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["Table S1.  Results of the tobacco in vitro shoot control (TC) and post-antibiotic treatment (PA) sample microbiome analysis using multivariable region 16S rRNA gene high-throughput sequencing. Cumulative data of six samples obtained using different DNA preparation methods is presented for each primer pair corresponding to five variable regions (V2, V3, V4, V6-7 and V8). "]
[" Phylum"," Class"," Order"," Family"," Genus","Counts"]
[{"$nulls":5},"TC",{"$nulls":5},"PA"]
[{"$nulls":5},"Domains",{"$nulls":4},"Consensus","Domains",{"$nulls":4},"Consensus"]
[{"$nulls":5},"V2","V3","V4","V67","V8",null,"V2","V3","V4","V67","V8"]
[" Actinobacteria"," Actinobacteria"," Acidimicrobiales"," Acidimicrobiaceae"," (family level ID only)",{"$nulls":10},16,16]
[null,null," Actinomycetales"," Actinomycetaceae"," (slash calls)",null,null,1124,194,null,1318]
[{"$nulls":4}," Actinomyces",null,null,16,null,null,16]
[{"$nulls":3}," Cellulomonadaceae"," Cellulomonas",null,null,32,null,null,32]
[{"$nulls":3}," Corynebacteriaceae"," Turicella",null,null,26,10,null,36]
[{"$nulls":3}," Frankiaceae"," (family level ID only)",{"$nulls":4},92,92]
[{"$nulls":4}," (slash calls)",null,12,null,null,10,22]
[{"$nulls":3}," Gordoniaceae"," (slash calls)",null,54,null,null,10,64]
[{"$nulls":4}," Gordonia",null,null,70,44,74,188]
[{"$nulls":3}," Intrasporangiaceae"," Knoellia",{"$nulls":4},10,10]
[{"$nulls":3}," Microbacteriaceae"," (slash calls)",null,328,1022,26,1006,2382,null,754,1392,50,814,3010]
[{"$nulls":4}," Curtobacterium",{"$nulls":6},204,{"$nulls":3},80,284]
[{"$nulls":4}," Gryllotalpicola",null,null,10,null,null,10]
[{"$nulls":4}," Leifsonia",null,null,28,null,36,64]
[{"$nulls":4}," Microbacterium",12,58,86,null,146,302]
[{"$nulls":4}," Phycicola",{"$nulls":4},12,12]
[{"$nulls":3}," Micrococcaceae"," (slash calls)",null,null,36,null,10,46]
[{"$nulls":4}," Arthrobacter",null,10,{"$nulls":3},10]
[{"$nulls":3}," Micromonosporaceae"," (family level ID only)",{"$nulls":3},10,null,10]
[{"$nulls":3}," Mycobacteriaceae"," (family level ID only)",30,52,null,72,1660,1814,{"$nulls":3},765,null,765]
[{"$nulls":4}," Mycobacterium",16662,50,90968,47014,104542,259236,11652,539,80946,33193,73583,199913]
[{"$nulls":3}," Nocardiaceae"," (slash calls)",278,548,2728,1050,2190,6794]
[{"$nulls":4}," Rhodococcus",18,12,40,358,208,636]
[{"$nulls":3}," Nocardioidaceae"," (family level ID only)",40,null,null,10,null,50]
[{"$nulls":4}," (slash calls)",null,280,170,null,480,930]
[{"$nulls":4}," Aeromicrobium",34,42,94,null,348,518]
[{"$nulls":4}," Marmoricola",38,null,102,null,204,344]
[{"$nulls":4}," Nocardioides",292,1344,2454,62,1874,6026]
[{"$nulls":3}," Propionibacteriaceae"," Propionibacterium",{"$nulls":4},166,166,{"$nulls":4},10,10]
[{"$nulls":3}," Pseudonocardiaceae"," (slash calls)",null,310,18,316,900,1544]
[{"$nulls":4}," Pseudonocardia",38,62,{"$nulls":3},100]
[{"$nulls":3}," Sporichthyaceae"," (family level ID only)",12,{"$nulls":4},12]
[{"$nulls":4}," (slash calls)",{"$nulls":4},36,36]
[{"$nulls":4}," Sporichthya",{"$nulls":4},10,10]
[{"$nulls":3}," Streptomycetaceae"," (slash calls)",null,null,10,null,null,10]
[{"$nulls":4}," Streptomyces",{"$nulls":4},14,14]
[{"$nulls":3}," Williamsiaceae"," Williamsia",null,28,32,null,22,82]
[null,null," Solirubrobacterales"," Patulibacteraceae"," Patulibacter",12,318,null,null,26,356]
[" Bacteroidetes"," Bacteroidetes Order II. Incertae sedis"," Bacteroidetes Order II. Incertae sedis"," Rhodothermaceae"," (family level ID only)",{"$nulls":4},108,108]
[null," Cytophagia"," Cytophagales"," Cytophagaceae"," Dyadobacter",null,null,16,null,null,16]
[null," Flavobacteriia"," Flavobacteriales"," Flavobacteriaceae"," Chryseobacterium",null,14,84,496,null,594]
[{"$nulls":4}," Flavobacterium",null,266,{"$nulls":3},266]
[null," Sphingobacteriia"," Sphingobacteriales"," Chitinophagaceae"," Chitinophaga",null,null,760,null,null,760]
[{"$nulls":4}," Flavisolibacter",null,null,120,null,null,120]
[{"$nulls":3}," Sphingobacteriaceae"," (slash calls)",null,14,562,null,null,576]
[{"$nulls":4}," Mucilaginibacter",10,null,304,null,null,314]
[{"$nulls":4}," Pedobacter",null,356,1722,152,null,2230]
[{"$nulls":4}," Sphingobacterium",null,10,40,null,null,50]
[" Firmicutes"," Bacilli"," Bacillales"," Bacillaceae"," (slash calls)",null,334,442,164,null,940,null,22,44,null,null,66]
[{"$nulls":4}," Bacillus",46,22,212,180,114,574]
[{"$nulls":3}," Paenibacillaceae"," (family level ID only)",{"$nulls":4},64,64]
[{"$nulls":4}," (slash calls)",null,20,212,null,82,314]
[{"$nulls":4}," Brevibacillus",null,20,null,30,144,194]
[{"$nulls":4}," Paenibacillus",210,1128,2638,null,3036,7012]
[{"$nulls":3}," Staphylococcaceae"," (slash calls)",null,null,190,null,null,190,null,null,42,null,null,42]
[{"$nulls":4}," Staphylococcus",12,46,22,null,70,150]
[null,null," Lactobacillales"," Streptococcaceae"," (slash calls)",null,48,null,10,null,58]
[{"$nulls":4}," Streptococcus",null,12,26,null,null,38]
[null," Thermolithobacteria"," Thermolithobacterales"," Thermolithobacteraceae"," (family level ID only)",{"$nulls":10},51,51]
[" Planctomycetes"," Planctomycetia"," Planctomycetales"," Planctomycetaceae"," (family level ID only)",{"$nulls":3},76,null,76]
[" Proteobacteria"," Alphaproteobacteria"," Caulobacterales"," Caulobacteraceae"," (family level ID only)",18,null,null,12,12,42,11,{"$nulls":4},11]
[{"$nulls":4}," (slash calls)",null,14,null,null,10,24]
[{"$nulls":4}," Caulobacter",{"$nulls":3},414,316,730,{"$nulls":3},70,125,195]
[null,null," Kopriimonadales"," Kopriimonadaceae"," (family level ID only)",{"$nulls":10},13,13]
[null,null," Rhizobiales"," Beijerinckiaceae"," (slash calls)",{"$nulls":3},12,null,12]
[{"$nulls":3}," Bradyrhizobiaceae"," (slash calls)",56,728,902,542,688,2916,null,48,129,30,35,242]
[{"$nulls":4}," Afipia",null,null,160,null,146,306]
[{"$nulls":4}," Bosea",null,null,30,42,146,218]
[{"$nulls":4}," Bradyrhizobium",10,null,130,58,null,198,null,null,83,null,null,83]
[{"$nulls":3}," Hyphomicrobiaceae"," (family level ID only)",{"$nulls":3},56,48,104]
[{"$nulls":4}," Devosia",null,60,166,38,180,444]
[{"$nulls":4}," Hyphomicrobium",null,null,28,null,16,44]
[{"$nulls":4}," Rhizomicrobium",{"$nulls":4},26,26]
[{"$nulls":3}," Methylobacteriaceae"," Methylobacterium",64,454,934,206,992,2650]
[{"$nulls":3}," Methylocystaceae"," (slash calls)",null,98,{"$nulls":3},98]
[{"$nulls":3}," Phyllobacteriaceae"," (slash calls)",null,154,20,14,36,224]
[{"$nulls":4}," Mesorhizobium",24,null,null,96,352,472]
[{"$nulls":3}," Rhizobiaceae"," (slash calls)",null,214,420,36,76,746,null,null,10,null,12,22]
[{"$nulls":4}," Kaistia",0,0,456,156,420,1032]
[{"$nulls":3}," Rhodobiaceae"," (family level ID only)",{"$nulls":4},34,34]
[{"$nulls":4}," Parvibaculum",{"$nulls":4},10,10]
[{"$nulls":3}," unclassified Rhizobiales"," Vasilyevaea",null,null,14,null,null,14]
[{"$nulls":3}," Xanthobacteraceae"," Labrys",null,10,{"$nulls":3},10]
[null,null," Rhodobacterales"," Rhodobacteraceae"," Paracoccus",{"$nulls":8},20,null,null,20]
[null,null," Rhodospirillales"," Rhodospirillaceae"," (family level ID only)",{"$nulls":9},78,null,78]
[null,null," Sphingomonadales"," Erythrobacteraceae"," (slash calls)",null,null,18,null,null,18]
[{"$nulls":3}," Sphingomonadaceae"," (family level ID only)",{"$nulls":3},16,null,16,{"$nulls":4},43,43]
[{"$nulls":4}," (slash calls)",86,420,1296,302,832,2936]
[{"$nulls":4}," Novosphingobium",{"$nulls":3},132,390,522]
[{"$nulls":4}," Sphingomonas",null,null,260,82,154,496]
[{"$nulls":4}," Sphingopyxis",null,18,{"$nulls":3},18]
[null," Betaproteobacteria"," Burkholderiales"," Alcaligenaceae"," (slash calls)",76,852,84,null,1988,3000]
[{"$nulls":4}," Advenella",null,null,16,null,null,16]
[{"$nulls":4}," Bordetella",{"$nulls":4},24,24]
[{"$nulls":4}," Candidimonas",120,null,18,null,null,138]
[{"$nulls":4}," Pigmentiphaga",{"$nulls":4},14,14]
[{"$nulls":4}," Pusillimonas",null,null,2062,null,null,2062]
[{"$nulls":3}," Burkholderiaceae"," (slash calls)",20,22,76,null,null,118,null,null,64,null,null,64]
[{"$nulls":4}," Burkholderia",null,null,14,null,null,14]
[{"$nulls":3}," Oxalobacteraceae"," (slash calls)",null,null,66,null,64,130]
[null,null," Methylophilales"," Methylophilaceae"," Methylophilus",null,326,{"$nulls":3},326]
[{"$nulls":4}," Methylovorus",{"$nulls":4},696,696]
[null,null," Neisseriales"," Neisseriaceae"," (family level ID only)",{"$nulls":4},30,30]
[null," Deltaproteobacteria"," Desulfovibrionales"," Desulfovibrionaceae"," (family level ID only)",{"$nulls":3},46,null,46,{"$nulls":3},72,null,72]
[null," Gammaproteobacteria"," Enterobacteriales"," Enterobacteriaceae"," (slash calls)",248,208,750,130,616,1952,null,null,19,null,null,19]
[{"$nulls":4}," Erwinia",null,30,null,28,44,102]
[{"$nulls":4}," Escherichia",{"$nulls":4},10,10]
[{"$nulls":4}," Pantoea",{"$nulls":3},28,172,200]
[null,null," Methylococcales"," Methylococcaceae"," (family level ID only)",{"$nulls":9},33,null,33]
[null,null," Oceanospirillales"," Halomonadaceae"," Candidatus Portiera",null,null,30,null,null,30]
[null,null," Pseudomonadales"," Moraxellaceae"," (slash calls)",null,null,152,null,40,192]
[{"$nulls":4}," Acinetobacter",{"$nulls":4},28,28]
[{"$nulls":3}," Pseudomonadaceae"," (slash calls)",44,48,76,120,250,538]
[{"$nulls":4}," Pseudomonas",null,null,226,null,198,424]
[null,null," Xanthomonadales"," Sinobacteraceae"," Solimonas",{"$nulls":4},538,538,{"$nulls":4},22,22]
[{"$nulls":3}," Xanthomonadaceae"," (slash calls)",null,null,92,null,116,208]
[{"$nulls":4}," Rhodanobacter",{"$nulls":4},12,12]
[" Verrucomicrobia"," Verrucomicrobiae"," Verrucomicrobiales"," Verrucomicrobiaceae"," (family level ID only)",{"$nulls":3},26,null,26]