","MTA_TR0200009692.mm","Noncoding",176350422,176350539,30,null,"NA","MTA_TR0200009692.mm","MTA2Rn6","predicted gene, 22842","chr3",100,100,{"$nulls":24},"NonCoding",4.79,4.43,4.57,4.17,4.16,4.43]
["TC1000002918.rn.1",5.17,5.59,-1.338,"down",0.0241162412662786,0.0295849736607716,"ENSMUSG00000086536","predicted gene 12264, novel transcript","chr10","-","MTA_TR1100010635.mm","Noncoding",46132637,46137766,30,null,"NA","MTA_TR1100010635.mm","MTA2Rn6","predicted gene 12264, novel transcript","chr10",100,100,{"$nulls":24},"NonCoding",5.2,5.13,5.18,5.7,5.8,5.28]
["TC1800000583.rn.1",4.72,5.81,-2.129,"down",0.024159318528163,0.029620955237306,"LOC102548347","uncharacterized LOC102548347","chr18","+","mRNARGD7710266_1","Noncoding",53559040,53564235,30,null,"NA","mRNARGD7710266_1","Rat Genome Database","uncharacterized LOC102548347","chr18",100,100,{"$nulls":24},"NonCoding",4.52,4.51,5.14,6.49,6.05,4.89]
["TC0X00002552.rn.1",15.7,15.13,1.485,"up",0.0241867942081579,0.029635829359975,null,null,"chrX","-",null,"Pseudogene",148520049,148523329,30,null,"NA","ENSRNOT00000070932","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:148533268:148536548:-1 gene:ENSRNOG00000048287 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",15.47,16.22,15.41,15.03,15.2,15.16]
["TC1500000226.rn.1",5.06,3.44,3.074,"up",0.0241884053114804,0.029635829359975,"LOC100910428","INVOLVED IN gamete generation (inferred)","chr15","+","mRNARGD6498666_1","Pseudogene",22942402,22942983,30,null,"NA","mRNARGD6498666_1","Rat Genome Database","INVOLVED IN gamete generation (inferred)","chr15",100,100,{"$nulls":24},"Pseudogene",4.43,6.27,4.47,3.39,3.61,3.33]
["TC0200001328.rn.1",6.93,3.88,8.282,"up",0.0242587551404715,0.0297052612114148,null,null,"chr2","+",null,"Noncoding",163617427,163618359,30,null,"NA","NONRATT029513","NONCODE","Non-coding transcript identified by NONCODE","chr2",100,100,{"$nulls":24},"NonCoding",5.88,8.13,6.78,4.03,3.84,3.78]
["TC1600000241.rn.1",6.05,6.34,-1.223,"down",0.0242980652841049,0.0297381190475839,"LOC102555198","uncharacterized LOC102555198","chr16","+","mRNARGD7576432_1","Noncoding",19560217,19574625,76,null,"NA","mRNARGD7576432_1","Rat Genome Database","uncharacterized LOC102555198","chr16",100,100,{"$nulls":24},"NonCoding",5.98,5.99,6.18,6.41,6.15,6.45]
["TC1700000650.rn.1",12.77,12.18,1.505,"up",0.0243563090198859,0.0297848253420935,null,null,"chr17","+",null,"Pseudogene",43801771,43802084,30,null,"NA","ENSRNOT00000049182","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:45658787:45659100:1 gene:ENSRNOG00000046334 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",12.94,12.42,12.94,12.22,12.41,11.9]
["TC1500001012.rn.1",3.72,3.32,1.32,"up",0.0243916874393552,0.0298133973057303,"XLOC_015553","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr15","+","TCONS_00039710","Noncoding",87330987,87332761,40,null,"NA","TCONS_00039710","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr15",100,100,{"$nulls":24},"NonCoding",3.97,3.64,3.54,3.37,3.4,3.19]
["TC1000001556.rn.1",9.73,12.47,-6.681,"down",0.0244256973449185,0.0298444670871899,"damer","Unannotated AceView Transcript","chr10","+","damer.aSep08","Noncoding",85787549,85789137,30,null,"NA","damer.aSep08","Ace View","Unannotated AceView Transcript","chr10",100,100,{"$nulls":24},"NonCoding",10.11,9.55,9.53,12.03,12.6,12.78]
["TC0600001507.rn.1",3.94,4.65,-1.636,"down",0.024478206543815,0.0298800016689453,"KnowTID_00001500","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1200003306.mm","Noncoding",133722208,133723574,30,null,"NA","MTA_TR1200003306.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",4.2,3.6,4.03,4.36,4.41,5.18]
["TC1600000468.rn.1",3.95,4.32,-1.292,"down",0.0244950777837262,0.0298973938374855,null,null,"chr16","+",null,"Pseudogene",36417908,36418913,30,null,"NA","ENSRNOT00000017913","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:16:36218386:36219391:1 gene:ENSRNOG00000013405 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,{"$nulls":24},"Pseudogene",3.8,4,4.06,4.36,4.52,4.08]
["TC0600000950.rn.1",4.65,5.04,-1.31,"down",0.0244965520976876,0.0298973938374855,"NONMMUG009228","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001685.mm","Noncoding",94603316,94604619,30,null,"NA","MTA_TR1200001685.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",4.59,4.58,4.79,4.8,5.03,5.28]
["TC1600001567.rn.1",10.68,9.73,1.932,"up",0.0245545845023608,0.0299534892830414,"NONMMUG031278","Non-coding transcript identified by NONCODE: Linc","chr16","-","MTA_TR0400013681.mm","Noncoding",37500519,37500826,30,null,"NA","MTA_TR0400013681.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",10.49,10.71,10.85,9.74,9.82,9.64]
["TC0400001841.rn.1",4.11,3.7,1.329,"up",0.0245899723647234,0.0299851479141117,"XLOC_034099","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4","+","TCONS_00084202","Noncoding",160851450,160861784,40,null,"NA","TCONS_00084202","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4",100,100,{"$nulls":24},"NonCoding",4.13,4.36,3.85,3.79,3.54,3.78]
["TC0X00000461.rn.1",3.66,4.36,-1.625,"down",0.0246243059326061,0.0300111428018874,"NONMMUG045273","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00002345.mm","Noncoding",52223926,52226390,30,null,"NA","MTA_TR0X00002345.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",3.47,3.87,3.64,3.85,4.34,4.89]
["TC0400001751.rn.1",3.3,3.63,-1.257,"down",0.0246477357648211,0.0300333766814469,"C1sandRGD1561715","Chalmel, et. al. AceView Annotation C1sandRGD1561715.cSep08 Testis-expressed Unannotated Transcripts (TUTs)","chr4","+","TCONS_00084174","Noncoding",157047986,157051778,30,null,"NA","TCONS_00084174","Chalmel","Chalmel, et. al. AceView Annotation C1sandRGD1561715.cSep08 Testis-expressed Unannotated Transcripts (TUTs)","chr4",100,100,{"$nulls":24},"NonCoding",3.43,3.14,3.32,3.79,3.49,3.62]
["TC0500000958.rn.1",3.94,3.58,1.283,"up",0.0247505963152377,0.0301312361477324,"ENSMUSG00000085147","predicted gene 12609, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr5","+","MTA_TR0400002642.mm","Noncoding",107905985,107920131,40,null,"NA","MTA_TR0400002642.mm","MTA2Rn6","predicted gene 12609, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr5",100,100,{"$nulls":24},"NonCoding",4.11,4,3.71,3.54,3.58,3.62]
["TC0200002672.rn.1",3.38,3.72,-1.266,"down",0.0247534722762632,0.0301326255718968,"LOC102552262","uncharacterized LOC102552262","chr2","-","mRNARGD7518727_1","Noncoding",26366099,26369184,30,null,"NA","mRNARGD7518727_1","Rat Genome Database","uncharacterized LOC102552262","chr2",100,100,{"$nulls":24},"NonCoding",3.58,3.25,3.31,3.61,3.78,3.76]
["TC0100006057.rn.1",6.05,5.46,1.505,"up",0.0248360322698172,0.0302119549411061,"LOC499207","similar to 60S ribosomal protein L3 (L4)","chr1","-","LOC499207.aSep08-unspliced","Pseudogene",158339116,158340328,30,null,"NA","LOC499207.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L3 (L4)","chr1",100,100,{"$nulls":24},"Pseudogene",5.8,6.2,6.14,5.56,5.62,5.21]
["TC0400002036.rn.1",5.26,4.97,1.223,"up",0.024838820876584,0.0302132313876578,"ENSMUSG00000086731","predicted gene 7518, Non-coding transcript identified by NONCODE: Linc, novel transcript, antisense to Sox5","chr4","+","MTA_TR0600005722.mm","Noncoding",178975053,178976343,28,null,"NA","MTA_TR0600005722.mm","MTA2Rn6","predicted gene 7518, Non-coding transcript identified by NONCODE: Linc, novel transcript, antisense to Sox5","chr4",100,100,{"$nulls":24},"NonCoding",5.2,5.2,5.38,4.99,4.81,5.1]
["TC0300000679.rn.1",9.85,8.99,1.815,"up",0.0248525752908669,0.0302257288649198,"NONMMUG023180","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200003136.mm","Noncoding",48935125,48953111,21,null,"NA","MTA_TR0200003136.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",9.59,10.37,9.59,8.99,8.61,9.38]
["TC0100004301.rn.1",15.75,14.93,1.765,"up",0.0249591245255295,0.030310748890728,null,null,"chr1","-",null,"Pseudogene",35151638,35157157,30,null,"NA","ENSRNOT00000073945","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:36553353:36558872:-1 gene:ENSRNOG00000047117 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",15.48,16.33,15.45,14.72,15.11,14.97]
["TC0600001858.rn.1",3.49,3.2,1.223,"up",0.0249908495873325,0.0303429124331833,"NONMMUG019116","Non-coding transcript identified by NONCODE: Linc","chr6","-","MTA_TR1700009721.mm","Noncoding",10612190,10624078,30,null,"NA","MTA_TR1700009721.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",3.48,3.63,3.37,3.28,3.26,3.05]
["TC0800001707.rn.1",4.44,4.11,1.257,"up",0.0250152817784983,0.030368025457429,"NONMMUG044175","Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900005049.mm","Noncoding",126562620,126577017,30,null,"NA","MTA_TR0900005049.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",4.46,4.66,4.21,3.98,4.14,4.21]
["TC0300003001.rn.1",4.83,4.48,1.275,"up",0.0250669327427524,0.0304161559565767,"NONMMUG022760","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200012309.mm","Noncoding",22456136,22458778,30,null,"NA","MTA_TR0200012309.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.69,4.8,5.01,4.25,4.57,4.62]
["TC1500001796.rn.1",3.91,3.64,1.206,"up",0.0250824943715539,0.0304312491569873,"LOC102551780","uncharacterized LOC102551780","chr15","-","mRNARGD7715000_1","Noncoding",39295189,39309039,30,null,"NA","mRNARGD7715000_1","Rat Genome Database","uncharacterized LOC102551780","chr15",100,100,{"$nulls":24},"NonCoding",3.81,4.04,3.88,3.82,3.5,3.61]
["TC0300004318.rn.1",5.59,4.75,1.79,"up",0.025143419672336,0.0304834131161466,"LOC102547277","uncharacterized LOC102547277","chr3","-","mRNARGD7592227_1","Noncoding",138099424,138109499,30,null,"NA","mRNARGD7592227_1","Rat Genome Database","uncharacterized LOC102547277","chr3",100,100,{"$nulls":24},"NonCoding",5.31,5.66,5.8,4.92,4.46,4.87]
["TC1000004231.rn.1",4.74,4.31,1.347,"up",0.0251588992714445,0.0304979231852242,"LOC102555370","uncharacterized LOC102555370","chr10","-","mRNARGD7691300_1","Noncoding",108425923,108438963,30,null,"NA","mRNARGD7691300_1","Rat Genome Database","uncharacterized LOC102555370","chr10",100,100,{"$nulls":24},"NonCoding",4.91,4.56,4.76,4.05,4.49,4.39]
["TC1100000055.rn.1",5.03,5.99,-1.945,"down",0.0252853762654236,0.0306149209665208,"KnowTID_00003183","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600002918.mm","Noncoding",9568479,9571780,30,null,"NA","MTA_TR1600002918.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",5.25,4.83,5.01,5.57,5.75,6.64]
["TC0800000306.rn.1",3.26,3.69,-1.347,"down",0.0253609428526326,0.0306719151561934,"LOC102555202","uncharacterized LOC102555202","chr8","+","mRNARGD7675403_1","Noncoding",30125328,30134166,40,null,"NA","mRNARGD7675403_1","Rat Genome Database","uncharacterized LOC102555202","chr8",100,100,{"$nulls":24},"NonCoding",3.44,3.18,3.17,3.44,3.6,4.04]
["TC1300000644.rn.1",11.4,10.18,2.329,"up",0.025431097460496,0.0307335184351103,null,null,"chr13","+",null,"Pseudogene",82108107,82108342,30,null,"NA","ENSRNOT00000073761","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:86988124:86988359:1 gene:ENSRNOG00000049630 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",11.33,11.77,11.11,9.47,10.13,10.94]
["TC0100005595.rn.1",8.13,9.17,-2.056,"down",0.0255141632533421,0.0307825065893739,"LOC102554833","uncharacterized LOC102554833","chr1","-","mRNARGD7654106_1","Noncoding",119529014,119572920,80,null,"NA","mRNARGD7654106_1","Rat Genome Database","uncharacterized LOC102554833","chr1",100,100,{"$nulls":24},"NonCoding",8.06,8.16,8.17,9.15,8.96,9.41]
["TC0900000554.rn.1",3.94,4.48,-1.454,"down",0.0255619204943908,0.0308166042188033,"LOC102550015","uncharacterized LOC102550015","chr9","+","mRNARGD7526232_1","Noncoding",49051987,49073172,40,null,"NA","mRNARGD7526232_1","Rat Genome Database","uncharacterized LOC102550015","chr9",100,100,{"$nulls":24},"NonCoding",4,3.69,4.12,4.73,4.3,4.42]
["TC0400000674.rn.1",4.12,3.76,1.283,"up",0.0255737089193068,0.0308286535487355,"LOC102553590","uncharacterized LOC102553590","chr4","+","mRNARGD7563487_1","Noncoding",66900447,66912382,30,null,"NA","mRNARGD7563487_1","Rat Genome Database","uncharacterized LOC102553590","chr4",100,100,{"$nulls":24},"NonCoding",3.9,4.13,4.34,3.7,3.89,3.69]
["TC1900000061.rn.1",7.81,6.96,1.803,"up",0.0256815234312877,0.0309226012543516,"LOC102547668","uncharacterized LOC102547668","chr19","+","mRNARGD7552257_1","Noncoding",6090417,6106051,30,null,"NA","mRNARGD7552257_1","Rat Genome Database","uncharacterized LOC102547668","chr19",100,100,{"$nulls":24},"NonCoding",7.53,8.23,7.66,6.57,6.83,7.49]
["TC0200004715.rn.1",5.4,4.31,2.129,"up",0.0257846568139189,0.031014217376745,null,null,"chr2","-",null,"Pseudogene",237596769,237597275,30,null,"NA","ENSRNOT00000072479","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:256138399:256138905:-1 gene:ENSRNOG00000046435 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",5.38,5.81,5,4.21,4.51,4.21]
["TC0100006287.rn.1",4.09,4.43,-1.266,"down",0.0258259516092176,0.0310422505814918,"NONMMUG038939","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR0700013479.mm","Noncoding",170200624,170204704,30,null,"NA","MTA_TR0700013479.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",4.09,4.09,4.09,4.32,4.65,4.33]
["TC0600003019.rn.1",3.34,3.65,-1.24,"down",0.0258709724565655,0.0310873442131334,"LOC102551018","uncharacterized LOC102551018","chr6","-","mRNARGD7499520_1","Noncoding",124198104,124199771,30,null,"NA","mRNARGD7499520_1","Rat Genome Database","uncharacterized LOC102551018","chr6",100,100,{"$nulls":24},"NonCoding",3.43,3.24,3.36,3.66,3.44,3.86]
["TC0900001466.rn.1",4.52,5.03,-1.424,"down",0.0259314454873905,0.031134582496645,"NONMMUG018621","Non-coding transcript identified by NONCODE: Linc","chr9","-","MTA_TR1700003896.mm","Noncoding",10445373,10446619,30,null,"NA","MTA_TR1700003896.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",4.54,4.64,4.37,5.26,5.14,4.68]
["TC1200001154.rn.1",3.89,3.54,1.275,"up",0.0259359742563677,0.031137867772988,"NONMMUG034194","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","-","MTA_TR0500006124.mm","Noncoding",15125702,15128163,30,null,"NA","MTA_TR0500006124.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",4.12,3.64,3.91,3.55,3.42,3.66]
["TC0500004082.rn.1",3.78,4.22,-1.357,"down",0.0260005247297403,0.0311873439497527,"NONMMUG031396","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr5","-","MTA_TR0400013996.mm","Noncoding",166517639,166518664,26,null,"NA","MTA_TR0400013996.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr5",100,100,{"$nulls":24},"NonCoding",3.8,3.92,3.61,4.33,4.35,3.99]
["TC1400000668.rn.1",6.91,9.41,-5.657,"down",0.0260156958510173,0.0311990785383515,"NONMMUG032430","Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR0500008463.mm","Noncoding",65556956,65558281,30,null,"NA","MTA_TR0500008463.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",7.03,6.44,7.27,8.73,9.25,10.24]
["TC1000000744.rn.1",4.69,4.37,1.248,"up",0.0260618600865117,0.0312350332249755,"NONMMUG006280","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","+","MTA_TR1100002503.mm","Noncoding",46537167,46539643,30,null,"NA","MTA_TR1100002503.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",4.62,4.66,4.8,4.34,4.19,4.58]
["TC1700001632.rn.1",15.75,15,1.682,"up",0.0261511278777529,0.0313009905748693,null,null,"chr17","-",null,"Pseudogene",29862563,29868064,30,null,"NA","ENSRNOT00000074537","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:17:31762247:31767748:-1 gene:ENSRNOG00000045578 gene_biotype:pseudogene transcript_biotype:pseudogene","chr17",100,100,{"$nulls":24},"Pseudogene",15.54,16.35,15.35,14.74,15.08,15.17]
["TC0700000653.rn.1",4.21,4.7,-1.404,"down",0.0262113581024353,0.0313557951654434,"NONMMUG004635","Non-coding transcript identified by NONCODE: Antisense","chr7","+","MTA_TR1000004029.mm","Noncoding",50367776,50373107,30,null,"NA","MTA_TR1000004029.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr7",100,100,{"$nulls":24},"NonCoding",3.94,4.39,4.3,4.47,4.59,5.04]
["TC1400000238.rn.1",9.7,8.77,1.905,"up",0.0262382059466231,0.0313814290483882,"NONMMUG033005","Non-coding transcript identified by NONCODE: Antisense","chr14","+","MTA_TR0500009611.mm","Noncoding",16372193,16373748,30,null,"NA","MTA_TR0500009611.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr14",100,100,{"$nulls":24},"NonCoding",9.69,9.59,9.82,8.67,8.8,8.83]
["TC0500002739.rn.1",8.75,8.28,1.385,"up",0.026304256070826,0.0314301301558893,null,null,"chr5","-",null,"Pseudogene",69106738,69107186,30,null,"NA","ENSRNOT00000007507","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:73542665:73543113:-1 gene:ENSRNOG00000005694 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",8.76,8.72,8.78,8.2,8.49,8.15]
["TC0400002989.rn.1",6.81,7.98,-2.25,"down",0.0263166732779517,0.0314428042858036,"KnowTID_00006321","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4","-","MTA_TR0600007844.mm","Noncoding",89687860,89688828,30,null,"NA","MTA_TR0600007844.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",7.01,7.05,6.36,8.36,8.41,7.18]
["TC0300000752.rn.1",6.04,5.19,1.803,"up",0.0263644908855393,0.0314761217300827,"NONMMUG023281","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200003268.mm","Noncoding",55184121,55184986,30,null,"NA","MTA_TR0200003268.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",5.96,6.4,5.77,4.93,5.06,5.59]
["TC1000002248.rn.1",11.26,12.33,-2.099,"down",0.0264000249633583,0.0315163791930793,null,null,"chr10","-",null,"Noncoding",7091238,7092494,30,null,"NA","NONRATT010405","NONCODE","Non-coding transcript identified by NONCODE","chr10",100,100,{"$nulls":24},"NonCoding",11.25,11.21,11.32,12.23,12.56,12.21]
["TC0100005504.rn.1",3.17,3.66,-1.404,"down",0.0264627182606088,0.0315777613795632,"NONMMUG038121","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR0700011320.mm","Noncoding",112697126,112698900,21,null,"NA","MTA_TR0700011320.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",3.43,2.97,3.1,3.94,3.3,3.75]
["TC0400002763.rn.1",4.79,3.94,1.803,"up",0.0265155735514292,0.0316195529732873,"LOC100911560","uncharacterized LOC100911560","chr4","-","mRNARGD7592651_1","Noncoding",70039937,70045631,30,null,"NA","mRNARGD7592651_1","Rat Genome Database","uncharacterized LOC100911560","chr4",100,100,{"$nulls":24},"NonCoding",4.74,5.41,4.22,3.98,3.71,4.12]
["TC0200003065.rn.1",7.8,6,3.482,"up",0.0265473731666206,0.0316425470212069,null,null,"chr2","-",null,"Noncoding",59736464,59736893,30,null,"NA","NONRATT031050","NONCODE","Non-coding transcript identified by NONCODE","chr2",100,100,{"$nulls":24},"NonCoding",7.43,9.13,6.85,5.91,5.67,6.42]
["TC0500001203.rn.1",4.2,5.01,-1.753,"down",0.0265977067383039,0.0316892156207872,"NONMMUG030232","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","+","MTA_TR0400003621.mm","Noncoding",130517783,130520781,30,null,"NA","MTA_TR0400003621.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",4.42,4.11,4.06,4.9,5.01,5.11]
["TC1000001819.rn.1",3.99,3.63,1.283,"up",0.0266419900894117,0.0317296526793895,"ENSMUSG00000085245","predicted gene 11713, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr10","+","MTA_TR1100006889.mm","Noncoding",95638473,95641295,30,null,"NA","MTA_TR1100006889.mm","MTA2Rn6","predicted gene 11713, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr10",100,100,{"$nulls":24},"NonCoding",4.18,3.93,3.87,3.57,3.46,3.87]
["TC0600000450.rn.1",14.13,13.31,1.765,"up",0.0266506251147763,0.0317370267271392,null,null,"chr6","+",null,"Pseudogene",38771363,38773042,30,null,"NA","ENSRNOT00000071165","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:47535707:47537386:1 gene:ENSRNOG00000049048 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",13.82,14.86,13.71,13.2,13.1,13.63]
["TC0800003276.rn.1",3.54,3.82,-1.214,"down",0.0267426010668616,0.031811663571352,"LOC102550226","uncharacterized LOC102550226","chr8","-","mRNARGD7532274_1","Noncoding",111871967,111881162,40,null,"NA","mRNARGD7532274_1","Rat Genome Database","uncharacterized LOC102550226","chr8",100,100,{"$nulls":24},"NonCoding",3.37,3.65,3.61,3.78,3.78,3.9]
["TC0100004164.rn.1",6.98,5.98,2,"up",0.0267779032733226,0.0318492952934534,"NONMMUG003250","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR1000000747.mm","Noncoding",21042598,21044908,30,null,"NA","MTA_TR1000000747.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",6.52,6.97,7.45,5.93,5.99,6.01]
["TC2000000593.rn.1",7.56,7.02,1.454,"up",0.0268506945396407,0.0319140208585767,null,null,"chr20","+",null,"Pseudogene",23716377,23716720,30,null,"NA","ENSRNOT00000040289","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:25796979:25797322:1 gene:ENSRNOG00000033677 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",7.82,7.44,7.42,6.88,7.43,6.76]
["TC1500001192.rn.1",7.64,6.2,2.713,"up",0.0268556841611969,0.031917767485232,null,null,"chr15","+",null,"Pseudogene",107749643,107750129,30,null,"NA","ENSRNOT00000071854","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:111141672:111142158:1 gene:ENSRNOG00000049440 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",7.37,8.4,7.14,6.15,6.57,5.87]
["TC0600000346.rn.1",5.57,4.84,1.659,"up",0.0269937559089593,0.0319384773756663,"NONMMUG008440","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200000203.mm","Noncoding",29056928,29060514,30,null,"NA","MTA_TR1200000203.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",5.36,5.54,5.82,4.97,4.43,5.11]
["TC1500000825.rn.1",6.93,5.53,2.639,"up",0.0270018121431717,0.0319384773756663,"LOC102547472","uncharacterized LOC102547472","chr15","+","mRNARGD7714529_1","Noncoding",55499962,55500911,28,null,"NA","mRNARGD7714529_1","Rat Genome Database","uncharacterized LOC102547472","chr15",100,100,{"$nulls":24},"NonCoding",6.39,7.22,7.19,4.99,5.77,5.84]
["TC1800000767.rn.1",7.49,6.45,2.056,"up",0.0270449783781304,0.0319765642200128,"NONMMUG020234","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18","+","MTA_TR1800002230.mm","Noncoding",65177133,65181987,30,null,"NA","MTA_TR1800002230.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18",100,100,{"$nulls":24},"NonCoding",7.12,7.59,7.75,6.12,5.88,7.35]
["TC1700001041.rn.1",4.63,4.02,1.526,"up",0.0270507754927148,0.0319811489201626,"NONMMUG022010","Non-coding transcript identified by NONCODE: Antisense","chr17","+","MTA_TR0200000512.mm","Noncoding",80464670,80465010,30,null,"NA","MTA_TR0200000512.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr17",100,100,{"$nulls":24},"NonCoding",4.54,5.03,4.33,3.75,4.33,3.97]
["TC0300000667.rn.1",4.08,3.67,1.329,"up",0.0271830425449758,0.0320829346411724,"NONMMUG023147","Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200003063.mm","Noncoding",47397034,47403272,30,null,"NA","MTA_TR0200003063.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",4.01,4.21,4.01,3.57,3.44,4.01]
["TC1700001240.rn.1",4.47,4.79,-1.248,"down",0.027196818662904,0.0320948326761756,"LOC102548658","uncharacterized LOC102548658","chr17","-","mRNARGD7634064_1","Noncoding",5823774,5830499,40,null,"NA","mRNARGD7634064_1","Rat Genome Database","uncharacterized LOC102548658","chr17",100,100,{"$nulls":24},"NonCoding",4.52,4.5,4.39,5.07,4.69,4.61]
["TC1500001337.rn.1",16.01,15.32,1.613,"up",0.0272501539270662,0.0321374584375803,null,null,"chr15","-",null,"Pseudogene",10618289,10621569,30,null,"NA","ENSRNOT00000074872","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:14662549:14665829:-1 gene:ENSRNOG00000047559 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",15.7,16.66,15.68,15.29,15.43,15.25]
["TC0400002086.rn.1",4.52,3.99,1.444,"up",0.0272528232030874,0.0321374584375803,"MGI:1924094","RIKEN cDNA 3010003L21 gene","chr4","+","MTA_TR0600005912.mm","Noncoding",183426292,183427144,30,null,"NA","MTA_TR0600005912.mm","MTA2Rn6","RIKEN cDNA 3010003L21 gene","chr4",100,100,{"$nulls":24},"NonCoding",4.42,4.71,4.42,3.88,3.99,4.1]
["TC0600000751.rn.1",16.29,15.91,1.301,"up",0.0272840889924096,0.0321628603343612,null,null,"chr6","+",null,"Noncoding",72626969,72627086,30,null,"NA","NONRATT046748","NONCODE","Non-coding transcript identified by NONCODE","chr6",100,100,{"$nulls":24},"NonCoding",16.22,16.48,16.17,16.03,15.93,15.78]
["TC1200001641.rn.1",3.71,4.07,-1.283,"down",0.0273067264371783,0.0321851774284316,"NONMMUG033651","Non-coding transcript identified by NONCODE: Antisense","chr12","-","MTA_TR0500004588.mm","Noncoding",41414131,41415736,30,null,"NA","MTA_TR0500004588.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr12",100,100,{"$nulls":24},"NonCoding",3.83,3.69,3.62,4.2,4.08,3.93]
["TC1300000449.rn.1",4.99,4.5,1.404,"up",0.0273510717524782,0.0322221408892709,"NONMMUG002001","Non-coding transcript identified by NONCODE: Antisense","chr13","+","MTA_TR0100004409.mm","Noncoding",67677098,67679140,60,null,"NA","MTA_TR0100004409.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr13",100,100,{"$nulls":24},"NonCoding",4.96,5.21,4.81,4.57,4.56,4.36]
["TC0400001437.rn.1",4.51,3.87,1.558,"up",0.0273622220569388,0.032230905224865,"NONMMUG036053","Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0600003773.mm","Noncoding",124879166,124879949,30,null,"NA","MTA_TR0600003773.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",4.48,4.78,4.26,3.7,3.71,4.21]
["TC0500003649.rn.1",3.84,3.57,1.206,"up",0.0274360553921263,0.0322809444071101,"LOC102550949","uncharacterized LOC102550949","chr5","-","mRNARGD7544394_1","Noncoding",146909251,146922268,30,null,"NA","mRNARGD7544394_1","Rat Genome Database","uncharacterized LOC102550949","chr5",100,100,{"$nulls":24},"NonCoding",3.8,3.85,3.86,3.54,3.4,3.76]
["TC0100004106.rn.1",4.77,5.13,-1.283,"down",0.0274411541191155,0.0322844760042774,"LOC102547808","uncharacterized LOC102547808","chr1","-","mRNARGD7583296_1","Noncoding",16276558,16373844,90,null,"NA","mRNARGD7583296_1","Rat Genome Database","uncharacterized LOC102547808","chr1",100,100,{"$nulls":24},"NonCoding",4.82,4.84,4.66,5.32,5.01,5.07]
["TC1500002024.rn.1",4.39,3.72,1.591,"up",0.0274971029785075,0.0323284044561525,"KnowTID_00002509","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15","-","MTA_TR1400007405.mm","Noncoding",53577759,53578325,30,null,"NA","MTA_TR1400007405.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",4.42,4.38,4.37,3.92,3.64,3.6]
["TC0100002427.rn.1",4.99,3.24,3.364,"up",0.0275367542265474,0.0323662600764162,null,null,"chr1","+",null,"Pseudogene",183568008,183568768,30,null,"NA","ENSRNOT00000071845","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:190538635:190539395:1 gene:ENSRNOG00000047929 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",4.22,6.01,4.73,2.98,3.31,3.43]
["TC0700002115.rn.1",4.6,4.18,1.338,"up",0.0277049606357248,0.0325045840337144,"NONMMUG004166","Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1000002967.mm","Noncoding",11319661,11320806,30,null,"NA","MTA_TR1000002967.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",4.72,4.8,4.27,4.36,4.09,4.09]
["TC1300001985.rn.1",3.81,4.19,-1.301,"down",0.0277558927223003,0.0325538510656859,"NONMMUG002500","Non-coding transcript identified by NONCODE: Antisense","chr13","-","MTA_TR0100011575.mm","Noncoding",92569251,92571368,30,null,"NA","MTA_TR0100011575.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr13",100,100,{"$nulls":24},"NonCoding",3.9,3.92,3.61,4.41,4.06,4.09]
["TC1000001558.rn.1",9.84,12.92,-8.456,"down",0.0278650504506309,0.0326593206516368,"KnowTID_00001185","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1100005827.mm","Noncoding",85792495,85793171,30,null,"NA","MTA_TR1100005827.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",10.18,9.39,9.94,12.89,12.95,12.92]
["TC1000001675.rn.1",4.51,4.18,1.257,"up",0.0279595647579991,0.0327524175204803,"ENSMUSG00000085594","predicted gene 11551, Non-coding transcript identified by NONCODE: Antisense, novel transcript, antisense to Meox1","chr10","+","MTA_TR1100006405.mm","Noncoding",89806660,89813021,30,null,"NA","MTA_TR1100006405.mm","MTA2Rn6","predicted gene 11551, Non-coding transcript identified by NONCODE: Antisense, novel transcript, antisense to Meox1","chr10",100,100,{"$nulls":24},"NonCoding",4.5,4.7,4.33,4.05,4.12,4.38]
["TC0100006033.rn.1",5.53,6.23,-1.625,"down",0.028024228592122,0.0328081848504219,"ENSMUSG00000099001","DLG2 antisense RNA 1 conserved region 1","chr1","-","MTA_TR0700012756.mm","Noncoding",155181753,155181959,30,null,"NA","MTA_TR0700012756.mm","MTA2Rn6","DLG2 antisense RNA 1 conserved region 1","chr1",100,100,{"$nulls":24},"NonCoding",5.7,5.7,5.18,5.93,5.95,6.82]
["TC0700003099.rn.1",3,3.35,-1.275,"down",0.0281060810545576,0.0328736532236642,"NONMMUG014485","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004454.mm","Noncoding",87663446,87664563,30,null,"NA","MTA_TR1500004454.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",3.03,3.09,2.88,3.08,3.36,3.61]
["TC0200004883.rn.1",4.75,5.13,-1.301,"down",0.0281088647517306,0.0328736532236642,"NONMMUG028231","Non-coding transcript identified by NONCODE: Linc,  12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530021L15 product:unclassifiable, full insert sequence.","chr2","-","MTA_TR0300010362.mm","Noncoding",254371317,254532628,70,null,"NA","MTA_TR0300010362.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc,  12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530021L15 product:unclassifiable, full insert sequence.","chr2",100,100,{"$nulls":24},"NonCoding",4.74,4.75,4.75,4.93,5,5.47]
["TC0200001693.rn.1",4.38,4.06,1.248,"up",0.0281119231880328,0.0328736532236642,"NONMMUG027229","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2","+","MTA_TR0300002814.mm","Noncoding",195944630,195946939,30,null,"NA","MTA_TR0300002814.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2",100,100,{"$nulls":24},"NonCoding",4.54,4.46,4.13,4.04,3.95,4.2]
["TC0800001626.rn.1",4.12,5.09,-1.959,"down",0.0281608388337822,0.0329127317083786,"NONMMUG044060","Non-coding transcript identified by NONCODE: Antisense","chr8","+","MTA_TR0900004869.mm","Noncoding",120484449,120485212,30,null,"NA","MTA_TR0900004869.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr8",100,100,{"$nulls":24},"NonCoding",4.09,3.95,4.32,4.82,4.53,5.93]
["TC0800003096.rn.1",10.85,10.02,1.778,"up",0.0281941486717113,0.0329427965679893,"LOC680372","similar to 40S ribosomal protein S16","chr8","-","LOC680372.aSep08-unspliced","Pseudogene",96570431,96570924,30,null,"NA","LOC680372.aSep08-unspliced","Ace View","similar to 40S ribosomal protein S16","chr8",100,100,{"$nulls":24},"Pseudogene",10.96,10.65,10.94,10.39,10.29,9.39]
["TC1900001747.rn.1",5.65,6.11,-1.376,"down",0.0282784946490785,0.0330152595726663,"LOC102555939","uncharacterized LOC102555939","chr19","-","mRNARGD7693794_1","Noncoding",47694504,47753826,40,null,"NA","mRNARGD7693794_1","Rat Genome Database","uncharacterized LOC102555939","chr19",100,100,{"$nulls":24},"NonCoding",5.57,5.81,5.58,5.98,5.92,6.42]
["TC1800000332.rn.1",4.92,5.31,-1.31,"down",0.0283829560348047,0.0331021791222649,"NONMMUG019707","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18","+","MTA_TR1800001159.mm","Noncoding",30433002,30434401,30,null,"NA","MTA_TR1800001159.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18",100,100,{"$nulls":24},"NonCoding",5.02,4.71,5.02,5.52,5.19,5.21]
["TC0600000066.rn.1",10.23,10.6,-1.292,"down",0.028527847256707,0.0332499486511176,"LOC500610","similar to proteaseome (prosome, macropain) 28 subunit, 3","chr6","+","LOC500610.aSep08-unspliced","Pseudogene",6180030,6180938,30,null,"NA","LOC500610.aSep08-unspliced","Ace View","similar to proteaseome (prosome, macropain) 28 subunit, 3","chr6",100,100,{"$nulls":24},"Pseudogene",9.98,10.3,10.41,10.44,10.65,10.71]
["TC0800000080.rn.1",4.05,3.75,1.231,"up",0.0285391186301868,0.0332608540573616,"LOC100909684","uncharacterized LOC100909684","chr8","+","mRNARGD6502404_1","Noncoding",10981465,10987979,77,null,"NA","mRNARGD6502404_1","Rat Genome Database","uncharacterized LOC100909684","chr8",100,100,{"$nulls":24},"NonCoding",4.24,3.98,3.93,3.57,3.79,3.89]
["TC0900001332.rn.1",5.38,5.84,-1.376,"down",0.0286107751752754,0.033317542104291,"NONMMUG018798","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","+","MTA_TR1700004181.mm","Noncoding",118731865,118732431,30,null,"NA","MTA_TR1700004181.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",5.43,5.43,5.29,5.6,5.66,6.27]
["TC0500002991.rn.1",5.11,6.65,-2.908,"down",0.0286163661735685,0.0333195855487002,"NONMMUG029627","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400009922.mm","Noncoding",94987466,94991829,30,null,"NA","MTA_TR0400009922.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",5.23,4.99,5.1,5.89,6.06,8.01]
["TC1300000468.rn.1",4.21,3.79,1.338,"up",0.0286608119206767,0.0333513829605668,"NONMMUG002029","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr13","+","MTA_TR0100004456.mm","Noncoding",69119372,69124269,30,null,"NA","MTA_TR0100004456.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr13",100,100,{"$nulls":24},"NonCoding",3.96,4.61,4.07,3.75,3.85,3.77]
["TC1100000396.rn.1",5.14,5.64,-1.414,"down",0.0286659347649745,0.0333527094978146,"NONMMUG016790","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","+","MTA_TR1600006139.mm","Noncoding",42068191,42069266,30,null,"NA","MTA_TR1600006139.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",5.19,4.81,5.43,5.73,5.45,5.75]
["TC0200003119.rn.1",3.77,4.1,-1.257,"down",0.0288095181920784,0.0334816713960063,"KnowTID_00002895","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR1500003879.mm","Noncoding",69278648,69415246,50,null,"NA","MTA_TR1500003879.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",3.85,3.85,3.62,4.3,3.85,4.14]
["TC1100000866.rn.1",5.09,4.59,1.414,"up",0.0288885371659052,0.0335564037861113,"LOC102553819","uncharacterized LOC102553819","chr11","+","mRNARGD7597650_1","Noncoding",79944428,79945126,25,null,"NA","mRNARGD7597650_1","Rat Genome Database","uncharacterized LOC102553819","chr11",100,100,{"$nulls":24},"NonCoding",4.95,5.4,4.93,4.36,4.42,4.98]
["TC1400002050.rn.1",4.7,4.27,1.347,"up",0.0290928086579419,0.0337476580432126,"NONMMUG005234","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","-","MTA_TR1100008558.mm","Noncoding",79085562,79087333,30,null,"NA","MTA_TR1100008558.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",4.66,4.87,4.58,4.15,4.01,4.64]
["TC1100001946.rn.1",4.99,3.42,2.969,"up",0.0291018098959937,0.0337558453327528,"LOC102547398","uncharacterized LOC102547398","chr11","-","mRNARGD7654034_1","Noncoding",84148796,84150144,30,null,"NA","mRNARGD7654034_1","Rat Genome Database","uncharacterized LOC102547398","chr11",100,100,{"$nulls":24},"NonCoding",5.1,4.7,5.17,3.29,3.39,3.57]
["TC0300004252.rn.1",4.51,5.82,-2.479,"down",0.0291969749662011,0.0338436308646656,"NONMMUG024821","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200016697.mm","Noncoding",129112625,129112879,30,null,"NA","MTA_TR0200016697.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.42,4.83,4.28,5.15,5.47,6.84]
["TC0100004456.rn.1",4.23,3.79,1.357,"up",0.0292217935535419,0.0338678793580582,"NCBI_Gene:100862021","PREDICTED:  uncharacterized LOC100862021 (LOC100862021), miscRNA.","chr1","-","MTA_TR1700000445.mm","Noncoding",48263688,48277394,30,null,"NA","MTA_TR1700000445.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862021 (LOC100862021), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",4.53,4.14,4.01,3.91,3.67,3.78]
["TC1600001307.rn.1",6.42,8.24,-3.531,"down",0.0293420214922032,0.033962956031651,"NONMMUG012677","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","-","MTA_TR1400005584.mm","Noncoding",16620228,16622754,30,null,"NA","MTA_TR1400005584.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",6.44,5.83,6.98,7.92,7.87,8.94]
["TC0400002822.rn.1",3.91,3.11,1.741,"up",0.0293597081070382,0.033977847403555,"NONMMUG035235","Non-coding transcript identified by NONCODE: Linc","chr4","-","MTA_TR0600007301.mm","Noncoding",77391196,77410592,30,null,"NA","MTA_TR0600007301.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",4.03,4.37,3.32,2.93,3.19,3.21]
["TC0900001430.rn.1",10.51,12.06,-2.928,"down",0.0295082337017128,0.0341160232572546,"LOC102555748","uncharacterized LOC102555748","chr9","-","mRNARGD7655426_1","Noncoding",8577832,8604757,30,null,"NA","mRNARGD7655426_1","Rat Genome Database","uncharacterized LOC102555748","chr9",100,100,{"$nulls":24},"NonCoding",10.32,10.69,10.53,11.86,12.25,12.08]
["TC1500001322.rn.1",16.58,15.94,1.558,"up",0.0295818590333332,0.0341780161801151,null,null,"chr15","-",null,"Pseudogene",8477897,8481179,30,null,"NA","ENSRNOT00000074501","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:12540342:12543624:-1 gene:ENSRNOG00000049647 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",16.38,17.17,16.18,16.01,16.05,15.75]
["TC0800003078.rn.1",4.92,4.61,1.24,"up",0.0296456276105579,0.0342179251322247,null,null,"chr8","-",null,"Pseudogene",95893712,95894097,30,null,"NA","ENSRNOT00000075245","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:95390577:95390962:-1 gene:ENSRNOG00000045766 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",5.14,4.78,4.84,4.58,4.71,4.54]
["TC1000002641.rn.1",2.72,3.03,-1.24,"down",0.0296488653633987,0.03421901802057,"LOC102551767","uncharacterized LOC102551767","chr10","-","mRNARGD7680467_1","Noncoding",31146811,31148796,30,null,"NA","mRNARGD7680467_1","Rat Genome Database","uncharacterized LOC102551767","chr10",100,100,{"$nulls":24},"NonCoding",2.79,2.85,2.52,3.16,3.09,2.85]
["TC0200001490.rn.1",4.01,4.58,-1.485,"down",0.0297552561694352,0.0343121717285753,"LOC102552613","uncharacterized LOC102552613","chr2","+","mRNARGD7600812_1","Noncoding",184178823,184179915,30,null,"NA","mRNARGD7600812_1","Rat Genome Database","uncharacterized LOC102552613","chr2",100,100,{"$nulls":24},"NonCoding",4.18,4.22,3.64,4.18,4.67,4.9]
["TC0600002722.rn.1",6.07,5.59,1.395,"up",0.0298650260971086,0.0344204729520219,"LOC100909680","uncharacterized LOC100909680","chr6","-","mRNARGD6502381_1","Noncoding",101864578,101873464,30,null,"NA","mRNARGD6502381_1","Rat Genome Database","uncharacterized LOC100909680","chr6",100,100,{"$nulls":24},"NonCoding",5.88,6.45,5.87,5.62,5.61,5.53]
["TC0900000827.rn.1",5.65,5.33,1.248,"up",0.0299134557806671,0.0344545546820244,"NCBI_Gene:100862127","PREDICTED:  uncharacterized LOC100862127 (LOC100862127), miscRNA.","chr9","+","MTA_TR0100001756.mm","Noncoding",73829678,73838700,30,null,"NA","MTA_TR0100001756.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862127 (LOC100862127), miscRNA.","chr9",100,100,{"$nulls":24},"NonCoding",5.74,5.78,5.43,5.17,5.43,5.39]
["TC0700000776.rn.1",5.78,4.92,1.815,"up",0.0299278684740702,0.0344677453598802,"NONMMUG004812","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr7","+","MTA_TR1000004425.mm","Noncoding",61404597,61415766,24,null,"NA","MTA_TR1000004425.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr7",100,100,{"$nulls":24},"NonCoding",5.86,6.12,5.36,4.73,5.05,4.98]
["TC0800001478.rn.1",4.65,4.38,1.206,"up",0.0299841610386747,0.0345165580783842,"NONMMUG043870","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","+","MTA_TR0900004193.mm","Noncoding",115076224,115076605,30,null,"NA","MTA_TR0900004193.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",4.75,4.68,4.51,4.48,4.2,4.45]
["TC0X00001824.rn.1",3.81,4.47,-1.58,"down",0.0299995385707766,0.0345258950504901,"NONMMUG045324","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00007174.mm","Noncoding",56909954,56912711,30,null,"NA","MTA_TR0X00007174.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",3.92,3.72,3.79,4.3,4.07,5.05]
["TC0200002541.rn.1",9.48,11.2,-3.294,"down",0.0300264787474101,0.0345354868518863,"NONMMUG011500","Non-coding transcript identified by NONCODE: Antisense","chr2","-","MTA_TR1300006787.mm","Noncoding",11819596,11823199,30,null,"NA","MTA_TR1300006787.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",9.73,9.41,9.3,11.03,11.19,11.39]
["TC0500003166.rn.1",4.55,3.9,1.569,"up",0.030061829810086,0.0345677780828547,"LOC102551440","uncharacterized LOC102551440","chr5","-","mRNARGD7704853_1","Noncoding",114719200,114735103,60,null,"NA","mRNARGD7704853_1","Rat Genome Database","uncharacterized LOC102551440","chr5",100,100,{"$nulls":24},"NonCoding",4.43,4.5,4.71,3.92,3.78,3.99]
["TC0800002953.rn.1",4.52,4.11,1.329,"up",0.030103838796404,0.0345947197494267,"NONMMUG043379","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","-","MTA_TR0900008661.mm","Noncoding",83451107,83465558,30,null,"NA","MTA_TR0900008661.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",4.45,4.72,4.39,4.18,4.03,4.11]
["TC0600003162.rn.1",4.85,5.2,-1.275,"down",0.0301239304576411,0.0346155186862263,"NONMMUG045333","Non-coding transcript identified by NONCODE: Linc","chr6","-","MTA_TR0X00002398.mm","Noncoding",133658934,133662606,70,null,"NA","MTA_TR0X00002398.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",4.74,4.88,4.93,5.03,5.29,5.27]
["TC1800000199.rn.1",5.28,4.96,1.248,"up",0.0301370026433933,0.0346190895991526,"LOC102546470","uncharacterized LOC102546470","chr18","+","mRNARGD7732431_1","Noncoding",21253993,21258524,30,null,"NA","mRNARGD7732431_1","Rat Genome Database","uncharacterized LOC102546470","chr18",100,100,{"$nulls":24},"NonCoding",5.2,5.36,5.28,5.21,4.91,4.76]
["TC0500003888.rn.1",4.81,4.54,1.206,"up",0.0301586865441174,0.0346348369666709,"NONMMUG031070","Non-coding transcript identified by NONCODE: Antisense","chr5","-","MTA_TR0400013151.mm","Noncoding",156071253,156072242,53,null,"NA","MTA_TR0400013151.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",4.94,4.87,4.62,4.53,4.41,4.68]
["TC0900001647.rn.1",5.56,5.23,1.257,"up",0.0302269693232464,0.0346788642833441,"NONMMUG018376","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr9","-","MTA_TR1700003239.mm","Noncoding",19443362,19445135,30,null,"NA","MTA_TR1700003239.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr9",100,100,{"$nulls":24},"NonCoding",5.5,5.4,5.77,5.38,5.02,5.28]
["TC0900000266.rn.1",3.75,3.43,1.248,"up",0.0302862965420616,0.0347262876060826,"NONMMUG018385","Non-coding transcript identified by NONCODE: Antisense,Sense No Exonic","chr9","+","MTA_TR1700007957.mm","Noncoding",18584108,18589194,30,null,"NA","MTA_TR1700007957.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense,Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",3.73,3.76,3.76,3.49,3.45,3.35]
["TC1500001325.rn.1",5.11,6.29,-2.266,"down",0.0302929078298237,0.0347292833891148,"NONMMUG012271","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15","-","MTA_TR1400000438.mm","Noncoding",9227570,9230376,30,null,"NA","MTA_TR1400000438.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15",100,100,{"$nulls":24},"NonCoding",5.15,4.47,5.72,5.82,5.95,7.1]
["TC0900001212.rn.1",4.13,3.86,1.206,"up",0.0303334994534371,0.0347551757143761,"LOC102552807","uncharacterized LOC102552807","chr9","+","mRNARGD7507853_1","Noncoding",103525841,103557128,30,null,"NA","mRNARGD7507853_1","Rat Genome Database","uncharacterized LOC102552807","chr9",100,100,{"$nulls":24},"NonCoding",4.33,4.02,4.03,3.75,3.95,3.87]
["TC1100001354.rn.1",4.56,5.03,-1.385,"down",0.0304145167719772,0.0348250326838057,"LOC102546823","uncharacterized LOC102546823","chr11","-","mRNARGD7570003_1","Noncoding",34330820,34334557,40,null,"NA","mRNARGD7570003_1","Rat Genome Database","uncharacterized LOC102546823","chr11",100,100,{"$nulls":24},"NonCoding",4.59,4.56,4.53,4.79,4.8,5.49]
["TC2000000791.rn.1",5.38,4.51,1.828,"up",0.0304550228372969,0.0348576267843898,"LOC679765","similar to M phase phosphoprotein 6","chr20","+","ENSRNOT00000074813","Pseudogene",44157194,44158484,30,"20q12",679765,"ENSRNOT00000074813","ENSEMBL","ensembl:known chromosome:Rnor_5.0:20:45882273:45882715:1 gene:ENSRNOG00000050227 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,null,null,"ENSRNOT00000074813","Rn.233406","ovary| juvenile",{"$nulls":19},"Pseudogene",5.24,5.84,5.05,4.47,4.44,4.63]
["TC0800001219.rn.1",4.51,4.21,1.231,"up",0.0304893546175439,0.0348739434425071,"LOC102555138","uncharacterized LOC102555138","chr8","+","mRNARGD7582751_1","Noncoding",91417784,91423364,40,null,"NA","mRNARGD7582751_1","Rat Genome Database","uncharacterized LOC102555138","chr8",100,100,{"$nulls":24},"NonCoding",4.63,4.63,4.26,4.26,4.18,4.2]
["TC1700001188.rn.1",5.74,5.19,1.464,"up",0.0305454771970988,0.0349220405680402,"NONMMUG011256","Non-coding transcript identified by NONCODE: Linc","chr17","-","MTA_TR1300006150.mm","Noncoding",1871333,1872404,30,null,"NA","MTA_TR1300006150.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",5.9,5.77,5.55,4.9,5.42,5.25]
["TC0600001682.rn.1",4.81,5.48,-1.591,"down",0.0305565370446159,0.0349277887084308,"NONMMUG010125","Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1200003811.mm","Noncoding",144248652,144249576,30,null,"NA","MTA_TR1200003811.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",4.84,4.99,4.61,5.56,5.26,5.62]
["TC0300001184.rn.1",3.63,3.32,1.24,"up",0.0305992909989981,0.0349536584430589,"uc029ubs.1","RNA for germline small RNA gsRNA19, complete sequence.","chr3","+","MTA_TR0200004680.mm","Noncoding",81468293,81468339,23,null,"NA","MTA_TR0200004680.mm","MTA2Rn6","RNA for germline small RNA gsRNA19, complete sequence.","chr3",100,100,{"$nulls":24},"NonCoding",3.75,3.44,3.7,3.44,3.22,3.3]
["TC0700003204.rn.1",2.61,2.92,-1.24,"down",0.0306289548536534,0.0349760435684205,"uc029spg.1","RNA for germline small RNA gsRNA245, complete sequence.","chr7","-","MTA_TR1500004724.mm","Noncoding",99548518,99548571,30,null,"NA","MTA_TR1500004724.mm","MTA2Rn6","RNA for germline small RNA gsRNA245, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",2.67,2.56,2.59,2.82,3.2,2.75]
["TC1600001923.rn.1",3.8,3.46,1.266,"up",0.0306649012652119,0.0349948241344993,"KnowTID_00006987","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16","-","MTA_TR0800000841.mm","Noncoding",74669094,74670531,30,null,"NA","MTA_TR0800000841.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",3.96,3.91,3.53,3.54,3.47,3.38]
["TC0200002535.rn.1",3.89,3.62,1.206,"up",0.0306839798726106,0.0350066606046971,"LOC102552066","uncharacterized LOC102552066","chr2","-","mRNARGD7736191_1","Noncoding",10951564,10989848,63,null,"NA","mRNARGD7736191_1","Rat Genome Database","uncharacterized LOC102552066","chr2",100,100,{"$nulls":24},"NonCoding",3.73,3.91,4.03,3.76,3.59,3.51]
["TC0400002671.rn.1",6.38,5.71,1.591,"up",0.0307081060901101,0.0350178077883737,"LOC102552890","uncharacterized LOC102552890","chr4","-","mRNARGD7590639_1","Noncoding",62290771,62298443,30,null,"NA","mRNARGD7590639_1","Rat Genome Database","uncharacterized LOC102552890","chr4",100,100,{"$nulls":24},"NonCoding",6.28,6.48,6.37,5.69,5.71,5.72]
["TC1900000006.rn.1",7.82,6.98,1.79,"up",0.0307577760761762,0.0350563170539503,"LOC102551154","uncharacterized LOC102551154","chr19","+","mRNARGD7571439_1","Noncoding",297457,307756,30,null,"NA","mRNARGD7571439_1","Rat Genome Database","uncharacterized LOC102551154","chr19",100,100,{"$nulls":24},"NonCoding",7.45,8.53,7.48,6.88,6.95,7.11]
["TC1700002224.rn.1",9.92,8.87,2.071,"up",0.0308031824626273,0.0350919518991539,"LOC100911230","uncharacterized LOC100911230","chr17","-","mRNARGD6494436_1","Noncoding",77911413,77914411,30,null,"NA","mRNARGD6494436_1","Rat Genome Database","uncharacterized LOC100911230","chr17",100,100,{"$nulls":24},"NonCoding",9.58,10.56,9.62,8.65,8.34,9.61]
["TC0600000106.rn.1",3.59,3.86,-1.206,"down",0.030878016131426,0.035160806359811,"martu","Unannotated AceView Transcript","chr6","+","martu.aSep08","Noncoding",8137372,8149825,61,null,"NA","martu.aSep08","Ace View","Unannotated AceView Transcript","chr6",100,100,{"$nulls":24},"NonCoding",3.49,3.64,3.64,4.01,3.94,3.64]
["TC0X00000501.rn.1",3.37,3.09,1.214,"up",0.0309252631274184,0.0351941002218544,"KnowTID_00008043","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chrX","+","MTA_TR0X00007204.mm","Noncoding",60084868,60086676,30,null,"NA","MTA_TR0X00007204.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",3.55,3.37,3.2,3.03,3.03,3.22]
["TC1400000027.rn.1",16.14,15.36,1.717,"up",0.0309634624218595,0.035226033514318,null,null,"chr14","+",null,"Pseudogene",1690757,1696882,30,null,"NA","ENSRNOT00000071557","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:1685988:1692113:1 gene:ENSRNOG00000049543 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",15.82,16.79,15.82,15.13,15.34,15.62]
["TC1400000046.rn.1",16.14,15.36,1.717,"up",0.0309634624218595,0.035226033514318,null,null,"chr14","+",null,"Pseudogene",2533383,2539511,30,null,"NA","ENSRNOT00000073831","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:2532427:2538555:1 gene:ENSRNOG00000049960 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",15.82,16.79,15.82,15.13,15.34,15.62]
["TC1900000688.rn.1",3.89,3.56,1.257,"up",0.031072682470256,0.035315595864356,"NONMMUG041720","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19","+","MTA_TR0800004622.mm","Noncoding",49824957,49827003,30,null,"NA","MTA_TR0800004622.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19",100,100,{"$nulls":24},"NonCoding",3.96,3.86,3.86,3.64,3.42,3.63]
["TC1500002350.rn.1",5.36,6.55,-2.282,"down",0.0311229738186633,0.0353519373703001,"LOC102556286","uncharacterized LOC102556286","chr15","-","mRNARGD7536962_1","Noncoding",96779129,96789524,30,null,"NA","mRNARGD7536962_1","Rat Genome Database","uncharacterized LOC102556286","chr15",100,100,{"$nulls":24},"NonCoding",5.05,5.58,5.44,6.39,6.43,6.83]
["TC1100000113.rn.1",6.14,5.74,1.32,"up",0.031159666173678,0.0353774222943112,"KnowTID_00003194","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600003027.mm","Noncoding",16139785,16141868,30,null,"NA","MTA_TR1600003027.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",6.17,6.27,5.98,5.76,5.78,5.68]
["TC0400000443.rn.1",15.58,15.23,1.275,"up",0.0312507435888431,0.0354437625281923,"DUF1725.476","Unannotated AceView Transcript","chr4","+","DUF1725.476.aSep08-unspliced","Pseudogene",45954967,45958237,30,null,"NA","DUF1725.476.aSep08-unspliced","Ace View","Unannotated AceView Transcript","chr4",100,100,{"$nulls":24},"Pseudogene",15.43,15.89,15.43,15.35,15.21,15.14]
["TC0100000295.rn.1",7.84,8.48,-1.558,"down",0.0313840099699561,0.0355670431359673,"NONMMUG003326","Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR1000006123.mm","Noncoding",28391946,28393648,30,null,"NA","MTA_TR1000006123.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",7.73,8.04,7.75,8.21,8.45,8.78]
["TC1300001791.rn.1",15.23,14.09,2.204,"up",0.0314105062424909,0.0355831422941378,null,null,"chr13","-",null,"Pseudogene",82121227,82121606,30,null,"NA","ENSRNOT00000071418","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:13:87001244:87001623:-1 gene:ENSRNOG00000047442 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,{"$nulls":24},"Pseudogene",14.99,15.68,15.01,13.63,14.13,14.52]
["TC1700002225.rn.1",7.29,6.02,2.412,"up",0.0314330598902348,0.0355977460044947,"NONMMUG021828","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","-","MTA_TR0200000108.mm","Noncoding",77913356,77915030,30,null,"NA","MTA_TR0200000108.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",7.06,7.33,7.47,5.27,5.73,7.07]
["TC2000001178.rn.1",4.05,3.78,1.206,"up",0.0314943365536312,0.0356432419228046,"uc008biu.2","RNA for germline small RNA gsRNA300, complete sequence.","chr20","-","MTA_TR1700006205.mm","Noncoding",6640849,6640995,30,null,"NA","MTA_TR1700006205.mm","MTA2Rn6","RNA for germline small RNA gsRNA300, complete sequence.","chr20",100,100,{"$nulls":24},"NonCoding",4.1,4.2,3.86,3.74,3.75,3.86]
["TC0400000451.rn.1",5.44,6.91,-2.77,"down",0.0315276221393433,0.0356692929648647,"LOC102554399","uncharacterized LOC102554399","chr4","+","mRNARGD7739804_1","Noncoding",48349431,48365821,34,null,"NA","mRNARGD7739804_1","Rat Genome Database","uncharacterized LOC102554399","chr4",100,100,{"$nulls":24},"NonCoding",5.62,5.37,5.33,6.4,6.34,8]
["TC0200003416.rn.1",5.39,6.41,-2.028,"down",0.031593255499964,0.0357287524650293,"NONMMUG026291","Non-coding transcript identified by NONCODE: Antisense","chr2","-","MTA_TR0300000544.mm","Noncoding",115788169,115791285,30,null,"NA","MTA_TR0300000544.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",5.18,5.38,5.6,6.91,6.37,5.96]
["TC1400002026.rn.1",6.59,5.89,1.625,"up",0.0317740369485603,0.0358966438497295,"LOC102552730","uncharacterized LOC102552730","chr14","-","mRNARGD7695630_1","Noncoding",77554228,77555877,30,null,"NA","mRNARGD7695630_1","Rat Genome Database","uncharacterized LOC102552730","chr14",100,100,{"$nulls":24},"NonCoding",6.43,7.12,6.21,5.74,5.69,6.23]
["TC0800002313.rn.1",3.28,2.81,1.385,"up",0.0318099227387661,0.035920832600605,null,null,"chr8","-",null,"Pseudogene",43141827,43142635,30,null,"NA","ENSRNOT00000073515","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:8:43128339:43129147:-1 gene:ENSRNOG00000046550 gene_biotype:pseudogene transcript_biotype:pseudogene","chr8",100,100,{"$nulls":24},"Pseudogene",3.21,3.7,2.94,2.91,2.7,2.82]
["TC1000000391.rn.1",4.52,5.01,-1.404,"down",0.0318764007176559,0.035979393188106,"NONMMUG005822","Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1100001308.mm","Noncoding",25897692,25898360,30,null,"NA","MTA_TR1100001308.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",4.88,4.11,4.57,5.06,5.02,4.94]
["TC0400001041.rn.1",4.28,5.18,-1.866,"down",0.0318783513072442,0.035979393188106,"NONMMUG035518","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600002491.mm","Noncoding",92217491,92220358,30,null,"NA","MTA_TR0600002491.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",4.19,4.4,4.25,4.65,4.92,5.97]
["TC0300000950.rn.1",4.29,4.65,-1.283,"down",0.0318981471068642,0.0359970579739712,"NONMMUG023602","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200003983.mm","Noncoding",69495512,69496744,30,null,"NA","MTA_TR0200003983.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.06,4.4,4.42,4.53,4.54,4.89]
["TC1600001993.rn.1",4.47,5.16,-1.613,"down",0.0319518989871465,0.0360343074274961,"NONMMUG039945","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","-","MTA_TR0800000512.mm","Noncoding",80398484,80400588,30,null,"NA","MTA_TR0800000512.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",4.36,4.55,4.49,4.75,5.02,5.72]
["TC0300002543.rn.1",5.72,4.97,1.682,"up",0.0320098511270637,0.036085769231612,"NONMMUG025853","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr3","+","MTA_TR0200009543.mm","Noncoding",174319412,174320292,30,null,"NA","MTA_TR0200009543.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr3",100,100,{"$nulls":24},"NonCoding",5.54,6.24,5.38,4.72,4.77,5.43]
["TC0X00001518.rn.1",3.48,3.84,-1.283,"down",0.0320287706504855,0.0361020088417959,"KnowTID_00007869","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chrX","-","MTA_TR0X00000071.mm","Noncoding",17074884,17076949,30,null,"NA","MTA_TR0X00000071.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",3.6,3.5,3.33,4.02,3.73,3.78]
["TC0800000385.rn.1",6.54,6.02,1.434,"up",0.0321269515814901,0.0361941290564929,null,null,"chr8","+",null,"Noncoding",38093743,38094151,30,null,"NA","NONRATT053004","NONCODE","Non-coding transcript identified by NONCODE","chr8",100,100,{"$nulls":24},"NonCoding",6.51,6.52,6.58,5.85,6.06,6.16]
["TC1600000485.rn.1",3.56,4.12,-1.474,"down",0.0322120986626267,0.0362618343508838,"LOC102549910","uncharacterized LOC102549910","chr16","+","mRNARGD7507109_1","Noncoding",40660526,40683126,30,null,"NA","mRNARGD7507109_1","Rat Genome Database","uncharacterized LOC102549910","chr16",100,100,{"$nulls":24},"NonCoding",3.62,3.7,3.36,3.62,4.38,4.36]
["TC0100007789.rn.1",4.33,4.66,-1.257,"down",0.03235327775232,0.0363830379902603,"LOC100911827","uncharacterized LOC100911827","chr1","-","NR_110710","Noncoding",265071992,265080383,140,null,100911827,"NR_110710","RefSeq","Rattus norvegicus uncharacterized LOC100911827 (LOC100911827), long non-coding RNA.","chr1",100,100,null,null,"NR_110710","Rn.121630","brain",{"$nulls":19},"NonCoding",4.17,4.41,4.41,4.85,4.41,4.72]
["TC0700000275.rn.1",9.05,7.12,3.811,"up",0.0323805520624566,0.0364113522706456,null,null,"chr7","+",null,"Noncoding",14857705,14858006,30,null,"NA","NONRATT049245","NONCODE","Non-coding transcript identified by NONCODE","chr7",100,100,{"$nulls":24},"NonCoding",8.52,9.97,8.67,6.86,7.35,7.14]
["TC0400002973.rn.1",8.01,8.63,-1.537,"down",0.0324065942842805,0.0364235787440004,"LOC102553321","uncharacterized LOC102553321","chr4","-","mRNARGD7614439_1","Noncoding",87688176,87704755,30,null,"NA","mRNARGD7614439_1","Rat Genome Database","uncharacterized LOC102553321","chr4",100,100,{"$nulls":24},"NonCoding",8.32,8.01,7.69,8.59,8.74,8.56]
["TC1600001906.rn.1",7.01,5.92,2.129,"up",0.0325357114805673,0.0365361590360679,"NONMMUG040088","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","-","MTA_TR0800000882.mm","Noncoding",74006746,74009555,30,null,"NA","MTA_TR0800000882.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",6.38,6.99,7.67,5.61,5.76,6.38]
["TC1100001828.rn.1",4.34,4.65,-1.24,"down",0.0325857413869418,0.0365737653725597,"LOC102548023","uncharacterized LOC102548023","chr11","-","mRNARGD7525907_1","Noncoding",75784540,75795091,90,null,"NA","mRNARGD7525907_1","Rat Genome Database","uncharacterized LOC102548023","chr11",100,100,{"$nulls":24},"NonCoding",4.42,4.41,4.19,4.71,4.51,4.73]
["TC0500002987.rn.1",4.68,5.9,-2.329,"down",0.0325985094463801,0.0365786309873797,"NONMMUG029620","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400009915.mm","Noncoding",94434032,94435467,30,null,"NA","MTA_TR0400009915.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",4.57,4.89,4.59,4.99,5.7,7.01]
["TC1900001702.rn.1",8.53,7.23,2.462,"up",0.0327165975891944,0.0366800062425388,null,null,"chr19","-",null,"Noncoding",57983500,57984202,30,null,"NA","NONRATT028639","NONCODE","Non-coding transcript identified by NONCODE","chr19",100,100,{"$nulls":24},"NonCoding",8.16,9.1,8.32,6.94,6.94,7.81]
["TC0300001225.rn.1",4.29,5,-1.636,"down",0.0327292953089594,0.0366881751782335,"NONMMUG023907","Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200004785.mm","Noncoding",85705406,85707352,30,null,"NA","MTA_TR0200004785.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",4.13,4.25,4.5,4.65,4.77,5.59]
["TC1800001466.rn.1",3.59,3.27,1.248,"up",0.0328974349350681,0.0368209627742956,"NONMMUG019974","Non-coding transcript identified by NONCODE: Linc","chr18","-","MTA_TR1800004156.mm","Noncoding",51510475,51511170,30,null,"NA","MTA_TR1800004156.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",3.49,3.67,3.6,3.2,3.13,3.49]
["TC1600000927.rn.1",4.99,6.18,-2.282,"down",0.0329414812187512,0.0368601715737162,"NONMMUG039986","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","+","MTA_TR0800005778.mm","Noncoding",77531770,77533557,30,null,"NA","MTA_TR0800005778.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",5.08,4.75,5.13,5.68,5.78,7.07]
["TC1000003972.rn.1",5.26,4.63,1.548,"up",0.0329936056116458,0.0368953214291167,"NONMMUG007866","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1100014949.mm","Noncoding",95095156,95098273,30,null,"NA","MTA_TR1100014949.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",4.79,5.24,5.74,4.4,4.74,4.74]
["TC0800002262.rn.1",6.13,5.57,1.474,"up",0.0330793886547045,0.0369745872415463,"NONMMUG042496","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","-","MTA_TR0900006599.mm","Noncoding",39817198,39818760,22,null,"NA","MTA_TR0900006599.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",6.01,6.37,6,5.45,5.56,5.71]
["TC0300001983.rn.1",5.04,4.58,1.376,"up",0.0331791794057981,0.0370432242083758,null,null,"chr3","+",null,"Pseudogene",146263250,146263646,30,null,"NA","ENSRNOT00000013677","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:152626057:152626453:1 gene:ENSRNOG00000010304 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",4.95,5.25,4.93,4.4,4.51,4.82]
["TC0100000385.rn.1",5.47,3.82,3.138,"up",0.0332691032473431,0.0371257379094365,"LOC102555549","uncharacterized LOC102555549","chr1","+","mRNARGD7514632_1","Noncoding",37379580,37381441,30,null,"NA","mRNARGD7514632_1","Rat Genome Database","uncharacterized LOC102555549","chr1",100,100,{"$nulls":24},"NonCoding",5.16,6.26,4.98,3.88,3.86,3.72]
["TC1500001791.rn.1",3.93,3.54,1.31,"up",0.033292511492552,0.0371387244501105,"ENSMUSG00000091132","predicted gene 17109, ribosomal protein L27 (Rpl27) pseudogene","chr15","-","MTA_TR1400006700.mm","Pseudogene",38382672,38383031,30,null,"NA","MTA_TR1400006700.mm","MTA2Rn6","predicted gene 17109, ribosomal protein L27 (Rpl27) pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",4.13,3.91,3.74,3.62,3.31,3.69]
["TC0200002848.rn.1",5.29,4.44,1.803,"up",0.0332997864647851,0.0371396847948496,"NONMMUG011889","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR1300007701.mm","Noncoding",39110670,39114618,30,null,"NA","MTA_TR1300007701.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",4.87,5.2,5.81,4.3,4.18,4.83]
["TC0200001398.rn.1",4.09,4.38,-1.223,"down",0.0334863335193946,0.0373070228043486,"LOC365821","similar to Voltage-dependent anion-selective channel protein 1 (VDAC-1) (mVDAC1) (mVDAC5) (Outer mitochondrial membrane protein porin 1) (Plasmalemmal porin)","chr2","+","mRNARGD6674179_1","Pseudogene",173431314,173436381,30,null,"NA","mRNARGD6674179_1","Rat Genome Database","similar to Voltage-dependent anion-selective channel protein 1 (VDAC-1) (mVDAC1) (mVDAC5) (Outer mitochondrial membrane protein porin 1) (Plasmalemmal porin)","chr2",100,100,{"$nulls":24},"Pseudogene",4.21,4.25,3.82,4.44,4.37,4.34]
["TC1700001334.rn.1",4.39,4.04,1.275,"up",0.0335214069575224,0.0373365196370301,"NONMMUG011049","Non-coding transcript identified by NONCODE: Antisense","chr17","-","MTA_TR1300001810.mm","Noncoding",10143581,10145740,30,null,"NA","MTA_TR1300001810.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr17",100,100,{"$nulls":24},"NonCoding",4.5,4.4,4.28,3.97,4.11,4.03]
["TC1100000818.rn.1",3.68,3.22,1.376,"up",0.0336299715767996,0.0374286414826106,"NONMMUG016176","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr11","+","MTA_TR1600005014.mm","Noncoding",74421080,74422090,30,null,"NA","MTA_TR1600005014.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr11",100,100,{"$nulls":24},"NonCoding",3.37,4.13,3.53,3.23,3.22,3.22]
["TC1200000107.rn.1",4.28,3.94,1.266,"up",0.0336676065577919,0.0374585277342857,"LOC102551137","uncharacterized LOC102551137","chr12","+","mRNARGD7652111_1","Noncoding",6613097,6614977,30,null,"NA","mRNARGD7652111_1","Rat Genome Database","uncharacterized LOC102551137","chr12",100,100,{"$nulls":24},"NonCoding",4.25,4.49,4.11,4.14,3.71,3.97]
["TC0200002211.rn.1",3.69,3.37,1.248,"up",0.0337031501663002,0.0374836687072668,"LOC102552237","uncharacterized LOC102552237","chr2","+","mRNARGD7502022_1","Noncoding",236143497,236147366,30,null,"NA","mRNARGD7502022_1","Rat Genome Database","uncharacterized LOC102552237","chr2",100,100,{"$nulls":24},"NonCoding",3.95,3.49,3.64,3.28,3.39,3.44]
["TC0800001805.rn.1",7.13,8.57,-2.713,"down",0.0337956698033349,0.0375721331298388,"LOC102554150","uncharacterized LOC102554150","chr8","+","mRNARGD7572454_1","Noncoding",131177015,131181820,42,null,"NA","mRNARGD7572454_1","Rat Genome Database","uncharacterized LOC102554150","chr8",100,100,{"$nulls":24},"NonCoding",7.32,7.2,6.88,8.4,8.58,8.73]
["TC0100004062.rn.1",4.13,3.86,1.206,"up",0.0338669594443445,0.0376369363769246,"LOC102546491","uncharacterized LOC102546491","chr1","-","mRNARGD7653585_1","Noncoding",12430987,12482686,70,null,"NA","mRNARGD7653585_1","Rat Genome Database","uncharacterized LOC102546491","chr1",100,100,{"$nulls":24},"NonCoding",4.31,4.05,4.04,3.71,3.86,4.01]
["TC0300001282.rn.1",16.4,15.79,1.526,"up",0.0338850497316762,0.0376474063888038,null,null,"chr3","+",null,"Pseudogene",93158396,93161261,30,null,"NA","ENSRNOT00000049830","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:3:99801175:99804040:1 gene:ENSRNOG00000034030 gene_biotype:pseudogene transcript_biotype:pseudogene","chr3",100,100,{"$nulls":24},"Pseudogene",16.21,16.9,16.08,15.81,15.78,15.77]
["TC0600001143.rn.1",6.83,6.05,1.717,"up",0.0339862797932199,0.0377381530483267,"NONMMUG009501","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200002188.mm","Noncoding",107139466,107140920,30,null,"NA","MTA_TR1200002188.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",6.82,6.84,6.83,5.48,5.84,6.82]
["TC0300004257.rn.1",4.59,5.13,-1.454,"down",0.0340717836357245,0.0378089236955851,"LOC102547302","uncharacterized LOC102547302","chr3","-","mRNARGD7645316_1","Noncoding",129483605,129583473,76,null,"NA","mRNARGD7645316_1","Rat Genome Database","uncharacterized LOC102547302","chr3",100,100,{"$nulls":24},"NonCoding",4.66,4.66,4.46,4.71,5.23,5.46]
["TC0900002307.rn.1",4.34,4.07,1.206,"up",0.0341134478733325,0.0378406579187522,"NONMMUG001099","Non-coding transcript identified by NONCODE: Linc","chr9","-","MTA_TR0100008470.mm","Noncoding",84610154,84625005,70,null,"NA","MTA_TR0100008470.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr9",100,100,{"$nulls":24},"NonCoding",4.27,4.5,4.26,4.26,3.92,4.03]
["TC0100000389.rn.1",5.08,4.61,1.385,"up",0.0341159891086501,0.0378410603924629,"KnowTID_00002128","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR1300006395.mm","Noncoding",37780424,37781482,30,null,"NA","MTA_TR1300006395.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.37,4.83,5.04,4.26,4.73,4.83]
["TC0300002778.rn.1",3.44,3.74,-1.231,"down",0.0341999133137243,0.0379002675708265,"LOC102549182","uncharacterized LOC102549182","chr3","-","mRNARGD7499237_1","Noncoding",6872328,6879552,30,null,"NA","mRNARGD7499237_1","Rat Genome Database","uncharacterized LOC102549182","chr3",100,100,{"$nulls":24},"NonCoding",3.46,3.55,3.32,3.88,3.69,3.64]
["TC0700000534.rn.1",4.52,4.87,-1.275,"down",0.0342272758707792,0.0379209139072202,"KnowTID_00000781","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","+","MTA_TR1000003691.mm","Noncoding",35728773,35729169,30,null,"NA","MTA_TR1000003691.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",4.61,4.48,4.46,4.93,5.05,4.62]
["TC1500000154.rn.1",5.17,4.82,1.275,"up",0.0342487919104978,0.0379326552076803,"Fhit","fragile histidine triad gene (Fhit), mRNA. Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr15","+","TCONS_00040262","Noncoding",16089764,16093331,30,null,"NA","TCONS_00040262","Chalmel","fragile histidine triad gene (Fhit), mRNA. Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr15",100,100,{"$nulls":24},"NonCoding",5.18,5.17,5.17,4.86,4.66,4.95]
["TC0X00000966.rn.1",9.24,9.67,-1.347,"down",0.0342690237187074,0.0379526433546488,null,null,"chrX","+",null,"Pseudogene",113121664,113122653,30,null,"NA","ENSRNOT00000044122","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:111573870:111574859:1 gene:ENSRNOG00000031239 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",9.32,9.4,9.01,9.51,9.77,9.73]
["TC0800000004.rn.1",3.33,4.1,-1.705,"down",0.0343630579123166,0.0380301146148606,"NONMMUG042023","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","+","MTA_TR0900000066.mm","Noncoding",672125,680191,30,null,"NA","MTA_TR0900000066.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",3.42,3.11,3.47,3.97,3.58,4.75]
["TC0700002564.rn.1",4.44,4.01,1.347,"up",0.0343657959719697,0.0380307219104979,"LOC102550725","uncharacterized LOC102550725","chr7","-","mRNARGD7552032_1","Noncoding",37810311,37812146,30,null,"NA","mRNARGD7552032_1","Rat Genome Database","uncharacterized LOC102550725","chr7",100,100,{"$nulls":24},"NonCoding",4.35,4.64,4.34,4.16,4.13,3.74]
["TC1200001707.rn.1",4.74,4.11,1.548,"up",0.0344221643604183,0.0380799044703907,"NONMMUG033568","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","-","MTA_TR0500004420.mm","Noncoding",45072143,45074042,30,null,"NA","MTA_TR0500004420.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",4.72,4.52,4.99,4.35,3.96,4.03]
["TC1500001190.rn.1",7.81,6.4,2.657,"up",0.0344505411497711,0.0381026582396965,null,null,"chr15","+",null,"Pseudogene",107486555,107487040,30,null,"NA","ENSRNOT00000074277","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:110878092:110878577:1 gene:ENSRNOG00000046236 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",7.58,8.53,7.33,6.25,6.78,6.16]
["TC0600001079.rn.1",4.59,4.89,-1.231,"down",0.0345220380337417,0.0381647249210289,"uc011ymr.2","non-coding RNA, oocyte_clustered_small_RNA7899, complete sequence.","chr6","+","MTA_TR1200001490.mm","Noncoding",103520057,103520133,30,null,"NA","MTA_TR1200001490.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA7899, complete sequence.","chr6",100,100,{"$nulls":24},"NonCoding",4.49,4.61,4.68,5.08,4.92,4.68]
["TC0700001567.rn.1",3.57,3.87,-1.231,"down",0.034537918989069,0.0381749930490658,"NONMMUG015118","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr7","+","MTA_TR1500002423.mm","Noncoding",125512018,125515642,17,null,"NA","MTA_TR1500002423.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr7",100,100,{"$nulls":24},"NonCoding",3.78,3.54,3.39,4,3.78,3.82]
["TC1500002133.rn.1",4.74,4.33,1.329,"up",0.034616212506325,0.0382389435520715,"NONMMUG013528","Non-coding transcript identified by NONCODE: Antisense","chr15","-","MTA_TR1400007621.mm","Noncoding",61102211,61103262,20,null,"NA","MTA_TR1400007621.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr15",100,100,{"$nulls":24},"NonCoding",4.57,4.88,4.78,4.4,4.31,4.28]
["TC0300001529.rn.1",4.41,4.02,1.31,"up",0.0346407117189466,0.03824955564043,"LOC102550896","uncharacterized LOC102550896","chr3","+","mRNARGD7668833_1","Noncoding",112114139,112114445,30,null,"NA","mRNARGD7668833_1","Rat Genome Database","uncharacterized LOC102550896","chr3",100,100,{"$nulls":24},"NonCoding",4.4,4.67,4.17,4.07,3.85,4.13]
["TC0200003328.rn.1",3.95,3.54,1.329,"up",0.0346920589588264,0.0382868968344202,"NONMMUG026126","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2","-","MTA_TR0300005548.mm","Noncoding",102328752,103243009,24,null,"NA","MTA_TR0300005548.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2",100,100,{"$nulls":24},"NonCoding",4.13,4.08,3.65,3.4,3.6,3.63]
["TC1600001485.rn.1",3.53,3.81,-1.214,"down",0.034748161067118,0.0383390692261755,"LOC690318","similar to Glycine cleavage system H protein, mitochondrial precursor","chr16","-","ENSRNOT00000073437","Pseudogene",26323113,26328485,30,null,686313,"ENSRNOT00000073437","ENSEMBL","ensembl:known chromosome:Rnor_5.0:16:26208066:26208580:-1 gene:ENSRNOG00000047432 gene_biotype:pseudogene transcript_biotype:pseudogene","chr16",100,100,null,null,"ENSRNOT00000073437","Rn.231907","adrenal gland",{"$nulls":19},"Pseudogene",3.62,3.54,3.42,3.86,3.94,3.62]
["TC0200003880.rn.1",4.72,5.55,-1.778,"down",0.0348520400299716,0.0384170815001356,"NONMMUG026804","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300001623.mm","Noncoding",172607330,172611059,30,null,"NA","MTA_TR0300001623.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",4.74,4.67,4.75,5,5.35,6.31]
["TC0X00000978.rn.1",4.32,4.75,-1.347,"down",0.03487960281789,0.0384343460385871,"NONMMUG045989","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","+","MTA_TR0X00003929.mm","Noncoding",114841899,114844178,30,null,"NA","MTA_TR0X00003929.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",4.44,4.34,4.17,4.58,4.56,5.1]
["TC0200001271.rn.1",3.76,4.37,-1.526,"down",0.0349400996460066,0.0384848437607495,"NONMMUG026757","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300001519.mm","Noncoding",155734551,155738781,30,null,"NA","MTA_TR0300001519.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",3.96,3.66,3.65,3.96,4.3,4.85]
["TC0800001767.rn.1",4.21,3.92,1.223,"up",0.0349984794135616,0.0385369286189768,"NONMMUG044232","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","+","MTA_TR0900005230.mm","Noncoding",129255419,129255844,30,null,"NA","MTA_TR0900005230.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",4.16,4.29,4.19,3.85,3.75,4.16]
["TC0500004014.rn.1",5.18,4.76,1.338,"up",0.0350312798147127,0.0385559375062646,"LOC100910117","zinc finger protein 765-like","chr5","-","mRNARGD6500162_1","Pseudogene",163700749,163713567,48,null,"NA","mRNARGD6500162_1","Rat Genome Database","zinc finger protein 765-like","chr5",100,100,{"$nulls":24},"Pseudogene",4.94,5.42,5.19,4.79,4.89,4.61]
["TC0100005203.rn.1",4.6,4.27,1.257,"up",0.0350617038173466,0.0385796450884353,"NONMMUG037727","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR0700010211.mm","Noncoding",90314589,90321429,30,null,"NA","MTA_TR0700010211.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",4.76,4.71,4.33,4.36,4.23,4.21]
["TC0600000482.rn.1",10.81,11.24,-1.347,"down",0.0351218959665672,0.0386189678969008,null,null,"chr6","+",null,"Pseudogene",42793039,42793809,30,null,"NA","ENSRNOT00000038391","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:52505670:52506440:1 gene:ENSRNOG00000024118 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",10.92,10.89,10.61,10.93,11.24,11.56]
["TC0600000645.rn.1",4.74,5.09,-1.275,"down",0.0351316961223992,0.0386248540089998,"NONMMUG008843","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200000999.mm","Noncoding",57893675,57894768,30,null,"NA","MTA_TR1200000999.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",4.75,4.83,4.64,5.06,4.93,5.29]
["TC1100000046.rn.1",4.18,4.55,-1.292,"down",0.0352081416575337,0.0386966547758948,"KnowTID_00003174","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11","+","MTA_TR1600002909.mm","Noncoding",9227738,9230399,30,null,"NA","MTA_TR1600002909.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",4.19,4.27,4.07,4.49,4.27,4.88]
["TC1400001146.rn.1",6.93,6.51,1.338,"up",0.0352117461314643,0.0386981679140622,"NONMMUG005526","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR1100000843.mm","Noncoding",108116673,108118132,30,null,"NA","MTA_TR1100000843.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",6.79,6.81,7.18,6.31,6.38,6.83]
["TC0200002593.rn.1",5.52,3.65,3.655,"up",0.0353719259210475,0.0388201747014478,"LOC102551391","uncharacterized LOC102551391","chr2","-","mRNARGD7500599_1","Noncoding",21015359,21016083,30,null,"NA","mRNARGD7500599_1","Rat Genome Database","uncharacterized LOC102551391","chr2",100,100,{"$nulls":24},"NonCoding",4.94,6.39,5.23,3.64,3.46,3.86]
["TC0900001688.rn.1",5.27,4.84,1.347,"up",0.0354170419467987,0.0388647779948099,"XLOC_049774","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr9","-","TCONS_00117497","Noncoding",25252530,25253006,30,null,"NA","TCONS_00117497","Chalmel","Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr9",100,100,{"$nulls":24},"NonCoding",5.26,5.43,5.11,4.79,4.84,4.9]
["TC0X00001283.rn.1",5.41,4.12,2.445,"up",0.0354726811220136,0.0389080183948361,null,null,"chrX","+",null,"Pseudogene",155777476,155778107,30,null,"NA","ENSRNOT00000075023","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:151496800:151497431:1 gene:ENSRNOG00000047755 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",4.99,5.98,5.26,3.94,3.94,4.48]
["TC1000002509.rn.1",9.2,8.35,1.803,"up",0.0354743650531008,0.0389080183948361,"LOC102546404","uncharacterized LOC102546404","chr10","-","mRNARGD7516407_1","Noncoding",17950760,17959315,30,null,"NA","mRNARGD7516407_1","Rat Genome Database","uncharacterized LOC102546404","chr10",100,100,{"$nulls":24},"NonCoding",8.85,9.62,9.13,8.31,8.6,8.13]
["TC0600000386.rn.1",5.47,5.19,1.214,"up",0.0355211076466114,0.0389469898964399,"LOC313946","similar to 60S ribosomal protein L13","chr6","+","LOC313946.aSep08-unspliced","Pseudogene",32566290,32566832,30,null,"NA","LOC313946.aSep08-unspliced","Ace View","similar to 60S ribosomal protein L13","chr6",100,100,{"$nulls":24},"Pseudogene",5.63,5.33,5.44,5.33,5.24,5]
["TC0300002865.rn.1",5.51,5.9,-1.31,"down",0.0355382842859436,0.038958446064062,"NONMMUG022577","Non-coding transcript identified by NONCODE: Antisense","chr3","-","MTA_TR0200011767.mm","Noncoding",11248934,11253817,38,null,"NA","MTA_TR0200011767.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",5.47,5.45,5.61,5.61,5.84,6.25]
["TC0300004910.rn.1",5.17,4.11,2.085,"up",0.0355957396840946,0.0389869857536196,"LOC102552989","uncharacterized LOC102552989","chr3","-","mRNARGD7517642_1","Noncoding",169221105,169223993,30,null,"NA","mRNARGD7517642_1","Rat Genome Database","uncharacterized LOC102552989","chr3",100,100,{"$nulls":24},"NonCoding",4.99,5.74,4.79,3.93,4.38,4.02]
["TC1400000667.rn.1",7.48,9.99,-5.696,"down",0.0356065545482278,0.0389955484764879,"NONMMUG032431","Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR0500008464.mm","Noncoding",65555515,65556816,30,null,"NA","MTA_TR0500008464.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",7.47,7.18,7.79,9.64,9.75,10.57]
["TC1400000620.rn.1",3.83,3.39,1.357,"up",0.0356376127119297,0.0390180871309045,"KnowTID_00005851","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR0500008550.mm","Noncoding",59790721,59791121,30,null,"NA","MTA_TR0500008550.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",3.69,4.18,3.62,3.47,3.23,3.48]
["TC0200000643.rn.1",4.57,5.53,-1.945,"down",0.035718340659635,0.0390892267119334,"NONMMUG014142","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1500000442.mm","Noncoding",73696715,73697917,30,null,"NA","MTA_TR1500000442.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.61,4.68,4.41,5.55,4.82,6.21]
["TC1200001318.rn.1",4.38,4.03,1.275,"up",0.0357656237617797,0.0391237185368939,"NONMMUG034055","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr12","-","MTA_TR0500005648.mm","Noncoding",23043883,23052010,15,null,"NA","MTA_TR0500005648.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr12",100,100,{"$nulls":24},"NonCoding",4.5,4.55,4.1,4.05,4.05,3.98]
["TC0100006721.rn.1",5.24,5.64,-1.32,"down",0.0357906601542564,0.0391344696621406,"NONMMUG039383","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR0700014872.mm","Noncoding",199308877,199310812,30,null,"NA","MTA_TR0700014872.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",5.28,4.96,5.49,5.47,5.88,5.56]
["TC1600000321.rn.1",4.38,4.01,1.292,"up",0.0358417922027078,0.0391774334478503,"NONMMUG040809","Non-coding transcript identified by NONCODE: Antisense","chr16","+","MTA_TR0800007289.mm","Noncoding",21353081,21354709,30,null,"NA","MTA_TR0800007289.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr16",100,100,{"$nulls":24},"NonCoding",4.57,4.22,4.35,3.88,4.22,3.94]
["TC0200000500.rn.1",3.22,2.92,1.231,"up",0.0358786616063339,0.0392053991799475,"NONMMUG013972","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR1500000105.mm","Noncoding",55671629,55673607,30,null,"NA","MTA_TR1500000105.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",3.1,3.46,3.1,2.85,2.99,2.92]
["TC1800000596.rn.1",5.83,7.26,-2.694,"down",0.0359693523332315,0.0392822594857641,"NONMMUG020029","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18","+","MTA_TR1800001764.mm","Noncoding",54307259,54317094,30,null,"NA","MTA_TR1800001764.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18",100,100,{"$nulls":24},"NonCoding",5.6,5.75,6.14,6.35,6.77,8.67]
["TC1800001318.rn.1",6.46,5.55,1.879,"up",0.0360036504000782,0.0393050875927527,"LOC102547564","uncharacterized LOC102547564","chr18","-","mRNARGD7662504_1","Noncoding",31765126,31767071,30,null,"NA","mRNARGD7662504_1","Rat Genome Database","uncharacterized LOC102547564","chr18",100,100,{"$nulls":24},"NonCoding",6.45,6.47,6.47,4.85,5.44,6.37]
["TC0100002631.rn.1",15.74,16.41,-1.591,"down",0.0360894398636368,0.0393603482039834,"LOC102547029","cAMP-dependent protein kinase catalytic subunit beta-like","chr1","+","mRNARGD7608716_1","Pseudogene",198799056,198802794,60,null,"NA","mRNARGD7608716_1","Rat Genome Database","cAMP-dependent protein kinase catalytic subunit beta-like","chr1",100,100,{"$nulls":24},"Pseudogene",15.73,15.79,15.69,16.35,16.46,16.41]
["TC0200001410.rn.1",3.57,3.91,-1.266,"down",0.0361217844380222,0.0393843533437662,"NONMMUG026888","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300001725.mm","Noncoding",174711212,174712909,30,null,"NA","MTA_TR0300001725.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",3.48,3.59,3.65,3.85,3.8,4.09]
["TC0200002072.rn.1",5.4,6.58,-2.266,"down",0.0361802779129052,0.0394240727968845,"KnowTID_00004851","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR0300004130.mm","Noncoding",221703902,221706548,30,null,"NA","MTA_TR0300004130.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",5.57,5.27,5.37,6.01,6.25,7.47]
["TC1800000084.rn.1",7.51,8.75,-2.362,"down",0.0361977273671158,0.0394331031491047,"NCBI_Gene:100861622","PREDICTED:  uncharacterized LOC100861622 (LOC100861622), miscRNA.","chr18","+","MTA_TR1800000351.mm","Noncoding",8110119,8147573,30,null,"NA","MTA_TR1800000351.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861622 (LOC100861622), miscRNA.","chr18",100,100,{"$nulls":24},"NonCoding",7.48,7.47,7.58,9.25,8.77,8.22]
["TC0100001727.rn.1",3.45,3.05,1.32,"up",0.036221999833031,0.0394515241770382,"NONMMUG038307","Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR0700003828.mm","Noncoding",130640910,130648790,50,null,"NA","MTA_TR0700003828.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",3.35,3.78,3.21,3,3.01,3.15]
["TC0100000786.rn.1",11.29,11.92,-1.548,"down",0.0362293506496846,0.0394570564348383,"LOC689803","similar to tubulin alpha 1","chr1","+","mRNARGD6610387_1","Pseudogene",69265808,69267296,30,null,"NA","mRNARGD6610387_1","Rat Genome Database","similar to tubulin alpha 1","chr1",100,100,{"$nulls":24},"Pseudogene",11.34,10.89,11.65,11.9,12.2,11.67]
["TC0600002221.rn.1",3.65,3.32,1.257,"up",0.0363081526212803,0.0395181027057807,"NONMMUG008623","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr6","-","MTA_TR1200004261.mm","Noncoding",44195712,44197283,30,null,"NA","MTA_TR1200004261.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr6",100,100,{"$nulls":24},"NonCoding",3.46,3.88,3.62,3.27,3.25,3.44]
["TC0300003180.rn.1",3.25,2.92,1.257,"up",0.0363243774464595,0.0395332849208977,"LOC102551550","uncharacterized LOC102551550","chr3","-","mRNARGD7602326_1","Noncoding",46779000,46782273,30,null,"NA","mRNARGD7602326_1","Rat Genome Database","uncharacterized LOC102551550","chr3",100,100,{"$nulls":24},"NonCoding",3.14,3.44,3.16,2.98,2.71,3.06]
["TC0100000433.rn.1",4.33,3.8,1.444,"up",0.0364061575817871,0.0396049200496758,"LOC102546606","uncharacterized LOC102546606","chr1","+","mRNARGD7511241_1","Noncoding",43011771,43015158,30,null,"NA","mRNARGD7511241_1","Rat Genome Database","uncharacterized LOC102546606","chr1",100,100,{"$nulls":24},"NonCoding",4.13,4.83,4.03,3.86,3.58,3.97]
["TC0100001372.rn.1",4.61,3.47,2.204,"up",0.0365141725758295,0.0397075054347524,null,null,"chr1","+",null,"Pseudogene",96241972,96242731,30,null,"NA","ENSRNOT00000075146","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:97330546:97331305:1 gene:ENSRNOG00000046906 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",4.21,5.31,4.31,3.4,3.47,3.54]
["TC0500002722.rn.1",4.53,4.23,1.231,"up",0.0365634528660551,0.0397486538416824,"LOC678911","similar to 40S ribosomal protein S6","chr5","-","mRNARGD6740844_1","Pseudogene",65168187,65169015,30,null,"NA","mRNARGD6740844_1","Rat Genome Database","similar to 40S ribosomal protein S6","chr5",100,100,{"$nulls":24},"Pseudogene",4.67,4.46,4.46,4.06,4.22,4.42]
["TC0100006824.rn.1",3.76,3.26,1.414,"up",0.0366306235701165,0.0397967704069356,"MGI:5011699","PREDICTED:  predicted gene, 19514 (Gm19514), miscRNA.","chr1","-","MTA_TR0700015254.mm","Noncoding",206153543,206158056,30,null,"NA","MTA_TR0700015254.mm","MTA2Rn6","PREDICTED:  predicted gene, 19514 (Gm19514), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",3.73,3.88,3.68,3.25,3.4,3.14]
["TC1600000443.rn.1",4.59,5.31,-1.647,"down",0.036663935607198,0.0398210909873436,"NONMMUG040665","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","+","MTA_TR0800007007.mm","Noncoding",34899767,34907490,30,null,"NA","MTA_TR0800007007.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",4.31,4.63,4.84,5.1,4.84,6]
["TC1700000067.rn.1",4.21,3.83,1.301,"up",0.0366644712020939,0.0398210909873436,"KnowTID_00002075","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17","+","MTA_TR1300005938.mm","Noncoding",5116324,5142920,49,null,"NA","MTA_TR1300005938.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",3.98,4.08,4.57,3.97,3.78,3.73]
["TC0100004550.rn.1",6.22,3.41,7.013,"up",0.0367044627816384,0.0398445958617573,null,null,"chr1","-",null,"Noncoding",55674160,55674614,30,null,"NA","NONRATT004333","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",5.41,7.6,5.65,3.36,3.19,3.67]
["TC0400002233.rn.1",4.44,4.06,1.301,"up",0.0368073527529986,0.0399244537687233,"LOC102555949","uncharacterized LOC102555949","chr4","-","mRNARGD7740589_1","Noncoding",10520233,10582740,40,null,"NA","mRNARGD7740589_1","Rat Genome Database","uncharacterized LOC102555949","chr4",100,100,{"$nulls":24},"NonCoding",4.68,4.47,4.16,3.98,4.02,4.17]
["TC0600001306.rn.1",10.07,9.45,1.537,"up",0.0369096818012152,0.0400073681872525,null,null,"chr6","+",null,"Pseudogene",119627238,119627548,30,null,"NA","ENSRNOT00000073939","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:128846575:128846885:1 gene:ENSRNOG00000049801 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",10.21,10.43,9.58,9.27,9.27,9.82]
["TC1900000053.rn.1",4.81,4.4,1.329,"up",0.0369551265803337,0.0400366411267916,"NONMMUG041399","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr19","+","MTA_TR0800008574.mm","Noncoding",5445921,5446956,30,null,"NA","MTA_TR0800008574.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr19",100,100,{"$nulls":24},"NonCoding",4.75,5.04,4.63,4.65,4.1,4.46]
["TC0500003408.rn.1",5.76,6.14,-1.301,"down",0.0370201754449809,0.0400821159096711,"NONMMUG030326","Non-coding transcript identified by NONCODE: Antisense","chr5","-","MTA_TR0400011196.mm","Noncoding",135142100,135146144,30,null,"NA","MTA_TR0400011196.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",5.75,5.6,5.94,6.04,5.94,6.44]
["TC0200000409.rn.1",3.38,3.06,1.248,"up",0.0371077292289876,0.0401468836844011,"NONMMUG012001","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1300003537.mm","Noncoding",45159443,45160790,30,null,"NA","MTA_TR1300003537.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",3.44,3.51,3.18,3.21,2.94,3.04]
["TC0200000451.rn.1",3.87,3.6,1.206,"up",0.0371343168929646,0.0401706450833035,"LOC102553471","uncharacterized LOC102553471","chr2","+","mRNARGD7599218_1","Noncoding",49798484,49801973,30,null,"NA","mRNARGD7599218_1","Rat Genome Database","uncharacterized LOC102553471","chr2",100,100,{"$nulls":24},"NonCoding",4,3.71,3.89,3.4,3.68,3.71]
["TC0500003719.rn.1",7.13,6.54,1.505,"up",0.0371433696858905,0.0401779360367149,"NONMMUG030815","Non-coding transcript identified by NONCODE: Antisense","chr5","-","MTA_TR0400012467.mm","Noncoding",149060943,149067216,30,null,"NA","MTA_TR0400012467.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",7.08,7.38,6.92,6.79,6.12,6.71]
["TC1300000583.rn.1",6.49,5.7,1.729,"up",0.037238753876241,0.0402585507582887,"NONMMUG002178","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","+","MTA_TR0100004700.mm","Noncoding",77057563,77058594,30,null,"NA","MTA_TR0100004700.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",6.39,6.66,6.43,5.73,5.12,6.26]
["TC0400000190.rn.1",4.67,5.26,-1.505,"down",0.0372764065255917,0.0402867204477107,"NONMMUG031830","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0500007120.mm","Noncoding",13434641,13437491,30,null,"NA","MTA_TR0500007120.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",4.32,4.65,5.03,4.97,5.19,5.62]
["TC1300001386.rn.1",4.96,4.44,1.434,"up",0.0373020272417495,0.0402968603990317,"NONMMUG001738","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr13","-","MTA_TR0100009671.mm","Noncoding",48500901,48501823,30,null,"NA","MTA_TR0100009671.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr13",100,100,{"$nulls":24},"NonCoding",4.81,5.36,4.72,4.42,4.27,4.63]
["TC0800003145.rn.1",3.96,3.63,1.257,"up",0.0373101626738658,0.0402973665290743,"LOC102552777","uncharacterized LOC102552777","chr8","-","mRNARGD7608027_1","Noncoding",102289932,102303007,40,null,"NA","mRNARGD7608027_1","Rat Genome Database","uncharacterized LOC102552777","chr8",100,100,{"$nulls":24},"NonCoding",4.01,3.87,4.01,3.55,3.88,3.47]
["TC1800000745.rn.1",6.3,5.29,2.014,"up",0.0373664133228608,0.0403363140586263,"NONMMUG020202","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18","+","MTA_TR1800002162.mm","Noncoding",63772859,63774278,30,null,"NA","MTA_TR1800002162.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18",100,100,{"$nulls":24},"NonCoding",5.58,6.19,7.13,5.15,5.19,5.52]
["TC0900000410.rn.1",4.29,3.97,1.248,"up",0.0374925182977037,0.0404500560983831,"LOC102554472","uncharacterized LOC102554472","chr9","+","mRNARGD7707305_1","Noncoding",35115196,35150156,40,null,"NA","mRNARGD7707305_1","Rat Genome Database","uncharacterized LOC102554472","chr9",100,100,{"$nulls":24},"NonCoding",4.45,4.29,4.14,3.83,4.14,3.95]
["TC1400000505.rn.1",5.32,4.84,1.395,"up",0.0375461210449952,0.0404975888651109,"NONMMUG032639","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500008814.mm","Noncoding",43299898,43302352,30,null,"NA","MTA_TR0500008814.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",5.23,5.05,5.69,4.68,4.65,5.18]
["TC0100001752.rn.1",3.44,3.11,1.257,"up",0.0375575927205812,0.0405057495693691,"NONMMUG038340","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr1","+","MTA_TR0700003877.mm","Noncoding",133559780,133561555,30,null,"NA","MTA_TR0700003877.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr1",100,100,{"$nulls":24},"NonCoding",3.23,3.5,3.59,3.18,2.92,3.23]
["TC1400000680.rn.1",5.57,7.47,-3.732,"down",0.0377967319611602,0.0406820144307153,"NONMMUG032413","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500008447.mm","Noncoding",66172184,66172910,30,null,"NA","MTA_TR0500008447.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",6.23,4.97,5.51,6.73,6.93,8.75]
["TC1500001709.rn.1",7.45,6.85,1.516,"up",0.0378732249796297,0.0407517214520037,"LOC102552219","uncharacterized LOC102552219","chr15","-","mRNARGD7565225_1","Noncoding",34245375,34248572,70,null,"NA","mRNARGD7565225_1","Rat Genome Database","uncharacterized LOC102552219","chr15",100,100,{"$nulls":24},"NonCoding",7.27,7.78,7.31,6.81,6.78,6.97]
["TC0900000363.rn.1",6.17,5.62,1.464,"up",0.0380848612435323,0.040928738224536,null,null,"chr9","+",null,"Pseudogene",29152379,29156355,30,null,"NA","ENSRNOT00000060585","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:27991420:27995364:1 gene:ENSRNOG00000039525 gene_biotype:pseudogene transcript_biotype:pseudogene","chr9",100,100,{"$nulls":24},"Pseudogene",6.06,6.26,6.18,5.21,5.77,5.88]
["TC1100001623.rn.1",4.74,5.08,-1.266,"down",0.0381696571005382,0.0409894357995456,"NONMMUG016501","Non-coding transcript identified by NONCODE: Linc","chr11","-","MTA_TR1600002296.mm","Noncoding",62765136,62770301,30,null,"NA","MTA_TR1600002296.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",4.64,4.81,4.76,5,4.96,5.28]
["TC1500000295.rn.1",4.66,4.29,1.292,"up",0.0383039087351375,0.0411031133332143,"NONMMUG012897","Non-coding transcript identified by NONCODE: Antisense","chr15","+","MTA_TR1400001757.mm","Noncoding",27763311,27764757,30,null,"NA","MTA_TR1400001757.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr15",100,100,{"$nulls":24},"NonCoding",4.88,4.68,4.43,4.27,4.12,4.49]
["TC1600000926.rn.1",5.63,7.12,-2.809,"down",0.0383774199375935,0.0411540318375169,"NONMMUG039989","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","+","MTA_TR0800005781.mm","Noncoding",77308334,77310294,30,null,"NA","MTA_TR0800005781.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",5.69,5.33,5.86,6.88,6.56,7.93]
["TC0400002969.rn.1",6.95,5.85,2.144,"up",0.038495636502882,0.0412581126234395,"NCBI_Gene:100861676","PREDICTED:  uncharacterized LOC100861676 (LOC100861676), miscRNA.","chr4","-","MTA_TR0600007752.mm","Noncoding",87188622,87234196,30,null,"NA","MTA_TR0600007752.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861676 (LOC100861676), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",7.05,7.25,6.55,6.14,5.8,5.61]
["TC0200001095.rn.1",3.31,2.81,1.414,"up",0.038497379656153,0.0412581126234395,"NONMMUG026297","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR0300000550.mm","Noncoding",137400326,137411266,30,null,"NA","MTA_TR0300000550.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",3.46,3.58,2.9,2.76,2.73,2.94]
["TC0700001836.rn.1",6.11,5.49,1.537,"up",0.0385247134181441,0.0412788549707982,"NONMMUG015478","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","+","MTA_TR1500003165.mm","Noncoding",141751335,141753016,30,null,"NA","MTA_TR1500003165.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",5.65,6.14,6.55,5.19,5.44,5.85]
["TC1300001990.rn.1",3.86,4.63,-1.705,"down",0.0385854213399742,0.0413286073558202,"NONMMUG002503","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","-","MTA_TR0100011588.mm","Noncoding",93284067,93285370,30,null,"NA","MTA_TR0100011588.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",4.03,3.83,3.73,3.98,4.63,5.29]
["TC1900001153.rn.1",4.48,4.05,1.347,"up",0.0386220101444355,0.0413499499672721,"LOC102553502","uncharacterized LOC102553502","chr19","-","mRNARGD7711959_1","Noncoding",23326634,23390173,30,null,"NA","mRNARGD7711959_1","Rat Genome Database","uncharacterized LOC102553502","chr19",100,100,{"$nulls":24},"NonCoding",4.37,4.24,4.82,4.09,4.06,3.99]
["TC0300001551.rn.1",12.24,11.81,1.347,"up",0.0387102687943594,0.041411262423132,"Metazoa_SRP",null,"chr3","+",null,"Noncoding",113068616,113068700,30,null,"NA","ENSRNOT00000063335","ENSEMBL","ncrna:novel chromosome:Rnor_5.0:3:119608513:119608597:1 gene:ENSRNOG00000041582 gene_biotype:misc_RNA transcript_biotype:misc_RNA","chr3",100,100,{"$nulls":24},"NonCoding",12.14,12.44,12.14,11.76,11.77,11.91]
["TC0500003004.rn.1",3.27,3.61,-1.266,"down",0.0387762721425723,0.0414691019755355,"LOC102556039","uncharacterized LOC102556039","chr5","-","mRNARGD7509923_1","Noncoding",98390704,98420858,30,null,"NA","mRNARGD7509923_1","Rat Genome Database","uncharacterized LOC102556039","chr5",100,100,{"$nulls":24},"NonCoding",3.05,3.4,3.36,3.57,3.41,3.84]
["TC0100005582.rn.1",6.03,7.35,-2.497,"down",0.0388118169263547,0.0414968961548414,"LOC102552345","uncharacterized LOC102552345","chr1","-","mRNARGD7710972_1","Noncoding",117573899,117591147,30,null,"NA","mRNARGD7710972_1","Rat Genome Database","uncharacterized LOC102552345","chr1",100,100,{"$nulls":24},"NonCoding",6.08,6.13,5.88,7.25,7.29,7.51]
["TC0100002021.rn.1",4.14,5.26,-2.173,"down",0.0388508146582515,0.0415283675729793,"NONMMUG038691","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR0700004602.mm","Noncoding",155752326,155755452,30,null,"NA","MTA_TR0700004602.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.39,3.67,4.37,4.4,5.11,6.28]
["TC1800001742.rn.1",3.41,3.75,-1.266,"down",0.038920056511477,0.0415819116588269,"ENSMUSG00000082784","predicted gene 15957, glyceraldehyde-3-phosphate dehydrogenase (Gapdh) pseudogene","chr18","-","MTA_TR1800004878.mm","Pseudogene",73591208,73592215,30,null,"NA","MTA_TR1800004878.mm","MTA2Rn6","predicted gene 15957, glyceraldehyde-3-phosphate dehydrogenase (Gapdh) pseudogene","chr18",100,100,{"$nulls":24},"Pseudogene",3.61,3.5,3.13,3.58,3.81,3.87]
["TC1300000870.rn.1",6.89,6.15,1.67,"up",0.0390416869458632,0.0416887843580397,"NONMMUG002551","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","+","MTA_TR0100005548.mm","Noncoding",96123752,96124387,30,null,"NA","MTA_TR0100005548.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",6.53,6.92,7.22,5.75,5.89,6.82]
["TC1100001874.rn.1",4.37,3.83,1.454,"up",0.0391803853206982,0.041806048735003,"NONMMUG016082","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","-","MTA_TR1600001428.mm","Noncoding",80959485,80962787,30,null,"NA","MTA_TR1600001428.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",4.22,4.27,4.63,3.64,3.89,3.96]
["TC0800000456.rn.1",6.64,4.45,4.563,"up",0.0392692321875625,0.0418802696666348,"LOC102554963","uncharacterized LOC102554963","chr8","+","mRNARGD7707248_1","Noncoding",42172034,42175461,30,null,"NA","mRNARGD7707248_1","Rat Genome Database","uncharacterized LOC102554963","chr8",100,100,{"$nulls":24},"NonCoding",6.15,7.98,5.79,4.58,4.46,4.3]
["TC0700000959.rn.1",4.35,3.91,1.357,"up",0.0393325149727714,0.041916878379878,"NONMMUG014302","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","+","MTA_TR1500000711.mm","Noncoding",74132882,74134391,30,null,"NA","MTA_TR1500000711.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",4.44,4.27,4.34,3.57,3.81,4.34]
["TC1900000153.rn.1",3.34,3.04,1.231,"up",0.0393549472770259,0.0419330668680131,"NONMMUG041281","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19","+","MTA_TR0800008354.mm","Noncoding",15205657,15206613,30,null,"NA","MTA_TR0800008354.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19",100,100,{"$nulls":24},"NonCoding",3.16,3.64,3.21,3.03,3.01,3.07]
["TC0100001895.rn.1",7.46,5.69,3.411,"up",0.0393808830221197,0.0419555546750838,null,null,"chr1","+",null,"Noncoding",143961777,143963055,30,null,"NA","NONRATT001657","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",6.98,8.79,6.6,5.03,5.78,6.27]
["TC1500001255.rn.1",3.72,4.12,-1.32,"down",0.0394164150204121,0.0419807234978103,"NONMMUG012344","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15","-","MTA_TR1400000595.mm","Noncoding",3272915,3274476,30,null,"NA","MTA_TR1400000595.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15",100,100,{"$nulls":24},"NonCoding",3.5,3.91,3.76,3.92,3.98,4.45]
["TC0600003285.rn.1",5.34,5.64,-1.231,"down",0.0395280142913674,0.0420710211540557,null,null,"chr6","-",null,"Pseudogene",138304333,138305129,30,null,"NA","ENSRNOT00000007263","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:6:147298123:147298919:-1 gene:ENSRNOG00000005463 gene_biotype:pseudogene transcript_biotype:pseudogene","chr6",100,100,{"$nulls":24},"Pseudogene",5.25,5.47,5.29,5.77,5.7,5.46]
["TC0400002398.rn.1",5.87,4.48,2.621,"up",0.0395949164388408,0.0421190014365648,"LOC102552201","uncharacterized LOC102552201","chr4","-","mRNARGD7591494_1","Noncoding",29649209,29654135,30,null,"NA","mRNARGD7591494_1","Rat Genome Database","uncharacterized LOC102552201","chr4",100,100,{"$nulls":24},"NonCoding",5.31,6.72,5.58,4.02,4.65,4.78]
["TC0200003456.rn.1",5.06,4.28,1.717,"up",0.0396893152491549,0.0422030964340179,"NONMMUG026309","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300005857.mm","Noncoding",119001535,119001750,30,null,"NA","MTA_TR0300005857.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",4.53,4.8,5.85,4.02,4.36,4.46]
["TC0300001780.rn.1",3.54,3.26,1.214,"up",0.0397138489555386,0.0422144945665562,"LOC102554973","uncharacterized LOC102554973","chr3","+","mRNARGD7664315_1","Noncoding",125775512,125786263,40,null,"NA","mRNARGD7664315_1","Rat Genome Database","uncharacterized LOC102554973","chr3",100,100,{"$nulls":24},"NonCoding",3.59,3.51,3.51,3.23,3.18,3.37]
["TC1500001191.rn.1",3.81,2.87,1.919,"up",0.0397537915707084,0.0422405782744096,"LOC367354","similar to spermiogenesis specific transcript on the Y 2","chr15","+","ENSRNOT00000073613","Pseudogene",107531860,107532603,30,null,367354,"ENSRNOT00000073613","ENSEMBL","ensembl:known chromosome:Rnor_5.0:15:110923441:110924140:1 gene:ENSRNOG00000049163 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,null,null,"ENSRNOT00000073613","Rn.233594",{"$nulls":20},"Pseudogene",3.78,3.8,3.84,2.79,2.95,2.88]
["TC0100000189.rn.1",9.47,7.77,3.249,"up",0.0397836948477485,0.0422654616353886,null,null,"chr1","+",null,"Noncoding",17645229,17645827,30,null,"NA","NONRATT000119","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",8.91,10.6,8.89,6.75,7.83,8.74]
["TC0X00001401.rn.1",3.38,3.78,-1.32,"down",0.0398553964590178,0.0423183430250366,"LOC102549516","uncharacterized LOC102549516","chrX","-","mRNARGD7697266_1","Noncoding",3664651,3669769,23,null,"NA","mRNARGD7697266_1","Rat Genome Database","uncharacterized LOC102549516","chrX",100,100,{"$nulls":24},"NonCoding",3.41,3.23,3.5,3.69,3.52,4.12]
["TC0900001904.rn.1",7.69,7.15,1.454,"up",0.0398822887367654,0.0423391332669041,null,null,"chr9","-",null,"Pseudogene",49777513,49779056,30,null,"NA","ENSRNOT00000044621","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:49448076:49449619:-1 gene:ENSRNOG00000024652 gene_biotype:pseudogene transcript_biotype:pseudogene","chr9",100,100,{"$nulls":24},"Pseudogene",7.67,7.82,7.58,7.36,6.82,7.27]
["TC0600001263.rn.1",5.32,6.62,-2.462,"down",0.0400205011997713,0.0424650984265608,"NONMMUG009647","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200002633.mm","Noncoding",113131301,113131553,30,null,"NA","MTA_TR1200002633.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",5.09,4.82,6.04,6.2,6.33,7.32]
["TC0100006567.rn.1",4.26,3.75,1.424,"up",0.040137742884239,0.0425609041412597,"LOC102553111","uncharacterized LOC102553111","chr1","-","mRNARGD7594665_1","Noncoding",192860364,192870435,30,null,"NA","mRNARGD7594665_1","Rat Genome Database","uncharacterized LOC102553111","chr1",100,100,{"$nulls":24},"NonCoding",4.08,4.6,4.11,3.77,3.67,3.81]
["TC0800002885.rn.1",4.71,4.33,1.301,"up",0.0401687038212795,0.0425859355556574,"KnowTID_00007732","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8","-","MTA_TR0900008445.mm","Noncoding",78339335,78340757,30,null,"NA","MTA_TR0900008445.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",4.9,4.75,4.49,4.03,4.44,4.53]
["TC0200004862.rn.1",5.93,4.93,2,"up",0.0401795588217053,0.0425884361872478,"NONMMUG028188","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300010288.mm","Noncoding",251964131,251964796,30,null,"NA","MTA_TR0300010288.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.74,6.25,5.81,4.55,5.11,5.12]
["TC0100001627.rn.1",6.63,7.99,-2.567,"down",0.0401808693035982,0.0425884361872478,"LOC102553228","uncharacterized LOC102553228","chr1","+","mRNARGD7691709_1","Noncoding",118134413,118186020,43,null,"NA","mRNARGD7691709_1","Rat Genome Database","uncharacterized LOC102553228","chr1",100,100,{"$nulls":24},"NonCoding",6.54,6.7,6.64,8.06,8.03,7.88]
["TC0400002270.rn.1",13.95,13.17,1.717,"up",0.0402873299369765,0.0426685780035502,null,null,"chr4","-",null,"Pseudogene",15697475,15698346,30,null,"NA","ENSRNOT00000060915","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:15671898:15672769:-1 gene:ENSRNOG00000039721 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",13.78,14.7,13.37,13.01,13.09,13.41]
["TC0200004254.rn.1",5.82,5.02,1.741,"up",0.0402885879520018,0.0426685780035502,"NONMMUG027336","Non-coding transcript identified by NONCODE: Antisense","chr2","-","MTA_TR0300008356.mm","Noncoding",198685642,198686971,30,null,"NA","MTA_TR0300008356.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",5.82,5.66,5.98,5.4,4.99,4.66]
["TC0600001636.rn.1",9.22,8.49,1.659,"up",0.0404614753179279,0.0428153196727416,"NONMMUG010080","Non-coding transcript identified by NONCODE: Linc","chr6","+","MTA_TR1200003696.mm","Noncoding",137276905,137277716,40,null,"NA","MTA_TR1200003696.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",9.35,9.55,8.76,8.57,8.22,8.69]
["TC0800002288.rn.1",5.67,4.2,2.77,"up",0.0404826415224619,0.0428298901203901,"LOC102550102","uncharacterized LOC102550102","chr8","-","mRNARGD7711550_1","Noncoding",41155177,41156764,50,null,"NA","mRNARGD7711550_1","Rat Genome Database","uncharacterized LOC102550102","chr8",100,100,{"$nulls":24},"NonCoding",5.26,6.62,5.14,4.1,4.35,4.14]
["TC0300001136.rn.1",3.91,4.23,-1.248,"down",0.0406791446754341,0.0429888587094863,"NONMMUG023774","Non-coding transcript identified by NONCODE: Antisense","chr3","+","MTA_TR0200004503.mm","Noncoding",80097987,80099504,30,null,"NA","MTA_TR0200004503.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",4,4.1,3.64,4.16,4.13,4.39]
["TC0700003322.rn.1",3.16,3.65,-1.404,"down",0.0407131209839404,0.0430108632616936,"NONMMUG014768","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500005038.mm","Noncoding",115073263,115076351,30,null,"NA","MTA_TR1500005038.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",3.06,3.31,3.12,3.31,3.55,4.08]
["TC0700000922.rn.1",7.5,8.43,-1.905,"down",0.0408104645055185,0.043077023693587,null,null,"chr7","+",null,"Noncoding",71357691,71358472,30,null,"NA","NONRATT049730","NONCODE","Non-coding transcript identified by NONCODE","chr7",100,100,{"$nulls":24},"NonCoding",7.81,6.89,7.8,8.54,8.68,8.06]
["TC1400000673.rn.1",7.53,10.07,-5.816,"down",0.0408341785715628,0.0430941990259184,"NONMMUG032422","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500008455.mm","Noncoding",66038367,66039617,30,null,"NA","MTA_TR0500008455.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",7.83,6.99,7.77,9.46,9.76,10.98]
["TC0X00002093.rn.1",4.53,5.18,-1.569,"down",0.0409767867750432,0.0432069088910447,"NONMMUG045680","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX","-","MTA_TR0X00008013.mm","Noncoding",82893865,82894117,30,null,"NA","MTA_TR0X00008013.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chrX",100,100,{"$nulls":24},"NonCoding",4.83,4.35,4.41,4.93,4.8,5.8]
["TC1800000575.rn.1",6.66,7,-1.266,"down",0.0409782870289541,0.0432069088910447,"KnowTID_00003852","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr18","+","MTA_TR1800001717.mm","Noncoding",52986591,52987019,30,null,"NA","MTA_TR1800001717.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",6.85,6.69,6.43,6.81,7.24,6.94]
["TC1600001690.rn.1",5.77,5.5,1.206,"up",0.0410159692767163,0.0432354183999565,null,null,"chr16","-",null,"Noncoding",53869021,53870541,30,null,"NA","NONRATT023372","NONCODE","Non-coding transcript identified by NONCODE","chr16",100,100,{"$nulls":24},"NonCoding",5.68,5.87,5.77,5.43,5.72,5.36]
["TC0700000612.rn.1",7.63,9.93,-4.925,"down",0.041017770723118,0.0432354183999565,"LOC102555200","uncharacterized LOC102555200","chr7","+","mRNARGD7692281_1","Noncoding",43249399,43626936,40,null,"NA","mRNARGD7692281_1","Rat Genome Database","uncharacterized LOC102555200","chr7",100,100,{"$nulls":24},"NonCoding",7.42,7.56,7.9,10.01,9.68,10.11]
["TC1000001770.rn.1",5.61,6.1,-1.404,"down",0.0411481167241394,0.0433214113050021,"NONMMUG007809","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","+","MTA_TR1100006770.mm","Noncoding",93910126,93910630,30,null,"NA","MTA_TR1100006770.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",5.39,5.42,6.01,5.99,6.01,6.31]
["TC0100002171.rn.1",8.09,8.46,-1.292,"down",0.0411655840470458,0.0433333753776047,"LOC102547099","uncharacterized LOC102547099","chr1","+","mRNARGD7499199_1","Noncoding",166727711,166733797,30,null,"NA","mRNARGD7499199_1","Rat Genome Database","uncharacterized LOC102547099","chr1",100,100,{"$nulls":24},"NonCoding",8.23,8.19,7.86,8.34,8.63,8.41]
["TC0X00001065.rn.1",7.4,6.46,1.919,"up",0.0413472772031945,0.04346668798697,"MGI:5012084","PREDICTED:  predicted gene, 19899 (Gm19899), miscRNA.","chrX","+","MTA_TR0X00000930.mm","Noncoding",123705239,123707266,30,null,"NA","MTA_TR0X00000930.mm","MTA2Rn6","PREDICTED:  predicted gene, 19899 (Gm19899), miscRNA.","chrX",100,100,{"$nulls":24},"NonCoding",7.28,7.16,7.76,6.42,6.67,6.3]
["TC0700002838.rn.1",4.94,4.43,1.424,"up",0.0413782621975236,0.0434913651983532,"MGI:5012467","PREDICTED:  predicted gene, 20282 (Gm20282), miscRNA.","chr7","-","MTA_TR1000009461.mm","Noncoding",65004578,65009269,30,null,"NA","MTA_TR1000009461.mm","MTA2Rn6","PREDICTED:  predicted gene, 20282 (Gm20282), miscRNA.","chr7",100,100,{"$nulls":24},"NonCoding",4.81,4.96,5.05,4.54,4.79,3.95]
["TC0700003356.rn.1",4.84,4.47,1.292,"up",0.041418559032558,0.0435205534088171,"LOC102553467","uncharacterized LOC102553467","chr7","-","mRNARGD7681413_1","Noncoding",116525122,116537375,30,null,"NA","mRNARGD7681413_1","Rat Genome Database","uncharacterized LOC102553467","chr7",100,100,{"$nulls":24},"NonCoding",5.11,4.82,4.6,4.27,4.62,4.53]
["TC1400001219.rn.1",4.34,3.92,1.338,"up",0.0414285688638776,0.0435284382589015,"LOC102554541","uncharacterized LOC102554541","chr14","-","mRNARGD7600463_1","Noncoding",1352501,1354526,30,null,"NA","mRNARGD7600463_1","Rat Genome Database","uncharacterized LOC102554541","chr14",100,100,{"$nulls":24},"NonCoding",4.42,4.17,4.42,3.63,3.82,4.3]
["TC0100000972.rn.1",4.05,3.72,1.257,"up",0.0415299085044697,0.0436080419132485,"NONMMUG037345","Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR0700000851.mm","Noncoding",79776814,79777266,30,null,"NA","MTA_TR0700000851.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",4.14,3.77,4.25,3.79,3.72,3.64]
["TC0300000711.rn.1",4.18,4.61,-1.347,"down",0.0415577521542368,0.0436272262447119,null,null,"chr3","+",null,"Noncoding",52509448,52511363,30,null,"NA","NONRATT034898","NONCODE","Non-coding transcript identified by NONCODE","chr3",100,100,{"$nulls":24},"NonCoding",4.3,4.37,3.88,4.36,4.55,4.91]
["TC0200002275.rn.1",9.57,9.26,1.24,"up",0.0416605623257574,0.0437055791534828,"NONMMUG028048","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2","+","MTA_TR0300004682.mm","Noncoding",243085364,243086555,30,null,"NA","MTA_TR0300004682.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2",100,100,{"$nulls":24},"NonCoding",9.68,9.75,9.29,9.33,9.15,9.3]
["TC1800000908.rn.1",3.13,2.85,1.214,"up",0.0416869905558633,0.0437206250646562,"Ctdp1","RNA polymerase II subunit A C-terminal domain phosphatase  [Source:RefSeq peptide;Acc:NP_001099601] Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr18","+","TCONS_00052939","Noncoding",76955013,76956159,30,null,"NA","TCONS_00052939","Chalmel","RNA polymerase II subunit A C-terminal domain phosphatase  [Source:RefSeq peptide;Acc:NP_001099601] Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr18",100,100,{"$nulls":24},"NonCoding",2.99,3.39,3,2.84,2.8,2.91]
["TC1700000354.rn.1",4.7,4.3,1.32,"up",0.041793907712062,0.0438099986459727,"NONMMUG010835","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr17","+","MTA_TR1300001358.mm","Noncoding",21054024,21054532,30,null,"NA","MTA_TR1300001358.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr17",100,100,{"$nulls":24},"NonCoding",4.7,4.81,4.58,4.2,4.18,4.52]
["TC2000000846.rn.1",10.8,11.08,-1.214,"down",0.0418257914449921,0.0438344388048843,null,null,"chr20","+",null,"Noncoding",47435962,47437418,30,null,"NA","NONRATT033437","NONCODE","Non-coding transcript identified by NONCODE","chr20",100,100,{"$nulls":24},"NonCoding",10.84,10.73,10.83,11.01,11.11,11.12]
["TC1500001970.rn.1",4.58,5,-1.338,"down",0.0418893154421248,0.0438904215299566,"ENSMUSG00000098270","N/A, novel transcript, antisense to Entpd4","chr15","-","MTA_TR1400007193.mm","Noncoding",51233751,51236646,30,null,"NA","MTA_TR1400007193.mm","MTA2Rn6","N/A, novel transcript, antisense to Entpd4","chr15",100,100,{"$nulls":24},"NonCoding",4.81,4.73,4.21,4.8,5.16,5.04]
["TC0800002155.rn.1",3.72,4.28,-1.474,"down",0.0419148423106746,0.0439092223964979,"NONMMUG042361","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","-","MTA_TR0900006338.mm","Noncoding",30300688,30300901,30,null,"NA","MTA_TR0900006338.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",3.88,3.62,3.65,3.97,4.14,4.74]
["TC1800001324.rn.1",4.02,4.46,-1.357,"down",0.041928307035404,0.0439134119949077,"blodoy","Unannotated AceView Transcript","chr18","-","blodoy.aSep08","Noncoding",32557218,32570058,57,null,"NA","blodoy.aSep08","Ace View","Unannotated AceView Transcript","chr18",100,100,{"$nulls":24},"NonCoding",3.91,4,4.15,4.23,4.67,4.48]
["TC0200002602.rn.1",4.7,4.22,1.395,"up",0.0419682786703005,0.0439440005293424,"LOC102552037","uncharacterized LOC102552037","chr2","-","mRNARGD7512886_1","Noncoding",21772912,21776024,26,null,"NA","mRNARGD7512886_1","Rat Genome Database","uncharacterized LOC102552037","chr2",100,100,{"$nulls":24},"NonCoding",4.52,5.03,4.55,4.11,4.02,4.53]
["TC0100000587.rn.1",5.71,4.17,2.908,"up",0.0420183076774131,0.0439751790977433,"LOC102556502","uncharacterized LOC102556502","chr1","+","mRNARGD7672763_1","Noncoding",55623524,55639789,30,null,"NA","mRNARGD7672763_1","Rat Genome Database","uncharacterized LOC102556502","chr1",100,100,{"$nulls":24},"NonCoding",5.26,6.7,5.16,4.1,4.12,4.28]
["TC0500002450.rn.1",9.45,8.47,1.972,"up",0.0420372002804268,0.0439818054500422,null,null,"chr5","-",null,"Pseudogene",45556408,45556769,30,null,"NA","ENSRNOT00000072326","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:50172961:50173322:-1 gene:ENSRNOG00000050891 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",9.27,9.81,9.27,7.98,8.51,8.92]
["TC0500002451.rn.1",9.45,8.47,1.972,"up",0.0420372002804268,0.0439818054500422,null,null,"chr5","-",null,"Pseudogene",45729527,45729888,30,null,"NA","ENSRNOT00000036616","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:5:50344579:50344940:-1 gene:ENSRNOG00000048013 gene_biotype:pseudogene transcript_biotype:pseudogene","chr5",100,100,{"$nulls":24},"Pseudogene",9.27,9.81,9.27,7.98,8.51,8.92]
["TC1400001817.rn.1",6.72,4.77,3.864,"up",0.0420760324769591,0.0440096205155205,"LOC102554740","uncharacterized LOC102554740","chr14","-","mRNARGD7534893_1","Noncoding",46632424,46633270,30,null,"NA","mRNARGD7534893_1","Rat Genome Database","uncharacterized LOC102554740","chr14",100,100,{"$nulls":24},"NonCoding",6.22,7.24,6.7,4.45,4.43,5.43]
["TC1300000673.rn.1",3.13,2.84,1.223,"up",0.0421148859710133,0.044036458448352,"KnowTID_00000336","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr13","+","MTA_TR0100004999.mm","Noncoding",83929056,83929790,30,null,"NA","MTA_TR0100004999.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr13",100,100,{"$nulls":24},"NonCoding",3.24,3.06,3.08,2.68,2.91,2.92]
["TC0100000799.rn.1",5.63,6.23,-1.516,"down",0.0421201621014965,0.0440367117168798,"LOC100910305","zinc finger imprinted 3-like","chr1","+","mRNARGD7552303_1","Pseudogene",69978687,69985012,49,null,"NA","mRNARGD7552303_1","Rat Genome Database","zinc finger imprinted 3-like","chr1",100,100,{"$nulls":24},"Pseudogene",5.96,5.57,5.36,5.96,6.77,5.96]
["TC1500000850.rn.1",9.82,10.27,-1.366,"down",0.0421451085723249,0.0440574520677533,"LOC692005","hypothetical protein LOC692005","chr15","+","LOC692005.aSep08-unspliced","Pseudogene",57719371,57720329,40,null,"NA","LOC692005.aSep08-unspliced","Ace View","hypothetical protein LOC692005","chr15",100,100,{"$nulls":24},"Pseudogene",9.82,9.73,9.92,10.09,10.52,10.2]
["TC0200002155.rn.1",4.65,4.28,1.292,"up",0.0421859295819253,0.044086859750188,"NONMMUG027878","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR0300004338.mm","Noncoding",231467097,231484927,38,null,"NA","MTA_TR0300004338.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.89,4.72,4.34,4.16,4.18,4.49]
["TC0200000166.rn.1",3.79,3.33,1.376,"up",0.0422255887331012,0.0441176892747932,"LOC100911530","uncharacterized LOC100911530","chr2","+","mRNARGD6492372_1","Noncoding",23257915,23258315,30,null,"NA","mRNARGD6492372_1","Rat Genome Database","uncharacterized LOC100911530","chr2",100,100,{"$nulls":24},"NonCoding",3.61,4.18,3.58,3.16,3.21,3.63]
["TC1700002262.rn.1",3.95,4.28,-1.257,"down",0.0422737562221719,0.0441494270026663,"uc008iko.1","adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330094G03 product:hypothetical protein, full insert sequence.","chr17","-","MTA_TR0200010478.mm","Noncoding",81769243,81798762,30,null,"NA","MTA_TR0200010478.mm","MTA2Rn6","adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330094G03 product:hypothetical protein, full insert sequence.","chr17",100,100,{"$nulls":24},"NonCoding",3.74,4,4.12,4.27,4.13,4.44]
["TC0100000002.rn.1",7.24,6.68,1.474,"up",0.0422779871538614,0.0441511912257861,"LOC102556184","uncharacterized LOC102556184","chr1","+","mRNARGD7689164_1","Noncoding",238215,241565,29,null,"NA","mRNARGD7689164_1","Rat Genome Database","uncharacterized LOC102556184","chr1",100,100,{"$nulls":24},"NonCoding",6.95,7.62,7.14,6.83,6.83,6.39]
["TC1900001106.rn.1",15.15,14.75,1.32,"up",0.042285981477875,0.0441548910750051,null,null,"chr19","-",null,"Pseudogene",19987817,19991093,30,null,"NA","ENSRNOT00000071661","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:19:31010733:31014009:-1 gene:ENSRNOG00000048740 gene_biotype:pseudogene transcript_biotype:pseudogene","chr19",100,100,{"$nulls":24},"Pseudogene",15.04,15.54,14.87,14.67,14.89,14.7]
["TC1400001339.rn.1",4.67,4.4,1.206,"up",0.0423031473388961,0.0441641909023357,"LOC102546534","uncharacterized LOC102546534","chr14","-","mRNARGD7702900_1","Noncoding",7657928,7660003,40,null,"NA","mRNARGD7702900_1","Rat Genome Database","uncharacterized LOC102546534","chr14",100,100,{"$nulls":24},"NonCoding",4.81,4.6,4.61,4.61,4.2,4.4]
["TC1600001775.rn.1",5.27,4.6,1.591,"up",0.0424504153501515,0.0442913187006716,"NONMMUG040295","Non-coding transcript identified by NONCODE: Linc","chr16","-","MTA_TR0800001272.mm","Noncoding",61366512,61367309,30,null,"NA","MTA_TR0800001272.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr16",100,100,{"$nulls":24},"NonCoding",5.44,5.68,4.7,4.7,4.29,4.8]
["TC0500000520.rn.1",5.01,4.65,1.283,"up",0.0424804523687631,0.0443120121358184,"NONMMUG029025","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","+","MTA_TR0400001227.mm","Noncoding",58622104,58622993,30,null,"NA","MTA_TR0400001227.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",5.07,5.2,4.77,4.77,4.77,4.4]
["TC0500002417.rn.1",3.94,4.33,-1.31,"down",0.0424909958014517,0.0443203487490703,"KnowTID_00005378","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400007900.mm","Noncoding",38534871,38542464,30,null,"NA","MTA_TR0400007900.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",3.87,4.15,3.8,4.15,4.15,4.7]
["TC0500002137.rn.1",6.99,8.71,-3.294,"down",0.0424976130863323,0.0443245894279603,"NONMMUG000152","Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0100000283.mm","Noncoding",2971917,2974867,30,null,"NA","MTA_TR0100000283.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",6.8,7.09,7.09,8.68,8.79,8.66]
["TC1200000902.rn.1",7.68,9.11,-2.694,"down",0.0425085607213569,0.0443333458387783,"LOC100909860","uncharacterized LOC100909860","chr12","-","mRNARGD6501162_1","Pseudogene",587061,591116,30,null,"NA","mRNARGD6501162_1","Rat Genome Database","uncharacterized LOC100909860","chr12",100,100,{"$nulls":24},"Pseudogene",7.62,7.99,7.42,9.12,9.12,9.1]
["TC0600000362.rn.1",7.1,6.26,1.79,"up",0.0425390895942913,0.0443545333338796,"LOC102552148","uncharacterized LOC102552148","chr6","+","mRNARGD7652543_1","Noncoding",30402666,30403998,22,null,"NA","mRNARGD7652543_1","Rat Genome Database","uncharacterized LOC102552148","chr6",100,100,{"$nulls":24},"NonCoding",6.92,7.67,6.72,6.06,6.19,6.54]
["TC0X00000557.rn.1",14.62,14.03,1.505,"up",0.0425630014912987,0.044371475658966,null,null,"chrX","+",null,"Pseudogene",65861747,65862429,30,null,"NA","ENSRNOT00000073791","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:66692881:66693563:1 gene:ENSRNOG00000049434 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",14.42,15.19,14.24,14.09,14.09,13.92]
["TC1300000181.rn.1",4.19,3.71,1.395,"up",0.0425993442129889,0.0443960408161645,null,null,"chr13","+",null,"Pseudogene",43079651,43080370,30,null,"NA","ENSRNOT00000004775","ENSEMBL","ensembl:known chromosome:Rnor_5.0:13:48181070:48181789:1 gene:ENSRNOG00000003591 gene_biotype:pseudogene transcript_biotype:pseudogene","chr13",100,100,null,null,"ENSRNOT00000004775","Rn.203144","adrenal gland| brain| colon| dorsal root ganglion| eye| heart| kidney| liver| lung| pituitary gland| small intestine| thymus| metamorphosing embryo| fetus| adult",{"$nulls":19},"Pseudogene",4.23,4.1,4.24,3.63,3.78,3.73]
["TC0400001042.rn.1",3.85,4.37,-1.434,"down",0.0427025211663813,0.044476885428781,"NONMMUG035519","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600002492.mm","Noncoding",92353767,92356888,30,null,"NA","MTA_TR0600002492.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",3.85,3.84,3.85,4.08,4.19,4.83]
["TC0100003659.rn.1",4.61,4.98,-1.292,"down",0.0427108030765007,0.0444828443097244,"LOC102546432","uncharacterized LOC102546432","chr1","+","mRNARGD7733546_1","Noncoding",263269832,263280158,40,null,"NA","mRNARGD7733546_1","Rat Genome Database","uncharacterized LOC102546432","chr1",100,100,{"$nulls":24},"NonCoding",4.5,4.67,4.67,4.95,5.23,4.75]
["TC0600000008.rn.1",4.59,4.3,1.223,"up",0.0427293584383959,0.0444995015247827,"NONMMUG018914","Non-coding transcript identified by NONCODE: Antisense","chr6","+","MTA_TR1700004402.mm","Noncoding",986025,988275,30,null,"NA","MTA_TR1700004402.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr6",100,100,{"$nulls":24},"NonCoding",4.37,4.65,4.75,4.44,4.13,4.34]
["TC0300002736.rn.1",9.39,9.06,1.257,"up",0.0427350198948929,0.0445023791475491,"LOC100911266","uncharacterized LOC100911266","chr3","-","mRNARGD7742239_1","Noncoding",4092292,4094912,100,null,"NA","mRNARGD7742239_1","Rat Genome Database","uncharacterized LOC100911266","chr3",100,100,{"$nulls":24},"NonCoding",9.32,9.32,9.52,9.3,8.93,8.94]
["TC0500000179.rn.1",3.92,4.37,-1.366,"down",0.0427473919260839,0.0445102766377752,"NONMMUG028480","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","+","MTA_TR0400000204.mm","Noncoding",22522501,22523315,30,null,"NA","MTA_TR0400000204.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",3.71,3.97,4.09,4.18,4.33,4.59]
["TC0100002112.rn.1",6.51,5.32,2.282,"up",0.042824228461689,0.044571580144278,"NCBI_Gene:100861604","PREDICTED:  uncharacterized LOC100861604 (LOC100861604), miscRNA.","chr1","+","MTA_TR0700004836.mm","Noncoding",164300961,164301719,30,null,"NA","MTA_TR0700004836.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861604 (LOC100861604), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",6.16,6.49,6.89,5.03,5.35,5.57]
["TC0700002969.rn.1",7.45,6.58,1.828,"up",0.0428431408924788,0.0445859214260274,null,null,"chr7","-",null,"Noncoding",73693518,73694084,30,null,"NA","NONRATT051579","NONCODE","Non-coding transcript identified by NONCODE","chr7",100,100,{"$nulls":24},"NonCoding",7.41,7.96,6.97,6.53,6.41,6.81]
["TC1200000572.rn.1",4.4,3.22,2.266,"up",0.0428645535815926,0.0445948469944209,null,null,"chr12","+",null,"Pseudogene",36032756,36033457,30,null,"NA","ENSRNOT00000074474","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:37911464:37912165:1 gene:ENSRNOG00000045724 gene_biotype:pseudogene transcript_biotype:pseudogene","chr12",100,100,{"$nulls":24},"Pseudogene",4.2,5.03,3.97,3.06,3.27,3.32]
["TC1200000573.rn.1",4.4,3.22,2.266,"up",0.0428645535815926,0.0445948469944209,null,null,"chr12","+",null,"Pseudogene",36047732,36048433,30,null,"NA","ENSRNOT00000072843","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:12:37926440:37927141:1 gene:ENSRNOG00000050127 gene_biotype:pseudogene transcript_biotype:pseudogene","chr12",100,100,{"$nulls":24},"Pseudogene",4.2,5.03,3.97,3.06,3.27,3.32]
["TC0400003424.rn.1",4.58,4.92,-1.266,"down",0.0428972466238295,0.0446261870345276,"LOC500269","null","chr4","-","mRNARGD6710109_t00","Pseudogene",130078294,130082491,30,null,"NA","mRNARGD6710109_t00","Rat Genome Database","null","chr4",100,100,{"$nulls":24},"Pseudogene",4.72,4.56,4.47,5.09,4.63,5.04]
["TC0500001453.rn.1",4.16,4.43,-1.206,"down",0.0429109517980324,0.0446350984241689,"LOC102546562","uncharacterized LOC102546562","chr5","+","mRNARGD7533131_1","Noncoding",143554872,143566453,40,null,"NA","mRNARGD7533131_1","Rat Genome Database","uncharacterized LOC102546562","chr5",100,100,{"$nulls":24},"NonCoding",4.31,3.92,4.26,4.31,4.51,4.47]
["TC1000003990.rn.1",4.57,3.94,1.548,"up",0.0429929344733525,0.0447016379204289,"NONMMUG007891","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1100015018.mm","Noncoding",95591455,95594274,30,null,"NA","MTA_TR1100015018.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",4.46,4.46,4.78,3.81,3.8,4.2]
["TC1400002019.rn.1",4.06,3.64,1.338,"up",0.0430427559116989,0.0447320199187629,"NONMMUG032289","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr14","-","MTA_TR0500001628.mm","Noncoding",77029257,77029978,30,null,"NA","MTA_TR0500001628.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr14",100,100,{"$nulls":24},"NonCoding",3.85,4.49,3.85,3.74,3.48,3.69]
["TC1300001376.rn.1",6.14,5.31,1.778,"up",0.043080521377982,0.0447632334523822,"NONMMUG001728","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","-","MTA_TR0100009637.mm","Noncoding",47858707,47859183,30,null,"NA","MTA_TR0100009637.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",5.83,6.04,6.54,5.13,5.19,5.61]
["TC1500001416.rn.1",4.73,4.37,1.283,"up",0.0431352628144275,0.0448120716673297,"NONMMUG012184","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15","-","MTA_TR1400000268.mm","Noncoding",18580765,18584057,30,null,"NA","MTA_TR1400000268.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15",100,100,{"$nulls":24},"NonCoding",4.54,4.81,4.84,4.17,4.3,4.65]
["TC0900002329.rn.1",5.76,5.14,1.537,"up",0.0431418022712327,0.0448161851006807,"NONMMUG001127","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR0100008550.mm","Noncoding",86541947,86543227,30,null,"NA","MTA_TR0100008550.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",5.5,5.73,6.04,4.97,4.74,5.7]
["TC0800003374.rn.1",9.97,9.32,1.569,"up",0.0431617518182572,0.0448315469286622,"NONMMUG023202","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","-","MTA_TR0200003146.mm","Noncoding",117115430,117115843,30,null,"NA","MTA_TR0200003146.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",9.97,9.79,10.16,9.46,9.28,9.21]
["TC1300001697.rn.1",3.97,3.64,1.257,"up",0.0431941284240346,0.0448598113627828,"NONMMUG002140","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","-","MTA_TR0100010580.mm","Noncoding",74297080,74298534,30,null,"NA","MTA_TR0100010580.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",4,4.03,3.87,3.66,3.85,3.4]
["TC0200003170.rn.1",4.51,4.22,1.223,"up",0.0432155699959985,0.0448793965684516,"LOC102549718","uncharacterized LOC102549718","chr2","-","mRNARGD7601852_1","Noncoding",80161496,80162808,30,null,"NA","mRNARGD7601852_1","Rat Genome Database","uncharacterized LOC102549718","chr2",100,100,{"$nulls":24},"NonCoding",4.6,4.52,4.42,4.08,4.1,4.48]
["TC0200003874.rn.1",3.42,3.73,-1.24,"down",0.0432853594836803,0.044935834637886,"NONMMUG026865","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300006930.mm","Noncoding",171151665,171152832,30,null,"NA","MTA_TR0300006930.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",3.58,3.43,3.26,3.48,3.86,3.84]
["TC0400000632.rn.1",4.77,5.12,-1.275,"down",0.0433086346637857,0.04494917205859,"RGD1565367","PREDICTED: similar to Solute carrier family 23, member 2 (Sodium-dependent vitamin C transporter 2) (RGD1565367), mRNA. Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4","+","TCONS_00083930","Noncoding",62498662,62499328,30,null,"NA","TCONS_00083930","Chalmel","PREDICTED: similar to Solute carrier family 23, member 2 (Sodium-dependent vitamin C transporter 2) (RGD1565367), mRNA. Chalmel, et. al. Testis-expressed Unannotated Transcripts (TUTs)","chr4",100,100,{"$nulls":24},"NonCoding",4.88,4.76,4.67,5.34,4.94,5.08]
["TC0100002778.rn.1",4.85,4.44,1.329,"up",0.0433961005968666,0.0450135697368949,"NONMMUG039521","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR0700006949.mm","Noncoding",207184477,207190017,30,null,"NA","MTA_TR0700006949.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.72,4.99,4.84,4.39,4.47,4.45]
["TC0900000277.rn.1",5.24,4.73,1.424,"up",0.0434568607514054,0.0450599372120016,"NONMMUG018368","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr9","+","MTA_TR1700007913.mm","Noncoding",19792116,19792422,30,null,"NA","MTA_TR1700007913.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr9",100,100,{"$nulls":24},"NonCoding",5.27,5.4,5.04,4.87,4.29,5.04]
["TC1000000604.rn.1",4.97,4.24,1.659,"up",0.0435424467381499,0.0451312598866136,"LOC100910746","uncharacterized LOC100910746","chr10","+","mRNARGD6497139_1","Noncoding",39971308,39972693,30,null,"NA","mRNARGD6497139_1","Rat Genome Database","uncharacterized LOC100910746","chr10",100,100,{"$nulls":24},"NonCoding",4.58,4.81,5.52,4.26,4.11,4.35]
["TC0600001916.rn.1",5.95,7.57,-3.074,"down",0.0435507383346682,0.0451352057634011,"NONMMUG019164","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","-","MTA_TR1700009868.mm","Noncoding",14154440,14160966,30,null,"NA","MTA_TR1700009868.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",6.18,5.8,5.87,6.84,7.32,8.55]
["TC1100001392.rn.1",5.94,4.98,1.945,"up",0.0435528362792084,0.0451352057634011,"LOC102551169","uncharacterized LOC102551169","chr11","-","mRNARGD7730152_1","Noncoding",37438473,37446038,30,null,"NA","mRNARGD7730152_1","Rat Genome Database","uncharacterized LOC102551169","chr11",100,100,{"$nulls":24},"NonCoding",5.47,5.93,6.43,4.43,4.74,5.77]
["TC0600001161.rn.1",4.45,4.73,-1.214,"down",0.0435950216132825,0.0451762286252061,"LOC102556188","uncharacterized LOC102556188","chr6","+","mRNARGD7532123_1","Noncoding",107902207,107958181,30,null,"NA","mRNARGD7532123_1","Rat Genome Database","uncharacterized LOC102556188","chr6",100,100,{"$nulls":24},"NonCoding",4.58,4.51,4.27,4.54,4.87,4.79]
["TC1400001924.rn.1",3.98,3.7,1.214,"up",0.0436072403354392,0.0451834996639973,"NONMMUG032432","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr14","-","MTA_TR0500001801.mm","Noncoding",65150127,65205274,40,null,"NA","MTA_TR0500001801.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr14",100,100,{"$nulls":24},"NonCoding",4.07,4.07,3.79,3.51,3.79,3.8]
["TC0100005221.rn.1",8.43,6.6,3.555,"up",0.0436236328107921,0.0451938151425351,null,null,"chr1","-",null,"Noncoding",91251180,91255178,30,null,"NA","NONRATT005066","NONCODE","Non-coding transcript identified by NONCODE","chr1",100,100,{"$nulls":24},"NonCoding",7.55,9.6,8.13,6.04,6.72,7.03]
["TC0400003780.rn.1",7.57,9.11,-2.908,"down",0.0437544912309416,0.0453099260429524,null,null,"chr4","-",null,"Noncoding",159193241,159193775,30,null,"NA","NONRATT042228","NONCODE","Non-coding transcript identified by NONCODE","chr4",100,100,{"$nulls":24},"NonCoding",7.69,7.09,7.93,8.94,9.34,9.05]
["TC0400003340.rn.1",5.59,5.19,1.32,"up",0.0438128990874266,0.0453506060092771,"NCBI_Gene:100861999","PREDICTED:  uncharacterized LOC100861999 (LOC100861999), miscRNA.","chr4","-","MTA_TR0600008981.mm","Noncoding",123126996,123132443,40,null,"NA","MTA_TR0600008981.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861999 (LOC100861999), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",5.72,5.25,5.81,5.05,5.39,5.12]
["TC1500002415.rn.1",5.32,4.49,1.778,"up",0.0438333644927806,0.0453663831389473,"NONMMUG013859","Non-coding transcript identified by NONCODE: Linc","chr15","-","MTA_TR1400008266.mm","Noncoding",106140589,106143759,30,null,"NA","MTA_TR1400008266.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr15",100,100,{"$nulls":24},"NonCoding",5.01,5.44,5.5,4.26,4.48,4.72]
["TC0X00001225.rn.1",3.71,3.34,1.292,"up",0.0438403373697705,0.0453685235311317,"ENSMUSG00000028590","RIKEN cDNA D530049N12 gene, Non-coding transcript identified by NONCODE: Antisense, novel transcript (D530049N12Rik)","chrX","+","MTA_TR0400006381.mm","Noncoding",146536446,146538208,40,null,"NA","MTA_TR0400006381.mm","MTA2Rn6","RIKEN cDNA D530049N12 gene, Non-coding transcript identified by NONCODE: Antisense, novel transcript (D530049N12Rik)","chrX",100,100,{"$nulls":24},"NonCoding",3.81,3.92,3.41,3.46,3.08,3.48]
["TC0100000197.rn.1",5.15,4.13,2.028,"up",0.0438830535313836,0.0454069884973591,"NONMMUG003272","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR1000006020.mm","Noncoding",18492901,18494703,30,null,"NA","MTA_TR1000006020.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",5.09,5.35,5,4.23,3.98,4.19]
["TC1400001305.rn.1",6.53,5.69,1.79,"up",0.0439277013141469,0.0454396533989189,"LOC100909496","uncharacterized LOC100909496","chr14","-","mRNARGD7571418_1","Noncoding",5744091,5746954,30,null,"NA","mRNARGD7571418_1","Rat Genome Database","uncharacterized LOC100909496","chr14",100,100,{"$nulls":24},"NonCoding",6.6,6.42,6.56,5.7,5.7,5.67]
["TC0200004966.rn.1",5.14,6.2,-2.085,"down",0.0439497951962105,0.0454570939180335,"NONMMUG028358","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300010623.mm","Noncoding",265343921,265345408,30,null,"NA","MTA_TR0300010623.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.14,4.87,5.4,5.92,5.58,7.09]
["TC0100003640.rn.1",4.77,4.26,1.424,"up",0.0441502627487034,0.0456209752071695,"NONMMUG021394","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR1900002183.mm","Noncoding",261782589,261782838,30,null,"NA","MTA_TR1900002183.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.65,4.76,4.89,4.79,3.97,4.03]
["TC0100004578.rn.1",5.42,5.1,1.248,"up",0.0441711203711157,0.0456316700545139,"LOC102551988","uncharacterized LOC102551988","chr1","-","mRNARGD7640659_1","Noncoding",57637387,57661981,30,null,"NA","mRNARGD7640659_1","Rat Genome Database","uncharacterized LOC102551988","chr1",100,100,{"$nulls":24},"NonCoding",5.17,5.74,5.34,5.06,5.09,5.14]
["TC1000002500.rn.1",4.18,4.53,-1.275,"down",0.044178729617527,0.0456341031210122,"NONMMUG005702","Non-coding transcript identified by NONCODE: Antisense","chr10","-","MTA_TR1100009446.mm","Noncoding",17390689,17394412,30,null,"NA","MTA_TR1100009446.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",4.24,4.04,4.27,4.27,4.55,4.77]
["TC1800000505.rn.1",4.06,3.69,1.292,"up",0.0442208431248982,0.0456694569514035,"NONMMUG019917","Non-coding transcript identified by NONCODE: Linc","chr18","+","MTA_TR1800001563.mm","Noncoding",47397802,47398194,30,null,"NA","MTA_TR1800001563.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr18",100,100,{"$nulls":24},"NonCoding",4.32,4.01,3.85,3.61,3.6,3.85]
["TC0200002555.rn.1",6.5,5.65,1.803,"up",0.0442248540092563,0.0456708839542709,"NONMMUG011524","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR1300006817.mm","Noncoding",13679405,13679849,30,null,"NA","MTA_TR1300006817.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",6.28,6.39,6.82,5.28,5.46,6.2]
["TC1000003550.rn.1",3.16,3.43,-1.206,"down",0.0442490946212013,0.0456862368721805,"NONMMUG007262","Non-coding transcript identified by NONCODE: Linc","chr10","-","MTA_TR1100013125.mm","Noncoding",77833836,77836344,30,null,"NA","MTA_TR1100013125.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",3.24,3.24,3.01,3.24,3.42,3.64]
["TC0700003011.rn.1",4.13,4.55,-1.338,"down",0.0442904361561299,0.0457060931828083,"NONMMUG014357","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","-","MTA_TR1500004260.mm","Noncoding",76371497,76374272,30,null,"NA","MTA_TR1500004260.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",4.01,4.1,4.28,4.3,4.46,4.88]
["TC1600000531.rn.1",4.55,5.11,-1.474,"down",0.0442930768112362,0.0457060931828083,"NONMMUG040553","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","+","MTA_TR0800006845.mm","Noncoding",46650375,46652601,30,null,"NA","MTA_TR0800006845.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",4.69,4.34,4.63,4.98,4.86,5.5]
["TC0300003673.rn.1",5.25,4.75,1.414,"up",0.0443082804164853,0.0457189865824037,"LOC100909723","ATP synthase lipid-binding protein mitochondrial-like","chr3","-","mRNARGD6501906_1","Pseudogene",80866141,80867048,30,null,"NA","mRNARGD6501906_1","Rat Genome Database","ATP synthase lipid-binding protein mitochondrial-like","chr3",100,100,{"$nulls":24},"Pseudogene",5.02,5.24,5.49,4.37,4.79,5.1]
["TC0200003280.rn.1",5.5,5.91,-1.329,"down",0.0443418145515369,0.0457291415681992,"uc008oow.1","cDNA, clone:Y2G0121N23, strand:unspecified.","chr2","-","MTA_TR0300000085.mm","Noncoding",95039944,95040326,30,null,"NA","MTA_TR0300000085.mm","MTA2Rn6","cDNA, clone:Y2G0121N23, strand:unspecified.","chr2",100,100,{"$nulls":24},"NonCoding",5.82,5.18,5.51,5.84,5.98,5.9]
["TC1500001294.rn.1",5.33,4.08,2.378,"up",0.0443536884841715,0.0457343186397976,"LOC102550374","uncharacterized LOC102550374","chr15","-","mRNARGD7643013_1","Noncoding",5139199,5142074,30,null,"NA","mRNARGD7643013_1","Rat Genome Database","uncharacterized LOC102550374","chr15",100,100,{"$nulls":24},"NonCoding",5.11,5.79,5.08,4.15,3.96,4.13]
["TC1700002305.rn.1",6.08,5.35,1.659,"up",0.0443616413664952,0.0457360123554744,"NONMMUG022133","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","-","MTA_TR0200010611.mm","Noncoding",85641791,85643147,30,null,"NA","MTA_TR0200010611.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",5.59,6.09,6.56,4.95,5.28,5.81]
["TC1300001992.rn.1",4.25,5.23,-1.972,"down",0.0443651664162971,0.0457362864662654,"NONMMUG002505","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","-","MTA_TR0100011590.mm","Noncoding",93397046,93399088,30,null,"NA","MTA_TR0100011590.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",4.32,4.12,4.3,4.71,4.78,6.2]
["TC0900000329.rn.1",3.53,3,1.444,"up",0.0443946434820855,0.0457510294214112,"LOC102548884","uncharacterized LOC102548884","chr9","+","mRNARGD7688387_1","Noncoding",24277872,24284366,40,null,"NA","mRNARGD7688387_1","Rat Genome Database","uncharacterized LOC102548884","chr9",100,100,{"$nulls":24},"NonCoding",3.52,3.62,3.45,2.87,3.02,3.1]
["TC0800002740.rn.1",4.1,3.68,1.338,"up",0.0444095841598767,0.0457609969415837,"NONMMUG043066","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","-","MTA_TR0900008033.mm","Noncoding",68867607,68868769,16,null,"NA","MTA_TR0900008033.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",4.03,4.47,3.8,3.77,3.57,3.69]
["TC0900001378.rn.1",4.45,4.13,1.248,"up",0.0444624716281576,0.0458019091889181,"LOC102555595","uncharacterized LOC102555595","chr9","-","mRNARGD7621670_1","Noncoding",1505446,1539148,40,null,"NA","mRNARGD7621670_1","Rat Genome Database","uncharacterized LOC102555595","chr9",100,100,{"$nulls":24},"NonCoding",4.39,4.59,4.36,3.98,4.06,4.36]
["TC1900001269.rn.1",5.93,5.51,1.338,"up",0.0444987185388252,0.0458338120212234,"LOC100359956","SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1","chr19","-","ENSRNOT00000024755","Pseudogene",29800772,29802149,30,"10q32.1",303518,"ENSRNOT00000024755","ENSEMBL","ensembl:known chromosome:Rnor_5.0:19:40711194:40712425:-1 gene:ENSRNOG00000018377 gene_biotype:pseudogene transcript_biotype:pseudogene","chr19",100,100,"ENSRNOT00000024755","Q56A18","ENSRNOT00000024755","Rn.8513","adrenal gland| brain| connective tissue| embryonic tissue| eye| heart| kidney| liver| lung| muscle| pancreas| placenta| prostate| testis|tailbud embryo| metamorphosing embryo| juvenile| adult","ENSRNOT00000024755","GO:0006337","nucleosome disassembly","not recorded","ENSRNOT00000024755","GO:0000790","nuclear chromatin","not recorded","ENSRNOT00000024755","GO:0000978","RNA polymerase II core promoter proximal region sequence-specific DNA binding","not recorded",{"$nulls":7},"Pseudogene",5.73,5.83,6.22,5.83,5.43,5.26]
["TC1100001474.rn.1",7.47,8.09,-1.537,"down",0.0445129193794734,0.0458457020282936,"NONMMUG016719","Non-coding transcript identified by NONCODE: Antisense","chr11","-","MTA_TR1600002688.mm","Noncoding",47067274,47070276,30,null,"NA","MTA_TR1600002688.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr11",100,100,{"$nulls":24},"NonCoding",7.55,7.2,7.67,8.09,8.47,7.72]
["TC0400002656.rn.1",5.74,6.12,-1.301,"down",0.0445596483469728,0.0458829668900572,"MGI:5012144","PREDICTED:  predicted gene, 19959 (Gm19959), miscRNA.","chr4","-","MTA_TR0600006800.mm","Noncoding",61356224,61375450,30,null,"NA","MTA_TR0600006800.mm","MTA2Rn6","PREDICTED:  predicted gene, 19959 (Gm19959), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",5.91,5.75,5.55,6.25,6.28,5.83]
["TC2000000885.rn.1",3.28,2.98,1.231,"up",0.0446055129948656,0.0459140504747454,"LOC102555752","uncharacterized LOC102555752","chr20","+","mRNARGD7717618_1","Noncoding",50165761,50167756,30,null,"NA","mRNARGD7717618_1","Rat Genome Database","uncharacterized LOC102555752","chr20",100,100,{"$nulls":24},"NonCoding",3.1,3.57,3.17,2.91,2.94,3.09]
["TC0500003887.rn.1",3.86,4.21,-1.275,"down",0.0446240643150013,0.0459247953798144,"ENSMUSG00000087476","RIKEN cDNA 1810058N05 gene, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr5","-","MTA_TR0400013150.mm","Noncoding",156042065,156052441,30,null,"NA","MTA_TR0400013150.mm","MTA2Rn6","RIKEN cDNA 1810058N05 gene, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr5",100,100,{"$nulls":24},"NonCoding",3.7,3.95,3.92,4.4,3.95,4.28]
["TC0200001274.rn.1",4.14,4.69,-1.464,"down",0.0446694232485253,0.0459660299301068,"NONMMUG026760","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","+","MTA_TR0300001521.mm","Noncoding",155904474,155904723,30,null,"NA","MTA_TR0300001521.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",3.95,4.36,4.11,4.49,4.39,5.2]
["TC1100001136.rn.1",7.03,8.66,-3.095,"down",0.044709319230199,0.0460016338534494,"NONMMUG016858","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11","-","MTA_TR1600006238.mm","Noncoding",13340266,13342402,30,null,"NA","MTA_TR1600006238.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr11",100,100,{"$nulls":24},"NonCoding",7.11,6.96,7.02,8.31,8.16,9.52]
["TC0600001622.rn.1",5.09,4.74,1.275,"up",0.0447440861591089,0.0460237755015325,"LOC102548948","uncharacterized LOC102548948","chr6","+","mRNARGD7569246_1","Noncoding",136898249,136900509,40,null,"NA","mRNARGD7569246_1","Rat Genome Database","uncharacterized LOC102548948","chr6",100,100,{"$nulls":24},"NonCoding",5.35,5.01,4.91,4.83,4.72,4.67]
["TC0200003386.rn.1",4.55,4.14,1.329,"up",0.0448867742536608,0.0461443833421369,"NONMMUG026220","Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300005720.mm","Noncoding",113108498,113109940,30,null,"NA","MTA_TR0300005720.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.4,4.74,4.52,3.96,4.01,4.44]
["TC1400000500.rn.1",5.6,6.2,-1.516,"down",0.0448879045371843,0.0461443833421369,"LOC102546869","uncharacterized LOC102546869","chr14","+","mRNARGD7519427_1","Noncoding",43144017,43171851,30,null,"NA","mRNARGD7519427_1","Rat Genome Database","uncharacterized LOC102546869","chr14",100,100,{"$nulls":24},"NonCoding",5.59,5.6,5.6,5.75,6.04,6.81]
["TC1000002964.rn.1",5.09,4.65,1.357,"up",0.0449536128204882,0.0461900631908613,"NONMMUG006345","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1100010920.mm","Noncoding",48111167,48111444,30,null,"NA","MTA_TR1100010920.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",5.31,4.98,4.97,4.39,4.62,4.94]
["TC1400000552.rn.1",3.14,3.63,-1.404,"down",0.0449600934928003,0.0461936418818644,"NONMMUG032552","Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR0500008625.mm","Noncoding",45504846,45506740,30,null,"NA","MTA_TR0500008625.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",3.21,3.06,3.16,3.32,3.52,4.05]
["TC0700001585.rn.1",5.53,5.12,1.329,"up",0.0449624141925372,0.0461936418818644,"KnowTID_00002818","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc,  3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630035J15 product:unclassifiable, full insert sequence.","chr7","+","MTA_TR1500002490.mm","Noncoding",126530777,126551114,40,null,"NA","MTA_TR1500002490.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc,  3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630035J15 product:unclassifiable, full insert sequence.","chr7",100,100,{"$nulls":24},"NonCoding",5.48,5.48,5.62,5.17,5.19,5]
["TC0100002519.rn.1",13.68,12.78,1.866,"up",0.045052990316741,0.0462757506381332,null,null,"chr1","+",null,"Pseudogene",191461535,191464427,30,null,"NA","ENSRNOT00000075269","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:198380845:198383737:1 gene:ENSRNOG00000045583 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",13.4,14.52,13.13,12.64,12.84,12.85]
["TC1600002003.rn.1",4.48,4.11,1.292,"up",0.0450642246365862,0.0462845530752758,"NONMMUG039934","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16","-","MTA_TR0800000482.mm","Noncoding",80847641,80848674,30,null,"NA","MTA_TR0800000482.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr16",100,100,{"$nulls":24},"NonCoding",4.42,4.61,4.42,4.32,4.12,3.89]
["TC0400000293.rn.1",4.95,5.34,-1.31,"down",0.0451311000034751,0.0463340625390287,"NONMMUG031667","Non-coding transcript identified by NONCODE: Antisense","chr4","+","MTA_TR0500006747.mm","Noncoding",27665374,27667573,30,null,"NA","MTA_TR0500006747.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr4",100,100,{"$nulls":24},"NonCoding",4.74,5.04,5.06,5.07,5.39,5.55]
["TC0600001075.rn.1",6.71,7.2,-1.404,"down",0.0451613430180554,0.0463541532478516,"uc011ymp.2","non-coding RNA, oocyte_clustered_small_RNA7224, complete sequence.","chr6","+","MTA_TR1200001486.mm","Noncoding",103519552,103519580,5,null,"NA","MTA_TR1200001486.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA7224, complete sequence.","chr6",100,100,{"$nulls":24},"NonCoding",6.94,6.94,6.26,7.37,7.29,6.94]
["TC1500000080.rn.1",5.5,5.12,1.301,"up",0.0451843275763064,0.046372264819096,"LOC102551991","uncharacterized LOC102551991","chr15","+","mRNARGD7525302_1","Noncoding",7848036,7849063,30,null,"NA","mRNARGD7525302_1","Rat Genome Database","uncharacterized LOC102551991","chr15",100,100,{"$nulls":24},"NonCoding",5.49,5.65,5.37,5.07,4.81,5.47]
["TC1100000644.rn.1",4.93,5.26,-1.257,"down",0.0451992801046392,0.0463821298852604,"NONMMUG016428","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr11","+","MTA_TR1600005494.mm","Noncoding",65277242,65278633,30,null,"NA","MTA_TR1600005494.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr11",100,100,{"$nulls":24},"NonCoding",5.15,4.94,4.69,5.43,5.11,5.24]
["TC1000002800.rn.1",6.23,5.7,1.444,"up",0.0452513415953021,0.0464195733278279,"ENSMUSG00000081098","predicted gene 12220, pseudogene similar to part of solute carrier family 22 (organic cation transporter), member 4 Slc22a4","chr10","-","MTA_TR1100010252.mm","Pseudogene",39286627,39286798,30,null,"NA","MTA_TR1100010252.mm","MTA2Rn6","predicted gene 12220, pseudogene similar to part of solute carrier family 22 (organic cation transporter), member 4 Slc22a4","chr10",100,100,{"$nulls":24},"Pseudogene",6.25,5.96,6.49,5.92,5.57,5.61]
["TC0X00002036.rn.1",5.1,5.43,-1.257,"down",0.045251802126155,0.0464195733278279,"ENSMUSG00000087174","RIKEN cDNA 5530601H04 gene, Non-coding transcript identified by NONCODE: Linc, novel transcript","chrX","-","MTA_TR0X00007823.mm","Noncoding",76037758,76042687,110,null,"NA","MTA_TR0X00007823.mm","MTA2Rn6","RIKEN cDNA 5530601H04 gene, Non-coding transcript identified by NONCODE: Linc, novel transcript","chrX",100,100,{"$nulls":24},"NonCoding",5.04,5.12,5.14,5.4,5.14,5.74]
["TC0500001297.rn.1",5.46,4.9,1.474,"up",0.0453469898519307,0.0465034866708713,"ENSMUSG00000086876","predicted gene 12828, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr5","+","MTA_TR0400004042.mm","Noncoding",136305438,136313509,28,null,"NA","MTA_TR0400004042.mm","MTA2Rn6","predicted gene 12828, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr5",100,100,{"$nulls":24},"NonCoding",5.63,5.81,4.95,5.04,4.65,5.02]
["TC1500001008.rn.1",4.27,4.57,-1.231,"down",0.0453662800174854,0.0465205224429598,"NONMMUG013690","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15","+","MTA_TR1400003817.mm","Noncoding",86416588,86417827,30,null,"NA","MTA_TR1400003817.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15",100,100,{"$nulls":24},"NonCoding",4.24,4.1,4.48,4.47,4.47,4.77]
["TC0100001369.rn.1",6.86,5.67,2.282,"up",0.0453951381556236,0.0465363791620736,null,null,"chr1","+",null,"Pseudogene",95647855,95648437,30,null,"NA","ENSRNOT00000075831","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:96738964:96739546:1 gene:ENSRNOG00000048335 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",6.65,7.51,6.43,5.64,6.04,5.34]
["TC0200001306.rn.1",6.86,5.67,2.282,"up",0.0453951381556236,0.0465363791620736,null,null,"chr2","+",null,"Pseudogene",160129865,160130447,30,null,"NA","ENSRNOT00000075231","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:179482734:179483316:1 gene:ENSRNOG00000048727 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",6.65,7.51,6.43,5.64,6.04,5.34]
["TC1400001060.rn.1",6.86,5.67,2.282,"up",0.0453951381556236,0.0465363791620736,null,null,"chr14","+",null,"Pseudogene",101574645,101575227,30,null,"NA","ENSRNOT00000071032","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:14:101340086:101340668:1 gene:ENSRNOG00000049156 gene_biotype:pseudogene transcript_biotype:pseudogene","chr14",100,100,{"$nulls":24},"Pseudogene",6.65,7.51,6.43,5.64,6.04,5.34]
["TC0600002676.rn.1",9.79,13.04,-9.514,"down",0.045413687399986,0.0465526474581115,"KnowTID_00001621","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6","-","MTA_TR1200005361.mm","Noncoding",97863443,97865520,30,null,"NA","MTA_TR1200005361.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr6",100,100,{"$nulls":24},"NonCoding",10.15,9.79,9.42,12.66,12.95,13.51]
["TC0100002444.rn.1",6.4,5.73,1.591,"up",0.0454295723389882,0.0465634352785322,"NONMMUG039128","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR0700014119.mm","Noncoding",185256580,185256906,30,null,"NA","MTA_TR0700014119.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",6.02,6.22,6.95,5.43,5.53,6.22]
["TC1000002190.rn.1",4.6,3.96,1.558,"up",0.045450420693161,0.0465814071394428,"NONMMUG015791","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1600000449.mm","Noncoding",4194526,4199122,30,null,"NA","MTA_TR1600000449.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",4.05,4.7,5.04,3.76,3.84,4.29]
["TC0700000648.rn.1",4.33,5.05,-1.647,"down",0.0455008451709008,0.0466144834550435,"NONMMUG004612","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","+","MTA_TR1000004008.mm","Noncoding",49544137,49549015,30,null,"NA","MTA_TR1000004008.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",4.33,4.29,4.36,4.81,4.52,5.82]
["TC0900001570.rn.1",4.87,4.59,1.214,"up",0.0455078138250943,0.0466188732650653,"NONMMUG018435","Non-coding transcript identified by NONCODE: Antisense","chr9","-","MTA_TR1700003398.mm","Noncoding",16874667,16890789,30,null,"NA","MTA_TR1700003398.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr9",100,100,{"$nulls":24},"NonCoding",4.96,4.89,4.75,4.55,4.46,4.76]
["TC0300000949.rn.1",4.29,5.29,-2,"down",0.0455133796189891,0.0466218255313987,"NONMMUG023601","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","+","MTA_TR0200003982.mm","Noncoding",69291986,69293749,30,null,"NA","MTA_TR0200003982.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.47,4.01,4.4,5.23,4.51,6.14]
["TC0900000990.rn.1",4.38,3.82,1.474,"up",0.0456129553799201,0.0467045474744823,"LOC102554120","uncharacterized LOC102554120","chr9","+","mRNARGD7627952_1","Noncoding",88525689,88535531,40,null,"NA","mRNARGD7627952_1","Rat Genome Database","uncharacterized LOC102554120","chr9",100,100,{"$nulls":24},"NonCoding",4.12,4.74,4.27,3.8,3.79,3.88]
["TC0X00000795.rn.1",13.49,12.85,1.558,"up",0.0456272290983517,0.0467164090927424,null,null,"chrX","+",null,"Pseudogene",84689246,84694752,30,null,"NA","ENSRNOT00000075468","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:X:84632685:84638191:1 gene:ENSRNOG00000048235 gene_biotype:pseudogene transcript_biotype:pseudogene","chrX",100,100,{"$nulls":24},"Pseudogene",13.23,14.08,13.16,12.67,12.71,13.18]
["TC0300003238.rn.1",3.71,4.08,-1.292,"down",0.0456696591685287,0.0467515852092941,"NONMMUG023250","Non-coding transcript identified by NONCODE: Antisense","chr3","-","MTA_TR0200013133.mm","Noncoding",53615426,53641987,60,null,"NA","MTA_TR0200013133.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr3",100,100,{"$nulls":24},"NonCoding",3.81,3.81,3.51,3.81,4.04,4.39]
["TC0700002317.rn.1",6.46,7.45,-1.986,"down",0.0456930484178108,0.0467700161490655,"LOC102555256","uncharacterized LOC102555256","chr7","-","mRNARGD7658987_1","Noncoding",22495653,22502559,38,null,"NA","mRNARGD7658987_1","Rat Genome Database","uncharacterized LOC102555256","chr7",100,100,{"$nulls":24},"NonCoding",5.98,7.06,6.33,6.99,7.58,7.78]
["TC0300004686.rn.1",3.87,4.42,-1.464,"down",0.0457171376782325,0.0467891591709525,"NONMMUG025391","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200017987.mm","Noncoding",158507996,158510396,30,null,"NA","MTA_TR0200017987.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",3.91,3.78,3.93,4.17,4.11,4.98]
["TC0100005554.rn.1",7.96,9.67,-3.272,"down",0.0457529928288751,0.0468196484588582,"LOC102551282","uncharacterized LOC102551282","chr1","-","mRNARGD7497107_1","Noncoding",116740493,116741084,30,null,"NA","mRNARGD7497107_1","Rat Genome Database","uncharacterized LOC102551282","chr1",100,100,{"$nulls":24},"NonCoding",8.18,7.6,8.11,9.4,9.61,9.99]
["TC0400000598.rn.1",4.22,4.51,-1.223,"down",0.0458306411806874,0.0468777052316859,null,null,"chr4","+",null,"Pseudogene",60054287,60054622,30,null,"NA","ENSRNOT00000038047","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:59796091:59796426:1 gene:ENSRNOG00000027692 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",4.02,4.17,4.48,4.53,4.63,4.38]
["TC0300001233.rn.1",5.09,6.27,-2.266,"down",0.0458432914657445,0.0468851231116543,"NONMMUG023910","Non-coding transcript identified by NONCODE: Linc","chr3","+","MTA_TR0200004788.mm","Noncoding",86086401,86086869,30,null,"NA","MTA_TR0200004788.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr3",100,100,{"$nulls":24},"NonCoding",5.31,4.53,5.44,5.97,6.18,6.65]
["TC0500001983.rn.1",3.66,3.93,-1.206,"down",0.0458592287238306,0.0468913790252427,"NONMMUG031469","Non-coding transcript identified by NONCODE: Antisense","chr5","+","MTA_TR0400006834.mm","Noncoding",168707359,168708860,30,null,"NA","MTA_TR0400006834.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr5",100,100,{"$nulls":24},"NonCoding",3.61,3.92,3.46,3.99,3.92,3.88]
["TC1500002037.rn.1",5.86,5.51,1.275,"up",0.0458897193765707,0.0469105111098929,"ENSMUSG00000090706","predicted gene 17233, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr15","-","MTA_TR1400007437.mm","Noncoding",55064618,55080808,30,null,"NA","MTA_TR1400007437.mm","MTA2Rn6","predicted gene 17233, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr15",100,100,{"$nulls":24},"NonCoding",5.87,6.08,5.62,5.49,5.45,5.58]
["TC1500001958.rn.1",9.85,10.15,-1.231,"down",0.0459005633733313,0.0469180322584142,null,null,"chr15","-",null,"Pseudogene",50191754,50192400,30,null,"NA","ENSRNOT00000071294","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:53922143:53922789:-1 gene:ENSRNOG00000050925 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",9.65,9.97,9.93,10.17,10.32,9.97]
["TC0700002681.rn.1",4.31,5.73,-2.676,"down",0.0459761203081283,0.0469685083973178,"KnowTID_00001061","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1000009075.mm","Noncoding",52892932,52895685,30,null,"NA","MTA_TR1000009075.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",4.69,3.86,4.39,4.99,5.12,7.07]
["TC0100005428.rn.1",3.51,3.89,-1.301,"down",0.0459786197383811,0.0469685083973178,"NONMMUG038030","Non-coding transcript identified by NONCODE: Linc","chr1","-","MTA_TR0700011099.mm","Noncoding",102714238,102716344,30,null,"NA","MTA_TR0700011099.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",3.62,3.63,3.28,4.12,3.88,3.67]
["TC0700000751.rn.1",3.96,3.61,1.275,"up",0.0459816046171658,0.0469685083973178,"NONMMUG004772","Non-coding transcript identified by NONCODE: Linc","chr7","+","MTA_TR1000004284.mm","Noncoding",60238878,60243255,50,null,"NA","MTA_TR1000004284.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",3.91,4.28,3.69,3.73,3.47,3.63]
["TC1000001253.rn.1",8.55,8.96,-1.329,"down",0.0460494815175102,0.0470323108796254,"LOC100912181","uncharacterized LOC100912181","chr10","+","mRNARGD7681132_1","Noncoding",70509718,70512822,62,null,"NA","mRNARGD7681132_1","Rat Genome Database","uncharacterized LOC100912181","chr10",100,100,{"$nulls":24},"NonCoding",8.44,8.56,8.66,9.01,9.19,8.68]
["TC0700002677.rn.1",7.7,8.99,-2.445,"down",0.0460860719914675,0.047058614893239,"KnowTID_00001057","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1000009068.mm","Noncoding",52681333,52684905,30,null,"NA","MTA_TR1000009068.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",7.7,7.72,7.68,8.43,8.22,10.32]
["TC1400000677.rn.1",5.11,6.92,-3.506,"down",0.0460958465493618,0.0470658290959245,"NONMMUG032417","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500008451.mm","Noncoding",66113753,66114994,30,null,"NA","MTA_TR0500008451.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",5.3,5,5.04,6.06,6.7,8.01]
["TC1300000214.rn.1",3.69,4.13,-1.357,"down",0.0461320849205982,0.0470945255733258,"NONMMUG001702","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13","+","MTA_TR0100003583.mm","Noncoding",46590884,46594720,30,null,"NA","MTA_TR0100003583.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr13",100,100,{"$nulls":24},"NonCoding",3.73,3.73,3.62,3.86,3.94,4.58]
["TC1800001328.rn.1",3.71,4.07,-1.283,"down",0.0461525352273316,0.0471098654033363,"NONMMUG019782","Non-coding transcript identified by NONCODE: Antisense,  0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430071H23 product:unclassifiable, full insert sequence.","chr18","-","MTA_TR1800003877.mm","Noncoding",33625487,33629758,30,null,"NA","MTA_TR1800003877.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense,  0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430071H23 product:unclassifiable, full insert sequence.","chr18",100,100,{"$nulls":24},"NonCoding",3.42,3.75,3.95,4.24,3.87,4.09]
["TC0700002381.rn.1",6.32,7.55,-2.346,"down",0.0461633787531817,0.0471153967286439,"uc011xju.2","non-coding RNA, oocyte_clustered_small_RNA1711, complete sequence.","chr7","-","MTA_TR1000003185.mm","Noncoding",26463143,26463178,12,null,"NA","MTA_TR1000003185.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA1711, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",6.08,6.07,6.82,8.18,7.85,6.63]
["TC1500001108.rn.1",4.62,4.89,-1.206,"down",0.0461692804195332,0.0471186516754428,"NONMMUG013795","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15","+","MTA_TR1400004003.mm","Noncoding",102423827,102427981,50,null,"NA","MTA_TR1400004003.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15",100,100,{"$nulls":24},"NonCoding",4.36,4.79,4.7,4.84,4.86,4.98]
["TC0900001830.rn.1",5.56,5.03,1.444,"up",0.0462220733823553,0.0471570272185329,"NONMMUG000410","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","-","MTA_TR0100007025.mm","Noncoding",43484827,43489233,30,null,"NA","MTA_TR0100007025.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",5.29,5.56,5.84,5.21,5.01,4.88]
["TC0400002400.rn.1",5.58,5.17,1.329,"up",0.0462231709429486,0.0471570272185329,"NONMMUG034503","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","-","MTA_TR0600006056.mm","Noncoding",29784841,29788198,30,null,"NA","MTA_TR0600006056.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",5.68,5.51,5.54,5.19,4.89,5.42]
["TC1000002015.rn.1",4.05,3.66,1.31,"up",0.046241105513604,0.0471697835384823,"NONMMUG008211","Non-coding transcript identified by NONCODE: Antisense","chr10","+","MTA_TR1100007659.mm","Noncoding",106819319,106821018,30,null,"NA","MTA_TR1100007659.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr10",100,100,{"$nulls":24},"NonCoding",3.82,4.04,4.28,3.43,3.92,3.64]
["TC1000000084.rn.1",10.8,14.42,-12.295,"down",0.0462575638165171,0.047182678526662,"KnowTID_00003239","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1600004006.mm","Noncoding",6126659,6129681,30,null,"NA","MTA_TR1600004006.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",10.93,10.78,10.7,14.21,14.51,14.53]
["TC0500002990.rn.1",6.45,8.06,-3.053,"down",0.0462725185200749,0.0471935133403136,"NONMMUG029626","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5","-","MTA_TR0400009921.mm","Noncoding",94811249,94813419,30,null,"NA","MTA_TR0400009921.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr5",100,100,{"$nulls":24},"NonCoding",6.45,6.23,6.66,7.09,7.93,9.17]
["TC1700000022.rn.1",6.09,5.31,1.717,"up",0.0462930748581451,0.0472089352683362,"NONMMUG011245","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","+","MTA_TR1300002215.mm","Noncoding",1374685,1375094,30,null,"NA","MTA_TR1300002215.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",6.1,6.31,5.86,4.94,4.9,6.09]
["TC0400001304.rn.1",4.21,4.91,-1.625,"down",0.0463233564397621,0.0472333550642859,"NONMMUG035864","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4","+","MTA_TR0600003296.mm","Noncoding",117702245,117703955,30,null,"NA","MTA_TR0600003296.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr4",100,100,{"$nulls":24},"NonCoding",4.37,4.26,3.99,4.65,4.47,5.6]
["TC0100000278.rn.1",4.39,5.24,-1.803,"down",0.0463261265277965,0.0472333550642859,"NONMMUG003356","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","+","MTA_TR1000006162.mm","Noncoding",25175771,25178102,30,null,"NA","MTA_TR1000006162.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.73,4.37,4.06,4.74,4.89,6.08]
["TC0500003614.rn.1",3.21,3.48,-1.206,"down",0.0463278972762249,0.0472333550642859,"NONMMUG030638","Non-coding transcript identified by NONCODE: Linc","chr5","-","MTA_TR0400012060.mm","Noncoding",144441180,144442964,30,null,"NA","MTA_TR0400012060.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",3.26,3.3,3.08,3.3,3.45,3.7]
["TC0200004632.rn.1",4.38,3.99,1.31,"up",0.0463697086006218,0.04726488722576,"NONMMUG027850","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2","-","MTA_TR0300009677.mm","Noncoding",229761164,229762384,25,null,"NA","MTA_TR0300009677.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2",100,100,{"$nulls":24},"NonCoding",4.27,4.7,4.17,3.94,3.81,4.22]
["TC1100001994.rn.1",3.56,4.05,-1.404,"down",0.0463924445940813,0.0472769655663373,"LOC102555584","uncharacterized LOC102555584","chr11","-","mRNARGD7511298_1","Noncoding",87090309,87095186,30,null,"NA","mRNARGD7511298_1","Rat Genome Database","uncharacterized LOC102555584","chr11",100,100,{"$nulls":24},"NonCoding",3.6,3.48,3.6,3.77,4.43,3.96]
["TC0200000644.rn.1",3.94,5.2,-2.395,"down",0.0464061517820999,0.0472881599464338,"NONMMUG014143","Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR1500000444.mm","Noncoding",74026319,74028028,30,null,"NA","MTA_TR1500000444.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",3.79,3.92,4.12,4.67,4.42,6.5]
["TC0900001007.rn.1",4.07,4.35,-1.214,"down",0.0464913589705174,0.0473522636245935,"LOC102555685","uncharacterized LOC102555685","chr9","+","mRNARGD7515034_1","Noncoding",89712226,89795453,70,null,"NA","mRNARGD7515034_1","Rat Genome Database","uncharacterized LOC102555685","chr9",100,100,{"$nulls":24},"NonCoding",4.08,4.15,3.97,4.62,4.24,4.18]
["TC0100004739.rn.1",3.83,4.14,-1.24,"down",0.0464935932520331,0.0473522636245935,"NONMMUG037182","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR0700000392.mm","Noncoding",70047840,70049083,30,null,"NA","MTA_TR0700000392.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",3.91,3.94,3.63,4.12,4.01,4.29]
["TC0100006527.rn.1",6.4,7.12,-1.647,"down",0.0465503028341491,0.0473991026692899,"gluflu","Unannotated AceView Transcript","chr1","-","gluflu.aSep08","Noncoding",190517198,190554796,90,null,"NA","gluflu.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"NonCoding",6.48,6.03,6.69,7.05,6.92,7.38]
["TC0100007382.rn.1",3.15,2.78,1.292,"up",0.04657877343059,0.0474195553690898,"NONMMUG020918","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR1900001262.mm","Noncoding",236873177,236876478,30,null,"NA","MTA_TR1900001262.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",3.24,3.05,3.15,2.68,2.65,3.01]
["TC0800002915.rn.1",3.43,3.14,1.223,"up",0.0466118193538805,0.0474448560879092,"NONMMUG043330","Non-coding transcript identified by NONCODE: Linc","chr8","-","MTA_TR0900008577.mm","Noncoding",79806481,79811382,30,null,"NA","MTA_TR0900008577.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",3.35,3.66,3.28,3.03,3.09,3.31]
["TC0100003039.rn.1",3.84,4.22,-1.301,"down",0.0466522511935028,0.0474790019785613,"LOC102555354","uncharacterized LOC102555354","chr1","+","mRNARGD7658497_1","Noncoding",220477974,220493477,40,null,"NA","mRNARGD7658497_1","Rat Genome Database","uncharacterized LOC102555354","chr1",100,100,{"$nulls":24},"NonCoding",4.15,3.67,3.69,4.12,4.04,4.51]
["TC0600000749.rn.1",4.93,5.21,-1.214,"down",0.0467072833907546,0.0475197504849946,"LOC102551416","uncharacterized LOC102551416","chr6","+","mRNARGD7690146_1","Noncoding",72496667,72502328,30,null,"NA","mRNARGD7690146_1","Rat Genome Database","uncharacterized LOC102551416","chr6",100,100,{"$nulls":24},"NonCoding",4.81,4.81,5.16,5.16,5.16,5.3]
["TC1000001983.rn.1",4.1,3.8,1.231,"up",0.0467292202154072,0.0475363424721759,"LOC102546556","uncharacterized LOC102546556","chr10","+","mRNARGD7541901_1","Noncoding",105749285,105768543,30,null,"NA","mRNARGD7541901_1","Rat Genome Database","uncharacterized LOC102546556","chr10",100,100,{"$nulls":24},"NonCoding",4.24,3.84,4.21,3.65,3.95,3.79]
["TC0100003415.rn.1",3.76,3.48,1.214,"up",0.0467432884431619,0.0475424593680055,"gerflo","Unannotated AceView Transcript","chr1","+","gerflo.aSep08","Noncoding",244858852,244860241,45,null,"NA","gerflo.aSep08","Ace View","Unannotated AceView Transcript","chr1",100,100,{"$nulls":24},"NonCoding",3.79,3.93,3.56,3.56,3.32,3.56]
["TC1900000738.rn.1",4.68,4.39,1.223,"up",0.0467658976856105,0.0475589576190431,"1700030M09Rik","RIKEN cDNA 1700030M09 gene","chr19","+","NR_045903","Noncoding",53480009,53481238,30,"8|8",72259,"NR_045903","RefSeq","Mus musculus RIKEN cDNA 1700030M09 gene (1700030M09Rik), long non-coding RNA.","chr19",100,100,null,null,"NR_045903","Mm.396206","testis| adult",{"$nulls":19},"NonCoding",4.73,4.85,4.46,4.42,4.24,4.5]
["TC1400002046.rn.1",5.41,4.77,1.558,"up",0.0467742308273776,0.0475618528050536,"KnowTID_00001222","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14","-","MTA_TR1100008544.mm","Noncoding",78802709,78804403,30,null,"NA","MTA_TR1100008544.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",5.44,5.18,5.62,4.69,4.52,5.1]
["TC1000001803.rn.1",9.13,8.74,1.31,"up",0.0467977458083998,0.0475783473275028,null,null,"chr10","+",null,"Noncoding",95119376,95120430,30,null,"NA","NONRATT010019","NONCODE","Non-coding transcript identified by NONCODE","chr10",100,100,{"$nulls":24},"NonCoding",8.98,9.13,9.27,8.52,8.98,8.73]
["TC1800000795.rn.1",3.53,3.07,1.376,"up",0.0468211519682551,0.0475993580406484,"ENSMUSG00000064527","predicted gene, 26438","chr18","+","MTA_TR1800002305.mm","Noncoding",69588408,69588517,30,null,"NA","MTA_TR1800002305.mm","MTA2Rn6","predicted gene, 26438","chr18",100,100,{"$nulls":24},"NonCoding",3.64,3.68,3.26,2.93,3,3.29]
["TC1500002456.rn.1",4.42,5.83,-2.657,"down",0.0468404575254228,0.0476134114151863,"NONMMUG013923","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15","-","MTA_TR1400008388.mm","Noncoding",110728204,110731076,30,null,"NA","MTA_TR1400008388.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15",100,100,{"$nulls":24},"NonCoding",4.53,4.03,4.69,5.38,5.12,6.98]
["TC1500000200.rn.1",4.57,4.11,1.376,"up",0.046889914729247,0.0476497431123055,"NONMMUG012783","Non-coding transcript identified by NONCODE: Antisense","chr15","+","MTA_TR1400001536.mm","Noncoding",19727991,19730030,30,null,"NA","MTA_TR1400001536.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr15",100,100,{"$nulls":24},"NonCoding",4.33,4.89,4.5,4.35,3.75,4.22]
["TC0100005658.rn.1",7.77,7.22,1.464,"up",0.0469053507697212,0.0476626410190598,"ENSMUSG00000083367","predicted gene 8806, non-POU-domain-containing, octamer binding protein (Nono) pseudogene","chr1","-","MTA_TR0X00007090.mm","Pseudogene",123435723,123437149,30,null,"NA","MTA_TR0X00007090.mm","MTA2Rn6","predicted gene 8806, non-POU-domain-containing, octamer binding protein (Nono) pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",7.9,7.6,7.81,7.32,7.48,6.87]
["TC0200003467.rn.1",5.39,7.15,-3.387,"down",0.0469956835828713,0.0477265138566535,"NONMMUG026320","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2","-","MTA_TR0300005894.mm","Noncoding",119528785,119530908,30,null,"NA","MTA_TR0300005894.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr2",100,100,{"$nulls":24},"NonCoding",5.32,4.91,5.93,6.33,6.57,8.54]
["TC0600002411.rn.1",4.21,3.66,1.464,"up",0.0470093464211396,0.04773551194571,"LOC102556158","uncharacterized LOC102556158","chr6","-","mRNARGD7725903_1","Noncoding",68249360,68268078,40,null,"NA","mRNARGD7725903_1","Rat Genome Database","uncharacterized LOC102556158","chr6",100,100,{"$nulls":24},"NonCoding",4.01,4.64,3.98,3.81,3.58,3.6]
["TC0200001320.rn.1",4.27,3.37,1.866,"up",0.0470127878859713,0.04773551194571,null,null,"chr2","+",null,"Pseudogene",162031880,162032673,30,null,"NA","ENSRNOT00000073607","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:181390843:181391636:1 gene:ENSRNOG00000047954 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",3.94,4.87,4,3.38,2.98,3.76]
["TC1100001558.rn.1",3.88,4.58,-1.625,"down",0.0470163581916883,0.0477363468436389,"NONMMUG016505","Non-coding transcript identified by NONCODE: Linc","chr11","-","MTA_TR1600002302.mm","Noncoding",59836056,59837828,30,null,"NA","MTA_TR1600002302.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",3.6,4.17,3.88,4.4,4.28,5.05]
["TC0300002644.rn.1",3.65,3.97,-1.248,"down",0.0470464550867035,0.0477529016125309,"NONMMUG022247","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200010830.mm","Noncoding",1749823,1752468,30,null,"NA","MTA_TR0200010830.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",3.67,3.54,3.73,3.86,3.86,4.2]
["TC1400000139.rn.1",3.92,4.89,-1.959,"down",0.0470485802343611,0.0477529016125309,"NONMMUG033154","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14","+","MTA_TR0500009998.mm","Noncoding",8225650,8227904,30,null,"NA","MTA_TR0500009998.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr14",100,100,{"$nulls":24},"NonCoding",4.31,3.6,3.86,4.31,4.46,5.89]
["TC0400000806.rn.1",7.32,6.28,2.056,"up",0.0470675923349531,0.0477688213630796,null,null,"chr4","+",null,"Pseudogene",75605666,75605926,30,null,"NA","ENSRNOT00000073110","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:4:140285007:140285267:1 gene:ENSRNOG00000046952 gene_biotype:pseudogene transcript_biotype:pseudogene","chr4",100,100,{"$nulls":24},"Pseudogene",7.12,8.27,6.58,5.72,6.33,6.8]
["TC2000001586.rn.1",6,5.35,1.569,"up",0.0470911182100634,0.0477850796140821,"LOC102546321","uncharacterized LOC102546321","chr20","-","mRNARGD7684376_1","Noncoding",33477961,33478962,30,null,"NA","mRNARGD7684376_1","Rat Genome Database","uncharacterized LOC102546321","chr20",100,100,{"$nulls":24},"NonCoding",5.72,6.53,5.75,5.2,5.2,5.65]
["TC1900001537.rn.1",5.16,4.67,1.404,"up",0.0470918644818071,0.0477850796140821,"NONMMUG041705","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19","-","MTA_TR0800009235.mm","Noncoding",49261150,49266948,30,null,"NA","MTA_TR0800009235.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19",100,100,{"$nulls":24},"NonCoding",4.89,5.29,5.31,4.75,4.34,4.93]
["TC0800001916.rn.1",4.24,4.68,-1.357,"down",0.0471140381470355,0.0478047871876258,"NONMMUG042100","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","-","MTA_TR0900005672.mm","Noncoding",8482307,8483508,30,null,"NA","MTA_TR0900005672.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",4.16,4.2,4.37,4.73,4.67,4.65]
["TC0200004248.rn.1",5.88,6.34,-1.376,"down",0.0471280021759298,0.0478161629459773,null,null,"chr2","-",null,"Pseudogene",198591407,198591655,30,null,"NA","ENSRNOT00000003022","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:218078619:218078867:-1 gene:ENSRNOG00000002223 gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",6.01,5.62,6.02,6.66,6.15,6.22]
["TC0800001804.rn.1",7.97,9.21,-2.362,"down",0.0471643702546718,0.0478390911884797,"LOC102554038","uncharacterized LOC102554038","chr8","+","mRNARGD7565242_1","Noncoding",131101523,131167632,88,null,"NA","mRNARGD7565242_1","Rat Genome Database","uncharacterized LOC102554038","chr8",100,100,{"$nulls":24},"NonCoding",8.15,8.06,7.69,9.06,9.23,9.33]
["TC1000000402.rn.1",15.91,15.15,1.693,"up",0.0472093587257076,0.0478786225802557,null,null,"chr10","+",null,"Pseudogene",27280628,27282442,40,null,"NA","ENSRNOT00000075694","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:10:27126085:27127899:1 gene:ENSRNOG00000050446 gene_biotype:pseudogene transcript_biotype:pseudogene","chr10",100,100,{"$nulls":24},"Pseudogene",15.71,16.7,15.33,15.04,15,15.41]
["TC0900000536.rn.1",6.13,4.68,2.732,"up",0.0472105471950752,0.0478786225802557,"NONMMUG000486","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9","+","MTA_TR0100000883.mm","Noncoding",46974670,46976404,30,null,"NA","MTA_TR0100000883.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr9",100,100,{"$nulls":24},"NonCoding",5.99,6.36,6.03,4.63,4.85,4.56]
["TC0700002373.rn.1",5.57,7.03,-2.751,"down",0.0472412065924652,0.047897449350243,"uc029rau.1","non-coding RNA, oocyte_clustered_small_RNA1888, complete sequence.","chr7","-","MTA_TR1000003195.mm","Noncoding",26453494,26453521,4,null,"NA","MTA_TR1000003195.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA1888, complete sequence.","chr7",100,100,{"$nulls":24},"NonCoding",5.44,4.49,6.77,6.27,7.4,7.41]
["TC0200000754.rn.1",15.68,15.12,1.474,"up",0.0472653200249785,0.0479153211690089,null,null,"chr2","+",null,"Pseudogene",89254154,89259657,30,null,"NA","ENSRNOT00000073391","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:109023823:109029326:1 gene:ENSRNOG00000049504 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",15.48,16.27,15.29,15.03,15.07,15.25]
["TC0300004253.rn.1",4.54,5.03,-1.404,"down",0.047303869029396,0.0479497875304685,"NONMMUG024823","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3","-","MTA_TR0200016698.mm","Noncoding",129266110,129267364,30,null,"NA","MTA_TR0200016698.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr3",100,100,{"$nulls":24},"NonCoding",4.43,4.33,4.87,5.08,4.87,5.15]
["TC0100001321.rn.1",3.64,3.91,-1.206,"down",0.0473350597007322,0.0479730059545757,"NCBI_Gene:100861838","PREDICTED:  uncharacterized LOC100861838 (LOC100861838), miscRNA.","chr1","+","MTA_TR0700002353.mm","Noncoding",92087225,92096205,40,null,"NA","MTA_TR0700002353.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861838 (LOC100861838), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",3.61,3.53,3.77,4.15,3.76,3.81]
["TC0400001598.rn.1",4.39,3.83,1.474,"up",0.0473512412859349,0.0479866059376918,"KnowTID_00007860","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Sense No Exonic, Non-coding transcript identified by NONCODE: Linc","chr4","+","MTA_TR0600004310.mm","Noncoding",146593088,146595806,30,null,"NA","MTA_TR0600004310.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Sense No Exonic, Non-coding transcript identified by NONCODE: Linc","chr4",100,100,{"$nulls":24},"NonCoding",4.06,4.49,4.62,3.54,4.06,3.89]
["TC0600002297.rn.1",6.06,6.71,-1.569,"down",0.0473861466832243,0.0480135764135726,"LOC102547703","uncharacterized LOC102547703","chr6","-","mRNARGD7719083_1","Noncoding",52444371,52459878,140,null,"NA","mRNARGD7719083_1","Rat Genome Database","uncharacterized LOC102547703","chr6",100,100,{"$nulls":24},"NonCoding",6.1,5.87,6.22,6.82,6.74,6.57]
["TC0100006131.rn.1",5.51,4.79,1.647,"up",0.0474167288894061,0.0480361577849113,"NONMMUG038829","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1","-","MTA_TR0700013016.mm","Noncoding",164947245,164951473,30,null,"NA","MTA_TR0700013016.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr1",100,100,{"$nulls":24},"NonCoding",4.97,5.48,6.09,4.54,4.65,5.17]
["TC1100001622.rn.1",5.46,6.71,-2.378,"down",0.0474352639577708,0.0480493305854823,"NONMMUG016475","Non-coding transcript identified by NONCODE: Linc","chr11","-","MTA_TR1600002258.mm","Noncoding",62760521,62762999,30,null,"NA","MTA_TR1600002258.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",5.65,5.04,5.68,6.6,6.42,7.1]
["TC0200002459.rn.1",4.33,4.73,-1.32,"down",0.0474661581085982,0.0480750179292437,null,null,"chr2","+",null,"Pseudogene",264649488,264649999,30,null,"NA","ENSRNOT00000075803","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:283318663:283319174:1 gene:ENSRNOG00000050659 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",3.98,4.42,4.59,4.88,4.6,4.71]
["TC0800001268.rn.1",4.97,4.61,1.283,"up",0.0475034604375737,0.0481099936602783,"LOC102546550","uncharacterized LOC102546550","chr8","+","mRNARGD7536468_1","Noncoding",96688598,96712034,30,null,"NA","mRNARGD7536468_1","Rat Genome Database","uncharacterized LOC102546550","chr8",100,100,{"$nulls":24},"NonCoding",5.19,4.89,4.82,4.39,4.61,4.82]
["TC0700003957.rn.1",5.8,5.27,1.444,"up",0.0475513956692706,0.0481501449781867,"NONMMUG015533","Non-coding transcript identified by NONCODE: Linc","chr7","-","MTA_TR1500007272.mm","Noncoding",143592940,143595471,16,null,"NA","MTA_TR1500007272.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr7",100,100,{"$nulls":24},"NonCoding",5.99,5.93,5.48,5.21,5.3,5.31]
["TC0700000484.rn.1",4.75,5.79,-2.056,"down",0.0476034518988744,0.0481943122239592,"NONMMUG004367","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7","+","MTA_TR1000003568.mm","Noncoding",31387834,31389250,30,null,"NA","MTA_TR1000003568.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr7",100,100,{"$nulls":24},"NonCoding",5.06,4.41,4.79,5.12,5.56,6.69]
["TC1600002085.rn.1",3.13,3.43,-1.231,"down",0.0476089112752944,0.0481943122239592,"NONMMUG039804","Non-coding transcript identified by NONCODE: Antisense","chr16","-","MTA_TR0800000216.mm","Noncoding",86665990,86674653,30,null,"NA","MTA_TR0800000216.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr16",100,100,{"$nulls":24},"NonCoding",3.35,2.92,3.11,3.47,3.58,3.23]
["TC0500001096.rn.1",4.99,4.68,1.24,"up",0.0476163249615079,0.0481990082691192,"KnowTID_00005302","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5","+","MTA_TR0400003151.mm","Noncoding",122909251,122910431,30,null,"NA","MTA_TR0400003151.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr5",100,100,{"$nulls":24},"NonCoding",4.81,5.26,4.91,4.74,4.53,4.77]
["TC1900000914.rn.1",8.62,7.27,2.549,"up",0.0476207320880211,0.0482006605932301,"LOC102550990","uncharacterized LOC102550990","chr19","-","mRNARGD7592743_1","Noncoding",321547,322307,30,null,"NA","mRNARGD7592743_1","Rat Genome Database","uncharacterized LOC102550990","chr19",100,100,{"$nulls":24},"NonCoding",8.18,9.74,7.94,6.97,7.11,7.74]
["TC0800003447.rn.1",4.46,4.16,1.231,"up",0.0476403825922916,0.0482149316016487,"NONMMUG044050","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","-","MTA_TR0900010291.mm","Noncoding",120217525,120218066,30,null,"NA","MTA_TR0900010291.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",4.35,4.66,4.37,4.12,3.97,4.39]
["TC0200004881.rn.1",4.35,4.66,-1.24,"down",0.0477253057999097,0.048281188460208,"KnowTID_00005222","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300010360.mm","Noncoding",254363214,254365068,30,null,"NA","MTA_TR0300010360.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.4,4.45,4.19,4.68,4.45,4.84]
["TC1200000736.rn.1",4.04,3.58,1.376,"up",0.047775086189839,0.0483202924136066,"KnowTID_00005967","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc, cDNA sequence BC051077","chr12","+","MTA_TR0500011003.mm","Noncoding",45002679,45005894,30,null,"NA","MTA_TR0500011003.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc, cDNA sequence BC051077","chr12",100,100,{"$nulls":24},"NonCoding",4.28,3.94,3.89,3.84,3.74,3.16]
["TC1800000743.rn.1",5.2,4.42,1.717,"up",0.0477795262435204,0.0483219696306586,"NONMMUG020200","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18","+","MTA_TR1800002160.mm","Noncoding",63732053,63733806,30,null,"NA","MTA_TR1800002160.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr18",100,100,{"$nulls":24},"NonCoding",4.78,4.96,5.85,4.1,4.37,4.78]
["TC1300000861.rn.1",2.83,3.15,-1.248,"down",0.047826464998167,0.0483512849797135,"KnowTID_00000350","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc,  activated spleen cDNA, RIKEN full-length enriched library, clone:F830103M01 product:unclassifiable, full insert sequence.","chr13","+","MTA_TR0100005522.mm","Noncoding",95609543,95619514,30,null,"NA","MTA_TR0100005522.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc,  activated spleen cDNA, RIKEN full-length enriched library, clone:F830103M01 product:unclassifiable, full insert sequence.","chr13",100,100,{"$nulls":24},"NonCoding",2.73,2.79,2.97,2.96,3.03,3.46]
["TC0X00000816.rn.1",5.98,6.33,-1.275,"down",0.0478320579383221,0.0483512849797135,"LOC302786","similar to Heat shock protein HSP 90-beta (HSP 84)","chrX","+","LOC302786.aSep08-unspliced","Pseudogene",88721314,88723463,30,null,"NA","LOC302786.aSep08-unspliced","Ace View","similar to Heat shock protein HSP 90-beta (HSP 84)","chrX",100,100,{"$nulls":24},"Pseudogene",6.04,6.04,5.86,6.48,6.46,6.04]
["TC1200000549.rn.1",3.44,3.87,-1.347,"down",0.0478513098180056,0.0483610326080801,"NONMMUG033860","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12","+","MTA_TR0500011755.mm","Noncoding",32133141,32134762,30,null,"NA","MTA_TR0500011755.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr12",100,100,{"$nulls":24},"NonCoding",3.42,3.62,3.27,3.61,3.71,4.3]
["TC1400000461.rn.1",6.37,7.41,-2.056,"down",0.0478539295200889,0.0483610326080801,"NONMMUG032700","Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR0500008925.mm","Noncoding",38631198,38638951,30,null,"NA","MTA_TR0500008925.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",6.46,6.13,6.53,7.56,7.46,7.21]
["TC2000000927.rn.1",3.51,3.2,1.24,"up",0.0479317758880195,0.0484251994271715,"LOC102549412","uncharacterized LOC102549412","chr20","-","mRNARGD7580255_1","Noncoding",141313,143235,30,null,"NA","mRNARGD7580255_1","Rat Genome Database","uncharacterized LOC102549412","chr20",100,100,{"$nulls":24},"NonCoding",3.75,3.28,3.5,3.38,3.05,3.17]
["TC0800002158.rn.1",5.69,6.38,-1.613,"down",0.0479448979724711,0.0484271905267935,"ENSMUSG00000085638","predicted gene 15521, Non-coding transcript identified by NONCODE: Sense No Exonic, novel transcript","chr8","-","MTA_TR0900006343.mm","Noncoding",30666378,30668328,30,null,"NA","MTA_TR0900006343.mm","MTA2Rn6","predicted gene 15521, Non-coding transcript identified by NONCODE: Sense No Exonic, novel transcript","chr8",100,100,{"$nulls":24},"NonCoding",5.58,5.84,5.65,6.04,6.19,6.91]
["TC0200001905.rn.1",5.1,5.42,-1.248,"down",0.0479656540524503,0.0484453384816044,"KnowTID_00004831","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","+","MTA_TR0300003654.mm","Noncoding",206699555,206700714,30,null,"NA","MTA_TR0300003654.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",4.9,5.06,5.34,5.51,5.32,5.44]
["TC0800002853.rn.1",3.25,5.04,-3.458,"down",0.0480283954001181,0.0484917905548068,"uc029xen.1","non-coding RNA, oocyte_clustered_small_RNA13646, complete sequence.","chr8","-","MTA_TR0900008333.mm","Noncoding",75586629,75586653,1,null,"NA","MTA_TR0900008333.mm","MTA2Rn6","non-coding RNA, oocyte_clustered_small_RNA13646, complete sequence.","chr8",100,100,{"$nulls":24},"NonCoding",2.34,3.92,3.5,4.55,5.29,5.29]
["TC0800002639.rn.1",7.55,7.15,1.32,"up",0.0480506302549887,0.0485114203277583,"LOC100361518","hypothetical LOC100361518","chr8","-","mRNARGD6646483_1","Pseudogene",62563155,62563729,30,null,"NA","mRNARGD6646483_1","Rat Genome Database","hypothetical LOC100361518","chr8",100,100,{"$nulls":24},"Pseudogene",7.84,7.47,7.34,7.23,7.07,7.15]
["TC1000001087.rn.1",3.86,3.59,1.206,"up",0.0480898400946957,0.0485425424071683,"KnowTID_00001285","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10","+","MTA_TR1100012257.mm","Noncoding",62958256,62959472,30,null,"NA","MTA_TR1100012257.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr10",100,100,{"$nulls":24},"NonCoding",4.04,3.91,3.64,3.71,3.49,3.56]
["TC1000002645.rn.1",5.55,6.35,-1.741,"down",0.0481006158226957,0.0485505983414321,"NONMMUG005913","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1100009802.mm","Noncoding",31287146,31291379,30,null,"NA","MTA_TR1100009802.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",5.43,5.46,5.76,6.03,6.12,6.91]
["TC0800002974.rn.1",3.89,3.61,1.214,"up",0.0481151255030976,0.0485596005760114,"NONMMUG043400","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8","-","MTA_TR0900008727.mm","Noncoding",85028280,85030801,30,null,"NA","MTA_TR0900008727.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr8",100,100,{"$nulls":24},"NonCoding",3.81,3.92,3.94,3.5,3.59,3.74]
["TC0100000782.rn.1",4.36,3.7,1.58,"up",0.0481974276485945,0.0486228884188243,null,null,"chr1","+",null,"Pseudogene",68545496,68546355,30,null,"NA","ENSRNOT00000071347","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:69333169:69334028:1 gene:ENSRNOG00000049412 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",4.08,5.08,3.93,3.87,3.67,3.56]
["TC1500002058.rn.1",5.15,4.88,1.206,"up",0.0482010615605135,0.0486232734761542,"ENSMUSG00000089733","predicted gene 15628, Non-coding transcript identified by NONCODE: Antisense, Novel transcript","chr15","-","MTA_TR1400007497.mm","Noncoding",57175997,57176658,30,null,"NA","MTA_TR1400007497.mm","MTA2Rn6","predicted gene 15628, Non-coding transcript identified by NONCODE: Antisense, Novel transcript","chr15",100,100,{"$nulls":24},"NonCoding",5.36,5.17,4.93,4.9,4.91,4.82]
["TC1900000689.rn.1",4.45,3.76,1.613,"up",0.0482277181354792,0.0486393225575597,"NONMMUG041721","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19","+","MTA_TR0800004623.mm","Noncoding",49828628,49831309,30,null,"NA","MTA_TR0800004623.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr19",100,100,{"$nulls":24},"NonCoding",4.21,4.19,4.95,3.43,3.6,4.26]
["TC0X00000667.rn.1",7.51,8.73,-2.329,"down",0.0483730562914168,0.0487575931784961,"NONMMUG045552","Non-coding transcript identified by NONCODE: Linc","chrX","+","MTA_TR0X00002895.mm","Noncoding",73821761,73822241,30,null,"NA","MTA_TR0X00002895.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chrX",100,100,{"$nulls":24},"NonCoding",7.19,7.54,7.79,8.7,8.59,8.9]
["TC0100000955.rn.1",4.64,4.92,-1.214,"down",0.0483796356886804,0.0487613955061252,"MGI:5011847","PREDICTED:  predicted gene, 19662 (Gm19662), miscRNA.","chr1","+","MTA_TR0700000794.mm","Noncoding",78962799,78968359,30,null,"NA","MTA_TR0700000794.mm","MTA2Rn6","PREDICTED:  predicted gene, 19662 (Gm19662), miscRNA.","chr1",100,100,{"$nulls":24},"NonCoding",4.65,4.64,4.64,4.76,5.18,4.81]
["TC0100001633.rn.1",3.88,3.61,1.206,"up",0.0484239631900803,0.048794484153444,"LOC102555775","uncharacterized LOC102555775","chr1","+","mRNARGD7511552_1","Noncoding",121212184,121217714,50,null,"NA","mRNARGD7511552_1","Rat Genome Database","uncharacterized LOC102555775","chr1",100,100,{"$nulls":24},"NonCoding",3.97,4.06,3.61,3.61,3.61,3.61]
["TC0100001171.rn.1",14.47,13.86,1.526,"up",0.0484257865886845,0.048794484153444,null,null,"chr1","+",null,"Pseudogene",85590934,85595663,30,null,"NA","ENSRNOT00000073601","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:1:86801035:86805764:1 gene:ENSRNOG00000047807 gene_biotype:pseudogene transcript_biotype:pseudogene","chr1",100,100,{"$nulls":24},"Pseudogene",14.19,15.1,14.13,13.87,13.68,14.03]
["TC1700000752.rn.1",6,7.11,-2.158,"down",0.0485049715511319,0.0488565383749688,"KnowTID_00001982","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17","+","MTA_TR1300004078.mm","Noncoding",52251886,52252996,30,null,"NA","MTA_TR1300004078.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr17",100,100,{"$nulls":24},"NonCoding",5.99,6.22,5.78,6.87,6.89,7.57]
["TC1700002031.rn.1",4.04,4.52,-1.395,"down",0.0485672795951938,0.048906503402393,"NONMMUG010271","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17","-","MTA_TR1300003940.mm","Noncoding",65835394,65836807,30,null,"NA","MTA_TR1300003940.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr17",100,100,{"$nulls":24},"NonCoding",4.19,3.74,4.19,4.34,4.29,4.94]
["TC0900001008.rn.1",4.11,3.72,1.31,"up",0.0485902838891464,0.0489226118030697,"KnowTID_00000089","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc, predicted gene, 17751 (Gm17751), transcript variant 2, long non-coding RNA.,  predicted gene, 17751 (Gm17751), transcript variant 2, non-coding RNA.","chr9","+","MTA_TR0100002195.mm","Noncoding",90135904,90145532,60,null,"NA","MTA_TR0100002195.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc, predicted gene, 17751 (Gm17751), transcript variant 2, long non-coding RNA.,  predicted gene, 17751 (Gm17751), transcript variant 2, non-coding RNA.","chr9",100,100,{"$nulls":24},"NonCoding",3.99,4.36,3.99,3.67,3.55,3.94]
["TC1600000335.rn.1",7.68,5.54,4.408,"up",0.048607093554515,0.0489367000194436,"toygar","Chalmel, et. al. AceView Annotation toygar.bSep08","chr16","+","TCONS_00043988","Noncoding",22034725,22036878,59,null,"NA","TCONS_00043988","Chalmel","Chalmel, et. al. AceView Annotation toygar.bSep08","chr16",100,100,{"$nulls":24},"NonCoding",6.93,8.8,7.31,5.26,5.44,5.92]
["TC2000000729.rn.1",5.09,4.58,1.424,"up",0.0486616233481111,0.0489802444767666,null,null,"chr20","+",null,"Pseudogene",34223336,34224404,30,null,"NA","ENSRNOT00000037406","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:20:35982435:35983503:1 gene:ENSRNOG00000026980 gene_biotype:pseudogene transcript_biotype:pseudogene","chr20",100,100,{"$nulls":24},"Pseudogene",5.04,5.12,5.12,4.47,4.29,4.98]
["TC0100002892.rn.1",4.18,3.91,1.206,"up",0.048682203960095,0.0489896052016458,"Mucdhl","Chalmel, et. al. AceView Annotation Mucdhl.cSep08 Testis-expressed Unannotated Transcripts (TUTs)","chr1","+","TCONS_00011971","Noncoding",214255165,214256534,18,null,"NA","TCONS_00011971","Chalmel","Chalmel, et. al. AceView Annotation Mucdhl.cSep08 Testis-expressed Unannotated Transcripts (TUTs)","chr1",100,100,{"$nulls":24},"NonCoding",4.42,4.07,4.04,3.91,3.87,3.96]
["TC0600002953.rn.1",4.88,5.15,-1.206,"down",0.0487600436106913,0.0490508870489529,"LOC100911513","prohibitin-like","chr6","-","mRNARGD6492284_1","Pseudogene",115943230,115944181,30,null,"NA","mRNARGD6492284_1","Rat Genome Database","prohibitin-like","chr6",100,100,{"$nulls":24},"Pseudogene",5,4.74,4.9,5.08,5.35,5.03]
["TC0600000319.rn.1",4.58,4.2,1.301,"up",0.0487931944885328,0.0490757096555094,"Rab10os","RAB10, member RAS oncogene family, opposite strand","chr6","+","NR_015551","Noncoding",27668056,27671053,47,"12 A1.1|12",74173,"NR_015551","RefSeq","Mus musculus RAB10, member RAS oncogene family, opposite strand (Rab10os), long non-coding RNA.","chr6",100,100,"NR_015551","Q8CF44","NR_015551","Mm.309774","blood| brain| connective tissue| embryonic tissue| eye| intestine| kidney| mammary gland| pancreas| skin| spinal cord| spleen| testis| thymus| thyroid| organogenesis| fetus| neonate| juvenile| adult","NR_015551","GO:0008150","biological_process","no biological data available","NR_015551","GO:0005575","cellular_component","no biological data available","NR_015551","GO:0003674","molecular_function","no biological data available",{"$nulls":7},"NonCoding",4.47,4.76,4.5,3.98,4.16,4.47]
["TC0800001457.rn.1",4.41,4.81,-1.32,"down",0.048818618477382,0.0490984380251623,"ENSMUSG00000093590","predicted gene 20643, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr8","+","MTA_TR0900004127.mm","Noncoding",113751339,113753740,30,null,"NA","MTA_TR0900004127.mm","MTA2Rn6","predicted gene 20643, Non-coding transcript identified by NONCODE: Antisense, novel transcript","chr8",100,100,{"$nulls":24},"NonCoding",4.07,4.69,4.48,4.75,4.87,4.81]
["TC0900001644.rn.1",6.88,5.78,2.144,"up",0.0488380159832192,0.0491135567122969,null,null,"chr9","-",null,"Pseudogene",19225392,19225974,30,null,"NA","ENSRNOT00000071949","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:9:18105312:18105894:-1 gene:ENSRNOG00000047660 gene_biotype:pseudogene transcript_biotype:pseudogene","chr9",100,100,{"$nulls":24},"Pseudogene",6.64,7.41,6.59,5.75,5.77,5.82]
["TC1100001446.rn.1",3.71,4.34,-1.548,"down",0.0488670280447717,0.049138590110896,"NONMMUG016770","Non-coding transcript identified by NONCODE: Linc","chr11","-","MTA_TR1600002774.mm","Noncoding",43993383,43994280,30,null,"NA","MTA_TR1600002774.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr11",100,100,{"$nulls":24},"NonCoding",3.51,3.81,3.82,4.12,3.89,5]
["TC0400002507.rn.1",8.4,8.81,-1.329,"down",0.0489251339294259,0.0491913238113131,"MGI:5012361","PREDICTED:  predicted gene, 20176, transcript variant 2 (Gm20176), miscRNA.","chr4","-","MTA_TR0600006316.mm","Noncoding",44970964,44978033,30,null,"NA","MTA_TR0600006316.mm","MTA2Rn6","PREDICTED:  predicted gene, 20176, transcript variant 2 (Gm20176), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",8.42,8.27,8.51,8.87,8.94,8.61]
["TC0200003715.rn.1",4.26,3.91,1.275,"up",0.0490088582471392,0.0492526975187188,"NONMMUG026661","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2","-","MTA_TR0300006521.mm","Noncoding",145693699,145697199,30,null,"NA","MTA_TR0300006521.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al.","chr2",100,100,{"$nulls":24},"NonCoding",4.06,4.62,4.11,3.88,3.84,4.02]
["TC1500001426.rn.1",6.13,5.4,1.659,"up",0.0490212007506697,0.0492566020258688,null,null,"chr15","-",null,"Pseudogene",18995395,18995648,30,null,"NA","ENSRNOT00000031100","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:15:22961799:22962052:-1 gene:ENSRNOG00000022642 gene_biotype:pseudogene transcript_biotype:pseudogene","chr15",100,100,{"$nulls":24},"Pseudogene",6.55,6.3,5.55,5.57,5.01,5.62]
["TC1000002268.rn.1",4.64,6.1,-2.751,"down",0.0490212501193495,0.0492566020258688,"NONMMUG015693","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10","-","MTA_TR1600000243.mm","Noncoding",9032834,9035029,30,null,"NA","MTA_TR1600000243.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr10",100,100,{"$nulls":24},"NonCoding",4.71,4.54,4.68,5.01,5.57,7.72]
["TC0200004884.rn.1",3.64,3.95,-1.24,"down",0.0490335375462129,0.0492660987168294,"KnowTID_00005224","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2","-","MTA_TR0300010365.mm","Noncoding",254378675,254381356,30,null,"NA","MTA_TR0300010365.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr2",100,100,{"$nulls":24},"NonCoding",3.69,3.4,3.83,3.95,3.79,4.12]
["TC0600000822.rn.1",3.28,2.99,1.223,"up",0.0490952510585023,0.0493138433061896,"NONMMUG009076","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6","+","MTA_TR1200001352.mm","Noncoding",78319156,78322334,30,null,"NA","MTA_TR1200001352.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr6",100,100,{"$nulls":24},"NonCoding",3.22,3.21,3.41,3.02,2.84,3.11]
["TC1200001499.rn.1",3.47,2.97,1.414,"up",0.0491167364431264,0.0493286873701266,"NONMMUG046391","Non-coding transcript identified by NONCODE: Linc","chr12","-","MTA_TR0Y00000045.mm","Noncoding",34651177,34652283,30,null,"NA","MTA_TR0Y00000045.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr12",100,100,{"$nulls":24},"NonCoding",3.19,3.69,3.54,2.99,2.77,3.15]
["TC1400000836.rn.1",5.54,5.88,-1.266,"down",0.0491323283553925,0.0493396737114998,"NONMMUG032179","Non-coding transcript identified by NONCODE: Linc","chr14","+","MTA_TR0500007933.mm","Noncoding",82055301,82055998,30,null,"NA","MTA_TR0500007933.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr14",100,100,{"$nulls":24},"NonCoding",5.59,5.64,5.38,6.05,5.59,6.01]
["TC0100001834.rn.1",7.16,8.06,-1.866,"down",0.0491839807090873,0.0493858340403211,"KnowTID_00006585","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1","+","MTA_TR0700004070.mm","Noncoding",141234273,141235249,30,null,"NA","MTA_TR0700004070.mm","MTA2Rn6","Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc","chr1",100,100,{"$nulls":24},"NonCoding",6.89,7.29,7.3,7.93,7.82,8.44]
["TC0100004547.rn.1",5.16,4.45,1.636,"up",0.0492527662930792,0.0494377558810285,"LOC102555009","uncharacterized LOC102555009","chr1","-","mRNARGD7499262_1","Noncoding",55370124,55377096,30,null,"NA","mRNARGD7499262_1","Rat Genome Database","uncharacterized LOC102555009","chr1",100,100,{"$nulls":24},"NonCoding",5.04,5.7,4.74,4.49,4.48,4.37]
["TC0800001808.rn.1",7.78,9.63,-3.605,"down",0.0492613519307027,0.0494406600640303,"LOC102554499","uncharacterized LOC102554499","chr8","+","mRNARGD7665167_1","Noncoding",131294019,131341766,70,null,"NA","mRNARGD7665167_1","Rat Genome Database","uncharacterized LOC102554499","chr8",100,100,{"$nulls":24},"NonCoding",7.83,7.72,7.78,9.6,9.82,9.47]
["TC2000001242.rn.1",4.83,4.5,1.257,"up",0.0493501473256837,0.0495097550790905,"choybor","Unannotated AceView Transcript","chr20","-","choybor.aSep08","Noncoding",9037970,9039426,36,null,"NA","choybor.aSep08","Ace View","Unannotated AceView Transcript","chr20",100,100,{"$nulls":24},"NonCoding",5.05,4.89,4.55,4.56,4.31,4.63]
["TC0100005915.rn.1",4.14,3.65,1.404,"up",0.04936171593879,0.0495185012458259,"NONMMUG038538","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR0700012504.mm","Noncoding",143692962,143695142,30,null,"NA","MTA_TR0700012504.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",3.91,3.96,4.54,3.53,3.78,3.63]
["TC1000002093.rn.1",5.42,5.77,-1.275,"down",0.0494041348005698,0.0495496088695553,"NCBI_Gene:100861787","PREDICTED:  uncharacterized LOC100861787, transcript variant 3 (LOC100861787), miscRNA.","chr10","+","MTA_TR1100007998.mm","Noncoding",109973959,110002049,30,null,"NA","MTA_TR1100007998.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100861787, transcript variant 3 (LOC100861787), miscRNA.","chr10",100,100,{"$nulls":24},"NonCoding",5.44,5.4,5.41,5.63,6.11,5.56]
["TC1000001693.rn.1",7.39,7.07,1.248,"up",0.0494343023442068,0.0495741407470971,"LOC102550197","uncharacterized LOC102550197","chr10","+","mRNARGD7526994_1","Noncoding",90517203,90523810,30,null,"NA","mRNARGD7526994_1","Rat Genome Database","uncharacterized LOC102550197","chr10",100,100,{"$nulls":24},"NonCoding",7.31,7.4,7.46,6.94,7.31,6.95]
["TC0200001321.rn.1",4.51,2.93,2.99,"up",0.0494804361910883,0.0496089744166434,null,null,"chr2","+",null,"Pseudogene",162240080,162240528,30,null,"NA","ENSRNOT00000073022","ENSEMBL","ensembl:novel chromosome:Rnor_5.0:2:181596446:181596894:1 gene:ENSRNOG00000049459 gene_biotype:pseudogene transcript_biotype:pseudogene","chr2",100,100,{"$nulls":24},"Pseudogene",3.88,5.41,4.24,2.98,3.01,2.79]
["TC0500004008.rn.1",4.92,4.23,1.613,"up",0.0494875599077176,0.049613228092397,"LOC102550246","uncharacterized LOC102550246","chr5","-","mRNARGD7688240_1","Noncoding",162805114,162808291,40,null,"NA","mRNARGD7688240_1","Rat Genome Database","uncharacterized LOC102550246","chr5",100,100,{"$nulls":24},"NonCoding",5,4.93,4.82,4.2,4.02,4.48]
["TC1300000556.rn.1",5.41,5.73,-1.248,"down",0.0494922251614846,0.0496142446418413,"MGI:5012103","PREDICTED:  predicted gene, 19918 (Gm19918), miscRNA.","chr13","+","MTA_TR0100004635.mm","Noncoding",74280181,74283865,30,null,"NA","MTA_TR0100004635.mm","MTA2Rn6","PREDICTED:  predicted gene, 19918 (Gm19918), miscRNA.","chr13",100,100,{"$nulls":24},"NonCoding",5.6,5.28,5.35,5.8,5.57,5.82]
["TC0900001884.rn.1",3.28,2.94,1.266,"up",0.0495903188449465,0.0496875715899847,"LOC102546773","uncharacterized LOC102546773","chr9","-","mRNARGD7640826_1","Noncoding",46491344,46507403,30,null,"NA","mRNARGD7640826_1","Rat Genome Database","uncharacterized LOC102546773","chr9",100,100,{"$nulls":24},"NonCoding",3.16,3.56,3.12,2.83,2.98,3.01]
["TC0800000349.rn.1",3.52,3.22,1.231,"up",0.049598532332463,0.0496900689282668,"NONMMUG042421","Non-coding transcript identified by NONCODE: Linc","chr8","+","MTA_TR0900000964.mm","Noncoding",34224214,34295215,52,null,"NA","MTA_TR0900000964.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Linc","chr8",100,100,{"$nulls":24},"NonCoding",3.81,3.44,3.3,3.2,3.28,3.17]
["TC0300003202.rn.1",3.57,3.27,1.231,"up",0.0495985323324632,0.0496900689282668,"LOC102550261","uncharacterized LOC102550261","chr3","-","mRNARGD7565666_1","Noncoding",50483287,50513290,30,null,"NA","mRNARGD7565666_1","Rat Genome Database","uncharacterized LOC102550261","chr3",100,100,{"$nulls":24},"NonCoding",3.77,3.65,3.28,3.32,3.13,3.35]
["TC0200003006.rn.1",4.26,3.88,1.301,"up",0.0496469738553494,0.0497299955507597,"NONMMUG013947","Non-coding transcript identified by NONCODE: Antisense","chr2","-","MTA_TR1500003613.mm","Noncoding",53905573,53906687,30,null,"NA","MTA_TR1500003613.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr2",100,100,{"$nulls":24},"NonCoding",4.26,4.41,4.11,3.79,3.71,4.15]
["TC0800000094.rn.1",4.96,4.49,1.385,"up",0.0497058875214256,0.0497775263538962,"NONMMUG042125","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8","+","MTA_TR0900000314.mm","Noncoding",12219301,12220476,30,null,"NA","MTA_TR0900000314.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr8",100,100,{"$nulls":24},"NonCoding",4.88,4.96,5.03,4.09,4.64,4.74]
["TC0400003501.rn.1",4.81,4.36,1.366,"up",0.0497147956492755,0.0497835772884974,"NCBI_Gene:100862128","PREDICTED:  uncharacterized LOC100862128 (LOC100862128), miscRNA.","chr4","-","MTA_TR0600009422.mm","Noncoding",140905560,140918653,30,null,"NA","MTA_TR0600009422.mm","MTA2Rn6","PREDICTED:  uncharacterized LOC100862128 (LOC100862128), miscRNA.","chr4",100,100,{"$nulls":24},"NonCoding",4.61,4.81,5,4.5,4.25,4.33]
["TC0600000196.rn.1",6.31,4.83,2.789,"up",0.0497491603744525,0.0498036344435578,"LOC102552383","uncharacterized LOC102552383","chr6","+","mRNARGD7583041_1","Noncoding",17273862,17298792,50,null,"NA","mRNARGD7583041_1","Rat Genome Database","uncharacterized LOC102552383","chr6",100,100,{"$nulls":24},"NonCoding",6.43,6.93,5.57,4.59,4.93,4.97]
["TC1500001149.rn.1",3.96,4.72,-1.693,"down",0.0497898484293624,0.0498300084730342,"NONMMUG013836","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15","+","MTA_TR1400004073.mm","Noncoding",105020581,105025039,30,null,"NA","MTA_TR1400004073.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Sense No Exonic","chr15",100,100,{"$nulls":24},"NonCoding",4.26,3.72,3.89,4.34,4.32,5.51]
["TC0100007158.rn.1",3.86,4.13,-1.206,"down",0.049947619731614,0.0499533710839926,"NONMMUG020693","Non-coding transcript identified by NONCODE: Antisense","chr1","-","MTA_TR1900003590.mm","Noncoding",221481667,221484074,30,null,"NA","MTA_TR1900003590.mm","MTA2Rn6","Non-coding transcript identified by NONCODE: Antisense","chr1",100,100,{"$nulls":24},"NonCoding",3.62,3.96,3.99,4.17,3.99,4.22]