{"version": "v2", "meta": {"title": "West Nile Virus Lineage 1A – Phylogenetic Diversity with focus on Portugal, 2025", "updated": "2026-02-13", "build_url": "https://github.com/nextstrain/WNV", "data_provenance": [{"name": "GenBank", "url": "https://www.ncbi.nlm.nih.gov/genbank/"}], "display_defaults": {"color_by": "lineage", "map_triplicate": true, "geo_resolution": "country", "distance_measure": "div"}, "genome_annotations": {"nuc": {"end": 11029, "start": 1, "strand": "+", "type": "source", "seqid": "defaults/lineage-1A/reference.gb"}, "2K": {"end": 6915, "seqid": "defaults/lineage-1A/reference.gb", "start": 6847, "strand": "+", "type": "CDS"}, "NS1": {"end": 3525, "seqid": "defaults/lineage-1A/reference.gb", "start": 2470, "strand": "+", "type": "CDS"}, "NS2A": {"end": 4218, "seqid": "defaults/lineage-1A/reference.gb", "start": 3526, "strand": "+", "type": "CDS"}, "NS2B": {"end": 4611, "seqid": "defaults/lineage-1A/reference.gb", "start": 4219, "strand": "+", "type": "CDS"}, "NS3": {"end": 6468, "seqid": "defaults/lineage-1A/reference.gb", "start": 4612, "strand": "+", "type": "CDS"}, "NS4A": {"end": 6846, "seqid": "defaults/lineage-1A/reference.gb", "start": 6469, "strand": "+", "type": "CDS"}, "NS4B": {"end": 7680, "seqid": "defaults/lineage-1A/reference.gb", "start": 6916, "strand": "+", "type": "CDS"}, "NS5": {"end": 10395, "seqid": "defaults/lineage-1A/reference.gb", "start": 7681, "strand": "+", "type": "CDS"}, "capsid": {"end": 465, "seqid": "defaults/lineage-1A/reference.gb", "start": 97, "strand": "+", "type": "CDS"}, "env": {"end": 2469, "seqid": "defaults/lineage-1A/reference.gb", "start": 967, "strand": "+", "type": "CDS"}, "prM": {"end": 966, "seqid": "defaults/lineage-1A/reference.gb", "start": 466, "strand": "+", "type": "CDS"}}, "description": "We gratefully acknowledge the authors, originating and submitting laboratories of the genetic sequences and metadata for sharing their work. Please note that although data generators have generously shared data in an open fashion, that does not mean there should be free license to publish on this data. Data generators should be cited where possible and collaborations should be sought in some circumstances. Please try to avoid scooping someone else's work. Reach out if uncertain.\n\nSpecial thanks to individuals at the [Northwest Pathogen Genomics Center of Excellence](https://github.com/NW-PaGe) and [Grubaugh lab](https://grubaughlab.com/) for comments, code and suggestions.\n\n**We maintain three views of WNV evolution:**\n\nThe first view is [`wnv/all-lineages`](https://next.nextstrain.org/WNV/all-lineages/), which focuses on the broader viral diversity for all WNV sequences submitted to GenBank that contain at least 75% of the genome length. Sequences are aligned to the reference sequence [AF260968](https://www.ncbi.nlm.nih.gov/nuccore/AF260968), which is the first WNV L1 (cluster 1) strain recovered in Egypt from 1951 ([Mencattelli, et al, 2023](https://doi.org/10.1038/s41467-023-42185-7)). The phylogenetic tree was mid-point rooted.\n\nThe second view is [`wnv/lineage-1A`](https://next.nextstrain.org/WNV/lineage-1A/), which focuses on the global lineage 1A. Sequences are aligned to RefSeq reference [NC_009942](https://www.ncbi.nlm.nih.gov/nuccore/NC_001563), and the phylogenetic tree was outgroup-rooted using a near Lineage-1B sequence [KX394399](https://www.ncbi.nlm.nih.gov/nuccore/KX394399).\n\nThe third view is [`wnv/lineage-2`](https://next.nextstrain.org/WNV/lineage-2/), which focuses on a global lineage 2. Sequences are aligned to the RefSeq reference [NC_001563](https://www.ncbi.nlm.nih.gov/nuccore/NC_001563) and the phylogenetic tree was best-rooted.\n\n#### Underlying data\n\nWe curate sequence data and metadata from NCBI as starting point for our analyses. For global lineage designations, we query [pathoplexus](https://pathoplexus.org/) for lineage assignments and exclusively work with NCBI-sourced records at this time. Curated sequences and metadata are available as flat files at:\n\n* [data.nextstrain.org/files/workflows/WNV/sequences.fasta.zst](https://data.nextstrain.org/files/workflows/WNV/sequences.fasta.zst)\n* [data.nextstrain.org/files/workflows/WNV/metadata.tsv.zst](https://data.nextstrain.org/files/workflows/WNV/metadata.tsv.zst)\n", "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "num_date", "title": "Sampling Date", "type": "continuous"}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Asia", "#447CCD"], ["Africa", "#CEB541"], ["Europe", "#E39B39"], ["South America", "#E56C2F"], ["North America", "#DC2F24"]]}, {"key": "country", "title": "Country", "type": "categorical"}, {"key": "division", "title": "Division", "type": "categorical"}, {"key": "lineage", "title": "Lineage", "type": "categorical"}, {"key": "clade_membership", "title": "Clade", "type": "categorical"}, {"key": "author", "title": "Authors", "type": "categorical"}, {"key": "host", "title": "Host Species", "type": "categorical"}, {"key": "host_genus", "title": "Host Genus", "type": "categorical"}, {"key": "host_type", "title": "Host Type", "type": "categorical"}], "filters": ["region", "country", "division", "author", "host", "host_genus", "host_type"], "geo_resolutions": [{"key": "region", "demes": {"Europe": {"latitude": 49.646237, "longitude": 10.799454}, "Africa": {"latitude": 4.070194, "longitude": 21.824559}, "North America": {"latitude": 28.2367447, "longitude": -97.738017}, "South America": {"latitude": -13.083583, "longitude": -58.470721}, "Asia": {"latitude": 35.000074, "longitude": 104.999927}}}, {"key": "country", "demes": {"Russia": {"latitude": 64.6863136, "longitude": 97.7453061}, "Spain": {"latitude": 40.4637, "longitude": -3.7492}, "Israel": {"latitude": 31.217736, "longitude": 34.903129}, "Portugal": {"latitude": 39.54046, "longitude": -8.174701}, "United Arab Emirates": {"latitude": 23.546651, "longitude": 54.065059}, "Azerbaijan": {"latitude": 40.3936294, "longitude": 47.7872508}, "Colombia": {"latitude": 2.893108, "longitude": -73.7845142}, "Italy": {"latitude": 43.382775, "longitude": 12.183629}, "India": {"latitude": 21.077353, "longitude": 78.723951}, "Argentina": {"latitude": -37.052315, "longitude": -64.869142}, "Senegal": {"latitude": 14.5, "longitude": -14.25}, "British Virgin Islands": {"latitude": 18.4024395, "longitude": -64.5661642}, "Pakistan": {"latitude": 30.0, "longitude": 70.0}, "Egypt": {"latitude": 26.8206, "longitude": 30.8025}, "Canada": {"latitude": 61.0666922, "longitude": -107.991707}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Ethiopia": {"latitude": 9.145, "longitude": 40.4897}, "Central African Republic": {"latitude": 7.0323598, "longitude": 19.9981227}, "Morocco": {"latitude": 32.549785, "longitude": -5.480765}, "China": {"latitude": 33.394333, "longitude": 104.689839}, "France": {"latitude": 46.2276, "longitude": 2.2137}, "Mexico": {"latitude": 19.4325301, "longitude": -99.1332101}, "Kenya": {"latitude": 0.0236, "longitude": 37.9062}, "Nigeria": {"latitude": 10.0, "longitude": 8.0}, "USA": {"latitude": 38.916963, "longitude": -98.891372}, "Cyprus": {"latitude": 34.965802, "longitude": 33.171772}, "Turkey": {"latitude": 39.046746, "longitude": 36.767068}, "Zambia": {"latitude": -14.5186239, "longitude": 27.5599164}}}, {"key": "division", "demes": {"Connecticut": {"latitude": 41.678117, "longitude": -72.669773}, "New Mexico": {"latitude": 34.5199, "longitude": -105.8701}, "Iowa": {"latitude": 41.878, "longitude": -93.0977}, "Nebraska": {"latitude": 41.4925, "longitude": -99.9018}, "California": {"latitude": 36.357039, "longitude": -119.690182}, "British Virgin Islands": {"latitude": 18.4024395, "longitude": -64.5661642}, "Idaho": {"latitude": 43.810421, "longitude": -114.351215}, "Sicily": {"latitude": 37.636932, "longitude": 14.193097}, "Piaui": {"latitude": -7.7183, "longitude": -42.7289}, "New York": {"latitude": 40.703395, "longitude": -73.904193}, "North Dakota": {"latitude": 47.6201461, "longitude": -100.540737}, "Minas Gerais": {"latitude": -18.35789, "longitude": -44.411895}, "Georgia": {"latitude": 32.1656, "longitude": -82.9001}, "Illinois": {"latitude": 40.088552, "longitude": -89.301876}, "Washington": {"latitude": 47.183945, "longitude": -119.950361}, "Utah": {"latitude": 39.4225192, "longitude": -111.7143583}, "Massachusetts": {"latitude": 42.340741, "longitude": -71.998513}, "Colorado": {"latitude": 39.5501, "longitude": -105.7821}, "Campania": {"latitude": 40.922286, "longitude": 14.904416}, "Arizona": {"latitude": 34.220707, "longitude": -111.657462}, "Washington DC": {"latitude": 38.8950368, "longitude": -77.0365427}, "Lombardy": {"latitude": 45.4791, "longitude": 9.8452}, "Oregon": {"latitude": 43.8041, "longitude": -120.5542}, "Virginia": {"latitude": 37.926868, "longitude": -78.024902}, "Florida": {"latitude": 27.6648, "longitude": -81.5158}, "Nevada": {"latitude": 38.8026, "longitude": -116.4194}, "New Hampshire": {"latitude": 43.1939, "longitude": -71.5724}, "Puerto Rico": {"latitude": 18.2208, "longitude": -66.5901}, "Veneto": {"latitude": 45.4415, "longitude": 12.3153}, "Ohio": {"latitude": 40.199215, "longitude": -82.825637}, "Wyoming": {"latitude": 43.076, "longitude": -107.2903}, "Texas": {"latitude": 31.146868, "longitude": -99.188758}, "Minnesota": {"latitude": 46.126042, "longitude": -94.619581}, "Antioquia": {"latitude": 6.709191, "longitude": -75.484721}, "Friuli Venezia Giulia": {"latitude": 46.2259, "longitude": 13.1034}, "Astrakhan Region": {"latitude": 46.3498308, "longitude": 48.0326203}, "Kerala": {"latitude": 10.359825, "longitude": 76.39955}, "Cear\u00e1": {"latitude": -5.4984, "longitude": -39.3206}, "Louisiana": {"latitude": 30.9843, "longitude": -91.9623}, "Mississippi": {"latitude": 32.9715645, "longitude": -89.7348497}, "South Dakota": {"latitude": 44.6471761, "longitude": -100.348761}}}], "panels": ["tree", "map", "entropy", "frequencies"], 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Islands": 0.00198, "Argentina": 0.00173, "Mexico": 0.00162}, "entropy": 2.075}, "region": {"value": "Africa", "confidence": {"Africa": 0.816, "Asia": 0.162, "Europe": 0.022}, "entropy": 0.547}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AY603654", "node_attrs": {"div": 0.0246876, "num_date": {"value": 1976.001, "confidence": [1976.001, 1976.629], "inferred": true, "raw_value": "1976-XX-XX"}, "accession": "AY603654", "url": "https://www.ncbi.nlm.nih.gov/nuccore/AY603654", "author": {"author": "Beasley et al.", "value": "Beasley et al."}, "clade_membership": {"value": "NY99"}, "lineage": {"value": "1A"}, "country": {"value": "Ethiopia", "confidence": {"Ethiopia": 1.0}, "entropy": -1e-12}, "region": {"value": "Africa", "confidence": {"Africa": 1.0}, "entropy": -1e-12}}, "branch_attrs": {"mutations": {"nuc": ["A195T", "A222G", "A231T", "T348C", "G520A", "G558A", "G588A", "T609C", "C612T", "G780T", "C882A", "C912T", "T940C", "C1047T", "T1071C", "C1137T", "T1143C", "A1218G", 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{"value": "Georgia"}, "url": "https://www.ncbi.nlm.nih.gov/nuccore/MH170273", "author": {"author": "Swetnam et al.", "value": "Swetnam et al."}, "clade_membership": {"value": "NY99"}, "lineage": {"value": "1A"}, "host": {"value": "Corvus brachyrhynchos"}, "host_type": {"value": "Bird"}, "host_genus": {"value": "Corvus"}, "country": {"value": "USA", "confidence": {"USA": 1.0}, "entropy": -1e-12}, "region": {"value": "North America", "confidence": {"North America": 1.0}, "entropy": -1e-12}}, "branch_attrs": {"mutations": {"nuc": ["A10426G"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"nuc": "AGTAGTTCGCCTGTGTGAGCTGACAAACTTAGTAGTGTTTGTGAGGATTAACAACAATTAACACAGTGCGAGCTGTTTCTTAGCACGAAGATCTCGATGTCTAAGAAACCAGGAGGGCCCGGCAAGAGCCGGGCTGTCAATATGCTAAAACGCGGAATGCCCCGCGTGTTGTCCTTGATTGGACTGAAGAGGGCAATGTTGAGCCTGATCGACGGCAAGGGACCAATACGATTTGTGTTGGCTCTCTTGGCGTTCTTCAGGTTCACAGCAATTGCTCCGACCCGAGCAGTGCTGGATCGATGGAGAGGTGTGAACAAACAAACAGCGATGAAACACCTTCTGAGTTTTAAGAAGGAACTAGGGACCTTGACCAGTGCTATCAATCGGCGGAGCTCAAAACAAAAGAAAAGAGGAGGAAAGACCGGAATTGCAGTCATGATTGGCCTGATCGCCAGCGTGGGAGCAGTTACCCTCTCTAACTTCCAAGGGAAGGTGATGATGACGGTAAATGCTACTGACGTCACAGATGTCATCACGATTCCAACAGCTGCTGGAAAGAATCTATGCATTGTCAGAGCAATGGATGTGGGGTACATGTGTGATGATACTATCACCTATGAATGTCCAGTGCTGTCGGCTGGTAATGATCCAGAAGACATCGACTGTTGGTGCACAAAGTCAGCAGTCTACGTCAGGTATGGAAGATGCACCAAGACACGCCACTCAAGACGTAGTCGGAGGTCACTGACAGTGCAGACACATGGAGAAAGCACTCTAGCGAACAAGAAGGGGGCTTGGATGGACAGCACCAAGGCTACAAGGTATTTGGTAAAAACAGAATCATGGATCTTGAGGAACCCCGGATATGCCCTGGTGGCAGCCGTCATTGGTTGGATGCTTGGAAGCAACACCATGCAGCGAGTTGTGTTTGTCGTGCTATTGCTCTTGGTGGCTCCAGCCTACAGCTTTAACTGCCTTGGAATGAGCAACAGAGACTTCTTAGAGGGAGTATCTGGAGCAACATGGGTGGATTTGGTTCTCGAAGGCGACAGCTGTGTGACCATCATGTCTAAGGACAAGCCTACCATCGATGTGAAGATGATGAATATGGAGGCTGCCAACCTGGCAGAGGTCCGCAGTTATTGCTATCTGGCTACCGTCAGCGATCTCTCCACCAAAGCTGCGTGCCCGACTATGGGAGAAGCTCACAATGACAAACGTGCTGACCCAGCTTTTGTGTGCAAACAAGGAGTGGTGGACAGGGGTTGGGGCAACGGCTGCGGACTATTTGGCAAAGGAAGCATTGACACATGCGCCAAATTTGCCTGTTCCACCAAGGCAACAGGAAGAACCATTCTGAAAGAGAACATCAAGTACGAAGTGGCTATCTTTGTCCATGGACCAACCACTGTGGAGTCGCATGGAAACTACTCCACACAGATTGGGGCCACTCAGGCAGGGAGATTCAGCATCACTCCTGCGGCGCCTTCATACACACTAAAACTTGGAGAATATGGAGAGGTGACGGTGGACTGTGAACCACGATCAGGGATTGACACCAATGCATACTACGTGATGACTGTCGGAACAAAGACGTTCTTGGTCCATCGTGAGTGGTTTATGGACCTCAACCTCCCCTGGAGCAGTGCCGGAAGCACTGTGTGGAGGAACAGAGAGACGTTGATGGAGTTTGAGGAACCACACGCCACGAAGCAGTCTGTGATAGCATTGGGCTCACAAGAGGGAGCTCTGCATCAAGCTTTGGCTGGAGCCATTCCTGTGGAATTTTCAAGCAACACTGTCAAGTTGACGTCGGGTCATTTGAAGTGTAGAGTGAAGATGGAAAAATTGCAGTTGAAGGGAACAACCTACGGCGTCTGTTCAAAGGCTTTCAAGTTTCTTGGGACTCCCGCAGACACAGGTCACGGCACTGTGGTGTTGGAATTGCAGTACACTGGCACGGATGGACCTTGTAAAGTTCCCATCTCGTCAGTGGCTTCATTGAACGACCTAACGCCAGTGGGCAGGTTGGTCACTGTCAACCCTTTTGTTTCAGTGGCCACGGCCAATGCCAAGGTCCTGATTGAATTGGAACCACCCTTTGGAGACTCATACATAGTGGTGGGCAGAGGAGAACAACAGATTAATCACCATTGGCACAAGTCTGGAAGCAGCATTGGCAAAGCCTTTACAACCACCCTCAAAGGGGCGCAGAGACTAGCCGCCCTAGGAGATACAGCTTGGGACTTTGGATCAGTTGGAGGGGTGTTCACCTCAGTAGGGAAGGCTGTCCATCAAGTGTTCGGTGGAGCATTCCGCTCACTGTTCGGAGGCATGTCTTGGATAACGCAAGGATTGCTGGGGGCTCTGCTGTTGTGGATGGGCATCAATGCTCGTGACAGGTCCATAGCTCTCACGTTTCTCGCAGTTGGAGGAGTTCTGCTCTTTCTCTCCGTGAACGTGCACGCTGACACTGGATGTGCCATAGACATCAGCCGGCAGGAGCTGAGATGTGGAAGTGGAGTGTTCATACACAATGATGTGGAGGCTTGGATGGACCGGTACAAGTACTACCCTGAAACGCCACAAGGCCTAGCCAAGATCATTCAAAAAGCCCACAAAGAAGGAGTGTGCGGTCTACGGTCAGTTTCCAGACTGGAGCACCAAATGTGGGAAGCAGTGAAGGACGAGCTGAACACTCTTTTGAAAGAGAATGGTGTGGACCTCAGTGTCGTGGTTGAGAAACAGGAGGGAATGTACAAGTCAGCACCTAAACGTCTCACCGCTACCACGGAAAAATTGGAAATAGGCTGGAAGGCCTGGGGAAAGAGCATCCTATTCGCACCAGAATTGGCCAACAACACCTTTGTGGTTGATGGTCCGGAGACCAAGGAATGCCCAACTCAGAATCGCGCTTGGAACAGCTTGGAAGTGGAGGATTTTGGATTTGGTCTCACCAGCACCCGGATGTTCCTGAAGGTCAGAGAGAGCAACACAACTGAATGTGACTCAAAGATCATCGGAACGGCTGTCAAGAACAACTTGGCGATCCACAGTGACCTGTCCTATTGGATTGAAAGCAGGCTCAATGATACGTGGAAGCTTGAAAGGGCGGTTCTGGGTGAAGTCAAATCATGCACGTGGCCTGAAACGCACACCTTGTGGGGCGATGGAATCCTCGAGAGTGACTTGATAATACCAGTCACACTGGCGGGACCACGAAGCAACCACAATCGGAGACCTGGGTACAAGACACAAAACCAGGGCCCATGGGACGAAGGCCGGGTAGAGATTGATTTCGATTACTGCCCAGGAACGACGGTCACCCTGAGTGAGAGCTGCGGACACCGTGGACCTGCCACTCGCACCACCACAGAGAGCGGAAAGCTGATAACAGACTGGTGCTGCAGGAGCTGCACCTTACCACCATTGCGCTACCAGACGGACAGCGGTTGTTGGTATGGTATGGAGATTAGACCACAGAGACATGATGAAAAGACCCTTGTGCAGTCACAAGTGAATGCTTACAACGCTGATATGATTGATCCTTTTCAGTTGGGCCTTCTGGTCGTGTTCTTGGCCACCCAGGAGGTCCTTCGCAAGAGGTGGACAGCCAAGATCAGCATGCCAGCTATACTGATTGCTCTGCTAGTCCTGGTGTTTGGGGGCATTACTTACACTGACGTGTTACGCTATGTCATCTTGGTGGGAGCAGCTTTTGCAGAATCTAATTCGGGAGGAGACGTGGTACACTTGGCGCTCATGGCGACCTTCAAGATACAACCAGTGTTTATGGTGGCATCGTTTCTCAAAGCGAGATGGACCAACCAGGAGAACATCTTGTTGATGTTGGCGGCTGTTTTCTTTCAAATGGCTTACCATGATGCCCGCCAAATTCTGCTTTGGGAGATCCCTGATGTGTTGAATTCACTGGCAGTAGCTTGGATGATACTGAGAGCCATAACATTCACAACAACATCAAACGTGGTTGTTCCGCTGCTAGCCCTGCTAACACCCGGGCTGAGATGCTTGAATCTGGATGTGTACAGGATCCTGCTATTGATGGTCGGAATAGGCAGCTTGATCAGGGAGAAGAGAAGTGCAGCTGCAAAAAAGAAAGGAGCAAGTCTGTTATGCCTGGCTCTAGCCTCAACAGGACTTTTCAACCCTATGATCCTCGCCGCTGGACTCATTGCATGTGATCCCAACCGTAAACGAGGGTGGCCCGCAACTGAAGTGATGACTGCTGTCGGCCTAATGTTTGCCATTGTCGGAGGGCTGGCAGAGCTTGACATTGACTCCATGGCCATTCCAATGACCATCGCAGGGCTCATGTTTGCTGCCTTCGTGATTTCTGGGAAATCAACAGATATGTGGATCGAGAGGACGGCGGACATCTCCTGGGAAAGTGATGCGGAAATTACAGGCTCGAGCGAAAGAGTTGATGTGCGGCTTGATGATGATGGAAATTTCCAGCTCATGAATGATCCAGGAGCACCTTGGAAGATATGGATGCTCAGAATGGCTTGCCTCGCGATTAGTGCGTACACCCCTTGGGCAATCCTGCCCTCAGTAGTTGGATTTTGGATAACTCTCCAATACACAAAGAGAGGAGGTGTGCTGTGGGACACTCCCTCACCAAAGGAGTACAAAAAGGGGGACACGACCACTGGCGTCTACAGGATCATGACTCGTGGGCTGCTCGGCAGTTATCAAGCAGGAGCGGGCGTGATGGTTGAAGGTGTTTTCCACACCCTTTGGCATACAACAAAAGGAGCCGCTTTGATGAGCGGAGAAGGCCGCCTGGACCCATACTGGGGTAGTGTCAAGGAGGATCGACTTTGCTACGGAGGACCCTGGAAATTGCAGCACAAGTGGAATGGGCAGGATGAGGTGCAAATGATTGTGGTGGAACCTGGCAAGAACGTCAAAAACGTCCAGACGAAACCAGGGGTGTTCAAAACACCTGAAGGAGAAATCGGGGCCGTGACTCTGGACTTCCCCACTGGAACATCAGGCTCACCAATAGTGGACAAAAACGGTGATGTGATCGGGCTCTATGGCAATGGAGTCATAATGCCCAACGGCTCATACATAAGCGCGATAGTGCAGGGTGAAAGGATGGATGAGCCGATCCCAGCCGGATTCGAACCTGAGATGCTGAGGAAAAAACAGATCACAGTTCTGGACCTTCATCCCGGTGCTGGTAAAACAAGGAGGATACTGCCACAGATCATCAAAGAGGCCATAAATAGAAGACTGAGAACAGCCGTGCTAGCACCAACTAGGGTTGTAGCCGCTGAGATGGCTGAAGCCCTGAGAGGACTGCCCATCCGGTATCAGACATCTGCAGTGACCAGAGAACACAATGGAAATGAGATTGTTGATGTCATGTGCCATGCTACCCTCACTCACAGGCTGATGTCTCCTCACAGGGTGCCGAACTACAATCTATTCGTGATGGATGAGGCTCATTTCACCGACCCAGCTAGCATCGCAGCAAGAGGTTACATTTCCACAAAAGTCGAGCTGGGGGAGGCGGCGGCAATATTCATGACAGCTACCCCACCAGGCACCTCAGATCCATTCCCAGAGTCCAATTCACCTATTTCTGACTTGCAGACTGAGATCCCGGATCGGGCCTGGAACTCTGGGTACGAATGGATTACAGAATACATCGGGAAAACGGTTTGGTTTGTGCCTAGTGTGAAAATGGGGAATGAGATTGCCCTTTGTCTACAACGTGCCGGCAAAAAAGTAGTCCAATTGAACAGAAAGTCGTATGAGACGGAGTACCCAAAGTGCAAGAACGATGATTGGGACTTTGTTATCACAACAGACATATCTGAAATGGGGGCTAACTTCAAGGCGAGCAGGGTGATTGACAGCCGGAAGAGTGTGAAACCAACCATCATCACAGAAGGAGAAGGGAGGGTGATCCTGGGAGAACCATCCGCTGTGACAGCAGCTAGTGCAGCCCAGAGACGTGGACGCATCGGTAGGAATCCGTCGCAAGTTGGTGATGAGTACTGCTATGGGGGGCACACGAATGAAGACGACTCGAACTTCGCCCATTGGACTGAGGCACGAATCATGCTGGACAACATCAACATGCCAAACGGACTGATCGCTCAATTCTACCAACCAGAGCGTGAGAAGGTATACACCATGGATGGGGAATACCGACTCAGAGGAGAAGAGAGGAAAAACTTTCTGGAATTGTTGAGGACTGCAGATCTGCCAGTTTGGCTGGCTTACAAGGTGGCAGCGGCTGGAGTGTCATACCACGATCGGAGGTGGTGCTTTGATGGCCCTAGGACAAACACAATTCTAGAAGACAACAACGAAGTGGAAGTCATCACGAAGCTTGGTGAAAGGAAGATTCTGAGGCCACGCTGGATTGACGCCAGGGTGTACTCGGACCATCAGGCACTAAAGGCGTTCAAGGACTTTGCTTCGGGAAAGCGTTCTCAGATAGGGCTCATTGAGGTTCTGGGAAAGATGCCTGAGCACTTCATGGGGAAGACATGGGAAGCACTTGACACCATGTACGTTGTGGCCACTGCAGAGAAAGGAGGAAGAGCTCACAGAATGGCCTTGGAGGAACTGCCAGATGCTCTCCAGACAATTGCCCTGATTGCCTTATTGAGTGTGATGACCATGGGAGTATTCTTCCTCCTCATGCAGCGGAAGGGCATTGGAAAGATAGGTTTGGGAGGCGTTGTCTTGGGAGTCGCAACCTTCTTCTGTTGGATGGCTGAAGTTCCAGGAACGAAGATCGCCGGAATGTTGCTGCTTTCCCTTCTCTTGATGATTGTGCTAATTCCTGAGCCAGAGAAGCAACGTTCGCAGACAGACAACCAGCTAGCCGTGTTCCTGATTTGTGTGTTGACCCTCGTGAGCGCAGTGGCAGCCAACGAAATGGGTTGGCTAGACAAGACCAAGAATGACATAAGCAGTTTGTTTGGGCAAAGAATTGAGGCCAAGGAGAATTTCAGTATGGGAGAGTTTCTCCTGGACTTGAGACCGGCAACAGCCTGGTCACTGTACGCTGTGACCACAGCGGTTCTCACTCCACTGCTAAAGCATCTGATCACGTCAGATTACATCAACACTTCATTGACCTCAATCAATGTTCAAGCAAGTGCACTATTCACACTCGCGCGAGGCTTCCCCTTTGTCGATGTTGGAGTGTCGGCTCTCCTGCTAGCAGCCGGATGCTGGGGACAAGTCACCCTCACCGTGACGGTGACAGCGGCAACACTCCTGTTCTGCCACTACGCCTACATGGTTCCCGGATGGCAGGCTGAGGCAATGCGCTCAGCCCAGCGGCGGACAGCGGCTGGAATCATGAAAAACGCTGTAGTGGATGGCATCGTGGCCACGGACGTCCCAGAATTAGAGCGCACCACACCCATCATGCAGAAGAAAGTTGGACAAATCATGCTGATCTTGGTGTCTCTAGCTGCAGTAGTAGTGAACCCGTCTGTGAAGACAGTGCGAGAAGCCGGAATTCTGATCACGGCAGCAGCGGTGACACTCTGGGAGAATGGAGCAAGCTCTGTTTGGAATGCAACAACTGCCATCGGACTCTGCCACATCATGCGTGGGGGTTGGTTGTCATGCTTATCCATAACATGGACACTCATAAAGAACATGGAAAAACCAGGACTAAAAAGAGGTGGGGCAAAAGGACGCACCTTGGGAGAGGTTTGGAAAGAAAGACTCAACCAGATGACAAAAGAAGAGTTCACTAGGTACCGCAAAGAGGCCATCATCGAAGTCGATCGCTCAGCAGCAAAACACGCCAGGAAAGAAGGCAATGTCACCGGAGGGCATCCAGTCTCTAGAGGCACAGCAAAGCTGAGATGGCTGGTCGAGCGGAGGTTTCTCGAACCGGTCGGAAAAGTGATTGACCTTGGATGTGGAAGAGGCGGTTGGTGTTACTACATGGCAACCCAAAAAAGAGTCCAAGAGGTCAGAGGGTACACAAAGGGTGGTCCCGGACATGAAGAGCCCCAACTGGTGCAAAGTTATGGATGGAACATTGTCACCATGAAGAGCGGAGTGGATGTGTTCTACAGACCTTCTGAGTGCTGCGACACCCTCCTTTGTGACATCGGAGAGTCTTCATCAAGTGCTGAGGTTGAAGAGCATAGGACGATCCGGGTCCTTGAAATGGTTGAGGACTGGCTGCACCGAGGGCCAAAGGAATTTTGTGTGAAGGTGCTCTGCCCCTACATGCCAAAAGTCATAGAGAAGATGGAGCTGCTCCAGCGCCGGTATGGGGGGGGACTGGTCAGAAACCCACTCTCGCGGAATTCCACGCACGAGATGTATTGGGTAAGTCGAGCTTCAGGCAATGTGGTACACTCAGTGAACATGACTAGCCAGGTGCTTCTGGGAAGAATGGAGAAAAGGACCTGGAAGGGACCCCAATACGAGGAAGATGTAAACTTGGGAAGTGGAACCAGGGCGGTGGGAAAACCCCTACTCAACTCAGACACCAGTAAAATCAAGAACAGGATTGAACGACTCAGGCGTGAGTACAGTTCGACGTGGCACCACGATGAGAACCACCCATATAGAACCTGGAACTATCACGGCAGTTATGATGTGAAACCCACAGGCTCCGCCAGCTCGCTGGTCAATGGAGTGGTTAGGCTCCTCTCAAAACCATGGGACACCATCACGAATGTTACCACCATGGCCATGACTGACACTACTCCCTTCGGACAGCAGCGGGTGTTCAAAGAGAAGGTGGACACGAAAGCTCCTGAACCGCCAGAAGGAGTGAAGTATGTGCTCAACGAAACCACCAACTGGTTGTGGGCGTTTCTGGCCAGAGAAAAACGTCCCAGAATGTGCTCTCGAGAGGAATTCATAAGAAAGGTCAATAGCAATGCAGCTTTGGGTGCCATGTTTGAAGAGCAGAATCAATGGAGGAGCGCCAGAGAAGCAGTTGAGGATCCAAAATTTTGGGAGATGGTGGATGAGGAGCGCGAGGCACACCTGCGGGGGGAATGTCACACTTGCATCTACAACATGATGGGAAAGAGAGAGAAGAAACCTGGAGAGTTCGGAAAGGCCAAGGGAAGCAGAGCCATATGGTTCATGTGGCTCGGAGCTCGCTTTCTGGAGTTCGAAGCTCTGGGCTTTCTCAATGAAGACCACTGGCTTGGAAGAAAGAACTCAGGAGGCGGGGTCGAGGGCTTGGGCCTCCAAAAACTGGGTTACATTCTGCGTGAAGTTGGCACCCGACCTGGAGGCAAGATCTATGCTGATGACACAGCTGGCTGGGACACCCGCATCACGAGAGCTGACTTGGAAAATGAAGCTAAGGTTCTTGAGCTGCTGGATGGGGAACATCGGCGTCTTGCTAGGGCCATCATTGAGCTCACCTATCGTCACAAAGTTGTGAAAGTGATGCGCCCGGCTGCTGATGGAAGAACCGTCATGGATGTCATCTCCAGAGAAGATCAGAGGGGGAGTGGACAAGTTGTCACCTACGCTCTAAACACCTTCACCAACCTGGCCGTCCAGTTGGTGAGGATGATGGAAGGGGAAGGAGTGATTGGCCCAGATGATGTGGAGAAACTCACAAAGGGGAAAGGACCCAAAGTCAGGACCTGGCTGTTTGAGAATGGGGAAGAAAGACTCAGCCGCATGGCTGTCAGCGGAGATGACTGTGTGGTAAAGCCCCTAGATGATCGCTTCGCCACCTCTCTCCACTTCCTCAACGCCATGTCAAAGGTTCGCAAAGACATCCAAGAGTGGAAACCATCAACTGGATGGTATGACTGGCAGCAGGTTCCATTCTGCTCGAACCATTTCACTGAATTGATCATGAAAGATGGAAGAACACTGGTGGTTCCATGCCGAGGACAGGACGAACTGGTAGGCAGAGCTCGCATTTCTCCAGGGGCCGGATGGAACGTCCGCGACACTGCTTGTCTGGCTAAGTCTTATGCCCAGATGTGGCTGCTTCTGTACTTCCACAGAAGAGACCTGCGGCTAATGGCCAACGCCATTTGCTCCGCTGTCCCTGTGAATTGGGTCCCTACCGGAAGAACCACGTGGTCCATCCATGCCGGAGGAGAGTGGATGACAACAGAGGACATGCTGGAGGTCTGGAACCGTGTTTGGATAGAGGAGAATGAATGGATGGAAGACAAAACCCCAGTGGAGAAATGGAGTGACGTCCCATACTCAGGAAAACGGGAGGACATCTGGTGTGGCAGCTTGATTGGCACAAGAGCCCGAGCCACGTGGGCAGAAAACATCCAGGTAGCCATCAACCAAGTCAGAGCAATCATTGGAGATGAGAAGTATGTGGATTACATGAGTTCATTAAAGAGATATGAAGACACAACTTTGGTTGAGGACACAGTACTGTAAATACTTTATTAATTGTAAATAGACAATGTAAGCATGTGTAAAAGTATAGTTTTATAGTAGCATTTAGTGATGTTAGTGTAAATAGTTAAGAAAATTTTAAGGAGGAAGTCAGGCCGGAAAGTTTCCGCCACCGGAAGTTGAGTAGACGGTGCTGCCTGCGACTCAACCCCAGGAGGACTGGGTGAACAAAGCTGCGAAGTGATCCATGTAAGCCCTCAGAACCGTCTCGGAAGGAGGACCCCACATGTTGTAACTTCAAAGCCCAATGTCAGACCACGCTACGGCGTGCCACTCTGCGGAGAGTGCAGTCTGCGATAGTGCCCCAGGAGGACTGGGTTAACAAAGGCAAACCAACGCCCCACGCGGCCCTAGCCCTGGTAATGGTGTTAACCAGGGCGAAAGGACTAGAGGTTAGAGGAGACCCCGCGGTTTGAAGTGCACGGCCCAGCCTGACTGAAGCTGTAGGTCAGGGGAAGGACTAGAGGTTAGTGGAGACCCCGTGCCACAAAACACCACAACAAAACAGCATATTGACACCTGGGATAGACTAGGAGATCTTCTGCTCTGCACAACCAGCCACACGGCACAGTGCGCCGACAATGGTGGCTGGTGGTGCGAGAACACAGGATCT", "2K": "SQTDNQLAVFLICVLTLVSAVAA", "NS1": "DTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTEKLEIGWKAWGKSILFAPELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA", "NS2A": "YNADMIDPFQLGLLVVFLATQEVLRKRWTAKISMPAILIALLVLVFGGITYTDVLRYVILVGAAFAESNSGGDVVHLALMATFKIQPVFMVASFLKARWTNQENILLMLAAVFFQMAYHDARQILLWEIPDVLNSLAVAWMILRAITFTTTSNVVVPLLALLTPGLRCLNLDVYRILLLMVGIGSLIREKRSAAAKKKGASLLCLALASTGLFNPMILAAGLIACDPNRKR", "NS2B": "GWPATEVMTAVGLMFAIVGGLAELDIDSMAIPMTIAGLMFAAFVISGKSTDMWIERTADISWESDAEITGSSERVDVRLDDDGNFQLMNDPGAPWKIWMLRMACLAISAYTPWAILPSVVGFWITLQYTKR", "NS3": "GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEGEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEPEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVTREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYIGKTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARVYSDHQALKAFKDFASGKR", "NS4A": "SQIGLIEVLGKMPEHFMGKTWEALDTMYVVATAEKGGRAHRMALEELPDALQTIALIALLSVMTMGVFFLLMQRKGIGKIGLGGVVLGVATFFCWMAEVPGTKIAGMLLLSLLLMIVLIPEPEKQR", "NS4B": "NEMGWLDKTKNDISSLFGQRIEAKENFSMGEFLLDLRPATAWSLYAVTTAVLTPLLKHLITSDYINTSLTSINVQASALFTLARGFPFVDVGVSALLLAAGCWGQVTLTVTVTAATLLFCHYAYMVPGWQAEAMRSAQRRTAAGIMKNAVVDGIVATDVPELERTTPIMQKKVGQIMLILVSLAAVVVNPSVKTVREAGILITAAAVTLWENGASSVWNATTAIGLCHIMRGGWLSCLSITWTLIKNMEKPGLKR", "NS5": "GGAKGRTLGEVWKERLNQMTKEEFTRYRKEAIIEVDRSAAKHARKEGNVTGGHPVSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPKEFCVKVLCPYMPKVIEKMELLQRRYGGGLVRNPLSRNSTHEMYWVSRASGNVVHSVNMTSQVLLGRMEKRTWKGPQYEEDVNLGSGTRAVGKPLLNSDTSKIKNRIERLRREYSSTWHHDENHPYRTWNYHGSYDVKPTGSASSLVNGVVRLLSKPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNETTNWLWAFLAREKRPRMCSREEFIRKVNSNAALGAMFEEQNQWRSAREAVEDPKFWEMVDEEREAHLRGECHTCIYNMMGKREKKPGEFGKAKGSRAIWFMWLGARFLEFEALGFLNEDHWLGRKNSGGGVEGLGLQKLGYILREVGTRPGGKIYADDTAGWDTRITRADLENEAKVLELLDGEHRRLARAIIELTYRHKVVKVMRPAADGRTVMDVISREDQRGSGQVVTYALNTFTNLAVQLVRMMEGEGVIGPDDVEKLTKGKGPKVRTWLFENGEERLSRMAVSGDDCVVKPLDDRFATSLHFLNAMSKVRKDIQEWKPSTGWYDWQQVPFCSNHFTELIMKDGRTLVVPCRGQDELVGRARISPGAGWNVRDTACLAKSYAQMWLLLYFHRRDLRLMANAICSAVPVNWVPTGRTTWSIHAGGEWMTTEDMLEVWNRVWIEENEWMEDKTPVEKWSDVPYSGKREDIWCGSLIGTRARATWAENIQVAINQVRAIIGDEKYVDYMSSLKRYEDTTLVEDTVL", "capsid": "MSKKPGGPGKSRAVNMLKRGMPRVLSLIGLKRAMLSLIDGKGPIRFVLALLAFFRFTAIAPTRAVLDRWRGVNKQTAMKHLLSFKKELGTLTSAINRRSSKQKKRGGKTGIAVMIGLIASVGA", "env": "FNCLGMSNRDFLEGVSGATWVDLVLEGDSCVTIMSKDKPTIDVKMMNMEAANLAEVRSYCYLATVSDLSTKAACPTMGEAHNDKRADPAFVCKQGVVDRGWGNGCGLFGKGSIDTCAKFACSTKATGRTILKENIKYEVAIFVHGPTTVESHGNYSTQIGATQAGRFSITPAAPSYTLKLGEYGEVTVDCEPRSGIDTNAYYVMTVGTKTFLVHREWFMDLNLPWSSAGSTVWRNRETLMEFEEPHATKQSVIALGSQEGALHQALAGAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFKFLGTPADTGHGTVVLELQYTGTDGPCKVPISSVASLNDLTPVGRLVTVNPFVSVATANAKVLIELEPPFGDSYIVVGRGEQQINHHWHKSGSSIGKAFTTTLKGAQRLAALGDTAWDFGSVGGVFTSVGKAVHQVFGGAFRSLFGGMSWITQGLLGALLLWMGINARDRSIALTFLAVGGVLLFLSVNVHA", "prM": "VTLSNFQGKVMMTVNATDVTDVITIPTAAGKNLCIVRAMDVGYMCDDTITYECPVLSAGNDPEDIDCWCTKSAVYVRYGRCTKTRHSRRSRRSLTVQTHGESTLANKKGAWMDSTKATRYLVKTESWILRNPGYALVAAVIGWMLGSNTMQRVVFVVLLLLVAPAYS"}}