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["Additional file 5. Functional classification of genes in the profiles of figure 5."]
["Category ID","Category Name","Genes Enriched","p-value"]
["GO:2001057","reactive nitrogen species metabolic process",9.4,{"v":1.8e-10,"d":"1.80E-10"}]
["GO:0042126","nitrate metabolic process",7.5,{"v":2.1e-08,"d":"2.10E-08"}]
["GO:0042128","nitrate assimilation",7.5,{"v":2.1e-08,"d":"2.10E-08"}]
["GO:0016661","oxidoreductase activity, acting on other nitrogenous compounds as donors",7.5,{"v":2.1e-08,"d":"2.10E-08"}]
["GO:0009061","anaerobic respiration",10.5,{"v":2.4e-08,"d":"2.40E-08"}]
["GO:0071941","nitrogen cycle metabolic process",7.4,{"v":1e-07,"d":"1.00E-07"}]
["GO:0045333","cellular respiration",9.1,{"v":2.7e-05,"d":"2.70E-05"}]
["GO:0009055","electron transfer activity",7.7,{"v":7e-05,"d":"7.00E-05"}]
["GO:0022900","electron transport chain",8.3,{"v":7.5e-05,"d":"7.50E-05"}]
["GO:0015980","energy derivation by oxidation of organic compounds",8.7,{"v":0.00011,"d":"1.10E-04"}]
["GO:0006091","generation of precursor metabolites and energy",8.6,{"v":0.00087,"d":"8.70E-04"}]
["GO:1990204","oxidoreductase complex",5.3,{"v":0.0013,"d":"1.30E-03"}]
["GO:0051536","iron-sulfur cluster binding",7.1,{"v":0.0017,"d":"1.70E-03"}]
["GO:0051540","metal cluster binding",7,{"v":0.0018,"d":"1.80E-03"}]
["GO:0051539","4 iron, 4 sulfur cluster binding",6,{"v":0.0031,"d":"3.10E-03"}]
["GO:0020037","heme binding",4,{"v":0.0031,"d":"3.10E-03"}]
["GO:0046906","tetrapyrrole binding",3.9,{"v":0.0052,"d":"5.20E-03"}]
["GO:0018193","peptidyl-amino acid modification",4,0.02]

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["Category ID","Category Name","Genes Enriched","p-value"]
["GO:0010035","response to inorganic substance",5.9,{"v":0.00099,"d":"9.90E-04"}]
["GO:0016651","oxidoreductase activity, acting on NAD(P)H",3.8,{"v":0.0058,"d":"5.80E-03"}]
["GO:0016020","membrane",12,{"v":0.0066,"d":"6.60E-03"}]
["GO:0015294","solute:cation symporter activity",3.8,{"v":0.0073,"d":"7.30E-03"}]
["GO:0009066","aspartate family amino acid metabolic process",3.6,0.01]
["GO:0070887","cellular response to chemical stimulus",4.9,0.01]
["GO:0015077","monovalent inorganic cation transmembrane transporter activity",4,0.01]
["GO:0015078","proton transmembrane transporter activity",3.4,0.02]
["GO:0015293","symporter activity",3.3,0.02]
["GO:0015672","monovalent inorganic cation transport",3.9,0.02]
["GO:0043565","sequence-specific DNA binding",5,0.02]
["GO:0009103","lipopolysaccharide biosynthetic process",3.3,0.03]
["GO:0008653","lipopolysaccharide metabolic process",3.2,0.03]
["GO:0016051","carbohydrate biosynthetic process",3.7,0.04]
["GO:0033692","cellular polysaccharide biosynthetic process",3.4,0.04]
["GO:1903509","liposaccharide metabolic process",3.1,0.04]
["GO:0001067","regulatory region nucleic acid binding",3.4,0.04]
["GO:0000976","transcription regulatory region sequence-specific DNA binding",3.4,0.04]

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["Category ID","Category Name","Genes Enriched","p-value"]
["GO:2000112","regulation of cellular macromolecule biosynthetic process",10.6,{"v":0.00083,"d":"8.30E-04"}]
["GO:0010468","regulation of gene expression",10.2,{"v":0.0014,"d":"1.40E-03"}]
["GO:0010556","regulation of macromolecule biosynthetic process",10.2,{"v":0.0015,"d":"1.50E-03"}]
["GO:0031326","regulation of cellular biosynthetic process",10.1,{"v":0.0016,"d":"1.60E-03"}]
["GO:0009889","regulation of biosynthetic process",10,{"v":0.0018,"d":"1.80E-03"}]
["GO:0140110","transcription regulator activity",8.1,{"v":0.002,"d":"2.00E-03"}]
["GO:0006355","regulation of transcription, DNA-templated",8.9,{"v":0.0026,"d":"2.60E-03"}]
["GO:0140096","catalytic activity, acting on a protein",7.1,{"v":0.0032,"d":"3.20E-03"}]
["GO:1903506","regulation of nucleic acid-templated transcription",8.7,{"v":0.0032,"d":"3.20E-03"}]
["GO:0051171","regulation of nitrogen compound metabolic process",9.4,{"v":0.0035,"d":"3.50E-03"}]
["GO:0050794","regulation of cellular process",10.3,{"v":0.0036,"d":"3.60E-03"}]
["GO:0050789","regulation of biological process",10.6,{"v":0.0041,"d":"4.10E-03"}]
["GO:0080090","regulation of primary metabolic process",9.2,{"v":0.0043,"d":"4.30E-03"}]
["GO:0031323","regulation of cellular metabolic process",9.2,{"v":0.0046,"d":"4.60E-03"}]
["GO:2001141","regulation of RNA biosynthetic process",8.4,{"v":0.0046,"d":"4.60E-03"}]
["GO:0060255","regulation of macromolecule metabolic process",8.9,{"v":0.0059,"d":"5.90E-03"}]
["GO:0006351","transcription, DNA-templated",8.1,{"v":0.0064,"d":"6.40E-03"}]
["GO:0003700","DNA-binding transcription factor activity",6.6,{"v":0.0067,"d":"6.70E-03"}]
["GO:0051252","regulation of RNA metabolic process",8.1,{"v":0.0067,"d":"6.70E-03"}]
["GO:0097659","nucleic acid-templated transcription",8,{"v":0.0075,"d":"7.50E-03"}]
["GO:0008610","lipid biosynthetic process",5.5,{"v":0.0078,"d":"7.80E-03"}]
["GO:0043170","macromolecule metabolic process",12,{"v":0.0084,"d":"8.40E-03"}]
["GO:0044260","cellular macromolecule metabolic process",11.5,{"v":0.0086,"d":"8.60E-03"}]
["GO:0019222","regulation of metabolic process",8.5,{"v":0.0087,"d":"8.70E-03"}]
["GO:0019219","regulation of nucleobase-containing compound metabolic process",7.8,{"v":0.0089,"d":"8.90E-03"}]
["GO:0032774","RNA biosynthetic process",7.8,{"v":0.0094,"d":"9.40E-03"}]
["GO:0090609","single-species submerged biofilm formation",3.7,0.01]
["GO:0090605","submerged biofilm formation",3.5,0.01]
["GO:0044249","cellular biosynthetic process",10.8,0.01]
["GO:0019438","aromatic compound biosynthetic process",8.7,0.01]
["GO:0034645","cellular macromolecule biosynthetic process",9.3,0.01]
["GO:0010629","negative regulation of gene expression",5.1,0.01]
["GO:0032993","protein-DNA complex",3.5,0.02]
["GO:0009058","biosynthetic process",10,0.02]
["GO:0044255","cellular lipid metabolic process",5.4,0.02]
["GO:1990837","sequence-specific double-stranded DNA binding",4.1,0.02]
["GO:0001067","regulatory region nucleic acid binding",4.2,0.02]
["GO:0000976","transcription regulatory region sequence-specific DNA binding",4.2,0.02]
["GO:1901576","organic substance biosynthetic process",10.3,0.02]
["GO:0034654","nucleobase-containing compound biosynthetic process",7.9,0.02]
["GO:0009059","macromolecule biosynthetic process",9.1,0.02]
["GO:0008233","peptidase activity",4.3,0.02]
["GO:1903509","liposaccharide metabolic process",3.9,0.02]
["GO:0006629","lipid metabolic process",5.2,0.02]
["GO:0048519","negative regulation of biological process",5.6,0.02]
["GO:0045892","negative regulation of transcription, DNA-templated",4.1,0.02]
["GO:0044271","cellular nitrogen compound biosynthetic process",8.2,0.03]
["GO:0043565","sequence-specific DNA binding",4.6,0.03]
["GO:0016853","isomerase activity",4,0.03]
["GO:0009890","negative regulation of biosynthetic process",4.2,0.03]
["GO:0031327","negative regulation of cellular biosynthetic process",4.2,0.03]
["GO:0009892","negative regulation of metabolic process",4.5,0.03]
["GO:1901362","organic cyclic compound biosynthetic process",7.9,0.03]
["GO:0006508","proteolysis",4,0.03]
["GO:2000113","negative regulation of cellular macromolecule biosynthetic process",4.4,0.03]
["GO:0048523","negative regulation of cellular process",5,0.03]
["GO:0010605","negative regulation of macromolecule metabolic process",4.6,0.03]
["GO:0010558","negative regulation of macromolecule biosynthetic process",4.3,0.03]
["GO:1902679","negative regulation of RNA biosynthetic process",3.9,0.03]
["GO:1903507","negative regulation of nucleic acid-templated transcription",3.9,0.03]
["GO:0018130","heterocycle biosynthetic process",7.2,0.04]
["GO:0022853","active ion transmembrane transporter activity",3.7,0.04]
["GO:0003677","DNA binding",6.6,0.04]
["GO:0003690","double-stranded DNA binding",3.8,0.04]
["GO:0051172","negative regulation of nitrogen compound metabolic process",4,0.04]
["GO:0045934","negative regulation of nucleobase-containing compound metabolic process",3.7,0.04]
["GO:0019538","protein metabolic process",6,0.04]
["GO:0051253","negative regulation of RNA metabolic process",3.8,0.04]

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["Category ID","Category Name","Genes Enriched","p-value"]
["GO:0043709","cell adhesion involved in single-species biofilm formation",4.9,{"v":0.00069,"d":"6.90E-04"}]
["GO:0043708","cell adhesion involved in biofilm formation",4.8,{"v":0.0013,"d":"1.30E-03"}]
["GO:0031589","cell-substrate adhesion",4.7,{"v":0.0016,"d":"1.60E-03"}]
["GO:0090609","single-species submerged biofilm formation",4.5,{"v":0.0031,"d":"3.10E-03"}]
["GO:0007155","cell adhesion",4.5,{"v":0.004,"d":"4.00E-03"}]
["GO:0090605","submerged biofilm formation",4.4,{"v":0.0047,"d":"4.70E-03"}]
["GO:0044010","single-species biofilm formation",3.7,0.02]
["GO:0044283","small molecule biosynthetic process",6.6,0.02]
["GO:0006631","fatty acid metabolic process",3.2,0.03]
["GO:0042995","cell projection",3.3,0.03]

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["Category ID","Category Name","Genes Enriched","p-value"]
["GO:0034654","nucleobase-containing compound biosynthetic process",7.5,0.01]
["GO:0019438","aromatic compound biosynthetic process",6.7,0.03]
["GO:0019219","regulation of nucleobase-containing compound metabolic process",5.6,0.03]
["GO:1903506","regulation of nucleic acid-templated transcription",5.3,0.03]
["GO:0006355","regulation of transcription, DNA-templated",5.5,0.03]
["GO:0032774","RNA biosynthetic process",5.6,0.03]
["GO:0018130","heterocycle biosynthetic process",6.3,0.04]
["GO:2001141","regulation of RNA biosynthetic process",5.1,0.04]
["GO:0003690","double-stranded DNA binding",3.4,0.04]