Core CRAN/Bioconductor packages used across the analysis scripts:
- AnnotationDbi
- car
- data.table
- edgeR
- EPIC
- ggplot2
- hgu133plus2.db
- jsonlite
- limma
- oncoPredict (official source commit c16c1ffaffdd855f4ada4c83a3948e5c16b618c5)
- patchwork
- pls
- readxl
- ridge

Captured session information from the principal figure and calibration runs is included in this directory.
