VCF Comparison Report

Haplogroup & Variant Analysis

Haplogroup Comparison

Sample	Contamination Status	Contamination Level	Distance	Sample Coverage	Overall Homoplasmies	Overall Heteroplasmies	Major Heteroplasmy Level	Minor Heteroplasmy Level	Major Haplogroup	Major Haplogroup Quality	Minor Haplogroup	Minor Haplogroup Quality	Major Homoplasmies Count	Minor Homoplasmies Count	Major Heteroplasmies Count	Minor Heteroplasmies Count	Clusters
240923_M3243-1	NO	ND	0	0	27	29	0,000	0,000	U2e1a1a	0,843	U2e1a1a	0,914	25	25	0	0
M3243-1_S5_L001_interleaved.bam	NO	ND	0	14195	38	8	0,000	0,000	U2e1a1a	0,977	U2e1a1a	0,981	36	36	0	0

LR/Nanomito-only Variants

Variants found only in LR/Nanomito sequencing

CHROM	POS	ID	REF	ALT	HPL	MitoMap_AC	MitoMap_Disease	MitoMap_DiseaseStatus	MitoMap_HGFL	MitoMap_PubmedIDs	MitoMap_aachange	MitoMap_heteroplasmy	MitoMap_homoplasmy	gnomAD_mitotip_score	gnomAD_AC_het	gnomAD_AC_hom	gnomAD_AF_het	gnomAD_AF_hom	gnomAD_AN	gnomAD_filters	FILTER	ADF	ADR	QUAL	DP	END
chrM	71	rs869183622	GTA	GTG,G	0.96802,0.03198	46698,0	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:77/100.00\|A17:46/100.00\|A2:1088/93.07\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1054/95.38\|B4:3091/99.77\|B5:831/99.88\|B6:70/98.59\|C1:937/98.63\|C4:785/98.99\|C5:211/98.60\|C7:209/99.52\|D1:476/95.97\|D2:99/98.02\|D3:45/100.00\|D4:1646/97.40\|D5:424/99.30\|D6:34/100.00\|E1:381/99.74\|E2:88/100.00\|F1:1404/99.57\|F2:183/98.92\|F3:318/100.00\|F4:107/99.07\|G1:204/100.00\|G2:346/99.71\|G3:60/98.36\|H32:16/100.00\|HV2:60/100.00\|I1:319/98.15\|I2:229/96.22\|I3:78/98.73\|I4:148/99.33\|I5:110/98.21\|J1:2213/98.22\|J2:799/99.01\|K1:1823/97.28\|K2:359/95.48\|L0:935/55.56\|L1:928/95.67\|L2:1449/96.47\|L3:2286/97.11\|L4:107/98.17\|L5:36/94.74\|L6:12/100.00\|M1:253/98.44\|M10:76/100.00\|M11:39/97.50\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:29/100.00\|M2:253/99.61\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M23:233/100.00\|M24:60/98.36\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:191/99.48\|M30:139/100.00\|M31:29/100.00\|M32:161/100.00\|M33:90/100.00\|M34:11/100.00\|M35:107/98.17\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:43/100.00\|M4:31/100.00\|M40:30/100.00\|M41:12/100.00\|M42:58/96.67\|M44:12/100.00\|M45:29/96.67\|M46:12/100.00\|M49:42/100.00\|M5:215/98.62\|M50:20/95.24\|M51:71/98.61\|M52:49/100.00\|M53:27/100.00\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:35/100.00\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:46/97.87\|M66:11/91.67\|M68:35/100.00\|M69:15/100.00\|M7:1604/99.57\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:106/98.15\|M9:353/99.44\|M91:24/100.00\|N1:348/98.58\|N10:25/80.65\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:390/99.74\|P1:202/100.00\|P2:51/98.08\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:13/100.00\|Q1:350/99.15\|Q2:46/100.00\|Q3:38/92.68\|R1:72/98.63\|R11:58/98.31\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:104/100.00\|R5:57/100.00\|R6:32/100.00\|R7:26/96.30\|R8:103/100.00\|R9:239/99.58\|S1:22/100.00\|S2:21/100.00\|T1:807/97.11\|T2:2086/97.43\|U1:208/98.58\|U2:535/97.63\|U3:415/98.57\|U4:750/96.15\|U5:2417/96.33\|U6:569/99.30\|U7:471/99.79\|U8:166/96.51\|U9:17/94.44\|W1:229/96.22\|W3:142/95.95\|W4:44/97.78\|W5:67/95.71\|W6:109/99.09\|X1:16/100.00\|X2:623/97.65\|X3:20/100.00\|Y1:150/100.00\|Y2:63/100.00\|Z1:110/100.00\|Z3:120/99.17\|Z4:37/100.00,.	.	.	.	.	.	6	40199	0.00010683	0.715743	56164	npg	PASS	0,245,2	0,159,17	40	423	.
chrM	217	rs41531144	T	C,A	0.99772,0.00228	512,.	.	.	U2:359/65.51,.	.	.	.	.	.	9	874	0.000159555	0.0154945	56407	.	PASS	0,241,4	1,184,1	40	446	.
chrM	310	rs1556422421	TC	TCC,T,CC	0.78362,0.05921,0.01186	.,.,24726	Possible-protective-factor-for-normal-tension-glaucoma	Reported	.,.,A13:14/53.85\|A2:727/62.19\|A5:77/66.96\|B2:764/69.14\|C1:616/64.84\|D1:251/50.60\|D2:58/57.43\|H10:151/63.71\|H101:7/53.85\|H13:240/64.69\|H14:55/53.40\|H15:76/69.09\|H2:502/55.29\|H31:25/50.00\|H35:22/75.86\|H40:16/69.57\|H41:28/80.00\|H44:15/60.00\|H49:37/74.00\|H52:11/50.00\|H56:18/52.94\|H6:277/57.95\|H73:7/58.33\|H79:10/62.50\|H8:37/53.62\|HV1:89/61.81\|HV13:11/61.11\|HV14:51/86.44\|HV16:15/83.33\|HV18:10/83.33\|HV2:37/61.67\|HV4:79/77.45\|HV6:17/68.00\|I3:57/72.15\|L6:7/58.33\|M1:139/54.09\|M11:26/65.00\|M12:74/51.03\|M21:61/58.10\|M22:6/50.00\|M3:97/50.52\|M33:51/56.67\|M34:7/63.64\|M36:33/86.84\|M38:18/66.67\|M39:32/74.42\|M44:8/66.67\|M45:18/60.00\|M46:10/83.33\|M5:111/50.92\|M50:16/76.19\|M53:23/85.19\|M54:7/58.33\|M57:15/88.24\|M61:14/53.85\|M62:19/70.37\|M72:13/59.09\|M73:24/58.54\|M76:17/50.00\|M8:57/52.78\|M91:16/66.67\|N2:7/63.64\|N7:10/66.67\|N9:231/59.08\|P9:11/84.62\|R0:178/58.36\|R1:42/57.53\|R2:52/66.67\|R21:6/50.00\|R8:71/68.93\|T1:425/51.14\|U1:106/50.24\|U2:296/54.01\|U7:260/55.08\|U8:102/59.30\|V1:99/73.33\|V10:23/82.14\|V13:11/91.67\|V15:11/68.75\|V18:10/66.67\|V22:19/95.00\|V3:34/75.56\|V5:11/91.67\|V7:71/66.36\|V8:12/75.00\|V9:16/50.00\|W3:96/64.86\|W6:63/57.27\|Y1:104/69.33\|Y2:38/60.32\|Z1:68/61.82\|Z3:78/64.46	30312593	.,.,noncoding	.	.	.	26	375	0.00367232	0.0529661	7080	artifact_prone_site	PASS	49,149,27,5	11,167,1,4	40	413	.
chrM	513	.	G	GCA	0.96659	.	.	.	.	.	.	.	.	.	431	1969	0.00780232	0.0356445	55240	.	PASS	8,230	8,176	40	437	.
chrM	2075	.	T	A	0.01282	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	PASS	246,4	184,2	40	446	.
chrM	2475	.	T	C	0.07094	.	.	.	.	.	.	.	.	.	0	0	0	0	56431	npg	PASS	219,22	166,9	40	446	.
chrM	2623	.	A	G	0.01354	9	.	.	.	.	.	.	.	.	15	0	0.000267771	0	56018	.	PASS	228,3	177,3	40	440	.
chrM	2973	.	T	C	0.0258	.	.	.	.	.	.	.	.	.	1	0	1.7723e-05	0	56424	.	PASS	241,6	183,6	40	446	.
chrM	3735	rs1603219107	A	G	0.01293	2	.	.	.	.	.	.	.	.	2	7	3.54396e-05	0.000124039	56434	.	PASS	243,5	183,1	40	446	.
chrM	3776	rs1603219138	G	A	0.02028	3	.	.	.	.	.	.	.	.	0	6	0	0.000106338	56424	.	PASS	240,6	176,3	40	446	.
chrM	5231	rs371345850	GC	G,AC	0.04174,0.01855	.,1275	.	.	.,N9:335/85.68	.	.	.	.	.	8	910	0.000141786	0.0161282	56423	.	PASS	212,21,3	180,1,6	40	423	.
chrM	6787	.	T	C	0.01065	0	.	.	.	.	.	.	.	.	0	0	0	0	56428	npg	PASS	235,3	178,2	37	446	.
chrM	6991	.	T	C	0.01346	.	.	.	.	.	.	.	.	.	0	0	0	0	56433	npg	PASS	243,6	182,1	40	446	.
chrM	11225	.	G	A	0.01258	.	.	.	.	.	.	.	.	.	0	0	0	0	56420	npg	PASS	224,4	176,2	40	446	.
chrM	16042	rs1556424727	G	A	0.01771	101	.	.	.	.	.	.	.	.	2	25	3.54428e-05	0.000443035	56429	.	PASS	230,5	177,4	40	446	.
chrM	16147	rs2854125	C	T	0.00831	209	.	.	.	.	.	.	.	.	8	110	0.000141784	0.00194952	56424	.	PASS	244,3	184,1	30	446	.
chrM	16182	rs1556424784;rs879044186	A	AC,C,ACC	0.28517,0.1307,0.07868	15,3647,1	.	.	.,B4:1858/59.97\|B6:37/52.11\|R11:41/69.49,.	.	.	.	.	.	3640	7	0.0651722	0.000125331	55852	artifact_prone_site	PASS	145,44,31,18	65,78,24,19	40	432	.
chrM	16188	rs28693675	CT	CC,C	0.95106,0.04894	15259,364	Diabetes-/-Cardiomyopathy-/cancer-risk-/-mtDNA-copy-nbr-/-Metabolic-Syndrome-/-Melanoma-patients	Reported	A12:12/92.31\|B2:1058/95.75\|B4:2725/87.96\|B5:735/88.34\|B6:71/100.00\|D5:350/81.97\|D6:22/64.71\|H55:22/75.86\|HV18:12/100.00\|L0:1502/89.25\|L1:902/92.99\|L5:21/55.26\|M1:204/79.38\|M29:15/100.00\|M45:21/70.00\|M53:25/92.59\|M54:9/75.00\|M76:34/100.00\|N10:25/80.65\|N3:22/100.00\|R11:57/96.61\|T1:746/89.77\|U1:151/71.56\|U2:370/67.52\|V9:17/53.12\|X1:15/93.75\|X2:568/89.03\|X3:19/95.00\|Y1:103/68.67,.	9820026	noncoding,.	-,.	+,.	.	220	13910	0.00393124	0.248562	55962	.	PASS	0,223,24	0,185,2	40	434	.

SR/Mitopore-only Variants

Variants found only in SR/Mitopore sequencing

CHROM	POS	ID	REF	ALT	HPL	MitoMap_AC	MitoMap_AF	MitoMap_Disease	MitoMap_DiseaseStatus	MitoMap_HGFL	MitoMap_PubmedIDs	MitoMap_aachange	MitoMap_heteroplasmy	MitoMap_homoplasmy	gnomAD_mitotip_score	gnomAD_AC_het	gnomAD_AC_hom	gnomAD_AF_het	gnomAD_AF_hom	gnomAD_AN	gnomAD_filters	FILTER	QUAL	DP
chrM	73	rs869183622	A	G	0.997	46698	0.997	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:77/100.00\|A17:46/100.00\|A2:1088/93.07\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1054/95.38\|B4:3091/99.77\|B5:831/99.88\|B6:70/98.59\|C1:937/98.63\|C4:785/98.99\|C5:211/98.60\|C7:209/99.52\|D1:476/95.97\|D2:99/98.02\|D3:45/100.00\|D4:1646/97.40\|D5:424/99.30\|D6:34/100.00\|E1:381/99.74\|E2:88/100.00\|F1:1404/99.57\|F2:183/98.92\|F3:318/100.00\|F4:107/99.07\|G1:204/100.00\|G2:346/99.71\|G3:60/98.36\|H32:16/100.00\|HV2:60/100.00\|I1:319/98.15\|I2:229/96.22\|I3:78/98.73\|I4:148/99.33\|I5:110/98.21\|J1:2213/98.22\|J2:799/99.01\|K1:1823/97.28\|K2:359/95.48\|L0:935/55.56\|L1:928/95.67\|L2:1449/96.47\|L3:2286/97.11\|L4:107/98.17\|L5:36/94.74\|L6:12/100.00\|M1:253/98.44\|M10:76/100.00\|M11:39/97.50\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:29/100.00\|M2:253/99.61\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M23:233/100.00\|M24:60/98.36\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:191/99.48\|M30:139/100.00\|M31:29/100.00\|M32:161/100.00\|M33:90/100.00\|M34:11/100.00\|M35:107/98.17\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:43/100.00\|M4:31/100.00\|M40:30/100.00\|M41:12/100.00\|M42:58/96.67\|M44:12/100.00\|M45:29/96.67\|M46:12/100.00\|M49:42/100.00\|M5:215/98.62\|M50:20/95.24\|M51:71/98.61\|M52:49/100.00\|M53:27/100.00\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:35/100.00\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:46/97.87\|M66:11/91.67\|M68:35/100.00\|M69:15/100.00\|M7:1604/99.57\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:106/98.15\|M9:353/99.44\|M91:24/100.00\|N1:348/98.58\|N10:25/80.65\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:390/99.74\|P1:202/100.00\|P2:51/98.08\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:13/100.00\|Q1:350/99.15\|Q2:46/100.00\|Q3:38/92.68\|R1:72/98.63\|R11:58/98.31\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:104/100.00\|R5:57/100.00\|R6:32/100.00\|R7:26/96.30\|R8:103/100.00\|R9:239/99.58\|S1:22/100.00\|S2:21/100.00\|T1:807/97.11\|T2:2086/97.43\|U1:208/98.58\|U2:535/97.63\|U3:415/98.57\|U4:750/96.15\|U5:2417/96.33\|U6:569/99.30\|U7:471/99.79\|U8:166/96.51\|U9:17/94.44\|W1:229/96.22\|W3:142/95.95\|W4:44/97.78\|W5:67/95.71\|W6:109/99.09\|X1:16/100.00\|X2:623/97.65\|X3:20/100.00\|Y1:150/100.00\|Y2:63/100.00\|Z1:110/100.00\|Z3:120/99.17\|Z4:37/100.00	.	.	.	.	.	6	40199	0.00010683	0.715743	56164	.	PASS	.	11023
chrM	217	rs41531144	T	C	0.997	512	0.997	.	.	U2:359/65.51	.	.	.	.	.	9	874	0.000159555	0.0154945	56407	.	PASS	.	9278
chrM	310	rs1556422421	T	C	0.718	24726	0.718	Possible-protective-factor-for-normal-tension-glaucoma	Reported	A13:14/53.85\|A2:727/62.19\|A5:77/66.96\|B2:764/69.14\|C1:616/64.84\|D1:251/50.60\|D2:58/57.43\|H10:151/63.71\|H101:7/53.85\|H13:240/64.69\|H14:55/53.40\|H15:76/69.09\|H2:502/55.29\|H31:25/50.00\|H35:22/75.86\|H40:16/69.57\|H41:28/80.00\|H44:15/60.00\|H49:37/74.00\|H52:11/50.00\|H56:18/52.94\|H6:277/57.95\|H73:7/58.33\|H79:10/62.50\|H8:37/53.62\|HV1:89/61.81\|HV13:11/61.11\|HV14:51/86.44\|HV16:15/83.33\|HV18:10/83.33\|HV2:37/61.67\|HV4:79/77.45\|HV6:17/68.00\|I3:57/72.15\|L6:7/58.33\|M1:139/54.09\|M11:26/65.00\|M12:74/51.03\|M21:61/58.10\|M22:6/50.00\|M3:97/50.52\|M33:51/56.67\|M34:7/63.64\|M36:33/86.84\|M38:18/66.67\|M39:32/74.42\|M44:8/66.67\|M45:18/60.00\|M46:10/83.33\|M5:111/50.92\|M50:16/76.19\|M53:23/85.19\|M54:7/58.33\|M57:15/88.24\|M61:14/53.85\|M62:19/70.37\|M72:13/59.09\|M73:24/58.54\|M76:17/50.00\|M8:57/52.78\|M91:16/66.67\|N2:7/63.64\|N7:10/66.67\|N9:231/59.08\|P9:11/84.62\|R0:178/58.36\|R1:42/57.53\|R2:52/66.67\|R21:6/50.00\|R8:71/68.93\|T1:425/51.14\|U1:106/50.24\|U2:296/54.01\|U7:260/55.08\|U8:102/59.30\|V1:99/73.33\|V10:23/82.14\|V13:11/91.67\|V15:11/68.75\|V18:10/66.67\|V22:19/95.00\|V3:34/75.56\|V5:11/91.67\|V7:71/66.36\|V8:12/75.00\|V9:16/50.00\|W3:96/64.86\|W6:63/57.27\|Y1:104/69.33\|Y2:38/60.32\|Z1:68/61.82\|Z3:78/64.46	30312593	noncoding	.	.	.	26	375	0.00367232	0.0529661	7080	artifact_prone_site	PASS	.	7858
chrM	3071	.	T	C	0.07	.	0.07	.	.	.	.	.	.	.	.	0	0	0	0	56429	npg	PASS	.	16291
chrM	4560	rs1603219511	G	A	0.068	10	0.068	.	.	.	.	.	.	.	.	0	21	0	0.000375819	55878	.	PASS	.	11954
chrM	13369	rs1603224162	T	C	0.078	0	0.078	.	.	.	.	.	.	.	.	1	0	1.77258e-05	0	56415	.	PASS	.	11728
chrM	16182	rs879044186	A	C	0.202	3647	0.202	.	.	B4:1858/59.97\|B6:37/52.11\|R11:41/69.49	.	.	.	.	.	1656	28	0.0300011	0.000507265	55198	artifact_prone_site	PASS	.	5326
chrM	16189	rs28693675	T	C	0.987	15259	0.987	Diabetes-/-Cardiomyopathy-/cancer-risk-/-mtDNA-copy-nbr-/-Metabolic-Syndrome-/-Melanoma-patients	Reported	A12:12/92.31\|B2:1058/95.75\|B4:2725/87.96\|B5:735/88.34\|B6:71/100.00\|D5:350/81.97\|D6:22/64.71\|H55:22/75.86\|HV18:12/100.00\|L0:1502/89.25\|L1:902/92.99\|L5:21/55.26\|M1:204/79.38\|M29:15/100.00\|M45:21/70.00\|M53:25/92.59\|M54:9/75.00\|M76:34/100.00\|N10:25/80.65\|N3:22/100.00\|R11:57/96.61\|T1:746/89.77\|U1:151/71.56\|U2:370/67.52\|V9:17/53.12\|X1:15/93.75\|X2:568/89.03\|X3:19/95.00\|Y1:103/68.67	9820026	noncoding	-	+	.	220	13910	0.00393124	0.248562	55962	.	PASS	.	5267

Shared Variants (LR/Nanomito format)

Variants present in both sequencing methods (LR/Nanomito VCF format)

CHROM	POS	ID	REF	ALT	HPL	MitoMap_AC	MitoMap_AF	MitoMap_Disease	MitoMap_DiseaseStatus	MitoMap_HGFL	MitoMap_PubmedIDs	MitoMap_aachange	MitoMap_heteroplasmy	MitoMap_homoplasmy	gnomAD_mitotip_score	gnomAD_AC_het	gnomAD_AC_hom	gnomAD_AF_het	gnomAD_AF_hom	gnomAD_AN	gnomAD_filters	FILTER	ADF	ADR	QUAL	DP	END
chrM	152	rs117135796	T	C	1	15684	1	.	.	A1:14/100.00\|A11:38/97.44\|A12:13/100.00\|A13:26/100.00\|A14:36/94.74\|A15:74/96.10\|A17:45/97.83\|A21:12/92.31\|A6:18/100.00\|F3:166/52.20\|H16:58/50.88\|H23:56/52.83\|H32:12/75.00\|H34:11/91.67\|H36:23/79.31\|H46:17/77.27\|H52:21/95.45\|H71:8/80.00\|H9:20/90.91\|HV2:56/93.33\|I2:215/90.34\|I3:78/98.73\|J2:649/80.42\|K2:231/61.44\|L0:1136/67.50\|L1:885/91.24\|L2:1379/91.81\|L5:30/78.95\|L6:10/83.33\|M13:57/74.03\|M20:81/98.78\|M23:222/95.28\|M24:32/52.46\|M26:11/100.00\|M28:60/96.77\|M29:15/100.00\|M36:30/78.95\|M37:25/67.57\|M45:26/86.67\|M57:10/58.82\|M61:18/69.23\|M68:23/65.71\|N1:236/66.86\|N11:13/59.09\|N7:8/53.33\|N8:16/76.19\|P4:36/83.72\|P5:24/96.00\|P9:7/53.85\|R2:75/96.15\|R21:12/100.00\|R5:41/71.93\|S1:13/59.09\|T1:576/69.31\|U2:443/80.84\|U7:466/98.73\|Z1:110/100.00\|Z3:114/94.21\|Z4:37/100.00	.	.	.	.	.	191	17705	0.00342337	0.317334	55793	.	PASS	1,241	0,185	40	446	.
chrM	189	rs371543232	A	G	0.08728	3132	0	.	.	N10:18/58.06\|N2:9/81.82\|R11:32/54.24\|W1:226/94.96\|W3:132/89.19\|W4:41/91.11\|W5:64/91.43\|W6:109/99.09	.	.	.	.	.	78	4336	0.00139224	0.077394	56025	.	PASS	232,18	160,20	40	446	.
chrM	263	rs2853515	A	G	1	59299	1	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A17:46/100.00\|A2:1142/97.69\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1086/98.28\|B4:3089/99.71\|B5:828/99.52\|B6:71/100.00\|C1:904/95.16\|C4:788/99.37\|C5:211/98.60\|C7:209/99.52\|D1:458/92.34\|D2:100/99.01\|D3:45/100.00\|D4:1673/98.99\|D5:408/95.55\|D6:34/100.00\|E1:381/99.74\|E2:88/100.00\|F1:1402/99.43\|F2:184/99.46\|F3:318/100.00\|F4:107/99.07\|G1:204/100.00\|G2:341/98.27\|G3:61/100.00\|H1:4119/96.13\|H10:231/97.47\|H100:16/100.00\|H101:13/100.00\|H104:10/90.91\|H11:252/97.67\|H12:12/92.31\|H13:356/95.96\|H14:103/100.00\|H15:107/97.27\|H16:113/99.12\|H17:62/89.86\|H18:41/97.62\|H2:770/84.80\|H20:65/100.00\|H23:104/98.11\|H24:82/96.47\|H26:79/98.75\|H27:96/90.57\|H28:54/100.00\|H3:1325/96.72\|H30:18/100.00\|H31:49/98.00\|H32:14/87.50\|H33:29/100.00\|H34:12/100.00\|H35:29/100.00\|H36:29/100.00\|H39:60/90.91\|H4:357/96.23\|H40:21/91.30\|H41:35/100.00\|H42:22/100.00\|H43:11/100.00\|H44:24/96.00\|H45:23/88.46\|H46:22/100.00\|H47:18/100.00\|H48:12/92.31\|H49:45/90.00\|H5:926/96.16\|H50:11/100.00\|H51:16/100.00\|H52:21/95.45\|H53:11/91.67\|H55:28/96.55\|H56:33/97.06\|H58:53/96.36\|H59:19/100.00\|H6:462/96.65\|H61:11/100.00\|H65:10/100.00\|H66:12/100.00\|H7:423/97.47\|H71:10/100.00\|H73:12/100.00\|H79:16/100.00\|H8:68/98.55\|H82:10/100.00\|H86:12/92.31\|H9:20/90.91\|HV0:220/99.10\|HV1:142/98.61\|HV12:31/96.88\|HV13:18/100.00\|HV14:59/100.00\|HV16:17/94.44\|HV18:12/100.00\|HV2:60/100.00\|HV4:101/99.02\|HV5:11/91.67\|HV6:25/100.00\|HV9:85/97.70\|I1:318/97.85\|I2:226/94.96\|I3:78/98.73\|I4:141/94.63\|I5:110/98.21\|J1:2202/97.74\|J2:794/98.39\|K1:1823/97.28\|K2:362/96.28\|L1:925/95.36\|L2:1447/96.34\|L3:2286/97.11\|L4:107/98.17\|L5:36/94.74\|L6:12/100.00\|M1:249/96.89\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:29/100.00\|M2:250/98.43\|M20:82/100.00\|M21:104/99.05\|M22:12/100.00\|M23:233/100.00\|M24:60/98.36\|M26:11/100.00\|M27:144/100.00\|M28:61/98.39\|M29:15/100.00\|M3:191/99.48\|M30:139/100.00\|M31:29/100.00\|M32:161/100.00\|M33:90/100.00\|M34:11/100.00\|M35:109/100.00\|M36:38/100.00\|M37:37/100.00\|M38:26/96.30\|M39:43/100.00\|M4:31/100.00\|M40:30/100.00\|M41:12/100.00\|M42:57/95.00\|M44:12/100.00\|M45:29/96.67\|M46:11/91.67\|M49:42/100.00\|M5:216/99.08\|M50:20/95.24\|M51:71/98.61\|M52:48/97.96\|M53:27/100.00\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:35/100.00\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:46/97.87\|M66:11/91.67\|M68:35/100.00\|M69:15/100.00\|M7:1602/99.44\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:106/98.15\|M9:353/99.44\|M91:24/100.00\|N1:351/99.43\|N10:25/80.65\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:387/98.98\|P1:202/100.00\|P2:51/98.08\|P3:19/86.36\|P4:43/100.00\|P5:24/96.00\|P9:13/100.00\|Q1:349/98.87\|Q2:46/100.00\|Q3:38/92.68\|R0:302/99.02\|R1:72/98.63\|R11:58/98.31\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:103/99.04\|R5:56/98.25\|R6:31/96.88\|R7:27/100.00\|R8:102/99.03\|R9:239/99.58\|S1:22/100.00\|S2:21/100.00\|T1:811/97.59\|T2:2075/96.92\|U1:208/98.58\|U2:511/93.25\|U3:416/98.81\|U4:762/97.69\|U5:2417/96.33\|U6:569/99.30\|U7:471/99.79\|U8:163/94.77\|U9:17/94.44\|V1:124/91.85\|V10:28/100.00\|V13:12/100.00\|V15:15/93.75\|V16:14/100.00\|V18:14/93.33\|V2:46/97.87\|V22:20/100.00\|V25:20/100.00\|V3:45/100.00\|V5:12/100.00\|V7:94/87.85\|V8:14/87.50\|V9:32/100.00\|W1:227/95.38\|W3:142/95.95\|W4:44/97.78\|W5:68/97.14\|W6:108/98.18\|X1:16/100.00\|X2:619/97.02\|X3:20/100.00\|Y1:149/99.33\|Y2:63/100.00\|Z1:110/100.00\|Z3:120/99.17\|Z4:37/100.00	.	.	.	.	.	11	55895	0.000194966	0.990695	56420	.	PASS	4,243	0,188	40	446	.
chrM	340	rs117394573	C	T	0.99713	245	0	.	.	.	.	.	.	.	.	1	322	1.77208e-05	0.00570608	56431	.	PASS	2,243	0,184	40	446	.
chrM	508	rs113683159	A	G	1	449	1	.	.	U2:373/68.07\|V18:13/86.67	.	.	.	.	.	3	590	5.31707e-05	0.0104569	56422	.	PASS	0,239	0,190	40	446	.
chrM	750	rs2853518	A	G	1	60935	1	.	.	A1:14/100.00\|A11:38/97.44\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:77/100.00\|A17:46/100.00\|A2:1169/100.00\|A21:13/100.00\|A5:114/99.13\|A6:18/100.00\|A8:28/100.00\|B2:1105/100.00\|B4:3098/100.00\|B5:829/99.64\|B6:71/100.00\|C1:950/100.00\|C4:790/99.62\|C5:214/100.00\|C7:209/99.52\|D1:495/99.80\|D2:99/98.02\|D3:45/100.00\|D4:1689/99.94\|D5:426/99.77\|D6:34/100.00\|E1:382/100.00\|E2:88/100.00\|F1:1410/100.00\|F2:184/99.46\|F3:318/100.00\|F4:108/100.00\|G1:204/100.00\|G2:346/99.71\|G3:60/98.36\|H1:4275/99.77\|H10:237/100.00\|H100:16/100.00\|H101:13/100.00\|H104:11/100.00\|H11:258/100.00\|H12:13/100.00\|H13:371/100.00\|H14:103/100.00\|H15:110/100.00\|H16:114/100.00\|H17:69/100.00\|H18:42/100.00\|H2:489/53.85\|H20:63/96.92\|H23:106/100.00\|H24:85/100.00\|H26:80/100.00\|H27:101/95.28\|H28:54/100.00\|H3:1362/99.42\|H30:18/100.00\|H31:50/100.00\|H32:15/93.75\|H33:29/100.00\|H34:12/100.00\|H35:29/100.00\|H36:29/100.00\|H39:64/96.97\|H4:370/99.73\|H40:22/95.65\|H41:35/100.00\|H42:22/100.00\|H43:11/100.00\|H44:25/100.00\|H45:25/96.15\|H46:22/100.00\|H47:18/100.00\|H48:13/100.00\|H49:50/100.00\|H5:957/99.38\|H50:11/100.00\|H51:16/100.00\|H52:22/100.00\|H53:12/100.00\|H55:29/100.00\|H56:34/100.00\|H58:55/100.00\|H59:19/100.00\|H6:478/100.00\|H61:10/90.91\|H65:10/100.00\|H66:12/100.00\|H7:433/99.77\|H71:10/100.00\|H73:12/100.00\|H79:16/100.00\|H8:69/100.00\|H82:10/100.00\|H86:12/92.31\|H9:22/100.00\|HV0:222/100.00\|HV1:141/97.92\|HV12:31/96.88\|HV13:18/100.00\|HV14:59/100.00\|HV16:18/100.00\|HV18:12/100.00\|HV2:60/100.00\|HV4:102/100.00\|HV5:12/100.00\|HV6:25/100.00\|HV9:87/100.00\|I1:324/99.69\|I2:235/98.74\|I3:78/98.73\|I4:149/100.00\|I5:112/100.00\|J1:2251/99.91\|J2:806/99.88\|K1:1866/99.57\|K2:376/100.00\|L0:1683/100.00\|L1:965/99.48\|L2:1499/99.80\|L3:2052/87.17\|L4:109/100.00\|L5:38/100.00\|L6:12/100.00\|M1:257/100.00\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:76/98.70\|M17:66/100.00\|M18:27/93.10\|M2:254/100.00\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M23:233/100.00\|M24:61/100.00\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:191/99.48\|M30:139/100.00\|M31:29/100.00\|M32:161/100.00\|M33:89/98.89\|M34:10/90.91\|M35:108/99.08\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:43/100.00\|M4:31/100.00\|M40:30/100.00\|M41:12/100.00\|M42:58/96.67\|M44:12/100.00\|M45:30/100.00\|M46:12/100.00\|M49:41/97.62\|M5:218/100.00\|M50:21/100.00\|M51:72/100.00\|M52:49/100.00\|M53:27/100.00\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:35/100.00\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:47/100.00\|M66:12/100.00\|M68:35/100.00\|M69:15/100.00\|M7:1609/99.88\|M70:13/100.00\|M71:113/100.00\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:108/100.00\|M9:355/100.00\|M91:24/100.00\|N1:353/100.00\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:390/99.74\|P1:202/100.00\|P2:52/100.00\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:13/100.00\|Q1:353/100.00\|Q2:46/100.00\|Q3:41/100.00\|R0:304/99.67\|R1:72/98.63\|R11:59/100.00\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:102/98.08\|R5:55/96.49\|R6:31/96.88\|R7:27/100.00\|R8:103/100.00\|R9:240/100.00\|S1:22/100.00\|S2:21/100.00\|T1:829/99.76\|T2:2138/99.86\|U1:208/98.58\|U2:548/100.00\|U3:420/99.76\|U4:762/97.69\|U5:2507/99.92\|U6:564/98.43\|U7:472/100.00\|U8:171/99.42\|U9:18/100.00\|V1:134/99.26\|V10:28/100.00\|V13:12/100.00\|V15:16/100.00\|V16:14/100.00\|V18:15/100.00\|V2:46/97.87\|V22:20/100.00\|V25:20/100.00\|V3:45/100.00\|V5:12/100.00\|V7:106/99.07\|V8:16/100.00\|V9:32/100.00\|W1:237/99.58\|W3:148/100.00\|W4:45/100.00\|W5:70/100.00\|W6:110/100.00\|X1:16/100.00\|X2:636/99.69\|X3:20/100.00\|Y1:150/100.00\|Y2:63/100.00\|Z1:110/100.00\|Z3:121/100.00\|Z4:37/100.00	.	.	.	.	.	6	55419	0.00010647	0.983408	56354	.	PASS	1,251	1,180	40	446	.
chrM	1438	rs2001030	A	G	0.99826	59088	0	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:77/100.00\|A17:46/100.00\|A2:1167/99.83\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1104/99.91\|B4:3096/99.94\|B5:830/99.76\|B6:71/100.00\|C1:940/98.95\|C4:783/98.74\|C5:213/99.53\|C7:208/99.05\|D1:496/100.00\|D2:99/98.02\|D3:45/100.00\|D4:1685/99.70\|D5:232/54.33\|D6:34/100.00\|E1:382/100.00\|E2:88/100.00\|F1:1403/99.50\|F2:180/97.30\|F3:317/99.69\|F4:108/100.00\|G1:204/100.00\|G2:347/100.00\|G3:61/100.00\|H1:4267/99.58\|H10:235/99.16\|H100:16/100.00\|H101:13/100.00\|H104:11/100.00\|H11:256/99.22\|H12:13/100.00\|H13:359/96.77\|H14:98/95.15\|H15:110/100.00\|H16:114/100.00\|H17:69/100.00\|H18:42/100.00\|H20:63/96.92\|H23:106/100.00\|H24:85/100.00\|H26:80/100.00\|H27:101/95.28\|H28:54/100.00\|H3:1356/98.98\|H30:18/100.00\|H31:50/100.00\|H32:15/93.75\|H33:29/100.00\|H34:12/100.00\|H35:29/100.00\|H36:29/100.00\|H39:64/96.97\|H4:370/99.73\|H40:23/100.00\|H41:35/100.00\|H42:22/100.00\|H43:11/100.00\|H44:25/100.00\|H45:26/100.00\|H46:21/95.45\|H47:18/100.00\|H48:13/100.00\|H49:50/100.00\|H5:958/99.48\|H50:11/100.00\|H51:16/100.00\|H52:22/100.00\|H53:12/100.00\|H55:29/100.00\|H56:34/100.00\|H58:55/100.00\|H59:19/100.00\|H6:478/100.00\|H61:11/100.00\|H65:10/100.00\|H66:12/100.00\|H7:433/99.77\|H71:10/100.00\|H73:12/100.00\|H79:16/100.00\|H8:69/100.00\|H82:10/100.00\|H86:12/92.31\|H9:22/100.00\|HV0:222/100.00\|HV1:144/100.00\|HV12:31/96.88\|HV13:18/100.00\|HV14:59/100.00\|HV16:18/100.00\|HV18:12/100.00\|HV2:60/100.00\|HV4:102/100.00\|HV5:12/100.00\|HV6:25/100.00\|HV9:86/98.85\|I1:325/100.00\|I2:238/100.00\|I3:79/100.00\|I4:141/94.63\|I5:99/88.39\|J1:2243/99.56\|J2:807/100.00\|K1:1867/99.63\|K2:376/100.00\|L0:880/52.29\|L1:612/63.09\|L2:1497/99.67\|L3:2334/99.15\|L4:105/96.33\|L5:38/100.00\|L6:12/100.00\|M1:255/99.22\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:28/96.55\|M2:254/100.00\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M23:232/99.57\|M24:60/98.36\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:181/94.27\|M30:138/99.28\|M31:29/100.00\|M33:90/100.00\|M34:11/100.00\|M35:109/100.00\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:43/100.00\|M4:31/100.00\|M40:30/100.00\|M41:12/100.00\|M42:59/98.33\|M44:12/100.00\|M45:30/100.00\|M46:12/100.00\|M49:42/100.00\|M5:218/100.00\|M50:20/95.24\|M51:72/100.00\|M52:49/100.00\|M53:27/100.00\|M54:11/91.67\|M55:14/100.00\|M57:17/100.00\|M6:35/100.00\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:47/100.00\|M66:11/91.67\|M68:35/100.00\|M69:15/100.00\|M7:1608/99.81\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:108/100.00\|M9:355/100.00\|M91:24/100.00\|N1:351/99.43\|N10:31/100.00\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:390/99.74\|P1:202/100.00\|P3:22/100.00\|P4:43/100.00\|P5:22/88.00\|P9:13/100.00\|Q1:352/99.72\|Q2:46/100.00\|Q3:41/100.00\|R0:305/100.00\|R1:72/98.63\|R11:57/96.61\|R2:77/98.72\|R21:12/100.00\|R22:61/100.00\|R30:104/100.00\|R5:57/100.00\|R6:32/100.00\|R7:27/100.00\|R8:103/100.00\|R9:239/99.58\|S1:22/100.00\|S2:21/100.00\|T1:827/99.52\|T2:2138/99.86\|U1:209/99.05\|U2:545/99.45\|U3:420/99.76\|U4:762/97.69\|U5:2500/99.64\|U6:572/99.83\|U7:471/99.79\|U8:172/100.00\|U9:18/100.00\|V1:134/99.26\|V10:28/100.00\|V13:12/100.00\|V15:16/100.00\|V16:14/100.00\|V18:15/100.00\|V2:47/100.00\|V22:20/100.00\|V25:20/100.00\|V3:45/100.00\|V5:12/100.00\|V7:107/100.00\|V8:16/100.00\|V9:32/100.00\|W1:237/99.58\|W3:148/100.00\|W4:44/97.78\|W5:70/100.00\|W6:108/98.18\|X1:16/100.00\|X2:637/99.84\|X3:20/100.00\|Y1:149/99.33\|Y2:63/100.00\|Z1:109/99.09\|Z3:121/100.00\|Z4:37/100.00	.	.	.	.	.	4	53745	7.11579e-05	0.956096	56213	.	PASS	2,245	1,184	40	446	.
chrM	1811	rs28358576	A	G	1	4691	1	.	.	K1:1854/98.93\|K2:374/99.47\|M39:39/90.70\|S1:13/59.09\|U2:543/99.09\|U3:419/99.52\|U4:757/97.05\|U7:470/99.58\|U8:141/81.98\|U9:18/100.00	.	.	.	.	.	9	4957	0.000159659	0.0879368	56370	.	PASS	1,246	0,185	40	446	.
chrM	2706	rs2854128	A	G	1	48426	1	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:76/98.70\|A17:46/100.00\|A2:1169/100.00\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1101/99.64\|B4:3087/99.64\|B5:808/97.12\|B6:71/100.00\|C1:949/99.89\|C4:790/99.62\|C5:214/100.00\|C7:210/100.00\|D1:495/99.80\|D2:99/98.02\|D3:45/100.00\|D4:1663/98.40\|D5:425/99.53\|D6:33/97.06\|E1:382/100.00\|E2:88/100.00\|F1:1402/99.43\|F2:184/99.46\|F3:318/100.00\|F4:108/100.00\|G1:204/100.00\|G2:345/99.42\|G3:61/100.00\|HV0:220/99.10\|HV1:144/100.00\|HV12:31/96.88\|HV13:18/100.00\|HV14:59/100.00\|HV16:18/100.00\|HV18:12/100.00\|HV2:60/100.00\|HV4:102/100.00\|HV5:12/100.00\|HV6:25/100.00\|HV9:85/97.70\|I1:324/99.69\|I2:238/100.00\|I3:79/100.00\|I4:149/100.00\|I5:112/100.00\|J1:2224/98.71\|J2:806/99.88\|K1:1868/99.68\|K2:375/99.73\|L0:1156/68.69\|L1:965/99.48\|L2:1497/99.67\|L3:2353/99.96\|L4:109/100.00\|L5:38/100.00\|L6:10/83.33\|M1:255/99.22\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:27/93.10\|M2:249/98.03\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M24:61/100.00\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:189/98.44\|M30:137/98.56\|M31:29/100.00\|M32:161/100.00\|M33:88/97.78\|M34:11/100.00\|M35:109/100.00\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:43/100.00\|M4:29/93.55\|M40:30/100.00\|M41:11/91.67\|M42:59/98.33\|M44:12/100.00\|M46:12/100.00\|M49:42/100.00\|M5:212/97.25\|M50:20/95.24\|M51:72/100.00\|M52:47/95.92\|M53:27/100.00\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:35/100.00\|M60:14/100.00\|M61:25/96.15\|M62:27/100.00\|M65:47/100.00\|M66:12/100.00\|M68:35/100.00\|M69:15/100.00\|M7:1608/99.81\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:108/100.00\|M9:355/100.00\|M91:24/100.00\|N1:352/99.72\|N10:31/100.00\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:388/99.23\|P1:202/100.00\|P2:52/100.00\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:13/100.00\|Q1:350/99.15\|Q2:46/100.00\|Q3:41/100.00\|R0:305/100.00\|R1:71/97.26\|R11:59/100.00\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:103/99.04\|R5:52/91.23\|R6:32/100.00\|R7:26/96.30\|R8:103/100.00\|R9:240/100.00\|S1:22/100.00\|S2:21/100.00\|T1:829/99.76\|T2:2136/99.77\|U1:209/99.05\|U2:484/88.32\|U3:419/99.52\|U4:761/97.56\|U5:2499/99.60\|U6:572/99.83\|U7:470/99.58\|U8:172/100.00\|U9:18/100.00\|V1:135/100.00\|V10:27/96.43\|V13:12/100.00\|V15:16/100.00\|V16:14/100.00\|V18:15/100.00\|V2:47/100.00\|V22:20/100.00\|V25:20/100.00\|V3:45/100.00\|V5:12/100.00\|V7:106/99.07\|V8:16/100.00\|V9:32/100.00\|W1:237/99.58\|W3:147/99.32\|W4:45/100.00\|W5:70/100.00\|W6:109/99.09\|X1:16/100.00\|X2:637/99.84\|X3:20/100.00\|Y1:149/99.33\|Y2:63/100.00\|Z1:109/99.09\|Z3:121/100.00\|Z4:37/100.00	.	.	.	.	.	5	41427	8.92522e-05	0.739491	56021	.	PASS	3,240	1,180	40	445	.
chrM	3116	rs112161681	C	T	1	131	1	.	.	.	.	.	.	.	.	1	152	1.77201e-05	0.00269346	56433	.	PASS	0,248	0,182	40	446	.
chrM	3197	rs2854131	T	C	1	2582	1	.	.	U5:2492/99.32	.	.	.	.	.	2	3631	3.54622e-05	0.0643817	56398	.	PASS	0,249	0,189	40	446	.
chrM	3243	rs199474657	A	G	0.34761	10	0	MELAS-/-Leigh-Syndrome-/-DMDF-/-MIDD-/-SNHL-/-CPEO-/-MM-/-FSGS-/-ASD-/-Cardiac+multi-organ-dysfunction,MM-/-MELAS-/-SNHL-/-CPEO	Cfrm-[P],Cfrm-[LP]	.	8363469,9168904	.	+	-	13.3483	6	0	0.000106415	0	56383	.	PASS	161,84	121,66	40	446	.
chrM	3720	rs41355750	A	G	0.99105	412	0	.	.	U2:386/70.44	.	.	.	.	.	2	559	3.54478e-05	0.00990766	56421	.	PASS	5,232	0,175	40	446	.
chrM	4769	rs3021086	A	G	1	60667	1	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:77/100.00\|A17:46/100.00\|A2:1166/99.74\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1105/100.00\|B4:3063/98.87\|B5:830/99.76\|B6:71/100.00\|C1:949/99.89\|C4:790/99.62\|C5:214/100.00\|C7:210/100.00\|D1:495/99.80\|D2:99/98.02\|D3:45/100.00\|D4:1686/99.76\|D5:425/99.53\|D6:34/100.00\|E1:382/100.00\|E2:88/100.00\|F1:1406/99.72\|F2:184/99.46\|F3:318/100.00\|F4:107/99.07\|G1:204/100.00\|G2:347/100.00\|G3:60/98.36\|H1:4269/99.63\|H10:237/100.00\|H100:16/100.00\|H101:13/100.00\|H104:11/100.00\|H11:256/99.22\|H12:13/100.00\|H13:370/99.73\|H14:103/100.00\|H15:109/99.09\|H16:114/100.00\|H17:69/100.00\|H18:42/100.00\|H20:63/96.92\|H23:106/100.00\|H24:85/100.00\|H26:80/100.00\|H27:101/95.28\|H28:54/100.00\|H3:1360/99.27\|H30:18/100.00\|H31:50/100.00\|H32:15/93.75\|H33:29/100.00\|H34:12/100.00\|H35:29/100.00\|H36:29/100.00\|H39:64/96.97\|H4:369/99.46\|H40:23/100.00\|H41:35/100.00\|H42:22/100.00\|H43:11/100.00\|H44:25/100.00\|H45:26/100.00\|H46:22/100.00\|H47:18/100.00\|H48:13/100.00\|H49:50/100.00\|H5:958/99.48\|H50:11/100.00\|H51:16/100.00\|H52:22/100.00\|H53:12/100.00\|H55:29/100.00\|H56:33/97.06\|H58:55/100.00\|H59:19/100.00\|H6:478/100.00\|H61:11/100.00\|H65:10/100.00\|H66:12/100.00\|H7:434/100.00\|H71:10/100.00\|H73:12/100.00\|H79:16/100.00\|H8:69/100.00\|H82:10/100.00\|H86:11/84.62\|H9:22/100.00\|HV0:221/99.55\|HV1:144/100.00\|HV12:31/96.88\|HV13:18/100.00\|HV14:59/100.00\|HV16:18/100.00\|HV18:12/100.00\|HV2:60/100.00\|HV4:100/98.04\|HV5:12/100.00\|HV6:25/100.00\|HV9:86/98.85\|I1:324/99.69\|I2:238/100.00\|I3:79/100.00\|I4:149/100.00\|I5:112/100.00\|J1:2252/99.96\|J2:805/99.75\|K1:1874/100.00\|K2:376/100.00\|L0:1644/97.68\|L1:965/99.48\|L2:1500/99.87\|L3:2350/99.83\|L4:105/96.33\|L5:38/100.00\|L6:12/100.00\|M1:257/100.00\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:28/96.55\|M2:254/100.00\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M23:233/100.00\|M24:61/100.00\|M26:11/100.00\|M27:143/99.31\|M28:62/100.00\|M29:15/100.00\|M3:192/100.00\|M30:139/100.00\|M31:29/100.00\|M32:161/100.00\|M33:89/98.89\|M34:11/100.00\|M35:107/98.17\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:43/100.00\|M4:31/100.00\|M40:30/100.00\|M41:12/100.00\|M42:59/98.33\|M44:12/100.00\|M45:29/96.67\|M46:12/100.00\|M49:39/92.86\|M5:218/100.00\|M50:20/95.24\|M51:72/100.00\|M52:49/100.00\|M53:27/100.00\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:34/97.14\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:47/100.00\|M66:12/100.00\|M68:35/100.00\|M69:15/100.00\|M7:1610/99.94\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:108/100.00\|M9:355/100.00\|M91:24/100.00\|N1:352/99.72\|N10:31/100.00\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:390/99.74\|P1:202/100.00\|P2:52/100.00\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:13/100.00\|Q1:352/99.72\|Q2:46/100.00\|Q3:41/100.00\|R0:305/100.00\|R1:72/98.63\|R11:59/100.00\|R21:12/100.00\|R22:61/100.00\|R30:104/100.00\|R5:56/98.25\|R6:32/100.00\|R7:26/96.30\|R8:103/100.00\|R9:239/99.58\|S1:22/100.00\|S2:21/100.00\|T1:829/99.76\|T2:2136/99.77\|U1:209/99.05\|U2:545/99.45\|U3:419/99.52\|U4:764/97.95\|U5:2506/99.88\|U6:573/100.00\|U7:459/97.25\|U8:170/98.84\|U9:18/100.00\|V1:135/100.00\|V10:28/100.00\|V13:12/100.00\|V15:16/100.00\|V16:14/100.00\|V18:15/100.00\|V2:46/97.87\|V22:20/100.00\|V25:20/100.00\|V3:45/100.00\|V5:12/100.00\|V7:107/100.00\|V8:16/100.00\|V9:32/100.00\|W1:237/99.58\|W3:148/100.00\|W4:45/100.00\|W5:70/100.00\|W6:110/100.00\|X1:16/100.00\|X2:638/100.00\|X3:20/100.00\|Y1:150/100.00\|Y2:63/100.00\|Z1:110/100.00\|Z3:121/100.00\|Z4:37/100.00	.	.	.	.	.	2	55440	3.54931e-05	0.983868	56349	.	PASS	0,254	0,189	40	446	.
chrM	5390	rs41333444	A	G	1	413	1	.	.	U2:386/70.44	.	.	.	.	.	1	643	1.77223e-05	0.0113955	56426	.	PASS	0,252	0,183	40	446	.
chrM	5426	rs878866102	T	C	1	573	1	.	.	U2:391/71.35	.	.	.	.	.	0	743	0	0.0131689	56421	.	PASS	0,248	1,183	40	446	.
chrM	6045	rs879061193	C	T	1	395	1	.	.	U2:387/70.62	.	.	.	.	.	0	544	0	0.00964146	56423	.	PASS	1,243	0,181	40	446	.
chrM	6152	rs1556423086	T	C	0.9586	472	0	.	.	U2:390/71.17	.	.	.	.	.	2	780	3.54497e-05	0.0138254	56418	.	PASS	11,228	10,174	40	446	.
chrM	7028	rs2015062	C	T	1	49382	1	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:77/100.00\|A17:45/97.83\|A2:1169/100.00\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1105/100.00\|B4:3098/100.00\|B5:832/100.00\|B6:71/100.00\|C1:949/99.89\|C4:790/99.62\|C5:214/100.00\|C7:210/100.00\|D1:495/99.80\|D2:99/98.02\|D3:45/100.00\|D4:1688/99.88\|D5:426/99.77\|D6:34/100.00\|E1:382/100.00\|E2:88/100.00\|F1:1406/99.72\|F2:185/100.00\|F3:318/100.00\|F4:108/100.00\|G1:204/100.00\|G2:347/100.00\|G3:61/100.00\|HV0:219/98.65\|HV1:144/100.00\|HV12:31/96.88\|HV13:18/100.00\|HV14:59/100.00\|HV16:18/100.00\|HV18:12/100.00\|HV2:60/100.00\|HV4:102/100.00\|HV5:12/100.00\|HV6:25/100.00\|HV9:87/100.00\|I1:323/99.38\|I2:238/100.00\|I3:79/100.00\|I4:149/100.00\|I5:111/99.11\|J1:2246/99.69\|J2:804/99.63\|K1:1870/99.79\|K2:375/99.73\|L0:1682/99.94\|L1:965/99.48\|L2:1500/99.87\|L3:2350/99.83\|L4:109/100.00\|L5:38/100.00\|L6:12/100.00\|M1:256/99.61\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:29/100.00\|M2:253/99.61\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M23:233/100.00\|M24:61/100.00\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:192/100.00\|M30:137/98.56\|M31:29/100.00\|M32:161/100.00\|M33:90/100.00\|M34:11/100.00\|M35:109/100.00\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:43/100.00\|M4:31/100.00\|M40:30/100.00\|M41:12/100.00\|M42:59/98.33\|M44:12/100.00\|M45:30/100.00\|M46:12/100.00\|M49:42/100.00\|M5:218/100.00\|M50:20/95.24\|M51:72/100.00\|M52:49/100.00\|M53:27/100.00\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:35/100.00\|M60:14/100.00\|M61:26/100.00\|M62:26/96.30\|M65:47/100.00\|M66:12/100.00\|M68:35/100.00\|M69:15/100.00\|M7:1611/100.00\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:108/100.00\|M9:355/100.00\|M91:24/100.00\|N1:351/99.43\|N10:31/100.00\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:390/99.74\|P1:202/100.00\|P2:52/100.00\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:13/100.00\|Q1:352/99.72\|Q2:46/100.00\|Q3:40/97.56\|R0:302/99.02\|R1:72/98.63\|R11:59/100.00\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:104/100.00\|R5:57/100.00\|R6:31/96.88\|R7:27/100.00\|R8:102/99.03\|R9:236/98.33\|S1:22/100.00\|S2:21/100.00\|T1:826/99.40\|T2:2134/99.67\|U1:209/99.05\|U2:543/99.09\|U3:420/99.76\|U4:763/97.82\|U5:2481/98.88\|U6:572/99.83\|U7:471/99.79\|U8:172/100.00\|U9:18/100.00\|V1:135/100.00\|V10:28/100.00\|V13:12/100.00\|V15:16/100.00\|V16:14/100.00\|V18:15/100.00\|V2:47/100.00\|V22:20/100.00\|V25:20/100.00\|V3:45/100.00\|V5:12/100.00\|V7:107/100.00\|V8:16/100.00\|V9:32/100.00\|W1:237/99.58\|W3:148/100.00\|W4:44/97.78\|W5:69/98.57\|W6:109/99.09\|X1:16/100.00\|X2:635/99.53\|X3:20/100.00\|Y1:150/100.00\|Y2:63/100.00\|Z1:109/99.09\|Z3:121/100.00\|Z4:37/100.00	.	.	.	.	.	2	41590	3.60373e-05	0.749396	55498	.	PASS	0,240	2,184	40	446	.
chrM	8860	rs2001031	A	G	1	61219	1	.	.	A1:14/100.00\|A11:38/97.44\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:77/100.00\|A17:46/100.00\|A2:1168/99.91\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1105/100.00\|B4:3095/99.90\|B5:830/99.76\|B6:71/100.00\|C1:943/99.26\|C4:787/99.24\|C5:213/99.53\|C7:209/99.52\|D1:494/99.60\|D2:99/98.02\|D3:45/100.00\|D4:1686/99.76\|D5:426/99.77\|D6:33/97.06\|E1:381/99.74\|E2:88/100.00\|F1:1404/99.57\|F2:185/100.00\|F3:318/100.00\|F4:108/100.00\|G1:204/100.00\|G2:344/99.14\|G3:61/100.00\|H1:4267/99.58\|H10:237/100.00\|H100:16/100.00\|H101:13/100.00\|H104:11/100.00\|H11:255/98.84\|H12:13/100.00\|H13:369/99.46\|H14:103/100.00\|H15:109/99.09\|H16:113/99.12\|H17:69/100.00\|H18:41/97.62\|H2:615/67.73\|H20:62/95.38\|H23:106/100.00\|H24:85/100.00\|H26:80/100.00\|H27:101/95.28\|H28:54/100.00\|H3:1363/99.49\|H30:18/100.00\|H31:50/100.00\|H32:15/93.75\|H33:29/100.00\|H34:12/100.00\|H35:29/100.00\|H36:29/100.00\|H39:64/96.97\|H4:371/100.00\|H40:23/100.00\|H41:35/100.00\|H42:22/100.00\|H43:11/100.00\|H44:25/100.00\|H45:26/100.00\|H46:22/100.00\|H47:18/100.00\|H48:13/100.00\|H49:50/100.00\|H5:959/99.58\|H50:11/100.00\|H51:16/100.00\|H52:22/100.00\|H53:12/100.00\|H55:29/100.00\|H56:34/100.00\|H58:55/100.00\|H59:18/94.74\|H6:466/97.49\|H61:11/100.00\|H65:10/100.00\|H66:12/100.00\|H7:430/99.08\|H71:10/100.00\|H73:12/100.00\|H79:16/100.00\|H8:69/100.00\|H82:10/100.00\|H86:12/92.31\|H9:22/100.00\|HV0:222/100.00\|HV1:144/100.00\|HV12:31/96.88\|HV13:18/100.00\|HV14:57/96.61\|HV16:18/100.00\|HV18:12/100.00\|HV2:59/98.33\|HV4:102/100.00\|HV5:12/100.00\|HV6:25/100.00\|HV9:87/100.00\|I1:325/100.00\|I2:238/100.00\|I3:79/100.00\|I4:148/99.33\|I5:101/90.18\|J1:2247/99.73\|J2:806/99.88\|K1:1871/99.84\|K2:375/99.73\|L0:1657/98.46\|L1:965/99.48\|L2:1491/99.27\|L3:2345/99.62\|L4:109/100.00\|L5:38/100.00\|L6:12/100.00\|M1:256/99.61\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:23/79.31\|M2:244/96.06\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M23:231/99.14\|M24:61/100.00\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:188/97.92\|M30:137/98.56\|M31:29/100.00\|M32:160/99.38\|M33:88/97.78\|M34:10/90.91\|M35:108/99.08\|M36:38/100.00\|M37:37/100.00\|M38:26/96.30\|M39:43/100.00\|M4:29/93.55\|M40:30/100.00\|M41:12/100.00\|M42:53/88.33\|M44:12/100.00\|M45:29/96.67\|M46:12/100.00\|M49:41/97.62\|M5:209/95.87\|M50:20/95.24\|M51:72/100.00\|M52:49/100.00\|M53:26/96.30\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:35/100.00\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:46/97.87\|M66:12/100.00\|M68:35/100.00\|M69:15/100.00\|M7:1606/99.69\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:108/100.00\|M9:353/99.44\|M91:24/100.00\|N1:352/99.72\|N10:31/100.00\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:390/99.74\|P1:201/99.50\|P2:52/100.00\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:10/76.92\|Q1:352/99.72\|Q2:46/100.00\|Q3:41/100.00\|R0:305/100.00\|R1:72/98.63\|R11:59/100.00\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:102/98.08\|R5:49/85.96\|R6:30/93.75\|R7:27/100.00\|R8:103/100.00\|R9:239/99.58\|S1:22/100.00\|S2:21/100.00\|T1:830/99.88\|T2:2138/99.86\|U1:210/99.53\|U2:538/98.18\|U3:420/99.76\|U4:762/97.69\|U5:2502/99.72\|U6:573/100.00\|U7:471/99.79\|U8:172/100.00\|U9:18/100.00\|V1:134/99.26\|V10:27/96.43\|V13:12/100.00\|V15:16/100.00\|V16:14/100.00\|V18:15/100.00\|V2:47/100.00\|V22:20/100.00\|V25:20/100.00\|V3:45/100.00\|V5:12/100.00\|V7:106/99.07\|V8:16/100.00\|V9:32/100.00\|W1:238/100.00\|W3:148/100.00\|W4:45/100.00\|W5:70/100.00\|W6:109/99.09\|X1:16/100.00\|X2:635/99.53\|X3:20/100.00\|Y1:150/100.00\|Y2:63/100.00\|Z1:110/100.00\|Z3:121/100.00\|Z4:37/100.00	.	.	.	.	.	9	56069	0.000159524	0.993814	56418	.	PASS	2,236	0,183	40	446	.
chrM	10876	rs879036391	A	G	1	561	1	.	.	U2:387/70.62	.	.	.	.	.	0	577	0	0.0102276	56416	.	PASS	0,247	0,183	40	446	.
chrM	11197	rs75214962	C	T	1	122	1	.	.	.	.	.	.	.	.	0	157	0	0.00278206	56433	.	PASS	0,250	0,173	40	446	.
chrM	11467	rs2853493	A	G	0.99543	7930	0	Altered-brain-pH-/-sCJD-patients	Reported-[B]	K1:1862/99.36\|K2:375/99.73\|U1:207/98.10\|U2:544/99.27\|U3:419/99.52\|U4:760/97.44\|U5:2502/99.72\|U6:572/99.83\|U7:471/99.79\|U8:172/100.00\|U9:18/100.00	19290059	L236L	-	+	.	3	8766	5.32453e-05	0.155583	56343	.	PASS	2,230	5,158	40	446	.
chrM	11719	rs2853495	G	A	1	47324	1	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:77/100.00\|A17:46/100.00\|A2:1169/100.00\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1104/99.91\|B4:3098/100.00\|B5:832/100.00\|B6:71/100.00\|C1:948/99.79\|C4:790/99.62\|C5:214/100.00\|C7:210/100.00\|D1:494/99.60\|D2:99/98.02\|D3:45/100.00\|D4:1688/99.88\|D5:427/100.00\|D6:34/100.00\|E1:382/100.00\|E2:88/100.00\|F1:1410/100.00\|F2:185/100.00\|F3:318/100.00\|F4:108/100.00\|G1:204/100.00\|G2:347/100.00\|G3:61/100.00\|H27:98/92.45\|I1:324/99.69\|I2:238/100.00\|I3:79/100.00\|I4:149/100.00\|I5:111/99.11\|J1:2245/99.64\|J2:807/100.00\|K1:1870/99.79\|K2:374/99.47\|L0:1680/99.82\|L1:965/99.48\|L2:1502/100.00\|L3:2351/99.87\|L4:108/99.08\|L5:38/100.00\|L6:12/100.00\|M1:257/100.00\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:29/100.00\|M2:254/100.00\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M23:233/100.00\|M24:61/100.00\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:192/100.00\|M30:139/100.00\|M31:28/96.55\|M32:161/100.00\|M33:90/100.00\|M34:11/100.00\|M35:109/100.00\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:43/100.00\|M4:31/100.00\|M40:30/100.00\|M41:12/100.00\|M42:60/100.00\|M44:12/100.00\|M45:30/100.00\|M46:12/100.00\|M49:42/100.00\|M5:218/100.00\|M50:21/100.00\|M51:72/100.00\|M52:49/100.00\|M53:27/100.00\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:34/97.14\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:47/100.00\|M66:12/100.00\|M68:35/100.00\|M69:15/100.00\|M7:1610/99.94\|M70:13/100.00\|M71:113/100.00\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:108/100.00\|M9:354/99.72\|M91:24/100.00\|N1:349/98.87\|N10:31/100.00\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:390/99.74\|P1:202/100.00\|P2:52/100.00\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:13/100.00\|Q1:352/99.72\|Q2:46/100.00\|Q3:41/100.00\|R1:71/97.26\|R11:59/100.00\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:104/100.00\|R5:57/100.00\|R6:31/96.88\|R7:27/100.00\|R8:103/100.00\|R9:240/100.00\|S1:22/100.00\|S2:21/100.00\|T1:830/99.88\|T2:2133/99.63\|U1:211/100.00\|U2:546/99.64\|U3:419/99.52\|U4:762/97.69\|U5:2502/99.72\|U6:573/100.00\|U7:471/99.79\|U8:171/99.42\|U9:18/100.00\|W1:238/100.00\|W3:148/100.00\|W4:45/100.00\|W5:70/100.00\|W6:110/100.00\|X1:16/100.00\|X2:637/99.84\|X3:20/100.00\|Y1:149/99.33\|Y2:63/100.00\|Z1:110/100.00\|Z3:121/100.00\|Z4:35/94.59	.	.	.	.	.	3	39882	5.34855e-05	0.711036	56090	.	PASS	1,246	1,177	40	446	.
chrM	11732	rs879040138	T	C	1	118	1	.	.	.	.	.	.	.	.	3	179	5.3166e-05	0.00317224	56427	.	PASS	0,245	0,176	40	446	.
chrM	12308	rs2853498	A	G	0.99458	7912	0	CPEO-/-Stroke-/-CM-/-Breast-&-Renal-&-Prostate-Cancer-Risk-/-Altered-brain-pH-/sCJD	Reported-[B]-in-hg-K+U	K1:1867/99.63\|K2:375/99.73\|U1:209/99.05\|U2:538/98.18\|U3:418/99.29\|U4:763/97.82\|U5:2494/99.40\|U6:571/99.65\|U7:470/99.58\|U8:167/97.09\|U9:18/100.00	8155739	.	+	+	11.8509	1	8754	1.77506e-05	0.155389	56336	.	PASS	3,241	1,181	40	446	.
chrM	12372	rs2853499	G	A	1	8556	1	Altered-brain-pH-/-sCJD-patients\|-AD-risk-in-certain-haplogroups	Reported-[B]	K1:1867/99.63\|K2:375/99.73\|M12:145/100.00\|N9:336/85.93\|U1:208/98.58\|U2:545/99.45\|U3:418/99.29\|U4:764/97.95\|U5:2499/99.60\|U6:572/99.83\|U7:470/99.58\|U8:171/99.42\|U9:18/100.00	19290059	L12L	-	+	.	8	8901	0.000141962	0.157951	56353	.	PASS	0,247	0,185	40	446	.
chrM	13020	rs75577869	T	C	1	618	1	.	.	H9:22/100.00\|U2:391/71.35	.	.	.	.	.	11	673	0.00019498	0.0119292	56416	.	PASS	0,246	1,184	40	446	.
chrM	13734	rs41421644	T	C	1	403	1	.	.	U2:387/70.62	.	.	.	.	.	1	587	1.77223e-05	0.010403	56426	.	PASS	0,238	1,175	40	446	.
chrM	14766	rs193302980	C	T	1	47013	1	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:26/100.00\|A14:38/100.00\|A15:77/100.00\|A17:45/97.83\|A2:1168/99.91\|A21:13/100.00\|A5:115/100.00\|A6:18/100.00\|A8:28/100.00\|B2:1093/98.91\|B4:3094/99.87\|B5:828/99.52\|B6:71/100.00\|C1:949/99.89\|C4:790/99.62\|C5:214/100.00\|C7:210/100.00\|D1:495/99.80\|D2:99/98.02\|D3:45/100.00\|D4:1686/99.76\|D5:426/99.77\|D6:34/100.00\|E2:88/100.00\|F1:1401/99.36\|F2:184/99.46\|F3:318/100.00\|F4:108/100.00\|G1:204/100.00\|G2:345/99.42\|G3:59/96.72\|I1:322/99.08\|I2:235/98.74\|I3:79/100.00\|I4:149/100.00\|I5:112/100.00\|J1:2250/99.87\|J2:807/100.00\|K1:1866/99.57\|K2:374/99.47\|L0:1680/99.82\|L1:969/99.90\|L2:1500/99.87\|L3:2351/99.87\|L4:109/100.00\|L5:38/100.00\|L6:12/100.00\|M1:257/100.00\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:28/96.55\|M2:148/58.27\|M20:82/100.00\|M21:104/99.05\|M22:12/100.00\|M23:233/100.00\|M24:61/100.00\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:191/99.48\|M30:139/100.00\|M31:29/100.00\|M32:161/100.00\|M33:90/100.00\|M34:11/100.00\|M35:109/100.00\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:43/100.00\|M4:30/96.77\|M40:30/100.00\|M41:12/100.00\|M42:60/100.00\|M44:12/100.00\|M45:30/100.00\|M46:11/91.67\|M49:42/100.00\|M5:218/100.00\|M50:20/95.24\|M51:71/98.61\|M52:49/100.00\|M53:26/96.30\|M54:12/100.00\|M55:14/100.00\|M57:17/100.00\|M6:34/97.14\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:46/97.87\|M66:12/100.00\|M68:35/100.00\|M69:15/100.00\|M7:1608/99.81\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:33/97.06\|M8:108/100.00\|M9:355/100.00\|M91:24/100.00\|N1:352/99.72\|N10:31/100.00\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:389/99.49\|P1:202/100.00\|P2:52/100.00\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:13/100.00\|Q1:353/100.00\|Q2:46/100.00\|Q3:41/100.00\|R0:303/99.34\|R1:71/97.26\|R11:59/100.00\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:103/99.04\|R5:55/96.49\|R6:31/96.88\|R7:24/88.89\|R8:103/100.00\|R9:240/100.00\|S1:22/100.00\|S2:21/100.00\|T1:831/100.00\|T2:2131/99.53\|U1:209/99.05\|U2:545/99.45\|U3:412/97.86\|U4:758/97.18\|U5:2499/99.60\|U6:569/99.30\|U7:471/99.79\|U8:171/99.42\|U9:18/100.00\|W1:238/100.00\|W3:148/100.00\|W4:45/100.00\|W5:70/100.00\|W6:109/99.09\|X1:16/100.00\|X2:637/99.84\|X3:20/100.00\|Y1:150/100.00\|Y2:63/100.00\|Z1:110/100.00\|Z3:120/99.17\|Z4:37/100.00	.	.	.	.	.	3	39641	5.34893e-05	0.70679	56086	.	PASS	0,247	0,187	40	446	.
chrM	15326	rs2853508	A	G	1	61130	1	.	.	A1:14/100.00\|A11:39/100.00\|A12:13/100.00\|A13:25/96.15\|A14:38/100.00\|A15:77/100.00\|A17:46/100.00\|A2:1160/99.23\|A21:13/100.00\|A5:115/100.00\|A6:17/94.44\|A8:28/100.00\|B2:1102/99.73\|B4:3097/99.97\|B5:832/100.00\|B6:71/100.00\|C1:948/99.79\|C4:783/98.74\|C5:214/100.00\|C7:210/100.00\|D1:484/97.58\|D2:99/98.02\|D3:45/100.00\|D4:1681/99.47\|D5:425/99.53\|D6:33/97.06\|E1:382/100.00\|E2:88/100.00\|F1:1403/99.50\|F2:184/99.46\|F3:318/100.00\|F4:108/100.00\|G1:204/100.00\|G2:347/100.00\|G3:61/100.00\|H1:4261/99.44\|H10:236/99.58\|H100:16/100.00\|H101:13/100.00\|H104:11/100.00\|H11:257/99.61\|H12:13/100.00\|H13:369/99.46\|H14:103/100.00\|H15:110/100.00\|H16:114/100.00\|H17:69/100.00\|H18:42/100.00\|H2:615/67.73\|H20:63/96.92\|H23:106/100.00\|H24:85/100.00\|H26:80/100.00\|H27:101/95.28\|H28:54/100.00\|H3:1360/99.27\|H30:18/100.00\|H31:50/100.00\|H32:15/93.75\|H33:29/100.00\|H34:12/100.00\|H35:29/100.00\|H36:29/100.00\|H39:64/96.97\|H4:370/99.73\|H40:23/100.00\|H41:34/97.14\|H42:22/100.00\|H43:11/100.00\|H44:25/100.00\|H45:26/100.00\|H46:22/100.00\|H47:18/100.00\|H48:13/100.00\|H49:50/100.00\|H5:958/99.48\|H50:11/100.00\|H51:16/100.00\|H52:22/100.00\|H53:12/100.00\|H55:29/100.00\|H56:34/100.00\|H58:55/100.00\|H59:19/100.00\|H6:478/100.00\|H61:11/100.00\|H65:10/100.00\|H66:12/100.00\|H7:431/99.31\|H71:10/100.00\|H73:12/100.00\|H79:16/100.00\|H8:69/100.00\|H82:10/100.00\|H86:12/92.31\|H9:22/100.00\|HV0:222/100.00\|HV1:144/100.00\|HV12:31/96.88\|HV13:18/100.00\|HV14:57/96.61\|HV16:18/100.00\|HV18:12/100.00\|HV2:60/100.00\|HV4:101/99.02\|HV5:12/100.00\|HV6:25/100.00\|HV9:86/98.85\|I1:324/99.69\|I2:238/100.00\|I3:79/100.00\|I4:149/100.00\|I5:112/100.00\|J1:2249/99.82\|J2:807/100.00\|K1:1869/99.73\|K2:376/100.00\|L0:1680/99.82\|L1:966/99.59\|L2:1491/99.27\|L3:2350/99.83\|L4:109/100.00\|L5:38/100.00\|L6:12/100.00\|M1:256/99.61\|M10:76/100.00\|M11:40/100.00\|M12:145/100.00\|M13:77/100.00\|M17:66/100.00\|M18:28/96.55\|M2:253/99.61\|M20:82/100.00\|M21:105/100.00\|M22:12/100.00\|M23:233/100.00\|M24:61/100.00\|M26:11/100.00\|M27:144/100.00\|M28:62/100.00\|M29:15/100.00\|M3:192/100.00\|M30:137/98.56\|M31:29/100.00\|M32:161/100.00\|M33:90/100.00\|M34:11/100.00\|M35:109/100.00\|M36:38/100.00\|M37:37/100.00\|M38:27/100.00\|M39:42/97.67\|M4:30/96.77\|M40:29/96.67\|M41:12/100.00\|M42:59/98.33\|M44:12/100.00\|M45:30/100.00\|M46:12/100.00\|M49:42/100.00\|M5:218/100.00\|M50:20/95.24\|M51:72/100.00\|M52:49/100.00\|M53:27/100.00\|M54:12/100.00\|M55:14/100.00\|M57:16/94.12\|M6:34/97.14\|M60:14/100.00\|M61:26/100.00\|M62:27/100.00\|M65:47/100.00\|M66:12/100.00\|M68:35/100.00\|M69:15/100.00\|M7:1580/98.08\|M70:13/100.00\|M71:112/99.12\|M72:22/100.00\|M73:41/100.00\|M74:128/100.00\|M76:34/100.00\|M8:108/100.00\|M9:354/99.72\|M91:24/100.00\|N1:353/100.00\|N10:31/100.00\|N11:22/100.00\|N2:11/100.00\|N21:44/100.00\|N22:24/100.00\|N3:22/100.00\|N7:15/100.00\|N8:21/100.00\|N9:388/99.23\|P1:202/100.00\|P2:52/100.00\|P3:22/100.00\|P4:43/100.00\|P5:25/100.00\|P9:13/100.00\|Q1:352/99.72\|Q2:46/100.00\|Q3:41/100.00\|R0:298/97.70\|R1:66/90.41\|R11:58/98.31\|R2:78/100.00\|R21:12/100.00\|R22:61/100.00\|R30:103/99.04\|R5:57/100.00\|R6:31/96.88\|R7:23/85.19\|R8:53/51.46\|R9:240/100.00\|S1:22/100.00\|S2:21/100.00\|T1:831/100.00\|T2:2135/99.72\|U1:198/93.84\|U2:546/99.64\|U3:421/100.00\|U4:762/97.69\|U5:2495/99.44\|U6:569/99.30\|U7:469/99.36\|U8:170/98.84\|U9:18/100.00\|V1:135/100.00\|V10:28/100.00\|V13:12/100.00\|V15:16/100.00\|V16:14/100.00\|V18:15/100.00\|V2:46/97.87\|V22:20/100.00\|V25:20/100.00\|V3:45/100.00\|V5:12/100.00\|V7:104/97.20\|V8:16/100.00\|V9:32/100.00\|W1:237/99.58\|W3:148/100.00\|W4:44/97.78\|W5:70/100.00\|W6:109/99.09\|X1:16/100.00\|X2:638/100.00\|X3:20/100.00\|Y1:150/100.00\|Y2:63/100.00\|Z1:110/100.00\|Z3:62/51.24\|Z4:36/97.30	.	.	.	.	.	12	56027	0.000212774	0.993422	56398	.	PASS	0,241	0,184	40	446	.
chrM	15907	rs41383248	A	G	0.99963	400	0	.	.	U2:386/70.44	.	.	.	.	2.81329	1	546	1.77245e-05	0.00967759	56419	.	PASS	0,239	1,183	40	446	.
chrM	16051	rs117565943	A	G	1	1587	1	Possible-susceptibility-to-bullous-pemphigoid	Reported	B6:39/54.93\|E2:88/100.00\|M53:27/100.00\|U2:527/96.17\|U9:11/61.11	31824475	noncoding	nr	nr	.	12	1427	0.000212706	0.0252942	56416	.	PASS	1,229	0,187	40	446	.
chrM	16129	rs41534744	G	C	0.99908	380	0	.	.	U2:376/68.61	.	.	.	.	.	1	545	1.77201e-05	0.00965747	56433	.	PASS	1,222	0,177	40	446	.
chrM	16183	rs28671493	A	C	0.82818	7993	0	Melanoma-patients	Reported	B2:1021/92.40\|B4:2461/79.44\|B5:660/79.33\|B6:70/98.59\|D5:245/57.38\|M1:165/64.20\|M29:14/93.33\|M53:19/70.37\|M76:25/73.53\|N10:26/83.87\|R11:52/88.14\|U1:138/65.40\|U2:300/54.74\|X1:10/62.50\|X3:14/70.00	22174736	noncoding	+	nr	.	5324	248	0.100824	0.00469653	52805	.	PASS	59,181	16,174	40	446	.
chrM	16343	rs374065731	A	G	1	859	1	.	.	N8:20/95.24\|Q1:342/96.88\|U3:407/96.67	.	.	.	.	.	2	258	3.54465e-05	0.0045726	56423	.	PASS	0,246	0,190	40	446	.
chrM	16362	rs62581341	T	C	1	10351	1	.	.	A1:14/100.00\|A12:11/84.62\|A13:26/100.00\|A14:38/100.00\|A15:75/97.40\|A17:46/100.00\|A2:1095/93.67\|A21:13/100.00\|A6:18/100.00\|D1:473/95.36\|D2:99/98.02\|D3:45/100.00\|D4:1669/98.76\|D5:421/98.59\|D6:34/100.00\|E1:379/99.21\|E2:88/100.00\|F3:318/100.00\|G2:346/99.71\|G3:50/81.97\|H6:465/97.28\|H8:67/97.10\|L4:103/94.50\|L5:28/73.68\|M28:61/98.39\|M46:11/91.67\|M6:35/100.00\|M61:26/100.00\|M68:34/97.14\|M74:128/100.00\|M76:34/100.00\|M9:328/92.39\|N10:25/80.65\|R0:287/94.10\|R6:32/100.00\|R7:26/96.30\|U2:340/62.04\|W5:42/60.00	.	.	.	.	.	55	8423	0.000978056	0.149785	56234	.	PASS	0,213	0,187	40	446	.
chrM	16519	rs3937033	T	C	1	38644	1	.	.	A11:24/61.54\|A17:33/71.74\|B2:1014/91.76\|B4:3019/97.45\|B5:814/97.84\|B6:40/56.34\|C4:777/97.98\|C5:210/98.13\|C7:203/96.67\|E1:378/98.95\|F1:1315/93.26\|F2:93/50.27\|G1:197/96.57\|H1:3881/90.57\|H10:215/90.72\|H100:15/93.75\|H104:10/90.91\|H12:12/92.31\|H16:109/95.61\|H17:56/81.16\|H18:40/95.24\|H23:93/87.74\|H24:77/90.59\|H26:77/96.25\|H27:99/93.40\|H28:48/88.89\|H3:1221/89.12\|H30:17/94.44\|H31:49/98.00\|H32:14/87.50\|H34:12/100.00\|H35:29/100.00\|H39:50/75.76\|H40:19/82.61\|H42:22/100.00\|H43:7/63.64\|H44:24/96.00\|H45:22/84.62\|H46:20/90.91\|H48:12/92.31\|H49:46/92.00\|H50:11/100.00\|H51:13/81.25\|H52:21/95.45\|H53:10/83.33\|H55:27/93.10\|H56:28/82.35\|H58:49/89.09\|H59:19/100.00\|H61:11/100.00\|H65:9/90.00\|H66:9/75.00\|H7:404/93.09\|H71:10/100.00\|H73:12/100.00\|H79:15/93.75\|H82:9/90.00\|H86:12/92.31\|H9:17/77.27\|HV12:16/50.00\|HV13:12/66.67\|HV18:12/100.00\|I1:311/95.69\|I2:213/89.50\|I3:77/97.47\|I4:145/97.32\|I5:105/93.75\|K1:1745/93.12\|K2:358/95.21\|L0:1321/78.49\|L1:843/86.91\|L3:1416/60.15\|L4:74/67.89\|L6:12/100.00\|M1:249/96.89\|M18:28/96.55\|M2:224/88.19\|M20:79/96.34\|M21:67/63.81\|M22:7/58.33\|M23:231/99.14\|M24:59/96.72\|M27:106/73.61\|M28:61/98.39\|M29:15/100.00\|M3:170/88.54\|M30:128/92.09\|M33:87/96.67\|M34:10/90.91\|M35:108/99.08\|M36:26/68.42\|M37:36/97.30\|M38:26/96.30\|M4:29/93.55\|M41:10/83.33\|M42:37/61.67\|M44:12/100.00\|M45:28/93.33\|M46:12/100.00\|M49:39/92.86\|M5:190/87.16\|M52:28/57.14\|M53:27/100.00\|M54:12/100.00\|M57:17/100.00\|M6:27/77.14\|M61:26/100.00\|M62:27/100.00\|M65:43/91.49\|M66:9/75.00\|M68:35/100.00\|M7:886/55.00\|M71:63/55.75\|M73:39/95.12\|N1:331/93.77\|N11:22/100.00\|N2:7/63.64\|N21:44/100.00\|N22:12/50.00\|N7:8/53.33\|N8:20/95.24\|P2:50/96.15\|P3:19/86.36\|P5:25/100.00\|P9:10/76.92\|Q2:45/97.83\|R1:70/95.89\|R11:38/64.41\|R2:62/79.49\|R22:61/100.00\|R30:83/79.81\|R5:39/68.42\|R6:30/93.75\|R8:99/96.12\|R9:154/64.17\|S2:17/80.95\|T1:788/94.83\|T2:2005/93.65\|U2:415/75.73\|U4:689/88.33\|U7:466/98.73\|V10:28/100.00\|W1:224/94.12\|W3:137/92.57\|W4:44/97.78\|W5:68/97.14\|W6:104/94.55\|X1:16/100.00\|X2:610/95.61\|X3:17/85.00\|Y1:150/100.00\|Z1:109/99.09	.	.	.	.	.	83	35648	0.00153029	0.657251	54238	.	PASS	0,242	0,188	40	446	.

Shared Variants (SR/Mitopore format)

Variants present in both sequencing methods (SR/Mitopore VCF format)